AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023835.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023835.01.T01 MTR_8g103065 96.188 341 6 4 1 339 1 336 0.0 665
MsG0480023835.01.T01 MTR_8g103065 91.241 274 18 3 1 273 1 269 1.88e-172 480
MsG0480023835.01.T01 MTR_6g488100 62.640 356 83 16 1 339 1 323 8.01e-132 379
MsG0480023835.01.T01 MTR_6g488100 61.838 359 86 16 1 339 1 328 3.31e-131 377
MsG0480023835.01.T01 MTR_6g488100 59.396 298 72 15 1 281 1 266 2.10e-94 282
MsG0480023835.01.T01 MTR_2g101520 48.864 352 129 11 15 338 1 329 2.94e-92 278
MsG0480023835.01.T01 MTR_6g488100 58.423 279 69 14 1 262 1 249 4.72e-84 255
MsG0480023835.01.T01 MTR_2g011070 45.860 157 56 3 180 336 284 411 9.73e-36 134
MsG0480023835.01.T01 MTR_2g081820 47.059 153 52 3 184 336 310 433 2.87e-34 130
MsG0480023835.01.T01 MTR_2g081820 47.059 153 52 3 184 336 311 434 2.95e-34 130
MsG0480023835.01.T01 MTR_1g107185 47.973 148 59 3 186 333 138 267 2.14e-33 125
MsG0480023835.01.T01 MTR_3g112170 46.429 140 47 3 199 336 339 452 8.43e-33 127
MsG0480023835.01.T01 MTR_8g466800 43.452 168 66 2 172 339 306 444 2.92e-32 125
MsG0480023835.01.T01 MTR_1g094085 45.000 160 56 4 180 336 399 529 6.44e-31 122
MsG0480023835.01.T01 MTR_4g087300 38.043 184 68 4 149 332 13 150 1.09e-25 101
MsG0480023835.01.T01 MTR_4g087300 39.881 168 55 4 165 332 6 127 4.53e-25 99.0
MsG0480023835.01.T01 MTR_4g087300 38.043 184 66 5 149 332 13 148 1.01e-23 95.9
MsG0480023835.01.T01 MTR_8g466800 51.579 95 45 1 172 266 306 399 1.63e-21 94.7
MsG0480023835.01.T01 MTR_4g131160 28.889 135 83 3 200 321 212 346 4.56e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023835.01.T01 AT4G29100 44.965 427 127 20 1 339 1 407 3.11e-87 268
MsG0480023835.01.T01 AT2G20100 53.086 243 79 7 107 339 145 362 2.37e-66 213
MsG0480023835.01.T01 AT2G20100 44.637 289 79 8 107 339 145 408 4.10e-57 191
MsG0480023835.01.T01 AT4G29100 41.598 363 110 18 1 281 1 343 1.67e-55 185
MsG0480023835.01.T01 AT2G20100 50.279 179 60 6 107 281 145 298 4.29e-37 135
MsG0480023835.01.T01 AT2G20100 50.279 179 60 6 107 281 145 298 4.29e-37 135
MsG0480023835.01.T01 AT1G27660 48.466 163 49 5 184 337 316 452 7.50e-34 130
MsG0480023835.01.T01 AT3G20640 43.590 156 58 2 184 339 267 392 1.99e-32 125
MsG0480023835.01.T01 AT3G19500 45.946 148 49 1 186 333 140 256 3.28e-32 121
MsG0480023835.01.T01 AT3G20640 43.590 156 58 2 184 339 329 454 4.32e-32 125
MsG0480023835.01.T01 AT1G61660 42.614 176 70 3 161 336 242 386 5.18e-32 124
MsG0480023835.01.T01 AT1G61660 45.098 153 57 2 184 336 264 389 1.26e-31 122
MsG0480023835.01.T01 AT1G61660 45.098 153 57 2 184 336 264 389 1.26e-31 122
MsG0480023835.01.T01 AT2G31730 41.892 148 48 1 186 333 25 134 1.55e-27 105
MsG0480023835.01.T01 AT2G31730 41.892 148 48 1 186 333 25 134 1.55e-27 105
MsG0480023835.01.T01 AT4G21340 48.551 138 43 6 185 319 175 287 8.36e-26 105
MsG0480023835.01.T01 AT4G05170 47.328 131 51 4 185 315 40 152 9.81e-26 102
MsG0480023835.01.T01 AT1G05710 41.045 134 41 1 200 333 29 124 1.11e-25 100
MsG0480023835.01.T01 AT1G05710 41.045 134 41 1 200 333 37 132 1.30e-25 100
MsG0480023835.01.T01 AT1G05710 41.045 134 41 1 200 333 37 132 1.30e-25 100
MsG0480023835.01.T01 AT1G05710 41.045 134 41 1 200 333 37 132 1.30e-25 100
MsG0480023835.01.T01 AT1G05710 41.045 134 41 1 200 333 37 132 1.30e-25 100
MsG0480023835.01.T01 AT1G05710 41.045 134 41 1 200 333 37 132 1.30e-25 100
MsG0480023835.01.T01 AT1G05710 41.045 134 41 1 200 333 37 132 1.30e-25 100
MsG0480023835.01.T01 AT1G05710 41.045 134 41 1 200 333 37 132 1.30e-25 100
MsG0480023835.01.T01 AT4G05170 44.526 137 46 3 185 315 158 270 3.97e-25 103
MsG0480023835.01.T01 AT4G05170 44.526 137 46 3 185 315 133 245 4.04e-25 102
MsG0480023835.01.T01 AT4G05170 44.526 137 46 3 185 315 176 288 4.07e-25 103
MsG0480023835.01.T01 AT1G05710 42.963 135 59 3 200 333 29 146 1.55e-24 98.2
MsG0480023835.01.T01 AT1G05710 42.963 135 59 3 200 333 29 146 1.55e-24 98.2
MsG0480023835.01.T01 AT1G05710 42.963 135 59 3 200 333 37 154 1.85e-24 98.2
MsG0480023835.01.T01 AT1G05710 42.963 135 59 3 200 333 37 154 1.85e-24 98.2
MsG0480023835.01.T01 AT1G05710 42.963 135 59 3 200 333 37 154 1.85e-24 98.2
MsG0480023835.01.T01 AT1G05710 42.963 135 59 3 200 333 37 154 1.85e-24 98.2
MsG0480023835.01.T01 AT1G31050 42.308 156 61 4 186 339 305 433 3.31e-23 100
MsG0480023835.01.T01 AT1G31050 41.935 155 61 4 186 338 305 432 4.77e-23 99.8
MsG0480023835.01.T01 AT1G31050 41.935 155 61 4 186 338 309 436 5.52e-23 99.4
MsG0480023835.01.T01 AT4G05170 60.256 78 30 1 185 262 158 234 1.39e-21 92.4
MsG0480023835.01.T01 AT1G61660 59.036 83 34 0 184 266 264 346 4.32e-21 92.8
MsG0480023835.01.T01 AT1G61660 59.036 83 34 0 184 266 264 346 4.32e-21 92.8
MsG0480023835.01.T01 AT1G49830 40.800 125 42 2 210 334 134 226 1.02e-19 87.4
MsG0480023835.01.T01 AT1G49830 40.800 125 42 2 210 334 133 225 1.05e-19 87.4
MsG0480023835.01.T01 AT4G05170 67.797 59 19 0 185 243 158 216 1.47e-19 86.3
MsG0480023835.01.T01 AT4G05170 67.797 59 19 0 185 243 158 216 1.47e-19 86.3
MsG0480023835.01.T01 AT3G19500 60.294 68 27 0 186 253 140 207 2.17e-19 85.9
MsG0480023835.01.T01 AT3G20640 55.696 79 33 2 184 262 329 405 6.67e-19 87.4
MsG0480023835.01.T01 AT1G61660 35.333 150 68 3 187 336 247 367 1.14e-16 80.5
MsG0480023835.01.T01 AT3G20640 60.000 60 23 1 184 243 329 387 7.09e-15 75.5
MsG0480023835.01.T01 AT1G31050 55.738 61 26 1 186 245 305 365 3.97e-11 63.9
MsG0480023835.01.T01 AT1G31050 55.738 61 26 1 186 245 309 369 4.70e-11 63.9

Find 122 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTCCTCTTCCTTCT+TGG 0.083493 4:+90342813 MsG0480023835.01.T01:CDS
CTAGATTTAATGTAGATTTA+TGG 0.133124 4:+90346227 MsG0480023835.01.T01:three_prime_UTR
CACTATTCATTACCTCAATT+TGG 0.188016 4:-90345031 None:intergenic
TAATTGGATTTACAATTAAT+TGG 0.220168 4:+90345946 MsG0480023835.01.T01:three_prime_UTR
GGGGATTTCAGTAGATTAAT+TGG 0.223123 4:+90345930 MsG0480023835.01.T01:exon
AGCATATATTCATAAATATT+TGG 0.241615 4:+90345972 MsG0480023835.01.T01:three_prime_UTR
GGAGTTTGAAAATTAGAATT+AGG 0.248739 4:-90342776 None:intergenic
AGAGAAGATGCATGAGAATA+TGG 0.252234 4:-90342797 None:intergenic
ATTTGAGACCAAGTAGAATT+TGG 0.254844 4:-90343356 None:intergenic
CCTGATCCATTTCCCAAGTA+TGG 0.255945 4:-90345162 None:intergenic
GATTATTGGGCTCCTGCTTT+TGG 0.259979 4:+90345905 MsG0480023835.01.T01:CDS
ATGGTGTTCCACCAGTTGTT+AGG 0.275388 4:-90342698 None:intergenic
CATCAACTCGTTTCCCCATT+TGG 0.284889 4:+90344208 MsG0480023835.01.T01:CDS
TCTTTCTTGATGCTTCAAAT+AGG 0.285345 4:-90342531 None:intergenic
GTGACAATGGAGCTGATTAT+TGG 0.295295 4:+90345891 MsG0480023835.01.T01:CDS
CTTTCTTGATGCTTCAAATA+GGG 0.296957 4:-90342530 None:intergenic
TATACCTGACCAGGGTCTTC+AGG 0.304733 4:-90345395 None:intergenic
GAAACTTGTTGCACAGGATT+TGG 0.306086 4:-90343402 None:intergenic
GGCACTTAGCTTACCATACT+TGG 0.309481 4:+90345149 MsG0480023835.01.T01:intron
CAGGTTAGGAAGGAAAAGTT+AGG 0.313546 4:+90344166 MsG0480023835.01.T01:intron
GTAGTAGTGGAGAAGAAATT+AGG 0.320001 4:-90342752 None:intergenic
AAAAGCAATAAAGAAATTAA+AGG 0.324877 4:+90342336 MsG0480023835.01.T01:five_prime_UTR
CATACAAAGAGGCAATTAAT+TGG 0.333520 4:+90345998 MsG0480023835.01.T01:three_prime_UTR
ATTCCATTAGCTTAATTTAG+AGG 0.334453 4:+90346197 MsG0480023835.01.T01:three_prime_UTR
GCTATATATCAAATTATCTA+AGG 0.342905 4:+90346055 MsG0480023835.01.T01:three_prime_UTR
TGACCTCTAAATTAAGCTAA+TGG 0.354110 4:-90346200 None:intergenic
CAAAAGCAAGCGAGCTAGCT+AGG 0.361766 4:+90342270 MsG0480023835.01.T01:five_prime_UTR
AGCTTACCATACTTGGGAAA+TGG 0.367203 4:+90345156 MsG0480023835.01.T01:CDS
AATAATTAATGTTAGGTTCA+AGG 0.372540 4:+90345353 MsG0480023835.01.T01:intron
TCTGTCTTATTAGAATCTAT+TGG 0.375173 4:+90344987 MsG0480023835.01.T01:CDS
CCAGCCATCATTTGTTGCAC+TGG 0.375597 4:-90342671 None:intergenic
TGGTTGGTTAAGAAGCTATA+GGG 0.384219 4:-90342472 None:intergenic
CTCTTGTCTTTGTAGAATCT+AGG 0.384228 4:+90342597 MsG0480023835.01.T01:five_prime_UTR
TCAGTGAACAACTATGTCTA+TGG 0.389055 4:+90343311 MsG0480023835.01.T01:CDS
TATATATTTACCTTTCCAAA+TGG 0.397753 4:-90344223 None:intergenic
TATGGAAATGAAGAATTTCA+TGG 0.412434 4:+90343329 MsG0480023835.01.T01:CDS
TGACAATGGAGCTGATTATT+GGG 0.420176 4:+90345892 MsG0480023835.01.T01:CDS
ATTTGAGTTAATAATAATCA+TGG 0.425080 4:-90342404 None:intergenic
GATTGCTCATGATGCTATGC+AGG 0.429935 4:+90346080 MsG0480023835.01.T01:three_prime_UTR
GAGAAAGGCAGTTAGTGAAC+AGG 0.429996 4:+90345642 MsG0480023835.01.T01:CDS
AACACAATCCTCTGCTCCTC+AGG 0.430043 4:-90345835 None:intergenic
ATATATTTACCTTTCCAAAT+GGG 0.435272 4:-90344222 None:intergenic
GTGGTTGGTTAAGAAGCTAT+AGG 0.436252 4:-90342473 None:intergenic
ATCAGATCTATCTTCTGATC+AGG 0.442936 4:+90343481 MsG0480023835.01.T01:CDS
TTACCTCAATTTGGCTCTGA+AGG 0.445293 4:-90345022 None:intergenic
TGGTGTTCCACCAGTTGTTA+GGG 0.450899 4:-90342697 None:intergenic
TACAACTCAGTCTACATTCA+AGG 0.451223 4:+90343912 MsG0480023835.01.T01:CDS
TATCATAAAGTGAGAACAAA+AGG 0.451915 4:-90342244 None:intergenic
ATACCTGACCAGGGTCTTCA+GGG 0.453388 4:-90345394 None:intergenic
GAGGAGCAGAGGATTGTGTT+TGG 0.456499 4:+90345838 MsG0480023835.01.T01:CDS
CCATACTTGGGAAATGGATC+AGG 0.463750 4:+90345162 MsG0480023835.01.T01:CDS
GGATTTCTCTAACACTAAAA+CGG 0.468693 4:+90343442 MsG0480023835.01.T01:CDS
ATGGAACACCAAATTCTACT+TGG 0.470969 4:+90343348 MsG0480023835.01.T01:CDS
AAAAGCAAGCGAGCTAGCTA+GGG 0.472197 4:+90342271 MsG0480023835.01.T01:five_prime_UTR
ATTAGAATTAGGAGTAGTAG+TGG 0.475544 4:-90342765 None:intergenic
CAAATTAATGATTCTTAACA+AGG 0.478398 4:-90346145 None:intergenic
TCTTGTCTTTGTAGAATCTA+GGG 0.484970 4:+90342598 MsG0480023835.01.T01:five_prime_UTR
CTCACCAGTGCAACAAATGA+TGG 0.487107 4:+90342667 MsG0480023835.01.T01:CDS
TGAAAACTGTTTGAAGAGAA+AGG 0.488450 4:+90345627 MsG0480023835.01.T01:CDS
TCTATCAAAGTTTCTACAAA+GGG 0.490114 4:+90342503 MsG0480023835.01.T01:five_prime_UTR
CAATAAAGAAATTAAAGGTA+AGG 0.490950 4:+90342341 MsG0480023835.01.T01:five_prime_UTR
GTGGGGCATTGAAGAAAGCT+AGG 0.491010 4:+90343878 MsG0480023835.01.T01:CDS
ATTCCCTGAAGACCCTGGTC+AGG 0.494530 4:+90345391 MsG0480023835.01.T01:CDS
TTGATAGATGCTTCTGTGGT+TGG 0.497737 4:-90342488 None:intergenic
GAGAGGAAACAAAAGACAAA+AGG 0.499920 4:+90342371 MsG0480023835.01.T01:five_prime_UTR
TTAGGTTGATGATGATGATC+AGG 0.504746 4:-90342734 None:intergenic
GAAGGAACACTATTGTTGCT+TGG 0.508525 4:-90342448 None:intergenic
TATATTTACCTTTCCAAATG+GGG 0.511604 4:-90344221 None:intergenic
AGGTTAGGAAGGAAAAGTTA+GGG 0.515551 4:+90344167 MsG0480023835.01.T01:intron
CCAGTGCAACAAATGATGGC+TGG 0.516782 4:+90342671 MsG0480023835.01.T01:CDS
GTAATAGCTCTTCAGCTGGT+GGG 0.518744 4:+90343860 MsG0480023835.01.T01:CDS
TGGCTGGAAACCCTAACAAC+TGG 0.519094 4:+90342687 MsG0480023835.01.T01:CDS
ATTCCTTCAGAGCCAAATTG+AGG 0.519370 4:+90345019 MsG0480023835.01.T01:CDS
ACTGGTGAAACTTGTTGCAC+AGG 0.522258 4:-90343408 None:intergenic
GAAATCCAACATGCTACTAC+TGG 0.532832 4:-90343426 None:intergenic
ATGGGGAAACGAGTTGATGA+AGG 0.534464 4:-90344204 None:intergenic
AAGATCAACTTCCTGAGTCA+TGG 0.537926 4:+90342846 MsG0480023835.01.T01:CDS
TAATAGCTCTTCAGCTGGTG+GGG 0.544172 4:+90343861 MsG0480023835.01.T01:CDS
ACTTGTTGCACAGGATTTGG+AGG 0.545722 4:-90343399 None:intergenic
TTTCACCAGTAGTAGCATGT+TGG 0.549867 4:+90343421 MsG0480023835.01.T01:CDS
ATCAGGTGCAGGAGGGCGCA+TGG 0.552169 4:-90342717 None:intergenic
ACTTGCATTGTGCATGACAC+TGG 0.554874 4:-90345863 None:intergenic
AACTTTGATAGATGCTTCTG+TGG 0.560023 4:-90342492 None:intergenic
ATCTATCAAAGTTTCTACAA+AGG 0.563949 4:+90342502 MsG0480023835.01.T01:five_prime_UTR
TGTTTATTCCCTGAAGACCC+TGG 0.564013 4:+90345386 MsG0480023835.01.T01:CDS
GCACTTAGCTTACCATACTT+GGG 0.565697 4:+90345150 MsG0480023835.01.T01:CDS
TCAACAACAGAAGCATTTGA+AGG 0.568727 4:-90343269 None:intergenic
ACTCGTTTCCCCATTTGGAA+AGG 0.569019 4:+90344213 MsG0480023835.01.T01:CDS
AAGAAAGACCTGAGGAGCAG+AGG 0.569148 4:+90345827 MsG0480023835.01.T01:CDS
ACAAAGAGGCAATTAATTGG+TGG 0.574036 4:+90346001 MsG0480023835.01.T01:three_prime_UTR
CTGGAAACCCTAACAACTGG+TGG 0.576344 4:+90342690 MsG0480023835.01.T01:CDS
AAAGGTAAGGAAGAAAAGAG+AGG 0.579069 4:+90342354 MsG0480023835.01.T01:five_prime_UTR
TGATCAGAAGATAGATCTGA+TGG 0.584255 4:-90343479 None:intergenic
ATGCAAGTTGGAAGTGACAA+TGG 0.587148 4:+90345878 MsG0480023835.01.T01:CDS
AGGAGGTGACTCCATGACTC+AGG 0.588341 4:-90342857 None:intergenic
TGTAATAGCTCTTCAGCTGG+TGG 0.590012 4:+90343859 MsG0480023835.01.T01:CDS
TATAGCTAGAAAGAGATCAA+AGG 0.595358 4:+90342558 MsG0480023835.01.T01:five_prime_UTR
TGATGATGATGATCAGGTGC+AGG 0.595942 4:-90342728 None:intergenic
GAATACATATATACCTGACC+AGG 0.598652 4:-90345404 None:intergenic
AAGTGTAATAGCTCTTCAGC+TGG 0.599130 4:+90343856 MsG0480023835.01.T01:intron
TACTTGGTCTCAAATAGTGT+CGG 0.599741 4:+90343364 MsG0480023835.01.T01:CDS
TATTAATTAATTACATGAGG+AGG 0.601019 4:-90342874 None:intergenic
GGTTGGTTAAGAAGCTATAG+GGG 0.607374 4:-90342471 None:intergenic
GTGTCATGCACAATGCAAGT+TGG 0.614481 4:+90345866 MsG0480023835.01.T01:CDS
ATTGCTCATGATGCTATGCA+GGG 0.621849 4:+90346081 MsG0480023835.01.T01:three_prime_UTR
AAATTAATGATTCTTAACAA+GGG 0.624155 4:-90346144 None:intergenic
TGGGGAAACGAGTTGATGAA+GGG 0.629472 4:-90344203 None:intergenic
TGGGGCATTGAAGAAAGCTA+GGG 0.639392 4:+90343879 MsG0480023835.01.T01:CDS
CATAAAGTGAGAACAAAAGG+TGG 0.640977 4:-90342241 None:intergenic
TGATGATGATCAGGTGCAGG+AGG 0.659045 4:-90342725 None:intergenic
TGTGGTGTATGAAGAAGAGA+AGG 0.662571 4:+90343226 MsG0480023835.01.T01:CDS
AAAGCAAGCGAGCTAGCTAG+GGG 0.664333 4:+90342272 MsG0480023835.01.T01:five_prime_UTR
GGTTAGGAAGGAAAAGTTAG+GGG 0.666351 4:+90344168 MsG0480023835.01.T01:intron
TCAGAAGATAGATCTGATGG+TGG 0.669438 4:-90343476 None:intergenic
AATAGATTCTAATAAGACAG+AGG 0.674138 4:-90344985 None:intergenic
ACAACAGAAGCATTTGAAGG+AGG 0.678150 4:-90343266 None:intergenic
CAGGATTTGGAGGAAGACGA+AGG 0.695718 4:-90343389 None:intergenic
GTTGGTTAAGAAGCTATAGG+GGG 0.701910 4:-90342470 None:intergenic
GATGATGATCAGGTGCAGGA+GGG 0.703453 4:-90342724 None:intergenic
ATATTTGGAAGCATACAAAG+AGG 0.703645 4:+90345987 MsG0480023835.01.T01:three_prime_UTR
TGGAAAATATAGGAGTGGTG+TGG 0.714324 4:+90343208 MsG0480023835.01.T01:intron
AATACATATATACCTGACCA+GGG 0.715304 4:-90345403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATATAGATAAAAAAAAA+TGG + Chr4:90343704-90343723 MsG0480023835.01.T01:intron 10.0%
!! AAAAAAAGTTAAATTATGGA+CGG - Chr4:90343081-90343100 None:intergenic 15.0%
!! AAAAGCAATAAAGAAATTAA+AGG + Chr4:90342336-90342355 MsG0480023835.01.T01:five_prime_UTR 15.0%
!! AAATACAAATAAAAAAGCAA+AGG + Chr4:90342296-90342315 MsG0480023835.01.T01:five_prime_UTR 15.0%
!! AAATTAATGATTCTTAACAA+GGG - Chr4:90346147-90346166 None:intergenic 15.0%
!! AGCATATATTCATAAATATT+TGG + Chr4:90345972-90345991 MsG0480023835.01.T01:three_prime_UTR 15.0%
!! ATTTCTTAATACATATGAAA+TGG - Chr4:90344480-90344499 None:intergenic 15.0%
!! CATTATTAACAAATTATTGA+CGG - Chr4:90345763-90345782 None:intergenic 15.0%
!! TAATTGGATTTACAATTAAT+TGG + Chr4:90345946-90345965 MsG0480023835.01.T01:three_prime_UTR 15.0%
!!! ACAAAAATTATATATCCTTT+TGG + Chr4:90343766-90343785 MsG0480023835.01.T01:intron 15.0%
!!! ATTTGAGTTAATAATAATCA+TGG - Chr4:90342407-90342426 None:intergenic 15.0%
!!! CAAAAATTATATATCCTTTT+GGG + Chr4:90343767-90343786 MsG0480023835.01.T01:intron 15.0%
!!! CATTGTATTTTTTTACTTTA+TGG + Chr4:90345590-90345609 MsG0480023835.01.T01:intron 15.0%
!!! TGTTTTTTCAAAGTTATTAT+TGG - Chr4:90344316-90344335 None:intergenic 15.0%
!!! TTTGCTTTATGATAATTTTA+TGG + Chr4:90344928-90344947 MsG0480023835.01.T01:intron 15.0%
!! AAAAAGAAAAACAACATACA+TGG - Chr4:90344676-90344695 None:intergenic 20.0%
!! AATAATTAATGTTAGGTTCA+AGG + Chr4:90345353-90345372 MsG0480023835.01.T01:intron 20.0%
!! ACTATGATTTGATTATTTGA+AGG + Chr4:90343126-90343145 MsG0480023835.01.T01:intron 20.0%
!! ATATATTTACCTTTCCAAAT+GGG - Chr4:90344225-90344244 None:intergenic 20.0%
!! CAAATTAATGATTCTTAACA+AGG - Chr4:90346148-90346167 None:intergenic 20.0%
!! CAACATAATTACAAGTTAAT+TGG - Chr4:90345309-90345328 None:intergenic 20.0%
!! CAATAAAGAAATTAAAGGTA+AGG + Chr4:90342341-90342360 MsG0480023835.01.T01:five_prime_UTR 20.0%
!! CTAGATTTAATGTAGATTTA+TGG + Chr4:90346227-90346246 MsG0480023835.01.T01:three_prime_UTR 20.0%
!! GCTATATATCAAATTATCTA+AGG + Chr4:90346055-90346074 MsG0480023835.01.T01:three_prime_UTR 20.0%
!! GTGCAAAAAAAGTTAAATTA+TGG - Chr4:90343085-90343104 None:intergenic 20.0%
!! TATATATTTACCTTTCCAAA+TGG - Chr4:90344226-90344245 None:intergenic 20.0%
!! TATCATAAAGCAAAACTAAA+GGG - Chr4:90344922-90344941 None:intergenic 20.0%
!! TATTAATTAATTACATGAGG+AGG - Chr4:90342877-90342896 None:intergenic 20.0%
!! TTATCATAAAGCAAAACTAA+AGG - Chr4:90344923-90344942 None:intergenic 20.0%
!! TTCATATTAGAACAAAACTT+AGG + Chr4:90344264-90344283 MsG0480023835.01.T01:intron 20.0%
!! TTTGTTAAAAAGAGATTTCA+AGG - Chr4:90343977-90343996 None:intergenic 20.0%
!!! AACTTTGAAAAAACAAATTC+AGG + Chr4:90344321-90344340 MsG0480023835.01.T01:intron 20.0%
!!! ACTTAACTTTTACTCAAAAT+TGG + Chr4:90344818-90344837 MsG0480023835.01.T01:intron 20.0%
!!! ACTTGCATACATTTTTATTA+AGG - Chr4:90346109-90346128 None:intergenic 20.0%
!!! ATGTTGTTTTTCTTTTTTGA+TGG + Chr4:90344679-90344698 MsG0480023835.01.T01:intron 20.0%
!!! ATTATTCTTCTTTGTTTCAT+TGG - Chr4:90345239-90345258 None:intergenic 20.0%
!!! GTCTTAATTTTTGATGATTT+TGG + Chr4:90343188-90343207 MsG0480023835.01.T01:intron 20.0%
!!! TATATATGTATTCTTTTCCT+TGG + Chr4:90345414-90345433 MsG0480023835.01.T01:intron 20.0%
!!! TTATTCTTCTTTGTTTCATT+GGG - Chr4:90345238-90345257 None:intergenic 20.0%
!!! TTGATGATTTTGGAAAATAT+AGG + Chr4:90343198-90343217 MsG0480023835.01.T01:intron 20.0%
!!! TTTATGATAATTTTATGGTG+TGG + Chr4:90344933-90344952 MsG0480023835.01.T01:intron 20.0%
!!! TTTTCAAAGTTATTATTGGA+TGG - Chr4:90344312-90344331 None:intergenic 20.0%
! AAACGTCATATAATTTAGGA+CGG - Chr4:90344454-90344473 None:intergenic 25.0%
! AATAGATTCTAATAAGACAG+AGG - Chr4:90344988-90345007 None:intergenic 25.0%
! AGTAAGTTTCAATTGACAAT+TGG - Chr4:90343622-90343641 None:intergenic 25.0%
! ATCAATTCACATTAATACGT+AGG - Chr4:90344755-90344774 None:intergenic 25.0%
! ATCATAAAGCAAAACTAAAG+GGG - Chr4:90344921-90344940 None:intergenic 25.0%
! ATCTATCAAAGTTTCTACAA+AGG + Chr4:90342502-90342521 MsG0480023835.01.T01:five_prime_UTR 25.0%
! CAAAGGAAAGTAAGAAAAAA+AGG + Chr4:90342313-90342332 MsG0480023835.01.T01:five_prime_UTR 25.0%
! CATGTGTGTTAAATTATGAT+TGG + Chr4:90344704-90344723 MsG0480023835.01.T01:intron 25.0%
! GGAGTTTGAAAATTAGAATT+AGG - Chr4:90342779-90342798 None:intergenic 25.0%
! GGGTATTAATTAATTACATG+AGG - Chr4:90342880-90342899 None:intergenic 25.0%
! GTGACACACTTAATATTAAT+CGG - Chr4:90344409-90344428 None:intergenic 25.0%
! TAGCAATCTTAAATTTGCAT+TGG + Chr4:90344856-90344875 MsG0480023835.01.T01:intron 25.0%
! TATATTTACCTTTCCAAATG+GGG - Chr4:90344224-90344243 None:intergenic 25.0%
! TATCATAAAGTGAGAACAAA+AGG - Chr4:90342247-90342266 None:intergenic 25.0%
! TATGGAAATGAAGAATTTCA+TGG + Chr4:90343329-90343348 MsG0480023835.01.T01:CDS 25.0%
! TCTATCAAAGTTTCTACAAA+GGG + Chr4:90342503-90342522 MsG0480023835.01.T01:five_prime_UTR 25.0%
! TGAAAATTCCTCAAACTTAA+TGG - Chr4:90345442-90345461 None:intergenic 25.0%
! TGACACACTTAATATTAATC+GGG - Chr4:90344408-90344427 None:intergenic 25.0%
! TTAAAAAGAGATTTCAAGGT+TGG - Chr4:90343973-90343992 None:intergenic 25.0%
!! AAGAAAAAAGGTATGAATAG+AGG + Chr4:90342629-90342648 MsG0480023835.01.T01:exon 25.0%
!! AAGTTTGAGGAATTTTCATT+TGG + Chr4:90345444-90345463 MsG0480023835.01.T01:intron 25.0%
!! ATTCCATTAGCTTAATTTAG+AGG + Chr4:90346197-90346216 MsG0480023835.01.T01:three_prime_UTR 25.0%
!! TCCTAAATTATATGACGTTT+TGG + Chr4:90344454-90344473 MsG0480023835.01.T01:intron 25.0%
!! TCTGTCTTATTAGAATCTAT+TGG + Chr4:90344987-90345006 MsG0480023835.01.T01:CDS 25.0%
!!! AACTTTTTTTGCACACTTAA+TGG + Chr4:90343091-90343110 MsG0480023835.01.T01:intron 25.0%
!!! TCCAACTTTTTTTTGGAAAA+CGG + Chr4:90343663-90343682 MsG0480023835.01.T01:intron 25.0%
!!! TTTTGACTGTCTTGTAAATT+AGG + Chr4:90345787-90345806 MsG0480023835.01.T01:intron 25.0%
AAAAAGAAAAGAAAGACCTG+AGG + Chr4:90345819-90345838 MsG0480023835.01.T01:CDS 30.0%
AACACAGAAATTAACCCAAA+AGG - Chr4:90343784-90343803 None:intergenic 30.0%
AATACATATATACCTGACCA+GGG - Chr4:90345406-90345425 None:intergenic 30.0%
AATGAGAATTTGAGTCATCT+CGG - Chr4:90345574-90345593 None:intergenic 30.0%
ACACACTTAATATTAATCGG+GGG - Chr4:90344406-90344425 None:intergenic 30.0%
AGGGAAATTGAGAAGAAAAA+AGG + Chr4:90342617-90342636 MsG0480023835.01.T01:five_prime_UTR 30.0%
AGTGTTAGAGAAACAAAAAC+TGG - Chr4:90343026-90343045 None:intergenic 30.0%
ATCAATTGTGAGAGTTATTG+CGG + Chr4:90344596-90344615 MsG0480023835.01.T01:intron 30.0%
ATTAGAATTAGGAGTAGTAG+TGG - Chr4:90342768-90342787 None:intergenic 30.0%
ATTGAGGTAATGAATAGTGA+TGG + Chr4:90345035-90345054 MsG0480023835.01.T01:intron 30.0%
CAAGTATATGAAACTTAAGC+TGG - Chr4:90345539-90345558 None:intergenic 30.0%
CACTATTCATTACCTCAATT+TGG - Chr4:90345034-90345053 None:intergenic 30.0%
CATACAAAGAGGCAATTAAT+TGG + Chr4:90345998-90346017 MsG0480023835.01.T01:three_prime_UTR 30.0%
CTTTCTTGATGCTTCAAATA+GGG - Chr4:90342533-90342552 None:intergenic 30.0%
GACACACTTAATATTAATCG+GGG - Chr4:90344407-90344426 None:intergenic 30.0%
GCCAAAACGTCATATAATTT+AGG - Chr4:90344458-90344477 None:intergenic 30.0%
GGATTTCTCTAACACTAAAA+CGG + Chr4:90343442-90343461 MsG0480023835.01.T01:CDS 30.0%
TATAGCTAGAAAGAGATCAA+AGG + Chr4:90342558-90342577 MsG0480023835.01.T01:five_prime_UTR 30.0%
TCTTGTCTTTGTAGAATCTA+GGG + Chr4:90342598-90342617 MsG0480023835.01.T01:five_prime_UTR 30.0%
TCTTTCTTGATGCTTCAAAT+AGG - Chr4:90342534-90342553 None:intergenic 30.0%
TGAAAACTGTTTGAAGAGAA+AGG + Chr4:90345627-90345646 MsG0480023835.01.T01:CDS 30.0%
TGACCTCTAAATTAAGCTAA+TGG - Chr4:90346203-90346222 None:intergenic 30.0%
! ACCGTTTTCCAAAAAAAAGT+TGG - Chr4:90343667-90343686 None:intergenic 30.0%
! ATATTTGGAAGCATACAAAG+AGG + Chr4:90345987-90346006 MsG0480023835.01.T01:three_prime_UTR 30.0%
! ATTTGAGACCAAGTAGAATT+TGG - Chr4:90343359-90343378 None:intergenic 30.0%
! GTTTTCCAAAAAAAAGTTGG+AGG - Chr4:90343664-90343683 None:intergenic 30.0%
! TCTTGATTTTCATTCCAAGA+AGG - Chr4:90342830-90342849 None:intergenic 30.0%
! TTGATCTTCTCTTCATTTTC+AGG + Chr4:90344147-90344166 MsG0480023835.01.T01:intron 30.0%
!! GATTTTGGAAAATATAGGAG+TGG + Chr4:90343203-90343222 MsG0480023835.01.T01:intron 30.0%
!!! TTTGTCCTCCAACTTTTTTT+TGG + Chr4:90343656-90343675 MsG0480023835.01.T01:intron 30.0%
AAAGCAAAACTAAAGGGGAT+GGG - Chr4:90344916-90344935 None:intergenic 35.0%
AAAGGTAAGGAAGAAAAGAG+AGG + Chr4:90342354-90342373 MsG0480023835.01.T01:five_prime_UTR 35.0%
AACTTTGATAGATGCTTCTG+TGG - Chr4:90342495-90342514 None:intergenic 35.0%
ACAAAGAGGCAATTAATTGG+TGG + Chr4:90346001-90346020 MsG0480023835.01.T01:three_prime_UTR 35.0%
ACACACACAAACATCATATG+TGG + Chr4:90344000-90344019 MsG0480023835.01.T01:intron 35.0%
AGAGAAGATGCATGAGAATA+TGG - Chr4:90342800-90342819 None:intergenic 35.0%
AGGTTAGGAAGGAAAAGTTA+GGG + Chr4:90344167-90344186 MsG0480023835.01.T01:intron 35.0%
ATCAGATCTATCTTCTGATC+AGG + Chr4:90343481-90343500 MsG0480023835.01.T01:CDS 35.0%
ATGGAACACCAAATTCTACT+TGG + Chr4:90343348-90343367 MsG0480023835.01.T01:CDS 35.0%
ATTTATACACCCAACAGTCA+GGG - Chr4:90345729-90345748 None:intergenic 35.0%
CACACACAAACATCATATGT+GGG + Chr4:90344001-90344020 MsG0480023835.01.T01:intron 35.0%
CACACTTAATATTAATCGGG+GGG - Chr4:90344405-90344424 None:intergenic 35.0%
CATAAAGTGAGAACAAAAGG+TGG - Chr4:90342244-90342263 None:intergenic 35.0%
CTCTTGTCTTTGTAGAATCT+AGG + Chr4:90342597-90342616 MsG0480023835.01.T01:five_prime_UTR 35.0%
GAATACATATATACCTGACC+AGG - Chr4:90345407-90345426 None:intergenic 35.0%
GAGAGGAAACAAAAGACAAA+AGG + Chr4:90342371-90342390 MsG0480023835.01.T01:five_prime_UTR 35.0%
GAGTGATTGAGAAAGAGAAA+GGG - Chr4:90342900-90342919 None:intergenic 35.0%
GGGGATTTCAGTAGATTAAT+TGG + Chr4:90345930-90345949 MsG0480023835.01.T01:exon 35.0%
TAAAGCAAAACTAAAGGGGA+TGG - Chr4:90344917-90344936 None:intergenic 35.0%
TACAACTCAGTCTACATTCA+AGG + Chr4:90343912-90343931 MsG0480023835.01.T01:CDS 35.0%
TACTTGGTCTCAAATAGTGT+CGG + Chr4:90343364-90343383 MsG0480023835.01.T01:CDS 35.0%
TCAATTGTGAGAGTTATTGC+GGG + Chr4:90344597-90344616 MsG0480023835.01.T01:intron 35.0%
TCAGTGAACAACTATGTCTA+TGG + Chr4:90343311-90343330 MsG0480023835.01.T01:CDS 35.0%
TGACAATGGAGCTGATTATT+GGG + Chr4:90345892-90345911 MsG0480023835.01.T01:CDS 35.0%
TGAGTGATTGAGAAAGAGAA+AGG - Chr4:90342901-90342920 None:intergenic 35.0%
TGATCAGAAGATAGATCTGA+TGG - Chr4:90343482-90343501 None:intergenic 35.0%
! GTAGTAGTGGAGAAGAAATT+AGG - Chr4:90342755-90342774 None:intergenic 35.0%
! GTCATATAATTTAGGACGGA+GGG - Chr4:90344450-90344469 None:intergenic 35.0%
! TGGTTGGTTAAGAAGCTATA+GGG - Chr4:90342475-90342494 None:intergenic 35.0%
! TTTTCATTCCAAGAAGGAAG+AGG - Chr4:90342824-90342843 None:intergenic 35.0%
!! TCAACAACAGAAGCATTTGA+AGG - Chr4:90343272-90343291 None:intergenic 35.0%
!! TTAGGTTGATGATGATGATC+AGG - Chr4:90342737-90342756 None:intergenic 35.0%
!!! CTTCTCTTCATTTTCAGGTT+AGG + Chr4:90344152-90344171 MsG0480023835.01.T01:intron 35.0%
!!! TCTTCATTTTCAGGTTAGGA+AGG + Chr4:90344156-90344175 MsG0480023835.01.T01:intron 35.0%
AAGATCAACTTCCTGAGTCA+TGG + Chr4:90342846-90342865 MsG0480023835.01.T01:CDS 40.0%
AAGTGTAATAGCTCTTCAGC+TGG + Chr4:90343856-90343875 MsG0480023835.01.T01:intron 40.0%
AGCTTACCATACTTGGGAAA+TGG + Chr4:90345156-90345175 MsG0480023835.01.T01:CDS 40.0%
ATTCCTTCAGAGCCAAATTG+AGG + Chr4:90345019-90345038 MsG0480023835.01.T01:CDS 40.0%
ATTGCTCATGATGCTATGCA+GGG + Chr4:90346081-90346100 MsG0480023835.01.T01:three_prime_UTR 40.0%
CAATTGTGAGAGTTATTGCG+GGG + Chr4:90344598-90344617 MsG0480023835.01.T01:intron 40.0%
CAGGTTAGGAAGGAAAAGTT+AGG + Chr4:90344166-90344185 MsG0480023835.01.T01:intron 40.0%
CATTTATACACCCAACAGTC+AGG - Chr4:90345730-90345749 None:intergenic 40.0%
CCTTGGATCCATTAAGTTTG+AGG + Chr4:90345431-90345450 MsG0480023835.01.T01:intron 40.0%
CTAATTGCATGTGCAAGCTT+AGG + Chr4:90345279-90345298 MsG0480023835.01.T01:intron 40.0%
CTATCGACGGAAATTAGTGA+TGG + Chr4:90342983-90343002 MsG0480023835.01.T01:intron 40.0%
GAAATCCAACATGCTACTAC+TGG - Chr4:90343429-90343448 None:intergenic 40.0%
GAAGGAACACTATTGTTGCT+TGG - Chr4:90342451-90342470 None:intergenic 40.0%
GCACTTAGCTTACCATACTT+GGG + Chr4:90345150-90345169 MsG0480023835.01.T01:CDS 40.0%
GCTGTAACTCTTGTCTTTCT+TGG + Chr4:90344023-90344042 MsG0480023835.01.T01:intron 40.0%
GGTTAGGAAGGAAAAGTTAG+GGG + Chr4:90344168-90344187 MsG0480023835.01.T01:intron 40.0%
GTGACAATGGAGCTGATTAT+TGG + Chr4:90345891-90345910 MsG0480023835.01.T01:CDS 40.0%
GTTGGTTAAGAAGCTATAGG+GGG - Chr4:90342473-90342492 None:intergenic 40.0%
TCAGAAGATAGATCTGATGG+TGG - Chr4:90343479-90343498 None:intergenic 40.0%
TGGAAAATATAGGAGTGGTG+TGG + Chr4:90343208-90343227 MsG0480023835.01.T01:intron 40.0%
TGTGGTGTATGAAGAAGAGA+AGG + Chr4:90343226-90343245 MsG0480023835.01.T01:CDS 40.0%
TTGATAGATGCTTCTGTGGT+TGG - Chr4:90342491-90342510 None:intergenic 40.0%
TTTATACACCCAACAGTCAG+GGG - Chr4:90345728-90345747 None:intergenic 40.0%
TTTCACCAGTAGTAGCATGT+TGG + Chr4:90343421-90343440 MsG0480023835.01.T01:CDS 40.0%
! AAGCTGAGTTGAACTATCGA+CGG + Chr4:90342970-90342989 MsG0480023835.01.T01:intron 40.0%
! ATGCAAGTTGGAAGTGACAA+TGG + Chr4:90345878-90345897 MsG0480023835.01.T01:CDS 40.0%
! CCTCAAACTTAATGGATCCA+AGG - Chr4:90345434-90345453 None:intergenic 40.0%
! CGTCATATAATTTAGGACGG+AGG - Chr4:90344451-90344470 None:intergenic 40.0%
! GGTTGGTTAAGAAGCTATAG+GGG - Chr4:90342474-90342493 None:intergenic 40.0%
! GTGGTTGGTTAAGAAGCTAT+AGG - Chr4:90342476-90342495 None:intergenic 40.0%
!! ACAACAGAAGCATTTGAAGG+AGG - Chr4:90343269-90343288 None:intergenic 40.0%
!! GAAACTTGTTGCACAGGATT+TGG - Chr4:90343405-90343424 None:intergenic 40.0%
!! TTACCTCAATTTGGCTCTGA+AGG - Chr4:90345025-90345044 None:intergenic 40.0%
!!! TTCTCTTTACTTTTTCCCCG+TGG + Chr4:90345118-90345137 MsG0480023835.01.T01:intron 40.0%
AAAAGCAAGCGAGCTAGCTA+GGG + Chr4:90342271-90342290 MsG0480023835.01.T01:five_prime_UTR 45.0%
ACTCGTTTCCCCATTTGGAA+AGG + Chr4:90344213-90344232 MsG0480023835.01.T01:CDS 45.0%
ACTTGCATTGTGCATGACAC+TGG - Chr4:90345866-90345885 None:intergenic 45.0%
ATGGTGTTCCACCAGTTGTT+AGG - Chr4:90342701-90342720 None:intergenic 45.0%
CATCAACTCGTTTCCCCATT+TGG + Chr4:90344208-90344227 MsG0480023835.01.T01:CDS 45.0%
CCATACTTGGGAAATGGATC+AGG + Chr4:90345162-90345181 MsG0480023835.01.T01:CDS 45.0%
CCTGATCCATTTCCCAAGTA+TGG - Chr4:90345165-90345184 None:intergenic 45.0%
CTCACCAGTGCAACAAATGA+TGG + Chr4:90342667-90342686 MsG0480023835.01.T01:CDS 45.0%
CTTCTCTTCCTCTTCCTTCT+TGG + Chr4:90342813-90342832 MsG0480023835.01.T01:CDS 45.0%
GAGAAAGGCAGTTAGTGAAC+AGG + Chr4:90345642-90345661 MsG0480023835.01.T01:CDS 45.0%
GATTGCTCATGATGCTATGC+AGG + Chr4:90346080-90346099 MsG0480023835.01.T01:three_prime_UTR 45.0%
GGCACTTAGCTTACCATACT+TGG + Chr4:90345149-90345168 MsG0480023835.01.T01:intron 45.0%
GTAATAGCTCTTCAGCTGGT+GGG + Chr4:90343860-90343879 MsG0480023835.01.T01:CDS 45.0%
GTGTCATGCACAATGCAAGT+TGG + Chr4:90345866-90345885 MsG0480023835.01.T01:CDS 45.0%
GTTAAGAAGCTATAGGGGGA+AGG - Chr4:90342469-90342488 None:intergenic 45.0%
TAATAGCTCTTCAGCTGGTG+GGG + Chr4:90343861-90343880 MsG0480023835.01.T01:CDS 45.0%
TGGTGTTCCACCAGTTGTTA+GGG - Chr4:90342700-90342719 None:intergenic 45.0%
TGTAATAGCTCTTCAGCTGG+TGG + Chr4:90343859-90343878 MsG0480023835.01.T01:CDS 45.0%
TGTTTATTCCCTGAAGACCC+TGG + Chr4:90345386-90345405 MsG0480023835.01.T01:CDS 45.0%
TTATACACCCAACAGTCAGG+GGG - Chr4:90345727-90345746 None:intergenic 45.0%
! ACTTGTTGCACAGGATTTGG+AGG - Chr4:90343402-90343421 None:intergenic 45.0%
! GATTATTGGGCTCCTGCTTT+TGG + Chr4:90345905-90345924 MsG0480023835.01.T01:CDS 45.0%
! TGATGATGATGATCAGGTGC+AGG - Chr4:90342731-90342750 None:intergenic 45.0%
!! ACTGGTGAAACTTGTTGCAC+AGG - Chr4:90343411-90343430 None:intergenic 45.0%
!! ATGGGGAAACGAGTTGATGA+AGG - Chr4:90344207-90344226 None:intergenic 45.0%
!! TGGGGAAACGAGTTGATGAA+GGG - Chr4:90344206-90344225 None:intergenic 45.0%
!! TGGGGCATTGAAGAAAGCTA+GGG + Chr4:90343879-90343898 MsG0480023835.01.T01:CDS 45.0%
!! ATTATTTAATAATTAATGTT+AGG + Chr4:90345346-90345365 MsG0480023835.01.T01:intron 5.0%
!! TAATATGAATTTAATAAATT+AGG - Chr4:90344253-90344272 None:intergenic 5.0%
!!! AAATATAATTAATTTTGTAT+AGG + Chr4:90344496-90344515 MsG0480023835.01.T01:intron 5.0%
!!! ACTTTATTTTATTTTTTTAA+TGG + Chr4:90342945-90342964 MsG0480023835.01.T01:intron 5.0%
AAAGCAAGCGAGCTAGCTAG+GGG + Chr4:90342272-90342291 MsG0480023835.01.T01:five_prime_UTR 50.0%
AACACAATCCTCTGCTCCTC+AGG - Chr4:90345838-90345857 None:intergenic 50.0%
AAGAAAGACCTGAGGAGCAG+AGG + Chr4:90345827-90345846 MsG0480023835.01.T01:CDS 50.0%
ATACCTGACCAGGGTCTTCA+GGG - Chr4:90345397-90345416 None:intergenic 50.0%
CAAAAGCAAGCGAGCTAGCT+AGG + Chr4:90342270-90342289 MsG0480023835.01.T01:five_prime_UTR 50.0%
CAGGATTTGGAGGAAGACGA+AGG - Chr4:90343392-90343411 None:intergenic 50.0%
CCAGTGCAACAAATGATGGC+TGG + Chr4:90342671-90342690 MsG0480023835.01.T01:CDS 50.0%
CTAAGTGCCTGCATGATCCA+CGG - Chr4:90345138-90345157 None:intergenic 50.0%
CTGGAAACCCTAACAACTGG+TGG + Chr4:90342690-90342709 MsG0480023835.01.T01:CDS 50.0%
GAGGAGCAGAGGATTGTGTT+TGG + Chr4:90345838-90345857 MsG0480023835.01.T01:CDS 50.0%
GATGATGATCAGGTGCAGGA+GGG - Chr4:90342727-90342746 None:intergenic 50.0%
GGGACTGAGTGAGTTTCATG+TGG + Chr4:90344618-90344637 MsG0480023835.01.T01:intron 50.0%
TAAGTGCCTGCATGATCCAC+GGG - Chr4:90345137-90345156 None:intergenic 50.0%
TATACCTGACCAGGGTCTTC+AGG - Chr4:90345398-90345417 None:intergenic 50.0%
TGAAATCCCCCACCAAAAGC+AGG - Chr4:90345920-90345939 None:intergenic 50.0%
TGGCTGGAAACCCTAACAAC+TGG + Chr4:90342687-90342706 MsG0480023835.01.T01:CDS 50.0%
! CCAGCCATCATTTGTTGCAC+TGG - Chr4:90342674-90342693 None:intergenic 50.0%
! TGATGATGATCAGGTGCAGG+AGG - Chr4:90342728-90342747 None:intergenic 50.0%
! TTTTTCCCCGTGGATCATGC+AGG + Chr4:90345128-90345147 MsG0480023835.01.T01:intron 50.0%
!! ATTGGGCTCCTGCTTTTGGT+GGG + Chr4:90345909-90345928 MsG0480023835.01.T01:CDS 50.0%
!! GTGGGGCATTGAAGAAAGCT+AGG + Chr4:90343878-90343897 MsG0480023835.01.T01:CDS 50.0%
!! TATTGGGCTCCTGCTTTTGG+TGG + Chr4:90345908-90345927 MsG0480023835.01.T01:CDS 50.0%
AAGTGCCTGCATGATCCACG+GGG - Chr4:90345136-90345155 None:intergenic 55.0%
AGGAGGTGACTCCATGACTC+AGG - Chr4:90342860-90342879 None:intergenic 55.0%
ATTCCCTGAAGACCCTGGTC+AGG + Chr4:90345391-90345410 MsG0480023835.01.T01:CDS 55.0%
TTCACGTCCCCCTGACTGTT+GGG + Chr4:90345717-90345736 MsG0480023835.01.T01:intron 55.0%
!! TTGGGCTCCTGCTTTTGGTG+GGG + Chr4:90345910-90345929 MsG0480023835.01.T01:CDS 55.0%
GTTCACGTCCCCCTGACTGT+TGG + Chr4:90345716-90345735 MsG0480023835.01.T01:intron 60.0%
!! TGGGCTCCTGCTTTTGGTGG+GGG + Chr4:90345911-90345930 MsG0480023835.01.T01:CDS 60.0%
! ATCAGGTGCAGGAGGGCGCA+TGG - Chr4:90342720-90342739 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 90342226 90346277 90342226 ID=MsG0480023835.01;Name=MsG0480023835.01
Chr4 mRNA 90342226 90346277 90342226 ID=MsG0480023835.01.T01;Parent=MsG0480023835.01;Name=MsG0480023835.01.T01;_AED=0.29;_eAED=0.29;_QI=415|1|1|1|1|1|9|334|339
Chr4 exon 90342226 90342882 90342226 ID=MsG0480023835.01.T01:exon:7493;Parent=MsG0480023835.01.T01
Chr4 exon 90343220 90343502 90343220 ID=MsG0480023835.01.T01:exon:7494;Parent=MsG0480023835.01.T01
Chr4 exon 90343859 90343933 90343859 ID=MsG0480023835.01.T01:exon:7495;Parent=MsG0480023835.01.T01
Chr4 exon 90344169 90344234 90344169 ID=MsG0480023835.01.T01:exon:7496;Parent=MsG0480023835.01.T01
Chr4 exon 90344975 90345040 90344975 ID=MsG0480023835.01.T01:exon:7497;Parent=MsG0480023835.01.T01
Chr4 exon 90345150 90345212 90345150 ID=MsG0480023835.01.T01:exon:7498;Parent=MsG0480023835.01.T01
Chr4 exon 90345368 90345412 90345368 ID=MsG0480023835.01.T01:exon:7499;Parent=MsG0480023835.01.T01
Chr4 exon 90345619 90345663 90345619 ID=MsG0480023835.01.T01:exon:7500;Parent=MsG0480023835.01.T01
Chr4 exon 90345809 90346277 90345809 ID=MsG0480023835.01.T01:exon:7501;Parent=MsG0480023835.01.T01
Chr4 five_prime_UTR 90342226 90342640 90342226 ID=MsG0480023835.01.T01:five_prime_utr;Parent=MsG0480023835.01.T01
Chr4 CDS 90342641 90342882 90342641 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 CDS 90343220 90343502 90343220 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 CDS 90343859 90343933 90343859 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 CDS 90344169 90344234 90344169 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 CDS 90344975 90345040 90344975 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 CDS 90345150 90345212 90345150 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 CDS 90345368 90345412 90345368 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 CDS 90345619 90345663 90345619 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 CDS 90345809 90345943 90345809 ID=MsG0480023835.01.T01:cds;Parent=MsG0480023835.01.T01
Chr4 three_prime_UTR 90345944 90346277 90345944 ID=MsG0480023835.01.T01:three_prime_utr;Parent=MsG0480023835.01.T01
Gene Sequence

>MsG0480023835.01.T01

ATGAATAGAGGTGTTTATCTGCAAAGCTCACCAGTGCAACAAATGATGGCTGGAAACCCTAACAACTGGTGGAACACCATGCGCCCTCCTGCACCTGATCATCATCATCAACCTAATTTCTTCTCCACTACTACTCCTAATTCTAATTTTCAAACTCCATATTCTCATGCATCTTCTCTTCCTCTTCCTTCTTGGAATGAAAATCAAGATCAACTTCCTGAGTCATGGAGTCACCTCCTCATGAGTGGTGTGGTGTATGAAGAAGAGAAGGCTAGTATGCTAAGTCAGCCTCCTTCAAATGCTTCTGTTGTTGATCATGTCAAACAAGAAAGTTCAGTGAACAACTATGTCTATGGAAATGAAGAATTTCATGGAACACCAAATTCTACTTGGTCTCAAATAGTGTCGGTGCCTTCGTCTTCCTCCAAATCCTGTGCAACAAGTTTCACCAGTAGTAGCATGTTGGATTTCTCTAACACTAAAACGGATATAAGATCTCCACCATCAGATCTATCTTCTGATCAGTGTAATAGCTCTTCAGCTGGTGGGGCATTGAAGAAAGCTAGGGTTCAATCATCTACAACTCAGTCTACATTCAAGGTTAGGAAGGAAAAGTTAGGGGACAGAATTACTGCCCTTCATCAACTCGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTATTAGAATCTATTGGTTATATCAGATTCCTTCAGAGCCAAATTGAGGCACTTAGCTTACCATACTTGGGAAATGGATCAGGAAACATGAAGAAGCAACAACAACAATATGTTCAAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAAAACTGTTTGAAGAGAAAGGCAGTTAGTGAACAGGTCTGTGAAGAAAAAGAAAAGAAAGACCTGAGGAGCAGAGGATTGTGTTTGGTTCCAGTGTCATGCACAATGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCTCCTGCTTTTGGTGGGGGATTTCAGTAG

Protein sequence

>MsG0480023835.01.T01

MNRGVYLQSSPVQQMMAGNPNNWWNTMRPPAPDHHHQPNFFSTTTPNSNFQTPYSHASSLPLPSWNENQDQLPESWSHLLMSGVVYEEEKASMLSQPPSNASVVDHVKQESSVNNYVYGNEEFHGTPNSTWSQIVSVPSSSSKSCATSFTSSSMLDFSNTKTDIRSPPSDLSSDQCNSSSAGGALKKARVQSSTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLESIGYIRFLQSQIEALSLPYLGNGSGNMKKQQQQYVQGEKNCLFPEDPGQLLNENCLKRKAVSEQVCEEKEKKDLRSRGLCLVPVSCTMQVGSDNGADYWAPAFGGGFQ*