AlfalfaGEDB | MsG0480023529.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023529.01

KEGG: -
GO: GO:0055114
PFAM: PF08240

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023529.01.T01	AET04881.1	93.893	131	5	2	1	131	1	128	5.45E-81	251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023529.01.T01	A4YGN0	49.275	69	35	0	57	125	1	69	2.77E-14	71.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023529.01.T01	G7LFT7	93.893	131	5	2	1	131	1	128	2.60e-81	251

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005272.01	MsG0480023529.01	0.820607	6.273799e-53	4.987028e-50
MsG0280011165.01	MsG0480023529.01	0.803925	2.762830e-49	1.405954e-46
MsG0280011203.01	MsG0480023529.01	0.800582	1.347349e-48	6.296609e-46
MsG0480022953.01	MsG0480023529.01	0.820254	7.558480e-53	5.950235e-50
MsG0480023267.01	MsG0480023529.01	0.801574	8.442823e-49	4.045874e-46
MsG0480023528.01	MsG0480023529.01	0.889376	2.561286e-73	2.061216e-69
MsG0480023529.01	MsG0780039969.01	0.835650	1.483054e-56	1.825057e-53
MsG0480023529.01	MsG0780040173.01	0.833881	4.132499e-56	4.823056e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023529.01.T01	MTR_8g095220	93.893	131	5	2	1	131	1	128	6.60e-85	251
MsG0480023529.01.T01	MTR_8g095220	93.893	131	5	2	1	131	1	128	2.80e-84	253
MsG0480023529.01.T01	MTR_7g099040	41.558	77	43	2	58	132	13	89	8.97e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023529.01.T01	AT5G63620	58.209	134	47	3	1	131	3	130	2.88e-45	150
MsG0480023529.01.T01	AT5G63620	58.209	134	47	3	1	131	3	130	9.55e-45	151
MsG0480023529.01.T01	AT5G63620	58.209	134	47	3	1	131	3	130	1.11e-44	150

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Find 32 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAACACAAGGACTTGAAAA+CGG	0.537012	4:+86486031	None:intergenic
ACAGAAGCTGTTGGTGGTGT+TGG	0.457231	4:-86486426	MsG0480023529.01.T01:CDS
ACAGCACCACGCATGTAAGA+TGG	0.560649	4:+86486399	None:intergenic
ACCAACAGCTTCTGTGTGAA+TGG	0.454170	4:+86486434	None:intergenic
ACTGGTGAAGTTGTTGAACA+TGG	0.627651	4:-86485995	MsG0480023529.01.T01:CDS
ACTTTAACCTTTCTATGGTT+TGG	0.309846	4:+86485958	None:intergenic
AGGAATATGAAATTCTTCAA+TGG	0.521033	4:+86486350	None:intergenic
AGTTCACCAGCTTTGGGACG+AGG	0.494387	4:+86486330	None:intergenic
ATCTCATGGCCCACAACACA+AGG	0.562994	4:+86486019	None:intergenic
ATGAGAAGTTCACCAGCTTT+GGG	0.377738	4:+86486324	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTATATTGCAGCTTAATTG+TGG	-	Chr4:86486447-86486466	MsG0480023529.01.T01:CDS	30.0%
TTTCAGTTTCATTGGAAGAT+CGG	-	Chr4:86486037-86486056	MsG0480023529.01.T01:CDS	30.0%
ACAACACAAGGACTTGAAAA+CGG	+	Chr4:86486617-86486636	None:intergenic	35.0%
AGAGAGATAAACAATACCCT+TGG	+	Chr4:86486352-86486371	None:intergenic	35.0%
GAACTTCTCATCAAAACCAA+GGG	-	Chr4:86486333-86486352	MsG0480023529.01.T01:CDS	35.0%
GTCTAAGTGAGATTGAGAAA+TGG	-	Chr4:86486068-86486087	MsG0480023529.01.T01:CDS	35.0%
TCAGCAACAACTTCTTGAAA+AGG	-	Chr4:86486118-86486137	MsG0480023529.01.T01:intron	35.0%
TCTGATCTTCATGTCATGAA+AGG	-	Chr4:86486584-86486603	MsG0480023529.01.T01:five_prime_UTR	35.0%
TCTTGAAAAGGTTGTCTTGT+TGG	-	Chr4:86486130-86486149	MsG0480023529.01.T01:intron	35.0%
TGAAATTCTTCAATGGTGAG+AGG	+	Chr4:86486291-86486310	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	86485970	86486697	86485970	ID=MsG0480023529.01;Name=MsG0480023529.01
Chr4	mRNA	86485970	86486697	86485970	ID=MsG0480023529.01.T01;Parent=MsG0480023529.01;Name=MsG0480023529.01.T01;_AED=0.24;_eAED=0.24;_QI=117\|1\|1\|1\|0.14\|0.25\|8\|0\|132
Chr4	exon	86485970	86486100	86485970	ID=MsG0480023529.01.T01:exon:3096;Parent=MsG0480023529.01.T01
Chr4	exon	86486313	86486697	86486313	ID=MsG0480023529.01.T01:exon:3095;Parent=MsG0480023529.01.T01
Chr4	five_prime_UTR	86486581	86486697	86486581	ID=MsG0480023529.01.T01:five_prime_utr;Parent=MsG0480023529.01.T01
Chr4	CDS	86486313	86486580	86486313	ID=MsG0480023529.01.T01:cds;Parent=MsG0480023529.01.T01
Chr4	CDS	86485970	86486100	86485970	ID=MsG0480023529.01.T01:cds;Parent=MsG0480023529.01.T01

Gene Sequence

>MsG0480023529.01.T01

ATGGCATCTGCACTAGTTCGTAGGAACATCATCAGCAACAACTTCTTGAAAAGGTTGTCTTGTTGGCGTTTGAATAATAACAAACAGTTGTTGAATAATGTTGAAGCTGATGCATGTACGGTTTCCATTCACACAGAAGCTGTTGGTGGTGTTGGATTGCCATCTTACATGCGTGGTGCTGTTTTTCGGGAACCCAACAAACCTCTCACCATTGAAGAATTTCATATTCCTCGTCCCAAAGCTGGTGAACTTCTCATCAAAACCAAGGGATGTGGAGTATGCCACTCTGATCTTCATGTCATGAAAGGTGAAATTCCGTTTTCAAGTCCTTGTGTTGTGGGCCATGAGATTACTGGTGAAGTTGTTGAACATGGACAACACACTGATTCCAAACCATAG

Protein sequence

>MsG0480023529.01.T01

MASALVRRNIISNNFLKRLSCWRLNNNKQLLNNVEADACTVSIHTEAVGGVGLPSYMRGAVFREPNKPLTIEEFHIPRPKAGELLIKTKGCGVCHSDLHVMKGEIPFSSPCVVGHEITGEVVEHGQHTDSKP*