Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022953.01.T01 | XP_013446556.1 | 97.423 | 388 | 10 | 0 | 1 | 388 | 1 | 388 | 0 | 784 |
| MsG0480022953.01.T02 | XP_013446556.1 | 97.423 | 388 | 10 | 0 | 1 | 388 | 1 | 388 | 0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022953.01.T01 | Q9CAG8 | 59.58 | 381 | 141 | 2 | 8 | 388 | 9 | 376 | 1.18E-164 | 469 |
| MsG0480022953.01.T02 | Q9CAG8 | 59.58 | 381 | 141 | 2 | 8 | 388 | 9 | 376 | 1.18E-164 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022953.01.T02 | A0A072TUQ4 | 97.423 | 388 | 10 | 0 | 1 | 388 | 1 | 388 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005272.01 | MsG0480022953.01 | 0.813000 | 3.194491e-51 | 2.061447e-48 |
| MsG0180005836.01 | MsG0480022953.01 | 0.810716 | 1.003649e-50 | 6.095151e-48 |
| MsG0480022953.01 | MsG0480023529.01 | 0.820254 | 7.558480e-53 | 5.950235e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022953.01.T01 | MTR_8g080370 | 97.423 | 388 | 10 | 0 | 1 | 388 | 1 | 388 | 0.0 | 784 |
| MsG0480022953.01.T01 | MTR_3g085570 | 76.267 | 375 | 84 | 2 | 16 | 388 | 1 | 372 | 0.0 | 594 |
| MsG0480022953.01.T01 | MTR_4g114110 | 30.746 | 335 | 207 | 12 | 26 | 346 | 55 | 378 | 5.43e-35 | 134 |
| MsG0480022953.01.T01 | MTR_8g085600 | 30.325 | 277 | 179 | 7 | 50 | 320 | 76 | 344 | 2.76e-31 | 124 |
| MsG0480022953.01.T01 | MTR_8g030940 | 29.900 | 301 | 184 | 11 | 36 | 322 | 9 | 296 | 2.26e-29 | 117 |
| MsG0480022953.01.T01 | MTR_2g019230 | 30.124 | 322 | 195 | 11 | 16 | 325 | 31 | 334 | 1.55e-27 | 112 |
| MsG0480022953.01.T01 | MTR_4g108280 | 23.404 | 329 | 223 | 7 | 37 | 346 | 17 | 335 | 1.58e-22 | 98.2 |
| MsG0480022953.01.T01 | MTR_7g095220 | 30.876 | 217 | 135 | 5 | 49 | 254 | 2 | 214 | 4.15e-22 | 96.7 |
| MsG0480022953.01.T01 | MTR_2g094093 | 25.556 | 360 | 237 | 10 | 37 | 379 | 3 | 348 | 4.52e-22 | 96.7 |
| MsG0480022953.01.T01 | MTR_2g008440 | 24.383 | 324 | 203 | 8 | 29 | 323 | 21 | 331 | 1.62e-21 | 96.3 |
| MsG0480022953.01.T01 | MTR_0345s0010 | 24.847 | 326 | 208 | 8 | 43 | 346 | 80 | 390 | 6.31e-21 | 94.4 |
| MsG0480022953.01.T01 | MTR_0105s0130 | 24.847 | 326 | 208 | 8 | 43 | 346 | 80 | 390 | 6.81e-21 | 94.4 |
| MsG0480022953.01.T01 | MTR_1330s0010 | 24.847 | 326 | 208 | 8 | 43 | 346 | 93 | 403 | 8.12e-21 | 94.0 |
| MsG0480022953.01.T01 | MTR_0105s0170 | 24.847 | 326 | 208 | 8 | 43 | 346 | 93 | 403 | 1.18e-20 | 93.6 |
| MsG0480022953.01.T01 | MTR_0496s0010 | 24.451 | 364 | 237 | 10 | 43 | 386 | 63 | 408 | 2.20e-20 | 92.4 |
| MsG0480022953.01.T01 | MTR_0105s0040 | 24.847 | 326 | 208 | 8 | 43 | 346 | 178 | 488 | 2.43e-20 | 93.2 |
| MsG0480022953.01.T01 | MTR_0105s0020 | 24.159 | 327 | 209 | 8 | 43 | 346 | 80 | 390 | 4.34e-20 | 91.7 |
| MsG0480022953.01.T01 | MTR_4g022260 | 23.529 | 323 | 214 | 7 | 43 | 346 | 63 | 371 | 1.05e-19 | 90.5 |
| MsG0480022953.01.T01 | MTR_4g022400 | 22.741 | 321 | 221 | 7 | 42 | 346 | 59 | 368 | 1.20e-18 | 87.4 |
| MsG0480022953.01.T01 | MTR_5g039390 | 26.033 | 242 | 160 | 5 | 47 | 283 | 125 | 352 | 3.61e-16 | 80.1 |
| MsG0480022953.01.T01 | MTR_8g468030 | 26.923 | 234 | 146 | 6 | 58 | 283 | 157 | 373 | 5.30e-16 | 79.7 |
| MsG0480022953.01.T01 | MTR_6g023805 | 23.913 | 322 | 202 | 12 | 52 | 346 | 57 | 362 | 3.04e-14 | 73.9 |
| MsG0480022953.01.T01 | MTR_2g012790 | 37.113 | 97 | 59 | 1 | 162 | 256 | 102 | 198 | 3.07e-14 | 73.9 |
| MsG0480022953.01.T01 | MTR_3g094850 | 26.389 | 216 | 148 | 5 | 46 | 257 | 4 | 212 | 7.25e-13 | 69.7 |
| MsG0480022953.01.T01 | MTR_8g085650 | 22.979 | 235 | 163 | 3 | 45 | 263 | 1 | 233 | 1.04e-12 | 68.9 |
| MsG0480022953.01.T01 | MTR_7g070320 | 29.310 | 174 | 116 | 5 | 130 | 301 | 458 | 626 | 2.14e-12 | 68.9 |
| MsG0480022953.01.T01 | MTR_7g070320 | 30.872 | 149 | 94 | 5 | 131 | 278 | 508 | 648 | 6.22e-12 | 67.8 |
| MsG0480022953.01.T02 | MTR_8g080370 | 97.423 | 388 | 10 | 0 | 1 | 388 | 1 | 388 | 0.0 | 784 |
| MsG0480022953.01.T02 | MTR_3g085570 | 76.267 | 375 | 84 | 2 | 16 | 388 | 1 | 372 | 0.0 | 594 |
| MsG0480022953.01.T02 | MTR_4g114110 | 30.746 | 335 | 207 | 12 | 26 | 346 | 55 | 378 | 5.43e-35 | 134 |
| MsG0480022953.01.T02 | MTR_8g085600 | 30.325 | 277 | 179 | 7 | 50 | 320 | 76 | 344 | 2.76e-31 | 124 |
| MsG0480022953.01.T02 | MTR_8g030940 | 29.900 | 301 | 184 | 11 | 36 | 322 | 9 | 296 | 2.26e-29 | 117 |
| MsG0480022953.01.T02 | MTR_2g019230 | 30.124 | 322 | 195 | 11 | 16 | 325 | 31 | 334 | 1.55e-27 | 112 |
| MsG0480022953.01.T02 | MTR_4g108280 | 23.404 | 329 | 223 | 7 | 37 | 346 | 17 | 335 | 1.58e-22 | 98.2 |
| MsG0480022953.01.T02 | MTR_7g095220 | 30.876 | 217 | 135 | 5 | 49 | 254 | 2 | 214 | 4.15e-22 | 96.7 |
| MsG0480022953.01.T02 | MTR_2g094093 | 25.556 | 360 | 237 | 10 | 37 | 379 | 3 | 348 | 4.52e-22 | 96.7 |
| MsG0480022953.01.T02 | MTR_2g008440 | 24.383 | 324 | 203 | 8 | 29 | 323 | 21 | 331 | 1.62e-21 | 96.3 |
| MsG0480022953.01.T02 | MTR_0345s0010 | 24.847 | 326 | 208 | 8 | 43 | 346 | 80 | 390 | 6.31e-21 | 94.4 |
| MsG0480022953.01.T02 | MTR_0105s0130 | 24.847 | 326 | 208 | 8 | 43 | 346 | 80 | 390 | 6.81e-21 | 94.4 |
| MsG0480022953.01.T02 | MTR_1330s0010 | 24.847 | 326 | 208 | 8 | 43 | 346 | 93 | 403 | 8.12e-21 | 94.0 |
| MsG0480022953.01.T02 | MTR_0105s0170 | 24.847 | 326 | 208 | 8 | 43 | 346 | 93 | 403 | 1.18e-20 | 93.6 |
| MsG0480022953.01.T02 | MTR_0496s0010 | 24.451 | 364 | 237 | 10 | 43 | 386 | 63 | 408 | 2.20e-20 | 92.4 |
| MsG0480022953.01.T02 | MTR_0105s0040 | 24.847 | 326 | 208 | 8 | 43 | 346 | 178 | 488 | 2.43e-20 | 93.2 |
| MsG0480022953.01.T02 | MTR_0105s0020 | 24.159 | 327 | 209 | 8 | 43 | 346 | 80 | 390 | 4.34e-20 | 91.7 |
| MsG0480022953.01.T02 | MTR_4g022260 | 23.529 | 323 | 214 | 7 | 43 | 346 | 63 | 371 | 1.05e-19 | 90.5 |
| MsG0480022953.01.T02 | MTR_4g022400 | 22.741 | 321 | 221 | 7 | 42 | 346 | 59 | 368 | 1.20e-18 | 87.4 |
| MsG0480022953.01.T02 | MTR_5g039390 | 26.033 | 242 | 160 | 5 | 47 | 283 | 125 | 352 | 3.61e-16 | 80.1 |
| MsG0480022953.01.T02 | MTR_8g468030 | 26.923 | 234 | 146 | 6 | 58 | 283 | 157 | 373 | 5.30e-16 | 79.7 |
| MsG0480022953.01.T02 | MTR_6g023805 | 23.913 | 322 | 202 | 12 | 52 | 346 | 57 | 362 | 3.04e-14 | 73.9 |
| MsG0480022953.01.T02 | MTR_2g012790 | 37.113 | 97 | 59 | 1 | 162 | 256 | 102 | 198 | 3.07e-14 | 73.9 |
| MsG0480022953.01.T02 | MTR_3g094850 | 26.389 | 216 | 148 | 5 | 46 | 257 | 4 | 212 | 7.25e-13 | 69.7 |
| MsG0480022953.01.T02 | MTR_8g085650 | 22.979 | 235 | 163 | 3 | 45 | 263 | 1 | 233 | 1.04e-12 | 68.9 |
| MsG0480022953.01.T02 | MTR_7g070320 | 29.310 | 174 | 116 | 5 | 130 | 301 | 458 | 626 | 2.14e-12 | 68.9 |
| MsG0480022953.01.T02 | MTR_7g070320 | 30.872 | 149 | 94 | 5 | 131 | 278 | 508 | 648 | 6.22e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022953.01.T01 | AT1G67480 | 59.580 | 381 | 141 | 2 | 8 | 388 | 9 | 376 | 1.20e-165 | 469 |
| MsG0480022953.01.T01 | AT1G67480 | 59.580 | 381 | 141 | 2 | 8 | 388 | 9 | 376 | 1.20e-165 | 469 |
| MsG0480022953.01.T01 | AT1G67480 | 59.580 | 381 | 141 | 2 | 8 | 388 | 9 | 376 | 1.20e-165 | 469 |
| MsG0480022953.01.T01 | AT1G27420 | 40.678 | 354 | 187 | 8 | 44 | 386 | 3 | 344 | 2.69e-86 | 266 |
| MsG0480022953.01.T01 | AT1G55270 | 31.541 | 279 | 171 | 9 | 50 | 319 | 77 | 344 | 3.40e-34 | 132 |
| MsG0480022953.01.T01 | AT1G30090 | 28.421 | 285 | 191 | 7 | 50 | 325 | 52 | 332 | 1.02e-24 | 104 |
| MsG0480022953.01.T01 | AT5G60570 | 25.826 | 333 | 213 | 9 | 33 | 352 | 38 | 349 | 2.34e-24 | 103 |
| MsG0480022953.01.T01 | AT5G60570 | 25.826 | 333 | 213 | 9 | 33 | 352 | 38 | 349 | 2.34e-24 | 103 |
| MsG0480022953.01.T01 | AT5G60570 | 25.826 | 333 | 213 | 9 | 33 | 352 | 38 | 349 | 2.34e-24 | 103 |
| MsG0480022953.01.T01 | AT2G24540 | 25.000 | 312 | 213 | 7 | 21 | 322 | 1 | 301 | 2.05e-23 | 100 |
| MsG0480022953.01.T01 | AT3G61350 | 27.076 | 277 | 182 | 9 | 51 | 319 | 21 | 285 | 2.78e-23 | 100 |
| MsG0480022953.01.T01 | AT3G61350 | 27.076 | 277 | 182 | 9 | 51 | 319 | 21 | 285 | 2.78e-23 | 100 |
| MsG0480022953.01.T01 | AT1G16250 | 26.230 | 244 | 164 | 6 | 51 | 283 | 8 | 246 | 2.52e-22 | 97.8 |
| MsG0480022953.01.T01 | AT1G16250 | 26.230 | 244 | 164 | 6 | 51 | 283 | 8 | 246 | 2.52e-22 | 97.8 |
| MsG0480022953.01.T01 | AT1G55270 | 29.075 | 227 | 141 | 9 | 102 | 319 | 3 | 218 | 9.40e-20 | 89.4 |
| MsG0480022953.01.T01 | AT3G63220 | 30.876 | 217 | 135 | 5 | 49 | 254 | 2 | 214 | 2.35e-19 | 89.0 |
| MsG0480022953.01.T01 | AT3G63220 | 30.876 | 217 | 135 | 5 | 49 | 254 | 9 | 221 | 2.46e-19 | 89.0 |
| MsG0480022953.01.T01 | AT3G63220 | 30.876 | 217 | 135 | 5 | 49 | 254 | 9 | 221 | 2.46e-19 | 89.0 |
| MsG0480022953.01.T01 | AT3G27150 | 25.610 | 328 | 203 | 11 | 64 | 366 | 83 | 394 | 8.98e-19 | 87.8 |
| MsG0480022953.01.T01 | AT3G27150 | 25.610 | 328 | 203 | 11 | 64 | 366 | 83 | 394 | 8.98e-19 | 87.8 |
| MsG0480022953.01.T01 | AT1G22040 | 25.916 | 382 | 193 | 14 | 51 | 354 | 43 | 412 | 1.47e-18 | 87.4 |
| MsG0480022953.01.T01 | AT2G21950 | 26.780 | 295 | 185 | 11 | 42 | 320 | 9 | 288 | 7.23e-18 | 84.7 |
| MsG0480022953.01.T01 | AT1G26930 | 28.251 | 223 | 144 | 4 | 38 | 256 | 57 | 267 | 1.01e-17 | 84.7 |
| MsG0480022953.01.T01 | AT1G74510 | 27.632 | 228 | 144 | 5 | 62 | 283 | 106 | 318 | 2.19e-17 | 84.0 |
| MsG0480022953.01.T01 | AT1G74510 | 27.632 | 228 | 144 | 5 | 62 | 283 | 106 | 318 | 2.19e-17 | 84.0 |
| MsG0480022953.01.T01 | AT1G74510 | 27.632 | 228 | 144 | 5 | 62 | 283 | 106 | 318 | 2.19e-17 | 84.0 |
| MsG0480022953.01.T01 | AT1G26930 | 28.986 | 207 | 129 | 5 | 38 | 239 | 57 | 250 | 7.64e-17 | 81.6 |
| MsG0480022953.01.T01 | AT5G26960 | 27.675 | 271 | 157 | 10 | 47 | 293 | 39 | 294 | 2.13e-16 | 80.9 |
| MsG0480022953.01.T01 | AT5G01660 | 28.990 | 307 | 171 | 16 | 56 | 335 | 362 | 648 | 2.16e-16 | 81.3 |
| MsG0480022953.01.T01 | AT5G01660 | 28.990 | 307 | 171 | 16 | 56 | 335 | 362 | 648 | 2.16e-16 | 81.3 |
| MsG0480022953.01.T01 | AT2G44130 | 24.907 | 269 | 164 | 6 | 51 | 283 | 19 | 285 | 2.94e-16 | 80.1 |
| MsG0480022953.01.T01 | AT4G03030 | 30.317 | 221 | 129 | 7 | 45 | 242 | 32 | 250 | 4.70e-16 | 79.7 |
| MsG0480022953.01.T01 | AT1G80440 | 27.160 | 243 | 160 | 6 | 51 | 278 | 3 | 243 | 1.21e-15 | 78.2 |
| MsG0480022953.01.T01 | AT1G14330 | 23.529 | 221 | 159 | 3 | 37 | 256 | 80 | 291 | 3.29e-14 | 74.3 |
| MsG0480022953.01.T01 | AT2G02870 | 23.651 | 241 | 168 | 4 | 47 | 283 | 113 | 341 | 4.33e-14 | 73.9 |
| MsG0480022953.01.T01 | AT2G02870 | 23.651 | 241 | 168 | 4 | 47 | 283 | 113 | 341 | 4.33e-14 | 73.9 |
| MsG0480022953.01.T01 | AT2G02870 | 23.651 | 241 | 168 | 4 | 47 | 283 | 113 | 341 | 4.33e-14 | 73.9 |
| MsG0480022953.01.T01 | AT3G46050 | 28.022 | 182 | 120 | 5 | 52 | 229 | 18 | 192 | 2.74e-13 | 70.9 |
| MsG0480022953.01.T01 | AT5G40680 | 22.951 | 305 | 195 | 12 | 53 | 334 | 64 | 351 | 3.36e-13 | 70.9 |
| MsG0480022953.01.T01 | AT1G15670 | 25.911 | 247 | 162 | 7 | 51 | 278 | 3 | 247 | 3.03e-11 | 64.7 |
| MsG0480022953.01.T02 | AT1G67480 | 59.580 | 381 | 141 | 2 | 8 | 388 | 9 | 376 | 1.20e-165 | 469 |
| MsG0480022953.01.T02 | AT1G67480 | 59.580 | 381 | 141 | 2 | 8 | 388 | 9 | 376 | 1.20e-165 | 469 |
| MsG0480022953.01.T02 | AT1G67480 | 59.580 | 381 | 141 | 2 | 8 | 388 | 9 | 376 | 1.20e-165 | 469 |
| MsG0480022953.01.T02 | AT1G27420 | 40.678 | 354 | 187 | 8 | 44 | 386 | 3 | 344 | 2.69e-86 | 266 |
| MsG0480022953.01.T02 | AT1G55270 | 31.541 | 279 | 171 | 9 | 50 | 319 | 77 | 344 | 3.40e-34 | 132 |
| MsG0480022953.01.T02 | AT1G30090 | 28.421 | 285 | 191 | 7 | 50 | 325 | 52 | 332 | 1.02e-24 | 104 |
| MsG0480022953.01.T02 | AT5G60570 | 25.826 | 333 | 213 | 9 | 33 | 352 | 38 | 349 | 2.34e-24 | 103 |
| MsG0480022953.01.T02 | AT5G60570 | 25.826 | 333 | 213 | 9 | 33 | 352 | 38 | 349 | 2.34e-24 | 103 |
| MsG0480022953.01.T02 | AT5G60570 | 25.826 | 333 | 213 | 9 | 33 | 352 | 38 | 349 | 2.34e-24 | 103 |
| MsG0480022953.01.T02 | AT2G24540 | 25.000 | 312 | 213 | 7 | 21 | 322 | 1 | 301 | 2.05e-23 | 100 |
| MsG0480022953.01.T02 | AT3G61350 | 27.076 | 277 | 182 | 9 | 51 | 319 | 21 | 285 | 2.78e-23 | 100 |
| MsG0480022953.01.T02 | AT3G61350 | 27.076 | 277 | 182 | 9 | 51 | 319 | 21 | 285 | 2.78e-23 | 100 |
| MsG0480022953.01.T02 | AT1G16250 | 26.230 | 244 | 164 | 6 | 51 | 283 | 8 | 246 | 2.52e-22 | 97.8 |
| MsG0480022953.01.T02 | AT1G16250 | 26.230 | 244 | 164 | 6 | 51 | 283 | 8 | 246 | 2.52e-22 | 97.8 |
| MsG0480022953.01.T02 | AT1G55270 | 29.075 | 227 | 141 | 9 | 102 | 319 | 3 | 218 | 9.40e-20 | 89.4 |
| MsG0480022953.01.T02 | AT3G63220 | 30.876 | 217 | 135 | 5 | 49 | 254 | 2 | 214 | 2.35e-19 | 89.0 |
| MsG0480022953.01.T02 | AT3G63220 | 30.876 | 217 | 135 | 5 | 49 | 254 | 9 | 221 | 2.46e-19 | 89.0 |
| MsG0480022953.01.T02 | AT3G63220 | 30.876 | 217 | 135 | 5 | 49 | 254 | 9 | 221 | 2.46e-19 | 89.0 |
| MsG0480022953.01.T02 | AT3G27150 | 25.610 | 328 | 203 | 11 | 64 | 366 | 83 | 394 | 8.98e-19 | 87.8 |
| MsG0480022953.01.T02 | AT3G27150 | 25.610 | 328 | 203 | 11 | 64 | 366 | 83 | 394 | 8.98e-19 | 87.8 |
| MsG0480022953.01.T02 | AT1G22040 | 25.916 | 382 | 193 | 14 | 51 | 354 | 43 | 412 | 1.47e-18 | 87.4 |
| MsG0480022953.01.T02 | AT2G21950 | 26.780 | 295 | 185 | 11 | 42 | 320 | 9 | 288 | 7.23e-18 | 84.7 |
| MsG0480022953.01.T02 | AT1G26930 | 28.251 | 223 | 144 | 4 | 38 | 256 | 57 | 267 | 1.01e-17 | 84.7 |
| MsG0480022953.01.T02 | AT1G74510 | 27.632 | 228 | 144 | 5 | 62 | 283 | 106 | 318 | 2.19e-17 | 84.0 |
| MsG0480022953.01.T02 | AT1G74510 | 27.632 | 228 | 144 | 5 | 62 | 283 | 106 | 318 | 2.19e-17 | 84.0 |
| MsG0480022953.01.T02 | AT1G74510 | 27.632 | 228 | 144 | 5 | 62 | 283 | 106 | 318 | 2.19e-17 | 84.0 |
| MsG0480022953.01.T02 | AT1G26930 | 28.986 | 207 | 129 | 5 | 38 | 239 | 57 | 250 | 7.64e-17 | 81.6 |
| MsG0480022953.01.T02 | AT5G26960 | 27.675 | 271 | 157 | 10 | 47 | 293 | 39 | 294 | 2.13e-16 | 80.9 |
| MsG0480022953.01.T02 | AT5G01660 | 28.990 | 307 | 171 | 16 | 56 | 335 | 362 | 648 | 2.16e-16 | 81.3 |
| MsG0480022953.01.T02 | AT5G01660 | 28.990 | 307 | 171 | 16 | 56 | 335 | 362 | 648 | 2.16e-16 | 81.3 |
| MsG0480022953.01.T02 | AT2G44130 | 24.907 | 269 | 164 | 6 | 51 | 283 | 19 | 285 | 2.94e-16 | 80.1 |
| MsG0480022953.01.T02 | AT4G03030 | 30.317 | 221 | 129 | 7 | 45 | 242 | 32 | 250 | 4.70e-16 | 79.7 |
| MsG0480022953.01.T02 | AT1G80440 | 27.160 | 243 | 160 | 6 | 51 | 278 | 3 | 243 | 1.21e-15 | 78.2 |
| MsG0480022953.01.T02 | AT1G14330 | 23.529 | 221 | 159 | 3 | 37 | 256 | 80 | 291 | 3.29e-14 | 74.3 |
| MsG0480022953.01.T02 | AT2G02870 | 23.651 | 241 | 168 | 4 | 47 | 283 | 113 | 341 | 4.33e-14 | 73.9 |
| MsG0480022953.01.T02 | AT2G02870 | 23.651 | 241 | 168 | 4 | 47 | 283 | 113 | 341 | 4.33e-14 | 73.9 |
| MsG0480022953.01.T02 | AT2G02870 | 23.651 | 241 | 168 | 4 | 47 | 283 | 113 | 341 | 4.33e-14 | 73.9 |
| MsG0480022953.01.T02 | AT3G46050 | 28.022 | 182 | 120 | 5 | 52 | 229 | 18 | 192 | 2.74e-13 | 70.9 |
| MsG0480022953.01.T02 | AT5G40680 | 22.951 | 305 | 195 | 12 | 53 | 334 | 64 | 351 | 3.36e-13 | 70.9 |
| MsG0480022953.01.T02 | AT1G15670 | 25.911 | 247 | 162 | 7 | 51 | 278 | 3 | 247 | 3.03e-11 | 64.7 |
Find 85 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATAGCCCTATTCTTTC+TGG | 0.085042 | 4:-78991133 | MsG0480022953.01.T01:CDS |
| GATTGATTGTGTGTAATTTC+TGG | 0.201268 | 4:-78991301 | MsG0480022953.01.T01:five_prime_UTR |
| GGTCCAAGGAAGGCTGGGTT+TGG | 0.218814 | 4:-78990863 | MsG0480022953.01.T01:CDS |
| TTAGATTATGATATTGTTTA+CGG | 0.244192 | 4:-78991887 | MsG0480022953.01.T01:intron |
| GGCTGAATAAATCAACTAAT+TGG | 0.251357 | 4:+78991466 | None:intergenic |
| AGGAAGTCATTGGGAGGTTA+TGG | 0.260241 | 4:-78990927 | MsG0480022953.01.T01:CDS |
| GTCCAAGGAAGGCTGGGTTT+GGG | 0.265699 | 4:-78990862 | MsG0480022953.01.T01:CDS |
| CTTCTCTTGATTCACCATAT+TGG | 0.268458 | 4:+78991216 | None:intergenic |
| AAACAATATCATAATCTAAA+AGG | 0.287913 | 4:+78991891 | None:intergenic |
| GAAGGCTGGGTTTGGGGTTG+TGG | 0.291666 | 4:-78990855 | MsG0480022953.01.T01:CDS |
| TAACGGAAAGCTTCTTGTTA+TGG | 0.323843 | 4:-78990828 | MsG0480022953.01.T01:CDS |
| TGTCGAGGTTGGAATTATAT+TGG | 0.350026 | 4:+78990756 | None:intergenic |
| AGCACATAAATATATTCAAT+TGG | 0.351012 | 4:+78991754 | None:intergenic |
| GAGGTTATCTGAAAAGCTTA+TGG | 0.353926 | 4:-78991685 | MsG0480022953.01.T01:intron |
| GCATTGTTTGGTTGATTGAT+TGG | 0.363200 | 4:-78991350 | MsG0480022953.01.T01:five_prime_UTR |
| GAATATATTTATGTGCTGTT+TGG | 0.377607 | 4:-78991748 | MsG0480022953.01.T01:intron |
| ATGATAGCCCTATTCTTTCT+GGG | 0.386607 | 4:-78991132 | MsG0480022953.01.T01:CDS |
| TGGGAGGTTATGGATTCATT+TGG | 0.394308 | 4:-78990917 | MsG0480022953.01.T01:CDS |
| GTGAAGGAAAAGGAAGTCAT+TGG | 0.394801 | 4:-78990937 | MsG0480022953.01.T01:CDS |
| ACCCCAAACCCAGCCTTCCT+TGG | 0.402488 | 4:+78990860 | None:intergenic |
| ACTGATCATGGATACATCAT+TGG | 0.404162 | 4:+78991840 | None:intergenic |
| GCCTTCCTTGGACCAGGCAT+TGG | 0.406760 | 4:+78990872 | None:intergenic |
| AATAAGCAAGAAATAAATAA+AGG | 0.408453 | 4:+78992092 | None:intergenic |
| ATAAGAAATATATAAATGTT+AGG | 0.416915 | 4:+78992013 | None:intergenic |
| TCGTTCTAACTTCCTAGCTA+TGG | 0.419133 | 4:-78991068 | MsG0480022953.01.T01:CDS |
| TTTGGGGTTGTGGTTCTTAA+CGG | 0.421717 | 4:-78990845 | MsG0480022953.01.T01:CDS |
| AAGCTTATGGAAATAGATTA+CGG | 0.426994 | 4:-78991672 | MsG0480022953.01.T01:intron |
| ACTCTCTTCAAGTTTCATAT+CGG | 0.436144 | 4:+78991445 | None:intergenic |
| ATGCCTGGTCCAAGGAAGGC+TGG | 0.443856 | 4:-78990869 | MsG0480022953.01.T01:CDS |
| CAATGCTTTGAAACATCATC+AGG | 0.446862 | 4:+78991106 | None:intergenic |
| TCCAAGGAAGGCTGGGTTTG+GGG | 0.450800 | 4:-78990861 | MsG0480022953.01.T01:CDS |
| CAGGGAGCCCAGAAAGAATA+GGG | 0.456054 | 4:+78991125 | None:intergenic |
| TCAGGGAGCCCAGAAAGAAT+AGG | 0.456310 | 4:+78991124 | None:intergenic |
| TTCCTTGGACCAGGCATTGG+TGG | 0.456385 | 4:+78990875 | None:intergenic |
| CATGTTCAAATGACCTATAC+TGG | 0.462281 | 4:-78991396 | MsG0480022953.01.T01:five_prime_UTR |
| CGATCTCTTCCACCAATGCC+TGG | 0.465067 | 4:-78990884 | MsG0480022953.01.T01:CDS |
| ATAAACATTTATCATATAAG+TGG | 0.467994 | 4:+78991552 | None:intergenic |
| GCACATAAATATATTCAATT+GGG | 0.474265 | 4:+78991755 | None:intergenic |
| ATAACCGTGCGAAAGTTGGC+TGG | 0.478182 | 4:-78990998 | MsG0480022953.01.T01:CDS |
| GAGATCATAAATGTTTATGA+TGG | 0.491141 | 4:-78991947 | MsG0480022953.01.T01:intron |
| AGTTACAGTTGGCCGAGGCT+TGG | 0.491656 | 4:-78991419 | MsG0480022953.01.T01:five_prime_UTR |
| CGTTCTAACTTCCTAGCTAT+GGG | 0.493297 | 4:-78991067 | MsG0480022953.01.T01:CDS |
| GGAAAGCTTCTTGTTATGGC+TGG | 0.494684 | 4:-78990824 | MsG0480022953.01.T01:CDS |
| CTGATCATGGATACATCATT+GGG | 0.499398 | 4:+78991841 | None:intergenic |
| AACCCAGCCTTCCTTGGACC+AGG | 0.506388 | 4:+78990866 | None:intergenic |
| GTTATATATTTCTATAACAA+AGG | 0.508050 | 4:+78991574 | None:intergenic |
| ACAGCTGATAGTGAAGGAAA+AGG | 0.509911 | 4:-78990947 | MsG0480022953.01.T01:CDS |
| AATATAATTCCAACCTCGAC+AGG | 0.511389 | 4:-78990754 | MsG0480022953.01.T01:intron |
| ATTCATAACCGTGCGAAAGT+TGG | 0.517003 | 4:-78991002 | MsG0480022953.01.T01:CDS |
| TGAAGGAAAAGGAAGTCATT+GGG | 0.524940 | 4:-78990936 | MsG0480022953.01.T01:CDS |
| AATGAATATGAATAAATGAA+TGG | 0.526429 | 4:+78992298 | None:intergenic |
| TGGCTGGGCTGCTTGAGGAG+TGG | 0.526642 | 4:-78990982 | MsG0480022953.01.T01:CDS |
| TTCTTGACAGCCACAAAACC+AGG | 0.528566 | 4:+78991268 | None:intergenic |
| TGCCTGGTCCAAGGAAGGCT+GGG | 0.535078 | 4:-78990868 | MsG0480022953.01.T01:CDS |
| AACTGTTTCTGTTTCAGCAG+AGG | 0.545805 | 4:-78990783 | MsG0480022953.01.T01:CDS |
| TGGGCGGTGTTTGTAAGAGA+TGG | 0.546805 | 4:-78991048 | MsG0480022953.01.T01:CDS |
| GAAATGCTTTATTCAAAGCA+AGG | 0.547489 | 4:-78991026 | MsG0480022953.01.T01:CDS |
| GCTGGCTATTCATCAACTGA+TGG | 0.551443 | 4:-78990806 | MsG0480022953.01.T01:CDS |
| CAGGCATTGGTGGAAGAGAT+CGG | 0.553729 | 4:+78990885 | None:intergenic |
| AAATATATAAATGTTAGGCC+TGG | 0.557367 | 4:+78992018 | None:intergenic |
| TACAAACACCGCCCATAGCT+AGG | 0.562469 | 4:+78991056 | None:intergenic |
| GTGAAAGTTACAGTTGGCCG+AGG | 0.564811 | 4:-78991424 | MsG0480022953.01.T01:five_prime_UTR |
| TAGAACGAGGCACGAGTGCA+AGG | 0.565540 | 4:+78991083 | None:intergenic |
| TTCCACCAATGCCTGGTCCA+AGG | 0.568289 | 4:-78990877 | MsG0480022953.01.T01:CDS |
| ACCAATGCCTGGTCCAAGGA+AGG | 0.569574 | 4:-78990873 | MsG0480022953.01.T01:CDS |
| TGACCACCTTTCAAAAGAGA+TGG | 0.572189 | 4:+78991193 | None:intergenic |
| CATTTGAACATGCCAAGCCT+CGG | 0.574937 | 4:+78991407 | None:intergenic |
| ACAAACATACCTGTCGAGGT+TGG | 0.576689 | 4:+78990745 | None:intergenic |
| GGAACTTACAAGAAAAGAAG+AGG | 0.579666 | 4:+78992262 | None:intergenic |
| TGTTGAGTATCAACCAGTAT+AGG | 0.588393 | 4:+78991383 | None:intergenic |
| TAACCGTGCGAAAGTTGGCT+GGG | 0.589238 | 4:-78990997 | MsG0480022953.01.T01:CDS |
| AAAGTTGGCTGGGCTGCTTG+AGG | 0.599240 | 4:-78990987 | MsG0480022953.01.T01:CDS |
| ATCTTAACAGCTGATAGTGA+AGG | 0.613279 | 4:-78990953 | MsG0480022953.01.T01:CDS |
| AAGAGAGTGAAAGTTACAGT+TGG | 0.615991 | 4:-78991430 | MsG0480022953.01.T01:five_prime_UTR |
| TCGTTGAACTTAATTCAACC+AGG | 0.621113 | 4:-78992036 | MsG0480022953.01.T01:intron |
| TGAAAGGTGGTCATAGTGTG+AGG | 0.621543 | 4:-78991183 | MsG0480022953.01.T01:CDS |
| CAGCCCAGCCAACTTTCGCA+CGG | 0.624024 | 4:+78990994 | None:intergenic |
| TAATACAAACATACCTGTCG+AGG | 0.630233 | 4:+78990741 | None:intergenic |
| TGAAAATAAACTTAACACGA+GGG | 0.643434 | 4:+78991644 | None:intergenic |
| TGGTCATAGTGTGAGGTCTG+AGG | 0.676031 | 4:-78991176 | MsG0480022953.01.T01:CDS |
| ATGAAAATAAACTTAACACG+AGG | 0.678200 | 4:+78991643 | None:intergenic |
| AATGCTTTGAAACATCATCA+GGG | 0.680105 | 4:+78991107 | None:intergenic |
| TCTAACTTCCTAGCTATGGG+CGG | 0.680814 | 4:-78991064 | MsG0480022953.01.T01:CDS |
| AGGAAAAGGAAGTCATTGGG+AGG | 0.693227 | 4:-78990933 | MsG0480022953.01.T01:CDS |
| ATAGCTAGGAAGTTAGAACG+AGG | 0.777780 | 4:+78991070 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGAAATATATAAATGTT+AGG | + | Chr4:78990031-78990050 | None:intergenic | 10.0% |
| !! | AAACAATATCATAATCTAAA+AGG | + | Chr4:78990153-78990172 | None:intergenic | 15.0% |
| !! | AATAAGCAAGAAATAAATAA+AGG | + | Chr4:78989952-78989971 | None:intergenic | 15.0% |
| !! | AATGAATATGAATAAATGAA+TGG | + | Chr4:78989746-78989765 | None:intergenic | 15.0% |
| !! | ATAAACATTTATCATATAAG+TGG | + | Chr4:78990492-78990511 | None:intergenic | 15.0% |
| !! | TTAGATTATGATATTGTTTA+CGG | - | Chr4:78990154-78990173 | MsG0480022953.01.T01:CDS | 15.0% |
| !!! | GTTATATATTTCTATAACAA+AGG | + | Chr4:78990470-78990489 | None:intergenic | 15.0% |
| !!! | TTATTTTCATAAGTTCTTTT+TGG | - | Chr4:78990411-78990430 | MsG0480022953.01.T01:CDS | 15.0% |
| !! | AGCACATAAATATATTCAAT+TGG | + | Chr4:78990290-78990309 | None:intergenic | 20.0% |
| !! | ATTTGAATAAAAACAAGAGA+AGG | + | Chr4:78989871-78989890 | None:intergenic | 20.0% |
| !! | GCACATAAATATATTCAATT+GGG | + | Chr4:78990289-78990308 | None:intergenic | 20.0% |
| !! | TTAAAAATAAATGAATCTGC+AGG | + | Chr4:78990252-78990271 | None:intergenic | 20.0% |
| !!! | TATTTTGAATGAAGACTATA+AGG | + | Chr4:78989917-78989936 | None:intergenic | 20.0% |
| ! | AAATATATAAATGTTAGGCC+TGG | + | Chr4:78990026-78990045 | None:intergenic | 25.0% |
| ! | AAGCTTATGGAAATAGATTA+CGG | - | Chr4:78990369-78990388 | MsG0480022953.01.T01:CDS | 25.0% |
| ! | AGAAAAGAAATTGTTCTGTA+TGG | - | Chr4:78991758-78991777 | MsG0480022953.01.T01:intron | 25.0% |
| ! | AGATGATAATTCATGGAAAA+CGG | - | Chr4:78991818-78991837 | MsG0480022953.01.T01:intron | 25.0% |
| ! | ATGAAAATAAACTTAACACG+AGG | + | Chr4:78990401-78990420 | None:intergenic | 25.0% |
| ! | GAGATCATAAATGTTTATGA+TGG | - | Chr4:78990094-78990113 | MsG0480022953.01.T01:CDS | 25.0% |
| ! | TCAACTAATTGGAGAAAAAA+AGG | + | Chr4:78990567-78990586 | None:intergenic | 25.0% |
| ! | TGAAAATAAACTTAACACGA+GGG | + | Chr4:78990400-78990419 | None:intergenic | 25.0% |
| ! | TTTGTAATTGATATTGCAGT+TGG | - | Chr4:78991397-78991416 | MsG0480022953.01.T01:five_prime_UTR | 25.0% |
| !! | AAATGTGTGTTTTTCCAATA+TGG | - | Chr4:78990811-78990830 | MsG0480022953.01.T01:CDS | 25.0% |
| !! | AGTTTTCATGATAACATCAA+TGG | + | Chr4:78989978-78989997 | None:intergenic | 25.0% |
| !! | GAATATATTTATGTGCTGTT+TGG | - | Chr4:78990293-78990312 | MsG0480022953.01.T01:CDS | 25.0% |
| AAAAAACACATCACTGATCA+TGG | + | Chr4:78990216-78990235 | None:intergenic | 30.0% | |
| AAGTATGATTGTAGTGTACA+GGG | - | Chr4:78992114-78992133 | MsG0480022953.01.T01:intron | 30.0% | |
| ACTACTGATATAAAACCATC+TGG | - | Chr4:78991987-78992006 | MsG0480022953.01.T01:intron | 30.0% | |
| AGAAATTGTTCTGTATGGAA+TGG | - | Chr4:78991763-78991782 | MsG0480022953.01.T01:intron | 30.0% | |
| AGAAGAAGAAGAAGAAGAAA+AGG | + | Chr4:78989806-78989825 | None:intergenic | 30.0% | |
| CTCATATGCATATAATTCCA+GGG | + | Chr4:78992292-78992311 | None:intergenic | 30.0% | |
| GATTGATTGTGTGTAATTTC+TGG | - | Chr4:78990740-78990759 | MsG0480022953.01.T01:intron | 30.0% | |
| GGCTGAATAAATCAACTAAT+TGG | + | Chr4:78990578-78990597 | None:intergenic | 30.0% | |
| TAAGTATGATTGTAGTGTAC+AGG | - | Chr4:78992113-78992132 | MsG0480022953.01.T01:intron | 30.0% | |
| TACAACAAAGTCCTATATGT+AGG | + | Chr4:78991933-78991952 | None:intergenic | 30.0% | |
| TCAATCCAGATGATAATTCA+TGG | - | Chr4:78991811-78991830 | MsG0480022953.01.T01:intron | 30.0% | |
| TCTCATATGCATATAATTCC+AGG | + | Chr4:78992293-78992312 | None:intergenic | 30.0% | |
| TGGAATTATATGCATATGAG+AGG | - | Chr4:78992292-78992311 | MsG0480022953.01.T01:five_prime_UTR | 30.0% | |
| ! | ACTCTCTTCAAGTTTCATAT+CGG | + | Chr4:78990599-78990618 | None:intergenic | 30.0% |
| ! | GAAATGCTTTATTCAAAGCA+AGG | - | Chr4:78991015-78991034 | MsG0480022953.01.T01:CDS | 30.0% |
| ! | GTTTTCCATGAATTATCATC+TGG | + | Chr4:78991819-78991838 | None:intergenic | 30.0% |
| ! | TTTAGATTTGGGATACTGAA+TGG | - | Chr4:78991876-78991895 | MsG0480022953.01.T01:intron | 30.0% |
| !! | AATGCTTTGAAACATCATCA+GGG | + | Chr4:78990937-78990956 | None:intergenic | 30.0% |
| !! | ATTTCTGGTTTAAAAATGCC+TGG | - | Chr4:78990755-78990774 | MsG0480022953.01.T01:CDS | 30.0% |
| !!! | ATGATCAGTGATGTGTTTTT+TGG | - | Chr4:78990215-78990234 | MsG0480022953.01.T01:CDS | 30.0% |
| !!! | TTTAAAAATGCCTGGTTTTG+TGG | - | Chr4:78990763-78990782 | MsG0480022953.01.T01:CDS | 30.0% |
| AAGAGAGTGAAAGTTACAGT+TGG | - | Chr4:78990611-78990630 | MsG0480022953.01.T01:CDS | 35.0% | |
| AATATAATTCCAACCTCGAC+AGG | - | Chr4:78991287-78991306 | MsG0480022953.01.T01:exon | 35.0% | |
| ACTGATCATGGATACATCAT+TGG | + | Chr4:78990204-78990223 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAAAGG+AGG | + | Chr4:78989803-78989822 | None:intergenic | 35.0% | |
| AGTTGGATGGAGATGAAAAA+TGG | - | Chr4:78991705-78991724 | MsG0480022953.01.T01:intron | 35.0% | |
| ATGATAGCCCTATTCTTTCT+GGG | - | Chr4:78990909-78990928 | MsG0480022953.01.T01:CDS | 35.0% | |
| CAGATTGTCAAACATGAATG+TGG | - | Chr4:78991422-78991441 | MsG0480022953.01.T01:five_prime_UTR | 35.0% | |
| CATGTTCAAATGACCTATAC+TGG | - | Chr4:78990645-78990664 | MsG0480022953.01.T01:intron | 35.0% | |
| CTGATCATGGATACATCATT+GGG | + | Chr4:78990203-78990222 | None:intergenic | 35.0% | |
| CTTCTCTTGATTCACCATAT+TGG | + | Chr4:78990828-78990847 | None:intergenic | 35.0% | |
| GAGGTTATCTGAAAAGCTTA+TGG | - | Chr4:78990356-78990375 | MsG0480022953.01.T01:CDS | 35.0% | |
| GATGAAAAATGGGTGTGTTA+TGG | - | Chr4:78991716-78991735 | MsG0480022953.01.T01:intron | 35.0% | |
| GCATTGTTTGGTTGATTGAT+TGG | - | Chr4:78990691-78990710 | MsG0480022953.01.T01:intron | 35.0% | |
| GGAACTTACAAGAAAAGAAG+AGG | + | Chr4:78989782-78989801 | None:intergenic | 35.0% | |
| GTATGGAATGGAAGAATCAA+CGG | - | Chr4:78991775-78991794 | MsG0480022953.01.T01:intron | 35.0% | |
| GTTGGATGGAGATGAAAAAT+GGG | - | Chr4:78991706-78991725 | MsG0480022953.01.T01:intron | 35.0% | |
| TAACGGAAAGCTTCTTGTTA+TGG | - | Chr4:78991213-78991232 | MsG0480022953.01.T01:CDS | 35.0% | |
| TAATACAAACATACCTGTCG+AGG | + | Chr4:78991303-78991322 | None:intergenic | 35.0% | |
| TAATGTTGCAGCCAAAATTG+TGG | + | Chr4:78992159-78992178 | None:intergenic | 35.0% | |
| TACCAATGCTGAAAGACATA+AGG | + | Chr4:78991368-78991387 | None:intergenic | 35.0% | |
| TCGTTGAACTTAATTCAACC+AGG | - | Chr4:78990005-78990024 | MsG0480022953.01.T01:intron | 35.0% | |
| TGAAGGAAAAGGAAGTCATT+GGG | - | Chr4:78991105-78991124 | MsG0480022953.01.T01:CDS | 35.0% | |
| TGAAGGAAGATCCTACATAT+AGG | - | Chr4:78991919-78991938 | MsG0480022953.01.T01:intron | 35.0% | |
| TGTCGAGGTTGGAATTATAT+TGG | + | Chr4:78991288-78991307 | None:intergenic | 35.0% | |
| TGTTGAGTATCAACCAGTAT+AGG | + | Chr4:78990661-78990680 | None:intergenic | 35.0% | |
| ! | AAACTTTGCGTCCACAATTT+TGG | - | Chr4:78992145-78992164 | MsG0480022953.01.T01:intron | 35.0% |
| ! | ATCTTAACAGCTGATAGTGA+AGG | - | Chr4:78991088-78991107 | MsG0480022953.01.T01:CDS | 35.0% |
| ! | CAAGACATTTTCGCATTGTT+TGG | - | Chr4:78990679-78990698 | MsG0480022953.01.T01:intron | 35.0% |
| ! | TACATGCATAAGCACTTTTG+AGG | - | Chr4:78990337-78990356 | MsG0480022953.01.T01:CDS | 35.0% |
| !! | CAATGCTTTGAAACATCATC+AGG | + | Chr4:78990938-78990957 | None:intergenic | 35.0% |
| !!! | CGAGTGTTGGTTTTAGATTT+GGG | - | Chr4:78991865-78991884 | MsG0480022953.01.T01:intron | 35.0% |
| !!! | TCGAGTGTTGGTTTTAGATT+TGG | - | Chr4:78991864-78991883 | MsG0480022953.01.T01:intron | 35.0% |
| ACTGAAGACCTTGATAGAGT+TGG | - | Chr4:78992063-78992082 | MsG0480022953.01.T01:intron | 40.0% | |
| AGTATCCGGATCATAAACCT+CGG | + | Chr4:78991535-78991554 | None:intergenic | 40.0% | |
| ATAGCTAGGAAGTTAGAACG+AGG | + | Chr4:78990974-78990993 | None:intergenic | 40.0% | |
| ATTCATAACCGTGCGAAAGT+TGG | - | Chr4:78991039-78991058 | MsG0480022953.01.T01:CDS | 40.0% | |
| CGTTCTAACTTCCTAGCTAT+GGG | - | Chr4:78990974-78990993 | MsG0480022953.01.T01:CDS | 40.0% | |
| CTTGTGCAGTGTAACTATCA+AGG | - | Chr4:78992016-78992035 | MsG0480022953.01.T01:intron | 40.0% | |
| GATGATAGCCCTATTCTTTC+TGG | - | Chr4:78990908-78990927 | MsG0480022953.01.T01:CDS | 40.0% | |
| GTAACTATCAAGGCCTGAAA+GGG | - | Chr4:78992026-78992045 | MsG0480022953.01.T01:intron | 40.0% | |
| GTCCTTATGTCTTTCAGCAT+TGG | - | Chr4:78991363-78991382 | MsG0480022953.01.T01:five_prime_UTR | 40.0% | |
| GTGAAGGAAAAGGAAGTCAT+TGG | - | Chr4:78991104-78991123 | MsG0480022953.01.T01:CDS | 40.0% | |
| GTTTATGCTGTTGGAGGATA+TGG | - | Chr4:78991483-78991502 | MsG0480022953.01.T01:intron | 40.0% | |
| TAGAGTTGGCAATGGAGTTA+CGG | - | Chr4:78992077-78992096 | MsG0480022953.01.T01:intron | 40.0% | |
| TCGTTCTAACTTCCTAGCTA+TGG | - | Chr4:78990973-78990992 | MsG0480022953.01.T01:CDS | 40.0% | |
| TGACCACCTTTCAAAAGAGA+TGG | + | Chr4:78990851-78990870 | None:intergenic | 40.0% | |
| TGGGAGGTTATGGATTCATT+TGG | - | Chr4:78991124-78991143 | MsG0480022953.01.T01:CDS | 40.0% | |
| TGTAACTATCAAGGCCTGAA+AGG | - | Chr4:78992025-78992044 | MsG0480022953.01.T01:intron | 40.0% | |
| TGTCAAACATGAATGTGGCT+CGG | - | Chr4:78991427-78991446 | MsG0480022953.01.T01:five_prime_UTR | 40.0% | |
| TTTGCTTGTGCAGAAGTCAA+TGG | - | Chr4:78991456-78991475 | MsG0480022953.01.T01:five_prime_UTR | 40.0% | |
| ! | ACAGCTGATAGTGAAGGAAA+AGG | - | Chr4:78991094-78991113 | MsG0480022953.01.T01:CDS | 40.0% |
| ! | GAGAAGCCATCTCTTTTGAA+AGG | - | Chr4:78990842-78990861 | MsG0480022953.01.T01:CDS | 40.0% |
| ! | TTTGGGGTTGTGGTTCTTAA+CGG | - | Chr4:78991196-78991215 | MsG0480022953.01.T01:CDS | 40.0% |
| !! | AACTGTTTCTGTTTCAGCAG+AGG | - | Chr4:78991258-78991277 | MsG0480022953.01.T01:CDS | 40.0% |
| !! | AAGCCATCTCTTTTGAAAGG+TGG | - | Chr4:78990845-78990864 | MsG0480022953.01.T01:CDS | 40.0% |
| !! | AATGATGACTGTTGTTTCCC+TGG | - | Chr4:78992272-78992291 | MsG0480022953.01.T01:five_prime_UTR | 40.0% |
| !! | AATGGCTTGGTTTATGCTGT+TGG | - | Chr4:78991474-78991493 | MsG0480022953.01.T01:intron | 40.0% |
| !!! | GCTTTTGCTGTTTTCACTGA+AGG | - | Chr4:78991902-78991921 | MsG0480022953.01.T01:intron | 40.0% |
| ACAAACATACCTGTCGAGGT+TGG | + | Chr4:78991299-78991318 | None:intergenic | 45.0% | |
| ACTGTCCACTTGTCAGTATC+CGG | + | Chr4:78991549-78991568 | None:intergenic | 45.0% | |
| AGGAAAAGGAAGTCATTGGG+AGG | - | Chr4:78991108-78991127 | MsG0480022953.01.T01:CDS | 45.0% | |
| AGGAAGTCATTGGGAGGTTA+TGG | - | Chr4:78991114-78991133 | MsG0480022953.01.T01:CDS | 45.0% | |
| ATGATCCGGATACTGACAAG+TGG | - | Chr4:78991541-78991560 | MsG0480022953.01.T01:intron | 45.0% | |
| CAGATGCAGTAAACCCTTTC+AGG | + | Chr4:78992042-78992061 | None:intergenic | 45.0% | |
| CATTTGAACATGCCAAGCCT+CGG | + | Chr4:78990637-78990656 | None:intergenic | 45.0% | |
| CCATCCAACTATGCTTCTCA+GGG | + | Chr4:78991695-78991714 | None:intergenic | 45.0% | |
| CTCCATTGCCAACTCTATCA+AGG | + | Chr4:78992074-78992093 | None:intergenic | 45.0% | |
| GACCTTGATAGAGTTGGCAA+TGG | - | Chr4:78992069-78992088 | MsG0480022953.01.T01:intron | 45.0% | |
| GCTGGCTATTCATCAACTGA+TGG | - | Chr4:78991235-78991254 | MsG0480022953.01.T01:CDS | 45.0% | |
| GTATGATCCAAATGCAGAGC+CGG | - | Chr4:78991950-78991969 | MsG0480022953.01.T01:intron | 45.0% | |
| TATGATCCAAATGCAGAGCC+GGG | - | Chr4:78991951-78991970 | MsG0480022953.01.T01:intron | 45.0% | |
| TCCATCCAACTATGCTTCTC+AGG | + | Chr4:78991696-78991715 | None:intergenic | 45.0% | |
| TCTAACTTCCTAGCTATGGG+CGG | - | Chr4:78990977-78990996 | MsG0480022953.01.T01:CDS | 45.0% | |
| TGAAAGGTGGTCATAGTGTG+AGG | - | Chr4:78990858-78990877 | MsG0480022953.01.T01:CDS | 45.0% | |
| TTCTTGACAGCCACAAAACC+AGG | + | Chr4:78990776-78990795 | None:intergenic | 45.0% | |
| TTGTGCAGAAGTCAATGGCT+TGG | - | Chr4:78991461-78991480 | MsG0480022953.01.T01:five_prime_UTR | 45.0% | |
| ! | ACAACCCTGAGAAGCATAGT+TGG | - | Chr4:78991688-78991707 | MsG0480022953.01.T01:intron | 45.0% |
| ! | GGAAAGCTTCTTGTTATGGC+TGG | - | Chr4:78991217-78991236 | MsG0480022953.01.T01:CDS | 45.0% |
| !! | ATGCTTTGCCTGTGGATTAG+AGG | - | Chr4:78991599-78991618 | MsG0480022953.01.T01:intron | 45.0% |
| !! | TGCTTTGCCTGTGGATTAGA+GGG | - | Chr4:78991600-78991619 | MsG0480022953.01.T01:intron | 45.0% |
| AGAGGGCAAGCTCTATGTGA+TGG | - | Chr4:78991617-78991636 | MsG0480022953.01.T01:intron | 50.0% | |
| ATAACCGTGCGAAAGTTGGC+TGG | - | Chr4:78991043-78991062 | MsG0480022953.01.T01:CDS | 50.0% | |
| ATGATCCAAATGCAGAGCCG+GGG | - | Chr4:78991952-78991971 | MsG0480022953.01.T01:intron | 50.0% | |
| CAGGGAGCCCAGAAAGAATA+GGG | + | Chr4:78990919-78990938 | None:intergenic | 50.0% | |
| CTGCACAAGCACAAACCAGA+TGG | + | Chr4:78992005-78992024 | None:intergenic | 50.0% | |
| GAGGGCAAGCTCTATGTGAT+GGG | - | Chr4:78991618-78991637 | MsG0480022953.01.T01:intron | 50.0% | |
| GGAAGGTCGAGCTTCACAAT+TGG | - | Chr4:78991642-78991661 | MsG0480022953.01.T01:intron | 50.0% | |
| GTGAAAGTTACAGTTGGCCG+AGG | - | Chr4:78990617-78990636 | MsG0480022953.01.T01:CDS | 50.0% | |
| GTTGGAGGATATGGAGCAGA+AGG | - | Chr4:78991492-78991511 | MsG0480022953.01.T01:intron | 50.0% | |
| TAACCGTGCGAAAGTTGGCT+GGG | - | Chr4:78991044-78991063 | MsG0480022953.01.T01:CDS | 50.0% | |
| TACAAACACCGCCCATAGCT+AGG | + | Chr4:78990988-78991007 | None:intergenic | 50.0% | |
| TCAGGGAGCCCAGAAAGAAT+AGG | + | Chr4:78990920-78990939 | None:intergenic | 50.0% | |
| TGGGCGGTGTTTGTAAGAGA+TGG | - | Chr4:78990993-78991012 | MsG0480022953.01.T01:CDS | 50.0% | |
| TGGTCATAGTGTGAGGTCTG+AGG | - | Chr4:78990865-78990884 | MsG0480022953.01.T01:CDS | 50.0% | |
| ! | CCCTGAGAAGCATAGTTGGA+TGG | - | Chr4:78991692-78991711 | MsG0480022953.01.T01:intron | 50.0% |
| ! | GGCTTGGTTTATGCTGTTGG+AGG | - | Chr4:78991477-78991496 | MsG0480022953.01.T01:intron | 50.0% |
| !! | AGCTCTATGTGATGGGTGGA+AGG | - | Chr4:78991625-78991644 | MsG0480022953.01.T01:intron | 50.0% |
| !! | CAGGCATTGGTGGAAGAGAT+CGG | + | Chr4:78991159-78991178 | None:intergenic | 50.0% |
| AAAGTTGGCTGGGCTGCTTG+AGG | - | Chr4:78991054-78991073 | MsG0480022953.01.T01:CDS | 55.0% | |
| AACACTCGAACTCCCCGTCA+GGG | + | Chr4:78991853-78991872 | None:intergenic | 55.0% | |
| AACGGTACCAGTACCCCTGA+CGG | - | Chr4:78991836-78991855 | MsG0480022953.01.T01:intron | 55.0% | |
| ACCAATGCCTGGTCCAAGGA+AGG | - | Chr4:78991168-78991187 | MsG0480022953.01.T01:CDS | 55.0% | |
| AGAGCCTACGTCGTCCAAGA+TGG | - | Chr4:78991574-78991593 | MsG0480022953.01.T01:intron | 55.0% | |
| AGATGGGGATGCTTTGCCTG+TGG | - | Chr4:78991591-78991610 | MsG0480022953.01.T01:intron | 55.0% | |
| AGCCTACGTCGTCCAAGATG+GGG | - | Chr4:78991576-78991595 | MsG0480022953.01.T01:intron | 55.0% | |
| AGTTACAGTTGGCCGAGGCT+TGG | - | Chr4:78990622-78990641 | MsG0480022953.01.T01:CDS | 55.0% | |
| ATCCCCATCTTGGACGACGT+AGG | + | Chr4:78991581-78991600 | None:intergenic | 55.0% | |
| CGATCTCTTCCACCAATGCC+TGG | - | Chr4:78991157-78991176 | MsG0480022953.01.T01:CDS | 55.0% | |
| GAGCCTACGTCGTCCAAGAT+GGG | - | Chr4:78991575-78991594 | MsG0480022953.01.T01:intron | 55.0% | |
| GAGCTTGCCCTCTAATCCAC+AGG | + | Chr4:78991610-78991629 | None:intergenic | 55.0% | |
| GTCCAAGGAAGGCTGGGTTT+GGG | - | Chr4:78991179-78991198 | MsG0480022953.01.T01:CDS | 55.0% | |
| TAGAACGAGGCACGAGTGCA+AGG | + | Chr4:78990961-78990980 | None:intergenic | 55.0% | |
| TCCAAGGAAGGCTGGGTTTG+GGG | - | Chr4:78991180-78991199 | MsG0480022953.01.T01:CDS | 55.0% | |
| TTCCACCAATGCCTGGTCCA+AGG | - | Chr4:78991164-78991183 | MsG0480022953.01.T01:CDS | 55.0% | |
| ! | CAGCGCCGAGGTTTATGATC+CGG | - | Chr4:78991527-78991546 | MsG0480022953.01.T01:intron | 55.0% |
| ! | CAGGCAAAGCATCCCCATCT+TGG | + | Chr4:78991591-78991610 | None:intergenic | 55.0% |
| ! | GGCAAGCTCTATGTGATGGG+TGG | - | Chr4:78991621-78991640 | MsG0480022953.01.T01:intron | 55.0% |
| !! | TTCCTTGGACCAGGCATTGG+TGG | + | Chr4:78991169-78991188 | None:intergenic | 55.0% |
| AACCCAGCCTTCCTTGGACC+AGG | + | Chr4:78991178-78991197 | None:intergenic | 60.0% | |
| ACACTCGAACTCCCCGTCAG+GGG | + | Chr4:78991852-78991871 | None:intergenic | 60.0% | |
| ACCCCAAACCCAGCCTTCCT+TGG | + | Chr4:78991184-78991203 | None:intergenic | 60.0% | |
| ACGGTACCAGTACCCCTGAC+GGG | - | Chr4:78991837-78991856 | MsG0480022953.01.T01:intron | 60.0% | |
| ATGCCTGGTCCAAGGAAGGC+TGG | - | Chr4:78991172-78991191 | MsG0480022953.01.T01:CDS | 60.0% | |
| CAACACTCGAACTCCCCGTC+AGG | + | Chr4:78991854-78991873 | None:intergenic | 60.0% | |
| CAGCCCAGCCAACTTTCGCA+CGG | + | Chr4:78991050-78991069 | None:intergenic | 60.0% | |
| CGGATCATAAACCTCGGCGC+TGG | + | Chr4:78991529-78991548 | None:intergenic | 60.0% | |
| CTGACGGGGAGTTCGAGTGT+TGG | - | Chr4:78991852-78991871 | MsG0480022953.01.T01:intron | 60.0% | |
| GCCTTCCTTGGACCAGGCAT+TGG | + | Chr4:78991172-78991191 | None:intergenic | 60.0% | |
| GGTCCAAGGAAGGCTGGGTT+TGG | - | Chr4:78991178-78991197 | MsG0480022953.01.T01:CDS | 60.0% | |
| GTAGTTCCCCACTCACACCC+CGG | + | Chr4:78991972-78991991 | None:intergenic | 60.0% | |
| TCACACCCCGGCTCTGCATT+TGG | + | Chr4:78991960-78991979 | None:intergenic | 60.0% | |
| TGCCTGGTCCAAGGAAGGCT+GGG | - | Chr4:78991173-78991192 | MsG0480022953.01.T01:CDS | 60.0% | |
| ! | GAAGGCTGGGTTTGGGGTTG+TGG | - | Chr4:78991186-78991205 | MsG0480022953.01.T01:CDS | 60.0% |
| ATGCAGAGCCGGGGTGTGAG+TGG | - | Chr4:78991961-78991980 | MsG0480022953.01.T01:intron | 65.0% | |
| CGGTACCAGTACCCCTGACG+GGG | - | Chr4:78991838-78991857 | MsG0480022953.01.T01:intron | 65.0% | |
| TGACAGTCTCTCCAGCGCCG+AGG | - | Chr4:78991515-78991534 | MsG0480022953.01.T01:intron | 65.0% | |
| TGCAGAGCCGGGGTGTGAGT+GGG | - | Chr4:78991962-78991981 | MsG0480022953.01.T01:intron | 65.0% | |
| TGGCTGGGCTGCTTGAGGAG+TGG | - | Chr4:78991059-78991078 | MsG0480022953.01.T01:CDS | 65.0% | |
| ! | GAACTCCCCGTCAGGGGTAC+TGG | + | Chr4:78991846-78991865 | None:intergenic | 65.0% |
| GCAGAGCCGGGGTGTGAGTG+GGG | - | Chr4:78991963-78991982 | MsG0480022953.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 78989742 | 78992321 | 78989742 | ID=MsG0480022953.01;Name=MsG0480022953.01 |
| Chr4 | mRNA | 78989742 | 78992321 | 78989742 | ID=MsG0480022953.01.T01;Parent=MsG0480022953.01;Name=MsG0480022953.01.T01;_AED=0.48;_eAED=0.48;_QI=238|1|1|1|0.5|0.33|3|278|388 |
| Chr4 | exon | 78990755 | 78991480 | 78990755 | ID=MsG0480022953.01.T01:exon:23571;Parent=MsG0480022953.01.T01 |
| Chr4 | exon | 78992271 | 78992321 | 78992271 | ID=MsG0480022953.01.T01:exon:23570;Parent=MsG0480022953.01.T01 |
| Chr4 | five_prime_UTR | 78992271 | 78992321 | 78992271 | ID=MsG0480022953.01.T01:five_prime_utr;Parent=MsG0480022953.01.T01 |
| Chr4 | five_prime_UTR | 78991294 | 78991480 | 78991294 | ID=MsG0480022953.01.T01:five_prime_utr;Parent=MsG0480022953.01.T01 |
| Chr4 | CDS | 78990755 | 78991293 | 78990755 | ID=MsG0480022953.01.T01:cds;Parent=MsG0480022953.01.T01 |
| Chr4 | CDS | 78990020 | 78990647 | 78990020 | ID=MsG0480022953.01.T01:cds;Parent=MsG0480022953.01.T01 |
| Chr4 | three_prime_UTR | 78989742 | 78990019 | 78989742 | ID=MsG0480022953.01.T01:three_prime_utr;Parent=MsG0480022953.01.T01 |
| Chr4 | mRNA | 78989742 | 78992318 | 78989742 | ID=MsG0480022953.01.T02;Parent=MsG0480022953.01;Name=MsG0480022953.01.T02;_AED=0.47;_eAED=0.47;_QI=1025|1|1|1|1|1|2|278|388 |
| Chr4 | exon | 78990755 | 78992318 | 78990755 | ID=MsG0480022953.01.T02:exon:23573;Parent=MsG0480022953.01.T02 |
| Chr4 | five_prime_UTR | 78991294 | 78992318 | 78991294 | ID=MsG0480022953.01.T02:five_prime_utr;Parent=MsG0480022953.01.T02 |
| Chr4 | CDS | 78990755 | 78991293 | 78990755 | ID=MsG0480022953.01.T02:cds;Parent=MsG0480022953.01.T02 |
| Chr4 | CDS | 78990020 | 78990647 | 78990020 | ID=MsG0480022953.01.T02:cds;Parent=MsG0480022953.01.T02 |
| Chr4 | three_prime_UTR | 78989742 | 78990019 | 78989742 | ID=MsG0480022953.01.T02:three_prime_utr;Parent=MsG0480022953.01.T02 |
| Gene Sequence |
| Protein sequence |
