AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026023.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026023.01.T01 MTR_5g037880 83.766 308 22 2 1 308 1 280 0.0 514
MsG0580026023.01.T01 MTR_2g014470 40.625 352 138 9 5 302 4 338 9.42e-79 243
MsG0580026023.01.T01 MTR_4g015840 39.601 351 145 7 5 303 4 339 3.35e-77 239
MsG0580026023.01.T01 MTR_4g078850 38.567 363 143 8 5 306 4 347 3.63e-77 239
MsG0580026023.01.T01 MTR_2g090705 40.828 338 153 5 5 302 4 334 7.84e-75 233
MsG0580026023.01.T01 MTR_3g108020 40.597 335 149 7 5 302 4 325 3.99e-72 226
MsG0580026023.01.T01 MTR_2g014480 38.757 338 141 7 5 287 4 330 1.06e-63 204
MsG0580026023.01.T01 MTR_4g015840 47.465 217 86 3 88 304 75 263 5.07e-63 200
MsG0580026023.01.T01 MTR_3g437840 52.482 141 67 0 163 303 22 162 6.18e-51 166
MsG0580026023.01.T01 MTR_3g088140 40.777 206 94 2 102 306 179 357 3.80e-48 165
MsG0580026023.01.T01 MTR_2g006890 37.561 205 100 2 101 304 200 377 5.78e-39 141
MsG0580026023.01.T01 MTR_8g006430 28.219 365 183 11 3 302 12 362 4.43e-38 140
MsG0580026023.01.T01 MTR_2g087660 28.056 360 187 8 3 302 11 358 2.46e-36 135
MsG0580026023.01.T01 MTR_3g437360 40.571 175 78 2 106 280 183 331 3.05e-34 127
MsG0580026023.01.T01 MTR_4g050420 28.255 361 177 9 6 302 14 356 6.09e-34 128
MsG0580026023.01.T01 MTR_7g109340 30.330 333 180 11 6 302 27 343 4.46e-31 119
MsG0580026023.01.T01 MTR_2g087660 26.433 314 159 8 3 256 11 312 1.04e-25 104
MsG0580026023.01.T01 MTR_7g112360 42.683 82 42 2 6 87 17 93 3.37e-15 72.4
MsG0580026023.01.T01 MTR_7g112360 42.683 82 42 2 6 87 17 93 4.25e-15 70.9
MsG0580026023.01.T01 MTR_3g437850 33.140 172 65 5 5 132 2 167 4.05e-14 69.3
MsG0580026023.01.T01 MTR_4g085070 40.566 106 53 4 12 113 19 118 5.33e-14 68.9
MsG0580026023.01.T01 MTR_7g101070 41.667 72 35 1 5 76 358 422 7.88e-12 65.9
MsG0580026023.01.T01 MTR_3g092680 52.000 50 24 0 255 304 12 61 1.80e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026023.01.T01 AT3G08910 42.045 352 117 6 5 303 4 321 3.88e-85 259
MsG0580026023.01.T01 AT1G59725 44.910 334 139 6 5 302 4 328 1.98e-79 244
MsG0580026023.01.T01 AT2G20560 40.173 346 146 6 5 302 4 336 7.14e-78 241
MsG0580026023.01.T01 AT4G28480 40.789 304 156 3 5 302 4 289 1.60e-75 233
MsG0580026023.01.T01 AT5G01390 37.931 348 150 6 5 303 4 334 2.83e-74 231
MsG0580026023.01.T01 AT5G01390 42.475 299 146 5 5 303 4 276 4.32e-74 229
MsG0580026023.01.T01 AT5G25530 38.905 347 150 5 5 302 4 337 4.45e-72 226
MsG0580026023.01.T01 AT5G25530 38.028 355 150 6 5 302 4 345 3.38e-69 219
MsG0580026023.01.T01 AT1G10350 47.345 226 87 3 77 302 153 346 2.40e-66 212
MsG0580026023.01.T01 AT1G10350 57.333 75 25 1 5 79 4 71 2.55e-20 90.1
MsG0580026023.01.T01 AT3G47940 44.053 227 96 3 76 302 151 346 4.52e-59 193
MsG0580026023.01.T01 AT3G47940 59.211 76 23 2 5 79 4 72 1.53e-18 85.1
MsG0580026023.01.T01 AT4G28480 45.588 204 84 2 99 302 171 347 1.21e-57 189
MsG0580026023.01.T01 AT4G28480 47.059 102 33 3 5 92 4 98 3.36e-19 87.0
MsG0580026023.01.T01 AT2G20550 43.781 201 86 1 102 302 110 283 1.81e-56 184
MsG0580026023.01.T01 AT2G20550 43.781 201 86 1 102 302 110 283 1.81e-56 184
MsG0580026023.01.T01 AT5G01390 34.783 299 130 6 5 303 4 237 5.71e-49 163
MsG0580026023.01.T01 AT1G44160 39.024 205 98 1 102 306 180 357 4.92e-42 149
MsG0580026023.01.T01 AT1G11040 36.765 204 102 1 101 304 258 434 4.82e-39 142
MsG0580026023.01.T01 AT3G44110 27.371 369 185 9 3 306 12 362 4.91e-35 131
MsG0580026023.01.T01 AT5G22060 28.022 364 190 9 3 306 12 363 7.30e-35 131
MsG0580026023.01.T01 AT3G62600 30.473 338 185 11 1 302 22 345 2.52e-33 125
MsG0580026023.01.T01 AT3G44110 26.970 330 168 9 3 272 12 328 3.81e-27 108
MsG0580026023.01.T01 AT5G01390 53.333 75 28 1 5 79 4 71 2.74e-18 82.4
MsG0580026023.01.T01 AT2G22360 24.576 354 191 11 3 295 84 422 1.29e-17 83.2
MsG0580026023.01.T01 AT1G28210 24.781 343 193 13 5 295 48 377 1.99e-15 76.6
MsG0580026023.01.T01 AT1G28210 25.364 343 191 14 5 295 48 377 2.00e-15 76.6
MsG0580026023.01.T01 AT1G28210 24.781 343 193 13 5 295 48 377 2.54e-15 76.3
MsG0580026023.01.T01 AT1G56300 42.857 77 39 2 6 82 14 85 5.16e-14 67.8
MsG0580026023.01.T01 AT1G56300 42.857 77 39 2 6 82 14 85 9.88e-14 68.2
MsG0580026023.01.T01 AT3G17830 46.078 102 41 5 5 106 63 150 1.33e-12 68.6
MsG0580026023.01.T01 AT4G10130 33.663 101 59 2 6 103 12 107 1.42e-11 62.4
MsG0580026023.01.T01 AT4G10130 33.663 101 59 2 6 103 12 107 1.42e-11 62.4
MsG0580026023.01.T01 AT4G10130 33.663 101 59 2 6 103 12 107 1.42e-11 62.4
MsG0580026023.01.T01 AT4G10130 33.663 101 59 2 6 103 12 107 1.42e-11 62.4
MsG0580026023.01.T01 AT4G10130 33.663 101 59 2 6 103 12 107 1.42e-11 62.4

Find 79 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTATTGGTTAATCTTATC+TGG 0.179052 5:-29307820 None:intergenic
ATGAATTATTCAAATCTTCT+AGG 0.190799 5:-29307771 None:intergenic
TCAATATCCTCCTGTGAATT+TGG 0.194423 5:+29307954 MsG0580026023.01.T01:CDS
GTCAAAGGAGGAGTGAATTT+TGG 0.238350 5:-29307612 None:intergenic
CATTAGATTAGCCAAATTAT+AGG 0.238364 5:-29310065 None:intergenic
TGATTACTAAACCTATAATT+TGG 0.252064 5:+29310054 MsG0580026023.01.T01:exon
TAGCCTTGAGGAGCTTTATA+AGG 0.272865 5:+29308044 MsG0580026023.01.T01:CDS
TCATAGATCTGACGCTTCTT+AGG 0.281173 5:-29307922 None:intergenic
GACCGAAAAGATATCACTTC+TGG 0.329613 5:+29309796 MsG0580026023.01.T01:CDS
CCTCCTGTGAATTTGGAAAA+TGG 0.342448 5:+29307961 MsG0580026023.01.T01:CDS
TCAAACTCTTGTTTCCTTGA+AGG 0.344256 5:-29307853 None:intergenic
AAATGGTGATGGGAGTAATA+TGG 0.355363 5:+29307978 MsG0580026023.01.T01:CDS
CTAAGATTTCCTCTCTTGCT+TGG 0.359101 5:-29309950 None:intergenic
AAGGGTTCCTTGAAGGGTAT+TGG 0.378802 5:-29307834 None:intergenic
GGGAAAGGAAACTATCTTCC+AGG 0.383769 5:+29309692 MsG0580026023.01.T01:CDS
GTGTGATGAGAGAAGGGAAT+TGG 0.386204 5:-29307575 None:intergenic
TTCCTTGAAGGGTTCCTTGA+AGG 0.386957 5:-29307841 None:intergenic
AGGAATGTTCCTGATGAGTT+TGG 0.388661 5:+29308093 MsG0580026023.01.T01:CDS
CAAACTCTTGTTTCCTTGAA+GGG 0.397467 5:-29307852 None:intergenic
TGGAGTTGTTGAGAGTGATT+TGG 0.415245 5:+29308017 MsG0580026023.01.T01:CDS
GGAAACTATCTTCCAGGATC+TGG 0.417025 5:+29309698 MsG0580026023.01.T01:CDS
TAGACATATCACAGTTCAAT+TGG 0.418369 5:+29309862 MsG0580026023.01.T01:CDS
ATAACAATTTAGTTATGAAA+TGG 0.419493 5:+29307794 MsG0580026023.01.T01:CDS
ACCCTTCAAGGAACCCTTCA+AGG 0.422943 5:+29307839 MsG0580026023.01.T01:CDS
GGAATGTTCCTGATGAGTTT+GGG 0.422963 5:+29308094 MsG0580026023.01.T01:CDS
TCACTTCTGGAAGCTCTTGT+TGG 0.439755 5:+29309809 MsG0580026023.01.T01:CDS
TGAATTATTCAAATCTTCTA+GGG 0.449404 5:-29307770 None:intergenic
ACATCAGATGGTCCAGATCC+TGG 0.451615 5:-29309710 None:intergenic
AGCCTTGAGGAGCTTTATAA+GGG 0.452797 5:+29308045 MsG0580026023.01.T01:CDS
TCCTTGAAGGGTTCCTTGAA+GGG 0.457964 5:-29307840 None:intergenic
GGAAGATAGTTTCCTTTCCC+AGG 0.472749 5:-29309689 None:intergenic
GAGGATTACCCAAACTCATC+AGG 0.474496 5:-29308102 None:intergenic
AAAGGAAGGTGAAAGTTGTA+AGG 0.495090 5:+29308073 MsG0580026023.01.T01:CDS
TTGCTTGGATCCTTTGAAAG+TGG 0.501531 5:-29309935 None:intergenic
AGATTAACCAATACCCTTCA+AGG 0.505955 5:+29307827 MsG0580026023.01.T01:CDS
TATTCAACCTGGTTGGAAGA+AGG 0.511541 5:+29309649 MsG0580026023.01.T01:CDS
GAAAAGGTCGTCGCTGATGA+AGG 0.511756 5:+29309908 MsG0580026023.01.T01:CDS
GGTATTGGTTAATCTTATCT+GGG 0.512734 5:-29307819 None:intergenic
TGTTGTGGGGTCAAACTTGG+TGG 0.515244 5:-29309995 None:intergenic
TTATAGGTTTAGTAATCAGC+AGG 0.520440 5:-29310049 None:intergenic
TTCAAGGAAACAAGAGTTTG+AGG 0.523578 5:+29307855 MsG0580026023.01.T01:CDS
AATTTGGTGTGATGAGAGAA+GGG 0.528378 5:-29307581 None:intergenic
GACTCTCAACATAACAACCT+TGG 0.530480 5:+29309835 MsG0580026023.01.T01:CDS
TTTGTGCCCTTCTTCCAACC+AGG 0.531220 5:-29309656 None:intergenic
TAATTTGGTGTGATGAGAGA+AGG 0.533568 5:-29307582 None:intergenic
AACCGCAATTGAAGCCTCAT+CGG 0.534436 5:-29308281 None:intergenic
TGAAGGTATGCCACTTTCAA+AGG 0.534883 5:+29309925 MsG0580026023.01.T01:CDS
TGTGACACCGGGATATGAAA+AGG 0.540202 5:+29309892 MsG0580026023.01.T01:CDS
ATTCAACCTGGTTGGAAGAA+GGG 0.545428 5:+29309650 MsG0580026023.01.T01:CDS
ACTAAGAACTTCATAAGCCT+CGG 0.548724 5:-29307896 None:intergenic
GTGAATTTGGAAAATGGTGA+TGG 0.551968 5:+29307967 MsG0580026023.01.T01:CDS
TTATAAGGGTTGCAAAAGGA+AGG 0.556592 5:+29308059 MsG0580026023.01.T01:CDS
CGATTACTACAAAACACTAA+AGG 0.559196 5:+29307732 MsG0580026023.01.T01:CDS
CTCAACATAACAACCTTGGA+TGG 0.560567 5:+29309839 MsG0580026023.01.T01:CDS
AGCTTTATAAGGGTTGCAAA+AGG 0.560966 5:+29308055 MsG0580026023.01.T01:CDS
AGATACATATTCAACCTGGT+TGG 0.563118 5:+29309642 MsG0580026023.01.T01:CDS
TTTATTTAGTGGTTGTGCCG+CGG 0.569054 5:+29308223 MsG0580026023.01.T01:CDS
ATTGGATGATATTGTGACAC+CGG 0.570942 5:+29309880 MsG0580026023.01.T01:CDS
CTTAGCAATATCACAGGCCG+CGG 0.573640 5:-29308240 None:intergenic
TGTGATATGTCTACCATCCA+AGG 0.580757 5:-29309852 None:intergenic
AGCCGATGAGGCTTCAATTG+CGG 0.586131 5:+29308279 MsG0580026023.01.T01:CDS
TACATAACATATATCAGAGA+TGG 0.588198 5:+29310204 MsG0580026023.01.T01:three_prime_UTR
ATGGAGGTTGATGAAAGTGT+TGG 0.594938 5:+29307997 MsG0580026023.01.T01:CDS
ACAAATTTCAGATCAACTAG+TGG 0.611202 5:-29310182 None:intergenic
GCGATTCTTAGCAATATCAC+AGG 0.615781 5:-29308246 None:intergenic
GACCACATGCTATATTCAAG+AGG 0.619717 5:+29309753 MsG0580026023.01.T01:CDS
TTGGATGATATTGTGACACC+GGG 0.625337 5:+29309881 MsG0580026023.01.T01:CDS
TCAAAGGATCCAAGCAAGAG+AGG 0.627088 5:+29309941 MsG0580026023.01.T01:CDS
TCCCTCTTGAATATAGCATG+TGG 0.640037 5:-29309755 None:intergenic
CGTCAGATCTATGATCGCAA+TGG 0.644762 5:+29307931 MsG0580026023.01.T01:CDS
TGAATTTGGAAAATGGTGAT+GGG 0.646896 5:+29307968 MsG0580026023.01.T01:CDS
AACCCTTATAAAGCTCCTCA+AGG 0.648125 5:-29308047 None:intergenic
GCGGTCAAATGAAGCCGATG+AGG 0.654023 5:+29308267 MsG0580026023.01.T01:CDS
TTGAAGATACATATTCAACC+TGG 0.655040 5:+29309638 MsG0580026023.01.T01:CDS
TGATTTGGTATGTAGCCTTG+AGG 0.655134 5:+29308032 MsG0580026023.01.T01:CDS
TGGTGATGGGAGTAATATGG+AGG 0.659763 5:+29307981 MsG0580026023.01.T01:CDS
CATGCTATATTCAAGAGGGA+CGG 0.664346 5:+29309758 MsG0580026023.01.T01:CDS
ACCACATGCTATATTCAAGA+GGG 0.666261 5:+29309754 MsG0580026023.01.T01:CDS
TGTGATATTGCTAAGAATCG+CGG 0.673833 5:+29308248 MsG0580026023.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAACAAATTAATTAGAT+TGG - Chr5:29308199-29308218 None:intergenic 10.0%
!!! AATCTAATTAATTTGTTATT+AGG + Chr5:29308198-29308217 MsG0580026023.01.T01:intron 10.0%
!!! ATCTAATTAATTTGTTATTA+GGG + Chr5:29308199-29308218 MsG0580026023.01.T01:intron 10.0%
!!! TTTTTTTTACATATGAATTT+TGG + Chr5:29308924-29308943 MsG0580026023.01.T01:intron 10.0%
!! AAATCAAATACTAAAAATCA+TGG - Chr5:29308369-29308388 None:intergenic 15.0%
!! ATAACAATTTAGTTATGAAA+TGG + Chr5:29307794-29307813 MsG0580026023.01.T01:CDS 15.0%
!! CAAAACAAAAACAAAAATTA+AGG - Chr5:29308133-29308152 None:intergenic 15.0%
!!! AAAATCATGGTTTTAAATAA+AGG - Chr5:29308356-29308375 None:intergenic 15.0%
!!! TATTTGATTTGATGATTTTT+AGG + Chr5:29308379-29308398 MsG0580026023.01.T01:intron 15.0%
!!! TTTTGTTTTGTTTTGAAATT+CGG + Chr5:29308143-29308162 MsG0580026023.01.T01:intron 15.0%
!! AACAAAAATATGATGTAAGA+AGG + Chr5:29310014-29310033 MsG0580026023.01.T01:CDS 20.0%
!! ATGAATTATTCAAATCTTCT+AGG - Chr5:29307774-29307793 None:intergenic 20.0%
!! TGAATTATTCAAATCTTCTA+GGG - Chr5:29307773-29307792 None:intergenic 20.0%
!! TGATTACTAAACCTATAATT+TGG + Chr5:29310054-29310073 MsG0580026023.01.T01:exon 20.0%
!!! AAAATTACTGTTTTGAATTC+TGG - Chr5:29307655-29307674 None:intergenic 20.0%
!!! AAATTACTGTTTTGAATTCT+GGG - Chr5:29307654-29307673 None:intergenic 20.0%
!!! AATTTTGGTGAATAGTAATT+TGG - Chr5:29307600-29307619 None:intergenic 20.0%
!!! GTTTCAATTGTAAACATTTT+TGG + Chr5:29309086-29309105 MsG0580026023.01.T01:intron 20.0%
!!! TTACATCATATTTTTGTTGT+GGG - Chr5:29310012-29310031 None:intergenic 20.0%
!!! TTATGCAATTTTAACTCAAT+TGG - Chr5:29309483-29309502 None:intergenic 20.0%
!!! TTTGATGAAATTGAAGTTTT+TGG - Chr5:29307683-29307702 None:intergenic 20.0%
!!! TTTTACATATGAATTTTGGA+TGG + Chr5:29308928-29308947 MsG0580026023.01.T01:intron 20.0%
! AACAAAAATTAAGGAGAAAG+AGG - Chr5:29308124-29308143 None:intergenic 25.0%
! ACAGTTATATGTAACACAAA+TGG - Chr5:29308849-29308868 None:intergenic 25.0%
! GTTCATATCAGTTAGATAAA+AGG + Chr5:29309226-29309245 MsG0580026023.01.T01:intron 25.0%
! TACATAACATATATCAGAGA+TGG + Chr5:29310204-29310223 MsG0580026023.01.T01:three_prime_UTR 25.0%
! TGTAATAACAGTAAATGAGT+AGG - Chr5:29309455-29309474 None:intergenic 25.0%
!! AGGAGTTTTCTTTTCTAAAT+TGG + Chr5:29309582-29309601 MsG0580026023.01.T01:intron 25.0%
!! ATTCATCAACTTTTCTCAAA+TGG + Chr5:29307702-29307721 MsG0580026023.01.T01:exon 25.0%
!! CATTAGATTAGCCAAATTAT+AGG - Chr5:29310068-29310087 None:intergenic 25.0%
!! TTCATCAACTTTTCTCAAAT+GGG + Chr5:29307703-29307722 MsG0580026023.01.T01:exon 25.0%
!!! AAATTTTAAGAGAATTTCCG+AGG + Chr5:29307879-29307898 MsG0580026023.01.T01:CDS 25.0%
!!! ATACATAAGTTGGTTTAACA+AGG + Chr5:29309562-29309581 MsG0580026023.01.T01:intron 25.0%
!!! CTTACATCATATTTTTGTTG+TGG - Chr5:29310013-29310032 None:intergenic 25.0%
!!! CTTTTCTAAATTGGTTTTAC+AGG + Chr5:29309591-29309610 MsG0580026023.01.T01:intron 25.0%
!!! GTTATTAGGGTTTTATTTAG+TGG + Chr5:29308212-29308231 MsG0580026023.01.T01:intron 25.0%
!!! GTTTTTACTAGTTTTGAAAC+AGG + Chr5:29308528-29308547 MsG0580026023.01.T01:intron 25.0%
!!! TACATCATATTTTTGTTGTG+GGG - Chr5:29310011-29310030 None:intergenic 25.0%
!!! TGCTATATATTATGCTGTTT+TGG + Chr5:29309054-29309073 MsG0580026023.01.T01:intron 25.0%
AAAATGTAAGTTGCTCCTAT+AGG - Chr5:29308688-29308707 None:intergenic 30.0%
AATGTACTCACATGGAAAAA+AGG + Chr5:29309159-29309178 MsG0580026023.01.T01:intron 30.0%
ACAAATTTCAGATCAACTAG+TGG - Chr5:29310185-29310204 None:intergenic 30.0%
ACCACAAAAATTACATCAGA+TGG - Chr5:29309725-29309744 None:intergenic 30.0%
AGTAAACAAAACACAGCTTA+TGG - Chr5:29308644-29308663 None:intergenic 30.0%
ATCTGTATAATGTACTCACA+TGG + Chr5:29309151-29309170 MsG0580026023.01.T01:intron 30.0%
CATTGCATGTTTGTTTATGT+TGG + Chr5:29308445-29308464 MsG0580026023.01.T01:intron 30.0%
CGATTACTACAAAACACTAA+AGG + Chr5:29307732-29307751 MsG0580026023.01.T01:CDS 30.0%
GACATTTGACATGTCTTTAA+TGG + Chr5:29309389-29309408 MsG0580026023.01.T01:intron 30.0%
GGTTGCATGTATATGAAAAT+TGG + Chr5:29308400-29308419 MsG0580026023.01.T01:intron 30.0%
TAAACACTTGTGAAAATGTC+TGG + Chr5:29308588-29308607 MsG0580026023.01.T01:intron 30.0%
TAGACATATCACAGTTCAAT+TGG + Chr5:29309862-29309881 MsG0580026023.01.T01:CDS 30.0%
TGAATTTGGAAAATGGTGAT+GGG + Chr5:29307968-29307987 MsG0580026023.01.T01:CDS 30.0%
TGCATTAGCATTAGGATTAA+GGG - Chr5:29308826-29308845 None:intergenic 30.0%
TTATAGGTTTAGTAATCAGC+AGG - Chr5:29310052-29310071 None:intergenic 30.0%
TTGAAGATACATATTCAACC+TGG + Chr5:29309638-29309657 MsG0580026023.01.T01:CDS 30.0%
! AATTAATTAGATTGGTCCCT+CGG - Chr5:29308191-29308210 None:intergenic 30.0%
! ACCATCTGATGTAATTTTTG+TGG + Chr5:29309721-29309740 MsG0580026023.01.T01:CDS 30.0%
! GTTTGTTTATGTTGGCTATT+AGG + Chr5:29308453-29308472 MsG0580026023.01.T01:intron 30.0%
! TGAATTTTGGATGGTTTACT+TGG + Chr5:29308937-29308956 MsG0580026023.01.T01:intron 30.0%
! TTCCAGAAGTGATATCTTTT+CGG - Chr5:29309801-29309820 None:intergenic 30.0%
!! AGGAAGGTGTAAAATTGTTT+TGG + Chr5:29309179-29309198 MsG0580026023.01.T01:intron 30.0%
!! GAAGGTGTAAAATTGTTTTG+GGG + Chr5:29309181-29309200 MsG0580026023.01.T01:intron 30.0%
!! GGAAGGTGTAAAATTGTTTT+GGG + Chr5:29309180-29309199 MsG0580026023.01.T01:intron 30.0%
!! GGTATTGGTTAATCTTATCT+GGG - Chr5:29307822-29307841 None:intergenic 30.0%
!!! AAGGTGTAAAATTGTTTTGG+GGG + Chr5:29309182-29309201 MsG0580026023.01.T01:intron 30.0%
!!! TGCTGTTATTATGCTACTTT+TGG + Chr5:29309030-29309049 MsG0580026023.01.T01:intron 30.0%
!!! TGTTGAGATTTTTGAGTCAA+AGG - Chr5:29307630-29307649 None:intergenic 30.0%
!!! TTACTAGTTTTGAAACAGGA+TGG + Chr5:29308532-29308551 MsG0580026023.01.T01:intron 30.0%
AAAGGAAGGTGAAAGTTGTA+AGG + Chr5:29308073-29308092 MsG0580026023.01.T01:CDS 35.0%
ACAAATGGTGCATTAGCATT+AGG - Chr5:29308834-29308853 None:intergenic 35.0%
ACCACATGCTATATTCAAGA+GGG + Chr5:29309754-29309773 MsG0580026023.01.T01:CDS 35.0%
ACTAAGAACTTCATAAGCCT+CGG - Chr5:29307899-29307918 None:intergenic 35.0%
AGATACATATTCAACCTGGT+TGG + Chr5:29309642-29309661 MsG0580026023.01.T01:CDS 35.0%
AGATTAACCAATACCCTTCA+AGG + Chr5:29307827-29307846 MsG0580026023.01.T01:CDS 35.0%
ATTGGATGATATTGTGACAC+CGG + Chr5:29309880-29309899 MsG0580026023.01.T01:CDS 35.0%
CTAACACATACATGTAGACA+CGG + Chr5:29309283-29309302 MsG0580026023.01.T01:intron 35.0%
CTTTGCTTGGATACATAAGT+TGG + Chr5:29309552-29309571 MsG0580026023.01.T01:intron 35.0%
GCATTAGCATTAGGATTAAG+GGG - Chr5:29308825-29308844 None:intergenic 35.0%
GTGAATTTGGAAAATGGTGA+TGG + Chr5:29307967-29307986 MsG0580026023.01.T01:CDS 35.0%
GTGCATTAGCATTAGGATTA+AGG - Chr5:29308827-29308846 None:intergenic 35.0%
TACTCACATGGAAAAAAGGA+AGG + Chr5:29309163-29309182 MsG0580026023.01.T01:intron 35.0%
TCAATATCCTCCTGTGAATT+TGG + Chr5:29307954-29307973 MsG0580026023.01.T01:CDS 35.0%
TGTGATATTGCTAAGAATCG+CGG + Chr5:29308248-29308267 MsG0580026023.01.T01:CDS 35.0%
TTATAAGGGTTGCAAAAGGA+AGG + Chr5:29308059-29308078 MsG0580026023.01.T01:CDS 35.0%
TTCAAGGAAACAAGAGTTTG+AGG + Chr5:29307855-29307874 MsG0580026023.01.T01:CDS 35.0%
! AGCTTTATAAGGGTTGCAAA+AGG + Chr5:29308055-29308074 MsG0580026023.01.T01:CDS 35.0%
! CAAACTCTTGTTTCCTTGAA+GGG - Chr5:29307855-29307874 None:intergenic 35.0%
! CATGTCTTTAATGGAAGTGT+TGG + Chr5:29309398-29309417 MsG0580026023.01.T01:intron 35.0%
! TCAAACTCTTGTTTCCTTGA+AGG - Chr5:29307856-29307875 None:intergenic 35.0%
! TCACCATTTTCCAAATTCAC+AGG - Chr5:29307967-29307986 None:intergenic 35.0%
!! AAATGGTGATGGGAGTAATA+TGG + Chr5:29307978-29307997 MsG0580026023.01.T01:CDS 35.0%
!! AATTTGGTGTGATGAGAGAA+GGG - Chr5:29307584-29307603 None:intergenic 35.0%
!! GGGTATTGGTTAATCTTATC+TGG - Chr5:29307823-29307842 None:intergenic 35.0%
!! TAATTTGGTGTGATGAGAGA+AGG - Chr5:29307585-29307604 None:intergenic 35.0%
!!! TGAGATTTTTGAGTCAAAGG+AGG - Chr5:29307627-29307646 None:intergenic 35.0%
AACCCTTATAAAGCTCCTCA+AGG - Chr5:29308050-29308069 None:intergenic 40.0%
AGGAATGTTCCTGATGAGTT+TGG + Chr5:29308093-29308112 MsG0580026023.01.T01:CDS 40.0%
ATAAGAACCGACTAATCCGA+GGG + Chr5:29308172-29308191 MsG0580026023.01.T01:intron 40.0%
ATGGTCTGGGAAGCTTATTT+AGG + Chr5:29308551-29308570 MsG0580026023.01.T01:intron 40.0%
ATTCAACCTGGTTGGAAGAA+GGG + Chr5:29309650-29309669 MsG0580026023.01.T01:CDS 40.0%
CATGCTATATTCAAGAGGGA+CGG + Chr5:29309758-29309777 MsG0580026023.01.T01:CDS 40.0%
CCTCCTGTGAATTTGGAAAA+TGG + Chr5:29307961-29307980 MsG0580026023.01.T01:CDS 40.0%
CTAAGATTTCCTCTCTTGCT+TGG - Chr5:29309953-29309972 None:intergenic 40.0%
CTCAACATAACAACCTTGGA+TGG + Chr5:29309839-29309858 MsG0580026023.01.T01:CDS 40.0%
GACCACATGCTATATTCAAG+AGG + Chr5:29309753-29309772 MsG0580026023.01.T01:CDS 40.0%
GACCGAAAAGATATCACTTC+TGG + Chr5:29309796-29309815 MsG0580026023.01.T01:CDS 40.0%
GACTCTCAACATAACAACCT+TGG + Chr5:29309835-29309854 MsG0580026023.01.T01:CDS 40.0%
GCGATTCTTAGCAATATCAC+AGG - Chr5:29308249-29308268 None:intergenic 40.0%
GGAATGTTCCTGATGAGTTT+GGG + Chr5:29308094-29308113 MsG0580026023.01.T01:CDS 40.0%
TATAAGAACCGACTAATCCG+AGG + Chr5:29308171-29308190 MsG0580026023.01.T01:intron 40.0%
TATTACATCCTCAAGTGTGC+AGG - Chr5:29309118-29309137 None:intergenic 40.0%
TATTCAACCTGGTTGGAAGA+AGG + Chr5:29309649-29309668 MsG0580026023.01.T01:CDS 40.0%
TCATAGATCTGACGCTTCTT+AGG - Chr5:29307925-29307944 None:intergenic 40.0%
TCCCTCTTGAATATAGCATG+TGG - Chr5:29309758-29309777 None:intergenic 40.0%
TGGAGTTGTTGAGAGTGATT+TGG + Chr5:29308017-29308036 MsG0580026023.01.T01:CDS 40.0%
TGTATCCAAGCAAAGCGAAA+AGG - Chr5:29309547-29309566 None:intergenic 40.0%
TGTGATATGTCTACCATCCA+AGG - Chr5:29309855-29309874 None:intergenic 40.0%
TTGAATGTAACCCCATGTGT+TGG + Chr5:29309332-29309351 MsG0580026023.01.T01:intron 40.0%
TTGCTCCTATAGGCTATCAT+GGG - Chr5:29308678-29308697 None:intergenic 40.0%
TTGGATGATATTGTGACACC+GGG + Chr5:29309881-29309900 MsG0580026023.01.T01:CDS 40.0%
TTTATTTAGTGGTTGTGCCG+CGG + Chr5:29308223-29308242 MsG0580026023.01.T01:CDS 40.0%
! AGCCTTGAGGAGCTTTATAA+GGG + Chr5:29308045-29308064 MsG0580026023.01.T01:CDS 40.0%
! CCATTTTCCAAATTCACAGG+AGG - Chr5:29307964-29307983 None:intergenic 40.0%
! GTCAAAGGAGGAGTGAATTT+TGG - Chr5:29307615-29307634 None:intergenic 40.0%
! TAGCCTTGAGGAGCTTTATA+AGG + Chr5:29308044-29308063 MsG0580026023.01.T01:CDS 40.0%
! TTGCTTGGATCCTTTGAAAG+TGG - Chr5:29309938-29309957 None:intergenic 40.0%
!! ATGGAGGTTGATGAAAGTGT+TGG + Chr5:29307997-29308016 MsG0580026023.01.T01:CDS 40.0%
!! TGAAGGTATGCCACTTTCAA+AGG + Chr5:29309925-29309944 MsG0580026023.01.T01:CDS 40.0%
!! TGATTTGGTATGTAGCCTTG+AGG + Chr5:29308032-29308051 MsG0580026023.01.T01:CDS 40.0%
!! TTTTGTTGTGGGGTCAAACT+TGG - Chr5:29310001-29310020 None:intergenic 40.0%
!!! AAAGTCACTTTTCCTGGGAA+AGG + Chr5:29309677-29309696 MsG0580026023.01.T01:CDS 40.0%
!!! AGTTTTGAAACAGGATGGTC+TGG + Chr5:29308537-29308556 MsG0580026023.01.T01:intron 40.0%
!!! GCACAAAAGTCACTTTTCCT+GGG + Chr5:29309672-29309691 MsG0580026023.01.T01:CDS 40.0%
!!! GTTTTGAAACAGGATGGTCT+GGG + Chr5:29308538-29308557 MsG0580026023.01.T01:intron 40.0%
!!! TTGTTTTGGGGGAGTTTTGT+TGG + Chr5:29309193-29309212 MsG0580026023.01.T01:intron 40.0%
AACCGCAATTGAAGCCTCAT+CGG - Chr5:29308284-29308303 None:intergenic 45.0%
AAGCAAAGCGAAAAGGAAGG+GGG - Chr5:29309540-29309559 None:intergenic 45.0%
ATCACCCCATGATAGCCTAT+AGG + Chr5:29308670-29308689 MsG0580026023.01.T01:intron 45.0%
CAAGCAAAGCGAAAAGGAAG+GGG - Chr5:29309541-29309560 None:intergenic 45.0%
CCAAGCAAAGCGAAAAGGAA+GGG - Chr5:29309542-29309561 None:intergenic 45.0%
CGTCAGATCTATGATCGCAA+TGG + Chr5:29307931-29307950 MsG0580026023.01.T01:CDS 45.0%
GAGGATTACCCAAACTCATC+AGG - Chr5:29308105-29308124 None:intergenic 45.0%
GGAAACTATCTTCCAGGATC+TGG + Chr5:29309698-29309717 MsG0580026023.01.T01:CDS 45.0%
GGAAGATAGTTTCCTTTCCC+AGG - Chr5:29309692-29309711 None:intergenic 45.0%
GGGAAAGGAAACTATCTTCC+AGG + Chr5:29309692-29309711 MsG0580026023.01.T01:CDS 45.0%
GTTGCTCCTATAGGCTATCA+TGG - Chr5:29308679-29308698 None:intergenic 45.0%
TAACAGCGACACCAACACAT+GGG - Chr5:29309346-29309365 None:intergenic 45.0%
TCAAAGGATCCAAGCAAGAG+AGG + Chr5:29309941-29309960 MsG0580026023.01.T01:CDS 45.0%
TCCAAGCAAAGCGAAAAGGA+AGG - Chr5:29309543-29309562 None:intergenic 45.0%
TCCTTGAAGGGTTCCTTGAA+GGG - Chr5:29307843-29307862 None:intergenic 45.0%
TGACAGCACAAGCAACAACA+TGG - Chr5:29308973-29308992 None:intergenic 45.0%
TGCTCCTATAGGCTATCATG+GGG - Chr5:29308677-29308696 None:intergenic 45.0%
TGTGACACCGGGATATGAAA+AGG + Chr5:29309892-29309911 MsG0580026023.01.T01:CDS 45.0%
TTCCTTGAAGGGTTCCTTGA+AGG - Chr5:29307844-29307863 None:intergenic 45.0%
! AAGGGTTCCTTGAAGGGTAT+TGG - Chr5:29307837-29307856 None:intergenic 45.0%
! TCACTTCTGGAAGCTCTTGT+TGG + Chr5:29309809-29309828 MsG0580026023.01.T01:CDS 45.0%
! TGAGGCTTCAATTGCGGTTT+TGG + Chr5:29308285-29308304 MsG0580026023.01.T01:intron 45.0%
!! TGGTGATGGGAGTAATATGG+AGG + Chr5:29307981-29308000 MsG0580026023.01.T01:CDS 45.0%
!!! GGCACAAAAGTCACTTTTCC+TGG + Chr5:29309671-29309690 MsG0580026023.01.T01:CDS 45.0%
AACAGCGACACCAACACATG+GGG - Chr5:29309345-29309364 None:intergenic 50.0%
ACATCAGATGGTCCAGATCC+TGG - Chr5:29309713-29309732 None:intergenic 50.0%
ACCCTTCAAGGAACCCTTCA+AGG + Chr5:29307839-29307858 MsG0580026023.01.T01:CDS 50.0%
AGCCGATGAGGCTTCAATTG+CGG + Chr5:29308279-29308298 MsG0580026023.01.T01:CDS 50.0%
CTAACAGCGACACCAACACA+TGG - Chr5:29309347-29309366 None:intergenic 50.0%
CTTAGCAATATCACAGGCCG+CGG - Chr5:29308243-29308262 None:intergenic 50.0%
GAAAAGGTCGTCGCTGATGA+AGG + Chr5:29309908-29309927 MsG0580026023.01.T01:CDS 50.0%
TGTTGTGGGGTCAAACTTGG+TGG - Chr5:29309998-29310017 None:intergenic 50.0%
TTTGTGCCCTTCTTCCAACC+AGG - Chr5:29309659-29309678 None:intergenic 50.0%
! CCCTTCCTTTTCGCTTTGCT+TGG + Chr5:29309539-29309558 MsG0580026023.01.T01:intron 50.0%
! GCGACGACCTTTTCATATCC+CGG - Chr5:29309902-29309921 None:intergenic 50.0%
!! GATTGGTCCCTCGGATTAGT+CGG - Chr5:29308182-29308201 None:intergenic 50.0%
GCGGTCAAATGAAGCCGATG+AGG + Chr5:29308267-29308286 MsG0580026023.01.T01:CDS 55.0%
GGCATGATCCTGCACACTTG+AGG + Chr5:29309107-29309126 MsG0580026023.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 29307577 29310252 29307577 ID=MsG0580026023.01;Name=MsG0580026023.01
Chr5 mRNA 29307577 29310252 29307577 ID=MsG0580026023.01.T01;Parent=MsG0580026023.01;Name=MsG0580026023.01.T01;_AED=0.29;_eAED=0.34;_QI=144|0|0.66|1|1|1|3|189|308
Chr5 exon 29307577 29308115 29307577 ID=MsG0580026023.01.T01:exon:33433;Parent=MsG0580026023.01.T01
Chr5 exon 29308220 29308300 29308220 ID=MsG0580026023.01.T01:exon:33434;Parent=MsG0580026023.01.T01
Chr5 exon 29309613 29310252 29309613 ID=MsG0580026023.01.T01:exon:33435;Parent=MsG0580026023.01.T01
Chr5 five_prime_UTR 29307577 29307720 29307577 ID=MsG0580026023.01.T01:five_prime_utr;Parent=MsG0580026023.01.T01
Chr5 CDS 29307721 29308115 29307721 ID=MsG0580026023.01.T01:cds;Parent=MsG0580026023.01.T01
Chr5 CDS 29308220 29308300 29308220 ID=MsG0580026023.01.T01:cds;Parent=MsG0580026023.01.T01
Chr5 CDS 29309613 29310063 29309613 ID=MsG0580026023.01.T01:cds;Parent=MsG0580026023.01.T01
Chr5 three_prime_UTR 29310064 29310252 29310064 ID=MsG0580026023.01.T01:three_prime_utr;Parent=MsG0580026023.01.T01
Gene Sequence

>MsG0580026023.01.T01

ATGGGTAATCACGATTACTACAAAACACTAAAGGTTAAGCGTGATGCAACCCTAGAAGATTTGAATAATTCATATAACAATTTAGTTATGAAATGGCACCCAGATAAGATTAACCAATACCCTTCAAGGAACCCTTCAAGGAAACAAGAGTTTGAGGCAAATTTTAAGAGAATTTCCGAGGCTTATGAAGTTCTTAGTGATCCTAAGAAGCGTCAGATCTATGATCGCAATGGTCAATATCCTCCTGTGAATTTGGAAAATGGTGATGGGAGTAATATGGAGGTTGATGAAAGTGTTGGAGTTGTTGAGAGTGATTTGGTATGTAGCCTTGAGGAGCTTTATAAGGGTTGCAAAAGGAAGGTGAAAGTTGTAAGGAATGTTCCTGATGAGTTTGGGGTTTTATTTAGTGGTTGTGCCGCGGCCTGTGATATTGCTAAGAATCGCGGTCAAATGAAGCCGATGAGGCTTCAATTGCGGAAGTTGAAGTGTGAAGAAGAAATCTTGAAGATACATATTCAACCTGGTTGGAAGAAGGGCACAAAAGTCACTTTTCCTGGGAAAGGAAACTATCTTCCAGGATCTGGACCATCTGATGTAATTTTTGTGGTGAATGAGAGACCACATGCTATATTCAAGAGGGACGGAAAAGATTTGATAATGACCGAAAAGATATCACTTCTGGAAGCTCTTGTTGGTAAGACTCTCAACATAACAACCTTGGATGGTAGACATATCACAGTTCAATTGGATGATATTGTGACACCGGGATATGAAAAGGTCGTCGCTGATGAAGGTATGCCACTTTCAAAGGATCCAAGCAAGAGAGGAAATCTTAGAATAAAGTTTAATGTTATGTATCCACCAAGTTTGACCCCACAACAAAAATATGATGTAAGAAGGATTTTGAATGATCCTGCTGATTACTAA

Protein sequence

>MsG0580026023.01.T01

MGNHDYYKTLKVKRDATLEDLNNSYNNLVMKWHPDKINQYPSRNPSRKQEFEANFKRISEAYEVLSDPKKRQIYDRNGQYPPVNLENGDGSNMEVDESVGVVESDLVCSLEELYKGCKRKVKVVRNVPDEFGVLFSGCAAACDIAKNRGQMKPMRLQLRKLKCEEEILKIHIQPGWKKGTKVTFPGKGNYLPGSGPSDVIFVVNERPHAIFKRDGKDLIMTEKISLLEALVGKTLNITTLDGRHITVQLDDIVTPGYEKVVADEGMPLSKDPSKRGNLRIKFNVMYPPSLTPQQKYDVRRILNDPADY*