AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023042.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023042.01.T01 MTR_8g085600 69.421 242 37 5 1 223 1 224 1.49e-106 315
MsG0480023042.01.T01 MTR_4g114110 55.610 205 88 2 22 223 24 228 7.35e-70 221
MsG0480023042.01.T01 MTR_3g083730 65.909 44 15 0 56 99 6 49 2.91e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023042.01.T01 AT1G55270 63.594 217 78 1 8 223 9 225 2.82e-90 274
MsG0480023042.01.T01 AT1G55270 91.935 62 5 0 162 223 38 99 3.74e-36 130

Find 145 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTCTTGTTTCACTTAA+TGG 0.104977 4:-80090460 MsG0480023042.01.T01:three_prime_UTR
GGTCTTTAGTTAGGAATTTA+TGG 0.197065 4:-80090321 MsG0480023042.01.T01:three_prime_UTR
ATTAGTTACGATATATATTT+AGG 0.205098 4:-80090046 MsG0480023042.01.T01:three_prime_UTR
GTAAATGTTGTTTCGCTCTA+AGG 0.225400 4:-80090083 MsG0480023042.01.T01:three_prime_UTR
GCGGGAGGGATTGCCATATT+TGG 0.244284 4:+80091087 None:intergenic
CAATCCCTCCCGCCTGTTCC+TGG 0.260304 4:-80091077 MsG0480023042.01.T01:CDS
AAAATTGTGTGATTCTTTCT+TGG 0.269397 4:+80094650 None:intergenic
CCTTCAAAGTTGGTTGTTGT+TGG 0.270029 4:-80094819 None:intergenic
TTGACCCTATCTACCAAATA+TGG 0.280582 4:-80091100 MsG0480023042.01.T01:CDS
TTTATTGGTGTTATTCATAA+TGG 0.293556 4:-80090741 MsG0480023042.01.T01:three_prime_UTR
TTATTTATATTTCAGTTAGT+AGG 0.303650 4:-80089945 MsG0480023042.01.T01:three_prime_UTR
AAATTGTGTGATTCTTTCTT+GGG 0.308090 4:+80094651 None:intergenic
ACAACGCACGTACAAATAAA+TGG 0.313254 4:-80090946 MsG0480023042.01.T01:CDS
TATTCTGAAGCATTGGGATT+TGG 0.319911 4:-80091052 MsG0480023042.01.T01:CDS
TGTGCATTCGGGTTTATATC+AGG 0.324598 4:+80091379 None:intergenic
TGACGTTTCCGCAGCATATC+AGG 0.328469 4:+80090914 None:intergenic
TTATGAATAACACCAATAAA+AGG 0.331081 4:+80090744 None:intergenic
ATCGATAGCAGGCTTCATTT+AGG 0.332950 4:-80090505 MsG0480023042.01.T01:three_prime_UTR
AGCTCCATCTGTTCCGATTA+GGG 0.347050 4:+80090796 None:intergenic
AAGCTCCATCTGTTCCGATT+AGG 0.349975 4:+80090795 None:intergenic
GATTGCCATATTTGGTAGAT+AGG 0.357958 4:+80091095 None:intergenic
GTTATCACAGTTGTATCTTT+AGG 0.368537 4:-80089973 MsG0480023042.01.T01:three_prime_UTR
TCAAAGCAAATTAAGCATCT+TGG 0.375309 4:+80094411 None:intergenic
TGCTATTGTAAAGTAGATTC+AGG 0.375567 4:-80091460 MsG0480023042.01.T01:CDS
TAAACTCAAAGTCTATGATA+TGG 0.375642 4:-80090550 MsG0480023042.01.T01:three_prime_UTR
TCACCTCTGGGAAATATTGC+TGG 0.388886 4:-80090358 MsG0480023042.01.T01:three_prime_UTR
TATTTATATTTCAGTTAGTA+GGG 0.403692 4:-80089944 MsG0480023042.01.T01:three_prime_UTR
GGTTGCCACTTGTACTTGTT+TGG 0.403994 4:-80091013 MsG0480023042.01.T01:CDS
CTTCAAAGTTGGTTGTTGTT+GGG 0.407347 4:-80094818 None:intergenic
ATGATATGGCGACGGATTCA+TGG 0.409397 4:-80090536 MsG0480023042.01.T01:three_prime_UTR
TACACAGATAAGGAAATTGA+TGG 0.410222 4:-80090199 MsG0480023042.01.T01:three_prime_UTR
AATCCAAGTATCTCACTTAA+CGG 0.412505 4:-80090606 MsG0480023042.01.T01:three_prime_UTR
CTGGAATATTCTGAAGCATT+GGG 0.414363 4:-80091058 MsG0480023042.01.T01:CDS
TTTCAAAGGCTAGATTCAAA+AGG 0.418963 4:-80094451 MsG0480023042.01.T01:five_prime_UTR
CCAATGCTTCAGAATATTCC+AGG 0.421641 4:+80091059 None:intergenic
CTGAGGTTTACGACCCTAAT+CGG 0.421824 4:-80090809 MsG0480023042.01.T01:CDS
AGATGGTATCGCCTTCTGTC+TGG 0.422115 4:-80091221 MsG0480023042.01.T01:CDS
TTACATATTAGTCTTCAAAC+TGG 0.428958 4:+80089882 None:intergenic
GGGGCGAGGAAGTTTGTTCC+AGG 0.432644 4:-80091421 MsG0480023042.01.T01:CDS
TTGAAAACAATCCTCACCTC+TGG 0.437794 4:-80090371 MsG0480023042.01.T01:three_prime_UTR
TCTTGGAATGGCAGAAGAAT+GGG 0.438690 4:-80091171 MsG0480023042.01.T01:CDS
GTCTTGGAATGGCAGAAGAA+TGG 0.439174 4:-80091172 MsG0480023042.01.T01:CDS
TCCATTGTTCACTGGAGTCC+AGG 0.441153 4:+80090647 None:intergenic
AATAACTGCCTCTATGTTGC+TGG 0.443082 4:-80090870 MsG0480023042.01.T01:CDS
GTTCAGCCTCCTTTGCTACC+TGG 0.446688 4:-80091322 MsG0480023042.01.T01:CDS
TTCAAAGGCTAGATTCAAAA+GGG 0.447849 4:-80094450 MsG0480023042.01.T01:five_prime_UTR
GAACTTGTGGATCTCATCTC+AGG 0.450722 4:+80090237 None:intergenic
TCAGGCCTGAAAACAGTAGC+TGG 0.451037 4:-80091442 MsG0480023042.01.T01:CDS
TTGAACATAGGAACTGCGTT+TGG 0.451491 4:-80091252 MsG0480023042.01.T01:CDS
CTTTGAGTTTACAGCCGTCT+TGG 0.451770 4:+80090562 None:intergenic
CAAGCAATAGCAAGATCATC+AGG 0.451957 4:+80091295 None:intergenic
CTTCAGAATATTCCAGGAAC+AGG 0.452524 4:+80091065 None:intergenic
TTTGGCTGTGCCGTTCTTAG+TGG 0.453925 4:-80091034 MsG0480023042.01.T01:CDS
GTCCTGTCAGGTCTTTAGTT+AGG 0.455869 4:-80090330 MsG0480023042.01.T01:three_prime_UTR
TATTCGCTCCGGAAAAGTCT+TGG 0.457791 4:-80091188 MsG0480023042.01.T01:CDS
TGCAACGCATTTATTAAAAG+AGG 0.458169 4:-80094782 MsG0480023042.01.T01:five_prime_UTR
TGGAAGAATTTATCGATAGC+AGG 0.465908 4:-80090516 MsG0480023042.01.T01:three_prime_UTR
TAATATTGTTTACACAGATA+AGG 0.473668 4:-80090209 MsG0480023042.01.T01:three_prime_UTR
CGCAGTTCCTATGTTCAACT+CGG 0.476165 4:+80091257 None:intergenic
CCTGGAATATTCTGAAGCAT+TGG 0.479195 4:-80091059 MsG0480023042.01.T01:CDS
CTCTAGAGTTCAAGCTCCAC+TGG 0.479475 4:-80094312 MsG0480023042.01.T01:intron
CAATACATGAATACATATGA+TGG 0.482664 4:+80089815 None:intergenic
TGGATGCATATCTTTGATCC+TGG 0.484538 4:+80091403 None:intergenic
TGCGTTTGGTTTGCAAGAGA+TGG 0.486322 4:-80091238 MsG0480023042.01.T01:CDS
TCTCCGTTAAGTGAGATACT+TGG 0.486498 4:+80090603 None:intergenic
TTTCAGTTAGTAGGGAGAAG+AGG 0.490028 4:-80089936 MsG0480023042.01.T01:three_prime_UTR
CACTGTCATGAATACTGAAT+AGG 0.492284 4:-80090117 MsG0480023042.01.T01:three_prime_UTR
TCAGTATTCATGACAGTGAT+GGG 0.497705 4:+80090122 None:intergenic
CAATATTATTAGAGAACTTG+TGG 0.505877 4:+80090224 None:intergenic
AAAGTTCTGCTAATTCTCAA+AGG 0.508122 4:-80094337 MsG0480023042.01.T01:CDS
GATCGGGTTTCAAGTTTCAA+AGG 0.511888 4:-80094465 MsG0480023042.01.T01:five_prime_UTR
TGCCACTTGTACTTGTTTGG+TGG 0.513695 4:-80091010 MsG0480023042.01.T01:CDS
ACGACCATTCCATTGTTCAC+TGG 0.515165 4:+80090639 None:intergenic
AATTTATGGTCTACTATCGC+AGG 0.517084 4:-80090307 MsG0480023042.01.T01:three_prime_UTR
TTGCTGGAAAGGGTCCTGTC+AGG 0.517356 4:-80090342 MsG0480023042.01.T01:three_prime_UTR
AAGTTCTGCTAATTCTCAAA+GGG 0.522697 4:-80094336 MsG0480023042.01.T01:CDS
GGTATCGGATTCCTGTGAAT+AGG 0.523925 4:+80090668 None:intergenic
CATTCGGGTTTATATCAGGT+TGG 0.524469 4:+80091383 None:intergenic
TCTGGGAAATATTGCTGGAA+AGG 0.527015 4:-80090353 MsG0480023042.01.T01:three_prime_UTR
ATTCACAGGAATCCGATACC+TGG 0.530018 4:-80090665 MsG0480023042.01.T01:three_prime_UTR
AGTGAACAATGGAATGGTCG+TGG 0.531334 4:-80090637 MsG0480023042.01.T01:three_prime_UTR
ATTGCCATATTTGGTAGATA+GGG 0.532627 4:+80091096 None:intergenic
TTGTGAAAGGTAGCAAGTGG+AGG 0.535245 4:-80094628 MsG0480023042.01.T01:five_prime_UTR
CTGGGAAATATTGCTGGAAA+GGG 0.539618 4:-80090352 MsG0480023042.01.T01:three_prime_UTR
TTCAGTATTCATGACAGTGA+TGG 0.540389 4:+80090121 None:intergenic
GTTCACTGGAGTCCAGGTAT+CGG 0.541441 4:+80090653 None:intergenic
TGGTGGAAGAGATCCGTTGA+AGG 0.541573 4:-80090993 MsG0480023042.01.T01:CDS
CAGGCCTGAAAACAGTAGCT+GGG 0.543433 4:-80091441 MsG0480023042.01.T01:CDS
TGTGAAAGGTAGCAAGTGGA+GGG 0.545574 4:-80094627 MsG0480023042.01.T01:intron
AAAAGAAATTTCCAGACAGA+AGG 0.548143 4:+80091210 None:intergenic
AGAATATTCCAGGAACAGGC+GGG 0.548389 4:+80091069 None:intergenic
GAACAGATGGAGCTTTATCT+CGG 0.551686 4:-80090787 MsG0480023042.01.T01:CDS
CTCGGAGATGACCACAGCTA+TGG 0.552147 4:-80090769 MsG0480023042.01.T01:exon
TCAGGAAGACCAGGTAGCAA+AGG 0.554838 4:+80091313 None:intergenic
GCAGTTCCTATGTTCAACTC+GGG 0.558245 4:+80091258 None:intergenic
TTCCTAACTAAAGACCTGAC+AGG 0.558546 4:+80090328 None:intergenic
TGAAAACAGTAGCTGGGGCG+AGG 0.559188 4:-80091435 MsG0480023042.01.T01:CDS
CATATGTGAAGCCTATTCAC+AGG 0.559893 4:-80090679 MsG0480023042.01.T01:three_prime_UTR
GGACACATAGCTTGTGACAA+TGG 0.560235 4:+80094758 None:intergenic
GGAAGACCAGGTAGCAAAGG+AGG 0.560707 4:+80091316 None:intergenic
AGCAATATTTCCCAGAGGTG+AGG 0.565615 4:+80090360 None:intergenic
AATTGTGTGATTCTTTCTTG+GGG 0.566816 4:+80094652 None:intergenic
TATGCACTTGATTGCCAAGA+CGG 0.568382 4:-80090576 MsG0480023042.01.T01:three_prime_UTR
AACTGCCTCTATGTTGCTGG+TGG 0.569379 4:-80090867 MsG0480023042.01.T01:CDS
GCAAGATCATCAGGAAGACC+AGG 0.572772 4:+80091304 None:intergenic
AAGAACTCTTCGATCTGCTG+AGG 0.575958 4:-80090826 MsG0480023042.01.T01:CDS
TTCCACCAAACAAGTACAAG+TGG 0.579081 4:+80091008 None:intergenic
GCAACAATATGACATCAGTC+TGG 0.579923 4:-80090421 MsG0480023042.01.T01:three_prime_UTR
TGAAAACAATCCTCACCTCT+GGG 0.580142 4:-80090370 MsG0480023042.01.T01:three_prime_UTR
CTGCCTCTATGTTGCTGGTG+GGG 0.582217 4:-80090865 MsG0480023042.01.T01:CDS
GTGTACCCCGAGTTGAACAT+AGG 0.592563 4:-80091264 MsG0480023042.01.T01:CDS
CAGAATATTCCAGGAACAGG+CGG 0.595324 4:+80091068 None:intergenic
GGTGGAAGAGATCCGTTGAA+GGG 0.595602 4:-80090992 MsG0480023042.01.T01:CDS
TCATATACAACATCAATGCA+TGG 0.597223 4:+80090015 None:intergenic
ACGACCCTAATCGGAACAGA+TGG 0.598075 4:-80090800 MsG0480023042.01.T01:CDS
GTGTTATTCATAATGGCACA+TGG 0.603825 4:-80090734 MsG0480023042.01.T01:three_prime_UTR
ACTGCCTCTATGTTGCTGGT+GGG 0.605055 4:-80090866 MsG0480023042.01.T01:CDS
CGCCTCATAGATCCCTTCAA+CGG 0.606636 4:+80090980 None:intergenic
TGGTCTACTATCGCAGGGCG+CGG 0.607872 4:-80090301 MsG0480023042.01.T01:three_prime_UTR
ATTCCCCACCAGCAACATAG+AGG 0.608916 4:+80090862 None:intergenic
GCTCCGGAAAAGTCTTGGAA+TGG 0.613465 4:-80091183 MsG0480023042.01.T01:CDS
ATCCGTTGAAGGGATCTATG+AGG 0.615494 4:-80090982 MsG0480023042.01.T01:CDS
ACCTGGACTCCAGTGAACAA+TGG 0.615754 4:-80090648 MsG0480023042.01.T01:three_prime_UTR
TATTCCAGGAACAGGCGGGA+GGG 0.617917 4:+80091073 None:intergenic
AGGATTCATATCCCATGTTG+TGG 0.619493 4:-80089916 MsG0480023042.01.T01:three_prime_UTR
CAAGTGGCAACCACTAAGAA+CGG 0.620531 4:+80091024 None:intergenic
TCTACTATCGCAGGGCGCGG+TGG 0.621549 4:-80090298 MsG0480023042.01.T01:three_prime_UTR
TGTTTCGCTCTAAGGCTCTG+TGG 0.630448 4:-80090075 MsG0480023042.01.T01:three_prime_UTR
GACTCCAGTGAACAATGGAA+TGG 0.631245 4:-80090643 MsG0480023042.01.T01:three_prime_UTR
GTTGCTGGTGGGGAATGTAA+AGG 0.635408 4:-80090855 MsG0480023042.01.T01:CDS
TCAAAGGCTAGATTCAAAAG+GGG 0.636220 4:-80094449 MsG0480023042.01.T01:five_prime_UTR
ATATTCCAGGAACAGGCGGG+AGG 0.640068 4:+80091072 None:intergenic
CAAAGTCTATGATATGGCGA+CGG 0.642307 4:-80090544 MsG0480023042.01.T01:three_prime_UTR
GTGAACAATGGAATGGTCGT+GGG 0.651779 4:-80090636 MsG0480023042.01.T01:three_prime_UTR
ATTTATGGTCTACTATCGCA+GGG 0.652108 4:-80090306 MsG0480023042.01.T01:three_prime_UTR
AGGCCTGAAAACAGTAGCTG+GGG 0.656010 4:-80091440 MsG0480023042.01.T01:CDS
TGTCATCAAAAGAGACCGTG+AGG 0.661494 4:-80091144 MsG0480023042.01.T01:CDS
ACAGAGCACCTGATATGCTG+CGG 0.670843 4:-80090922 MsG0480023042.01.T01:CDS
ACAATGGAATGGTCGTGGGA+TGG 0.672115 4:-80090632 MsG0480023042.01.T01:three_prime_UTR
GTCATCAAAAGAGACCGTGA+GGG 0.680560 4:-80091143 MsG0480023042.01.T01:CDS
CAGTATTCATGACAGTGATG+GGG 0.681057 4:+80090123 None:intergenic
ATATAAACCCGAATGCACAC+AGG 0.688244 4:-80091375 MsG0480023042.01.T01:CDS
CAGTTCCTATGTTCAACTCG+GGG 0.692108 4:+80091259 None:intergenic
AATAAAAGGAACCATAGCTG+TGG 0.696250 4:+80090758 None:intergenic
TTTCCAGCAATATTTCCCAG+AGG 0.713795 4:+80090355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTACAAAAAAAAAAAAA+TGG + Chr4:80090370-80090389 None:intergenic 10.0%
!! AATTTAATTAATAAAACAAC+AGG + Chr4:80092780-80092799 None:intergenic 10.0%
!!! ATTTAATTTAATAAAACAAC+AGG + Chr4:80092634-80092653 None:intergenic 10.0%
!!! CTTGATAAAATAATTTATTT+TGG - Chr4:80092992-80093011 MsG0480023042.01.T01:intron 10.0%
!! ATTAGTTACGATATATATTT+AGG - Chr4:80094518-80094537 MsG0480023042.01.T01:intron 15.0%
!! TAGTATTATAACATATAGTA+GGG + Chr4:80090598-80090617 None:intergenic 15.0%
!! TATTTATATTTCAGTTAGTA+GGG - Chr4:80094620-80094639 MsG0480023042.01.T01:intron 15.0%
!! TTAGTATTATAACATATAGT+AGG + Chr4:80090599-80090618 None:intergenic 15.0%
!! TTATTTATATTTCAGTTAGT+AGG - Chr4:80094619-80094638 MsG0480023042.01.T01:intron 15.0%
!! TTTAGTATACATTATATGTT+GGG - Chr4:80090535-80090554 MsG0480023042.01.T01:three_prime_UTR 15.0%
!!! AAAAAGTATAAAAGAATAGA+GGG + Chr4:80091515-80091534 None:intergenic 15.0%
!!! AAATCACTCTTTAAATTTTT+AGG - Chr4:80090481-80090500 MsG0480023042.01.T01:three_prime_UTR 15.0%
!!! AATCACTCTTTAAATTTTTA+GGG - Chr4:80090482-80090501 MsG0480023042.01.T01:three_prime_UTR 15.0%
!!! TTTGAAATTTTTATACCAAT+GGG - Chr4:80091714-80091733 MsG0480023042.01.T01:intron 15.0%
!!! TTTTAGTATACATTATATGT+TGG - Chr4:80090534-80090553 MsG0480023042.01.T01:three_prime_UTR 15.0%
!! AAAATTATTACGTTCAAAGT+AGG + Chr4:80092490-80092509 None:intergenic 20.0%
!! TAATATTGTTTACACAGATA+AGG - Chr4:80094355-80094374 MsG0480023042.01.T01:CDS 20.0%
!! TAATGCATATTTGATTCATA+AGG + Chr4:80090632-80090651 None:intergenic 20.0%
!! TAATTTAGAGACTAAATTCA+TGG + Chr4:80090841-80090860 None:intergenic 20.0%
!! TTATGAATAACACCAATAAA+AGG + Chr4:80093823-80093842 None:intergenic 20.0%
!! TTCAACATATATATACTAAC+AGG - Chr4:80093053-80093072 MsG0480023042.01.T01:intron 20.0%
!!! ATATACTTTAAGGACTAAAT+TGG - Chr4:80091262-80091281 MsG0480023042.01.T01:CDS 20.0%
!!! ATCATAATTCAGAACTATTT+TGG + Chr4:80090680-80090699 None:intergenic 20.0%
!!! CAAAAAGTATAAAAGAATAG+AGG + Chr4:80091516-80091535 None:intergenic 20.0%
!!! GTTTGAAATTTTTATACCAA+TGG - Chr4:80091713-80091732 MsG0480023042.01.T01:intron 20.0%
!!! TTATTTTGGTGCATATTTTA+GGG - Chr4:80093006-80093025 MsG0480023042.01.T01:intron 20.0%
!!! TTTATTGGTGTTATTCATAA+TGG - Chr4:80093823-80093842 MsG0480023042.01.T01:intron 20.0%
!!! TTTATTTTGGTGCATATTTT+AGG - Chr4:80093005-80093024 MsG0480023042.01.T01:intron 20.0%
!!! TTTTGTAAAGATGAAGATTT+TGG - Chr4:80094401-80094420 MsG0480023042.01.T01:five_prime_UTR 20.0%
! AAAATTGTGTGATTCTTTCT+TGG + Chr4:80089917-80089936 None:intergenic 25.0%
! AAATGGAACAGTAAATCAAA+TGG + Chr4:80090353-80090372 None:intergenic 25.0%
! AAATTGTGTGATTCTTTCTT+GGG + Chr4:80089916-80089935 None:intergenic 25.0%
! AAGAAAAGCAAAGAAAGAAA+TGG + Chr4:80090030-80090049 None:intergenic 25.0%
! AGAAAAGCAAAGAAAGAAAT+GGG + Chr4:80090029-80090048 None:intergenic 25.0%
! CAATACATGAATACATATGA+TGG + Chr4:80094752-80094771 None:intergenic 25.0%
! CAATATTATTAGAGAACTTG+TGG + Chr4:80094343-80094362 None:intergenic 25.0%
! GTGTATTTGTGTGTTTATTA+AGG - Chr4:80090397-80090416 MsG0480023042.01.T01:three_prime_UTR 25.0%
! TAAACTCAAAGTCTATGATA+TGG - Chr4:80094014-80094033 MsG0480023042.01.T01:intron 25.0%
! TATATACTTAAGGACTCAAT+TGG - Chr4:80090975-80090994 MsG0480023042.01.T01:CDS 25.0%
! TATTACTATCTATCAAACAG+AGG + Chr4:80090657-80090676 None:intergenic 25.0%
! TTGCAGCAATTAAAGTAAAA+CGG - Chr4:80092908-80092927 MsG0480023042.01.T01:intron 25.0%
! TTTCAAAGAACTAAACTATG+AGG + Chr4:80089985-80090004 None:intergenic 25.0%
!! AAAGAATCAAAGTACCAAAA+AGG + Chr4:80093035-80093054 None:intergenic 25.0%
!! AATCACACAATTTTTGTGAA+AGG - Chr4:80089923-80089942 MsG0480023042.01.T01:three_prime_UTR 25.0%
!! AATTACTGAAGAATTTTCCA+TGG - Chr4:80094712-80094731 MsG0480023042.01.T01:five_prime_UTR 25.0%
!! CTTTTCTATACTTACTAGAT+CGG - Chr4:80090082-80090101 MsG0480023042.01.T01:three_prime_UTR 25.0%
!! TTTTCTATACTTACTAGATC+GGG - Chr4:80090083-80090102 MsG0480023042.01.T01:three_prime_UTR 25.0%
!!! AATTTTTAGGGTTCTTAGTT+TGG - Chr4:80090494-80090513 MsG0480023042.01.T01:three_prime_UTR 25.0%
!!! ATTCTTTTACTTTTTGTGAG+AGG - Chr4:80091322-80091341 MsG0480023042.01.T01:CDS 25.0%
!!! ATTTTTAGGGTTCTTAGTTT+GGG - Chr4:80090495-80090514 MsG0480023042.01.T01:three_prime_UTR 25.0%
!!! TATTTTAGGGACTAAATTGA+AGG - Chr4:80091009-80091028 MsG0480023042.01.T01:CDS 25.0%
!!! TGAATAAGTGTCGTTTTAAA+AGG + Chr4:80089830-80089849 None:intergenic 25.0%
!!! TTACATATTAGTCTTCAAAC+TGG + Chr4:80094685-80094704 None:intergenic 25.0%
AAAAGAAATTTCCAGACAGA+AGG + Chr4:80093357-80093376 None:intergenic 30.0%
AAAGTTCTGCTAATTCTCAA+AGG - Chr4:80090227-80090246 MsG0480023042.01.T01:three_prime_UTR 30.0%
AAGCTGTGATTTCAGTTAAA+TGG - Chr4:80090455-80090474 MsG0480023042.01.T01:three_prime_UTR 30.0%
AAGTTCTGCTAATTCTCAAA+GGG - Chr4:80090228-80090247 MsG0480023042.01.T01:three_prime_UTR 30.0%
AATCCAAGTATCTCACTTAA+CGG - Chr4:80093958-80093977 MsG0480023042.01.T01:intron 30.0%
AATTGTGTGATTCTTTCTTG+GGG + Chr4:80089915-80089934 None:intergenic 30.0%
AGCTGTGATTTCAGTTAAAT+GGG - Chr4:80090456-80090475 MsG0480023042.01.T01:three_prime_UTR 30.0%
AGTTCAAAAAGTCATACTAC+TGG + Chr4:80091884-80091903 None:intergenic 30.0%
ATTGCCATATTTGGTAGATA+GGG + Chr4:80093471-80093490 None:intergenic 30.0%
CAAAGTAGGTGATAAAATGT+AGG + Chr4:80092476-80092495 None:intergenic 30.0%
CTTGAACATCTTAATAAGCA+AGG - Chr4:80090936-80090955 MsG0480023042.01.T01:CDS 30.0%
GAATGTCAATATGCCAAAAA+GGG - Chr4:80091753-80091772 MsG0480023042.01.T01:intron 30.0%
GCTAAATCTCGTTGAAAAAA+TGG + Chr4:80090184-80090203 None:intergenic 30.0%
GGTCTTTAGTTAGGAATTTA+TGG - Chr4:80094243-80094262 MsG0480023042.01.T01:intron 30.0%
GTTATCACAGTTGTATCTTT+AGG - Chr4:80094591-80094610 MsG0480023042.01.T01:intron 30.0%
GTTCAAAAAGTCATACTACT+GGG + Chr4:80091883-80091902 None:intergenic 30.0%
TAAATCTAACGATCTACAGT+TGG - Chr4:80092013-80092032 MsG0480023042.01.T01:intron 30.0%
TACACAGATAAGGAAATTGA+TGG - Chr4:80094365-80094384 MsG0480023042.01.T01:exon 30.0%
TAGTTTCATGCTTCATTATG+CGG + Chr4:80092660-80092679 None:intergenic 30.0%
TATCAGAAAAAAAGGCAAGT+AGG + Chr4:80092288-80092307 None:intergenic 30.0%
TCAAAGCAAATTAAGCATCT+TGG + Chr4:80090156-80090175 None:intergenic 30.0%
TCAACACTTCATTAGGATTT+AGG - Chr4:80091853-80091872 MsG0480023042.01.T01:intron 30.0%
TCACAAATCTAAGTTTGTGA+AGG - Chr4:80092724-80092743 MsG0480023042.01.T01:intron 30.0%
TCACAGCTTATATTCAACTT+AGG + Chr4:80090444-80090463 None:intergenic 30.0%
TCATATACAACATCAATGCA+TGG + Chr4:80094552-80094571 None:intergenic 30.0%
TGCAACGCATTTATTAAAAG+AGG - Chr4:80089782-80089801 MsG0480023042.01.T01:three_prime_UTR 30.0%
TGCTATTGTAAAGTAGATTC+AGG - Chr4:80093104-80093123 MsG0480023042.01.T01:intron 30.0%
TTAATAAGCAAGGACTGAAT+TGG - Chr4:80090946-80090965 MsG0480023042.01.T01:CDS 30.0%
TTATGTCTCAACACTTCATT+AGG - Chr4:80091846-80091865 MsG0480023042.01.T01:intron 30.0%
TTCAAAGGCTAGATTCAAAA+GGG - Chr4:80090114-80090133 MsG0480023042.01.T01:three_prime_UTR 30.0%
TTCTCCAAACTCTATTCTAA+AGG - Chr4:80092126-80092145 MsG0480023042.01.T01:intron 30.0%
TTGGCAGGTTTATATACTTA+AGG - Chr4:80090965-80090984 MsG0480023042.01.T01:CDS 30.0%
TTTACTTTAATTGCTGCAAG+CGG + Chr4:80092907-80092926 None:intergenic 30.0%
TTTCAAAGGCTAGATTCAAA+AGG - Chr4:80090113-80090132 MsG0480023042.01.T01:three_prime_UTR 30.0%
! CTTTTCTTTTGCAGTTTCAA+AGG - Chr4:80090042-80090061 MsG0480023042.01.T01:three_prime_UTR 30.0%
! GAAATTTCTTTTATTCGCTC+CGG - Chr4:80093365-80093384 MsG0480023042.01.T01:intron 30.0%
! GAAATTTTTATACCAATGGG+AGG - Chr4:80091717-80091736 MsG0480023042.01.T01:intron 30.0%
! GATTCAAATCGCATTTGTTT+TGG - Chr4:80090286-80090305 MsG0480023042.01.T01:three_prime_UTR 30.0%
! GGAGATAGAGTGATATTTTA+GGG - Chr4:80090996-80091015 MsG0480023042.01.T01:CDS 30.0%
! GTAGTATGACTTTTTGAACT+AGG - Chr4:80091884-80091903 MsG0480023042.01.T01:intron 30.0%
! TGGAGATAGAGTGATATTTT+AGG - Chr4:80090995-80091014 MsG0480023042.01.T01:CDS 30.0%
!! AGATTTTGGCAATAGAATTG+AGG - Chr4:80094415-80094434 MsG0480023042.01.T01:five_prime_UTR 30.0%
!! ATATTTTAGGGATGCCTTTT+TGG - Chr4:80093018-80093037 MsG0480023042.01.T01:intron 30.0%
!!! TATTGTGGTTCTAGCATTTT+AGG - Chr4:80092161-80092180 MsG0480023042.01.T01:intron 30.0%
!!! TGGATAAATTTTGAGATCCA+TGG + Chr4:80094732-80094751 None:intergenic 30.0%
AAGACAGCATACAATGTGTA+AGG + Chr4:80092088-80092107 None:intergenic 35.0%
AATAAAAGGAACCATAGCTG+TGG + Chr4:80093809-80093828 None:intergenic 35.0%
AATTTATGGTCTACTATCGC+AGG - Chr4:80094257-80094276 MsG0480023042.01.T01:intron 35.0%
ACAAACATCATGAGATCAAC+AGG + Chr4:80092844-80092863 None:intergenic 35.0%
ACAACGCACGTACAAATAAA+TGG - Chr4:80093618-80093637 MsG0480023042.01.T01:intron 35.0%
ACTAAACTATGAGGTTGCTA+AGG + Chr4:80089976-80089995 None:intergenic 35.0%
ACTAACAGGTAAAGTTTCAC+AGG - Chr4:80093067-80093086 MsG0480023042.01.T01:intron 35.0%
ATATTGCAGAACATGTAGCT+TGG - Chr4:80091777-80091796 MsG0480023042.01.T01:intron 35.0%
ATTTATGGTCTACTATCGCA+GGG - Chr4:80094258-80094277 MsG0480023042.01.T01:intron 35.0%
CAAAGAAAGAAATGGGTCAT+TGG + Chr4:80090022-80090041 None:intergenic 35.0%
CAAGCACAAGTGAATCAATA+AGG + Chr4:80091540-80091559 None:intergenic 35.0%
CACTGTCATGAATACTGAAT+AGG - Chr4:80094447-80094466 MsG0480023042.01.T01:five_prime_UTR 35.0%
CTAAACTATGAGGTTGCTAA+GGG + Chr4:80089975-80089994 None:intergenic 35.0%
CTTAATCTACAATGGTCTAC+AGG + Chr4:80091982-80092001 None:intergenic 35.0%
GAAACTAATATTGCCTTGGT+TGG - Chr4:80092673-80092692 MsG0480023042.01.T01:intron 35.0%
GAATCAACTGAAATTACCAG+TGG + Chr4:80090271-80090290 None:intergenic 35.0%
GAGACTCTCTTAATCTACAA+TGG + Chr4:80091990-80092009 None:intergenic 35.0%
GATCTCATGATGTTTGTGAT+GGG - Chr4:80092847-80092866 MsG0480023042.01.T01:intron 35.0%
GATTGCCATATTTGGTAGAT+AGG + Chr4:80093472-80093491 None:intergenic 35.0%
GCATGAAACTAATATTGCCT+TGG - Chr4:80092669-80092688 MsG0480023042.01.T01:intron 35.0%
GGAATGTCAATATGCCAAAA+AGG - Chr4:80091752-80091771 MsG0480023042.01.T01:intron 35.0%
GTAAAGTTGTTGTCATGTGA+CGG - Chr4:80091362-80091381 MsG0480023042.01.T01:CDS 35.0%
TAAGTTTGTGAAGGAAACTC+TGG - Chr4:80092733-80092752 MsG0480023042.01.T01:intron 35.0%
TATTGATGCGTAGTATGTGT+TGG - Chr4:80092242-80092261 MsG0480023042.01.T01:intron 35.0%
TATTGCAGAACATGTAGCTT+GGG - Chr4:80091778-80091797 MsG0480023042.01.T01:intron 35.0%
TCAAAGGCTAGATTCAAAAG+GGG - Chr4:80090115-80090134 MsG0480023042.01.T01:three_prime_UTR 35.0%
TCAGTATTCATGACAGTGAT+GGG + Chr4:80094445-80094464 None:intergenic 35.0%
TCATTTACAATGCGAATGAC+AGG - Chr4:80091670-80091689 MsG0480023042.01.T01:intron 35.0%
TCGCATTGTAAATGAAGACA+CGG + Chr4:80091665-80091684 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - Chr4:80091417-80091436 MsG0480023042.01.T01:CDS 35.0%
TGAAAGCAATATTGCCTTGT+TGG - Chr4:80092818-80092837 MsG0480023042.01.T01:intron 35.0%
TGATCTCATGATGTTTGTGA+TGG - Chr4:80092846-80092865 MsG0480023042.01.T01:intron 35.0%
TGGAAGAATTTATCGATAGC+AGG - Chr4:80094048-80094067 MsG0480023042.01.T01:intron 35.0%
TTACTTTAATTGCTGCAAGC+GGG + Chr4:80092906-80092925 None:intergenic 35.0%
TTCAGTATTCATGACAGTGA+TGG + Chr4:80094446-80094465 None:intergenic 35.0%
TTGACCCTATCTACCAAATA+TGG - Chr4:80093464-80093483 MsG0480023042.01.T01:intron 35.0%
! AATGGCACATGGTTTTTGAA+GGG - Chr4:80093841-80093860 MsG0480023042.01.T01:intron 35.0%
! ACAGCTATGGTTCCTTTTAT+TGG - Chr4:80093808-80093827 MsG0480023042.01.T01:intron 35.0%
! AGTAGTCGATTCAAAAAGTC+TGG + Chr4:80092315-80092334 None:intergenic 35.0%
! CAAACTCTATTCTAAAGGTG+TGG - Chr4:80092131-80092150 MsG0480023042.01.T01:intron 35.0%
! GCAATGAAATTTTTCCCTCA+CGG + Chr4:80093438-80093457 None:intergenic 35.0%
! GTGTTATTCATAATGGCACA+TGG - Chr4:80093830-80093849 MsG0480023042.01.T01:intron 35.0%
! GTTCTGCAATATTCCCTTTT+TGG + Chr4:80091769-80091788 None:intergenic 35.0%
! TAATGGCACATGGTTTTTGA+AGG - Chr4:80093840-80093859 MsG0480023042.01.T01:intron 35.0%
! TATTCTAAAGGTGTGGAACT+GGG - Chr4:80092138-80092157 MsG0480023042.01.T01:intron 35.0%
! TGTTTGTGATGGGAATAACT+TGG - Chr4:80092857-80092876 MsG0480023042.01.T01:intron 35.0%
! TTTTTGTGAAAGGTAGCAAG+TGG - Chr4:80089933-80089952 MsG0480023042.01.T01:three_prime_UTR 35.0%
! TTTTTGTTCCTGTGTGCATT+CGG + Chr4:80093200-80093219 None:intergenic 35.0%
!! AAATCACGTTGATGGTGATT+GGG - Chr4:80092403-80092422 MsG0480023042.01.T01:intron 35.0%
!! CACACCTTTAGAATAGAGTT+TGG + Chr4:80092133-80092152 None:intergenic 35.0%
!! CTGGAAGGTATCAGAAAAAA+AGG + Chr4:80092296-80092315 None:intergenic 35.0%
!! CTGGAATATTCTGAAGCATT+GGG - Chr4:80093506-80093525 MsG0480023042.01.T01:intron 35.0%
!! CTTATTGATTCACTTGTGCT+TGG - Chr4:80091538-80091557 MsG0480023042.01.T01:intron 35.0%
!! GTAAATGTTGTTTCGCTCTA+AGG - Chr4:80094481-80094500 MsG0480023042.01.T01:five_prime_UTR 35.0%
!! TATTCTGAAGCATTGGGATT+TGG - Chr4:80093512-80093531 MsG0480023042.01.T01:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + Chr4:80091418-80091437 None:intergenic 35.0%
AACAGCTTGGGCTAATATGA+AGG + Chr4:80092550-80092569 None:intergenic 40.0%
AATAACTGCCTCTATGTTGC+TGG - Chr4:80093694-80093713 MsG0480023042.01.T01:intron 40.0%
AATCTACAATGGTCTACAGG+CGG + Chr4:80091979-80091998 None:intergenic 40.0%
ACAGCATACAATGTGTAAGG+TGG + Chr4:80092085-80092104 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - Chr4:80091411-80091430 MsG0480023042.01.T01:CDS 40.0%
ACATCCATTGCAGCATTCTA+TGG - Chr4:80092350-80092369 MsG0480023042.01.T01:intron 40.0%
AGGATTCATATCCCATGTTG+TGG - Chr4:80094648-80094667 MsG0480023042.01.T01:five_prime_UTR 40.0%
ATATAAACCCGAATGCACAC+AGG - Chr4:80093189-80093208 MsG0480023042.01.T01:intron 40.0%
ATATTGACATTCCAGCCTTG+AGG + Chr4:80091745-80091764 None:intergenic 40.0%
ATCGATAGCAGGCTTCATTT+AGG - Chr4:80094059-80094078 MsG0480023042.01.T01:intron 40.0%
ATTCCGGTGCATGTATGTAT+CGG - Chr4:80092603-80092622 MsG0480023042.01.T01:intron 40.0%
CAAAGTCTATGATATGGCGA+CGG - Chr4:80094020-80094039 MsG0480023042.01.T01:intron 40.0%
CAAGCAATAGCAAGATCATC+AGG + Chr4:80093272-80093291 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - Chr4:80091412-80091431 MsG0480023042.01.T01:CDS 40.0%
CAGTATTCATGACAGTGATG+GGG + Chr4:80094444-80094463 None:intergenic 40.0%
CATATGTGAAGCCTATTCAC+AGG - Chr4:80093885-80093904 MsG0480023042.01.T01:intron 40.0%
CATCCATTGCAGCATTCTAT+GGG - Chr4:80092351-80092370 MsG0480023042.01.T01:intron 40.0%
CCAATGCTTCAGAATATTCC+AGG + Chr4:80093508-80093527 None:intergenic 40.0%
CGAGTTTGTGAAGGAAATTC+CGG - Chr4:80092587-80092606 MsG0480023042.01.T01:intron 40.0%
CGCATTGTAAATGAAGACAC+GGG + Chr4:80091664-80091683 None:intergenic 40.0%
CGGAATTTCCTTCACAAACT+CGG + Chr4:80092589-80092608 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - Chr4:80091443-80091462 MsG0480023042.01.T01:CDS 40.0%
CTGGGAAATATTGCTGGAAA+GGG - Chr4:80094212-80094231 MsG0480023042.01.T01:intron 40.0%
CTTCAGAATATTCCAGGAAC+AGG + Chr4:80093502-80093521 None:intergenic 40.0%
GAATGCTGCAATGGATGTTT+AGG + Chr4:80092348-80092367 None:intergenic 40.0%
GACATGTCAAATCACGTTGA+TGG - Chr4:80092395-80092414 MsG0480023042.01.T01:intron 40.0%
GAGTTTGGAGAATATCGCTT+CGG + Chr4:80092118-80092137 None:intergenic 40.0%
GCAACAATATGACATCAGTC+TGG - Chr4:80094143-80094162 MsG0480023042.01.T01:intron 40.0%
GTCTTCATTCACAACGTGAA+TGG - Chr4:80091182-80091201 MsG0480023042.01.T01:CDS 40.0%
TACTTTAATTGCTGCAAGCG+GGG + Chr4:80092905-80092924 None:intergenic 40.0%
TATCCCATAGAATGCTGCAA+TGG + Chr4:80092357-80092376 None:intergenic 40.0%
TATGCACTTGATTGCCAAGA+CGG - Chr4:80093988-80094007 MsG0480023042.01.T01:intron 40.0%
TATTGACATTCCAGCCTTGA+GGG + Chr4:80091744-80091763 None:intergenic 40.0%
TCACAAATCCGAGTTTGTGA+AGG - Chr4:80092578-80092597 MsG0480023042.01.T01:intron 40.0%
TCACCACTTTCTGTAAGCTT+TGG - Chr4:80090772-80090791 MsG0480023042.01.T01:exon 40.0%
TCACGTTGTGAATGAAGACA+CGG + Chr4:80091181-80091200 None:intergenic 40.0%
TCATATTAGCCCAAGCTGTT+GGG - Chr4:80092550-80092569 MsG0480023042.01.T01:intron 40.0%
TCTCCAAAGCTTACAGAAAG+TGG + Chr4:80090778-80090797 None:intergenic 40.0%
TCTCCGTTAAGTGAGATACT+TGG + Chr4:80093964-80093983 None:intergenic 40.0%
TCTGGGAAATATTGCTGGAA+AGG - Chr4:80094211-80094230 MsG0480023042.01.T01:intron 40.0%
TCTTGGAATGGCAGAAGAAT+GGG - Chr4:80093393-80093412 MsG0480023042.01.T01:intron 40.0%
TGAAAACAATCCTCACCTCT+GGG - Chr4:80094194-80094213 MsG0480023042.01.T01:intron 40.0%
TGAGTTCAATAGACCAACCA+AGG + Chr4:80092689-80092708 None:intergenic 40.0%
TGCAATGTCAAAAGCCTAGA+AGG + Chr4:80090738-80090757 None:intergenic 40.0%
TGGATGCATATCTTTGATCC+TGG + Chr4:80093164-80093183 None:intergenic 40.0%
TTCATATTAGCCCAAGCTGT+TGG - Chr4:80092549-80092568 MsG0480023042.01.T01:intron 40.0%
TTCCACCAAACAAGTACAAG+TGG + Chr4:80093559-80093578 None:intergenic 40.0%
TTCCTAACTAAAGACCTGAC+AGG + Chr4:80094239-80094258 None:intergenic 40.0%
TTGAAAACAATCCTCACCTC+TGG - Chr4:80094193-80094212 MsG0480023042.01.T01:intron 40.0%
TTGAACATAGGAACTGCGTT+TGG - Chr4:80093312-80093331 MsG0480023042.01.T01:intron 40.0%
TTTCAGTTAGTAGGGAGAAG+AGG - Chr4:80094628-80094647 MsG0480023042.01.T01:five_prime_UTR 40.0%
TTTCCAGCAATATTTCCCAG+AGG + Chr4:80094212-80094231 None:intergenic 40.0%
! AACAGCTTTTGCCACAACAT+GGG + Chr4:80094662-80094681 None:intergenic 40.0%
! AGTAGACTCTTTTTACGCAG+TGG - Chr4:80094789-80094808 MsG0480023042.01.T01:five_prime_UTR 40.0%
! CATTCGGGTTTATATCAGGT+TGG + Chr4:80093184-80093203 None:intergenic 40.0%
! CTATTCTAAAGGTGTGGAAC+TGG - Chr4:80092137-80092156 MsG0480023042.01.T01:intron 40.0%
! CTTTTTGTGAGAGGTAACCT+TGG - Chr4:80091331-80091350 MsG0480023042.01.T01:CDS 40.0%
! GAACAGATGGAGCTTTATCT+CGG - Chr4:80093777-80093796 MsG0480023042.01.T01:intron 40.0%
! GCAGCTCTTGTTTCACTTAA+TGG - Chr4:80094104-80094123 MsG0480023042.01.T01:intron 40.0%
! GTCGATTCAAAAAGTCTGGA+AGG + Chr4:80092311-80092330 None:intergenic 40.0%
! TGTGCATTCGGGTTTATATC+AGG + Chr4:80093188-80093207 None:intergenic 40.0%
! TTGTGATGGGAATAACTTGG+TGG - Chr4:80092860-80092879 MsG0480023042.01.T01:intron 40.0%
! TTGTTTTCAACGCGTCTGTT+TGG + Chr4:80094183-80094202 None:intergenic 40.0%
! TTTTGTTCCTGTGTGCATTC+GGG + Chr4:80093199-80093218 None:intergenic 40.0%
!! AGACGCGTTTTAACAGAAGA+CGG + Chr4:80092523-80092542 None:intergenic 40.0%
!! ATAAAAGAATAGAGGGCACC+CGG + Chr4:80091508-80091527 None:intergenic 40.0%
!! ATCCTCCACTTCTAGCTTTA+CGG - Chr4:80091948-80091967 MsG0480023042.01.T01:intron 40.0%
!! ATGGCACATGGTTTTTGAAG+GGG - Chr4:80093842-80093861 MsG0480023042.01.T01:intron 40.0%
!! CAAATCACGTTGATGGTGAT+TGG - Chr4:80092402-80092421 MsG0480023042.01.T01:intron 40.0%
!! CCTGGAATATTCTGAAGCAT+TGG - Chr4:80093505-80093524 MsG0480023042.01.T01:intron 40.0%
!! CTACTTGGATCCTCTAAAAC+CGG + Chr4:80092052-80092071 None:intergenic 40.0%
!! GATCGGGTTTCAAGTTTCAA+AGG - Chr4:80090099-80090118 MsG0480023042.01.T01:three_prime_UTR 40.0%
AAGCTCCATCTGTTCCGATT+AGG + Chr4:80093772-80093791 None:intergenic 45.0%
ACGACCATTCCATTGTTCAC+TGG + Chr4:80093928-80093947 None:intergenic 45.0%
AGAATATTCCAGGAACAGGC+GGG + Chr4:80093498-80093517 None:intergenic 45.0%
AGCAATATTTCCCAGAGGTG+AGG + Chr4:80094207-80094226 None:intergenic 45.0%
AGCTCCATCTGTTCCGATTA+GGG + Chr4:80093771-80093790 None:intergenic 45.0%
AGTGAACAATGGAATGGTCG+TGG - Chr4:80093927-80093946 MsG0480023042.01.T01:intron 45.0%
ATCCGTTGAAGGGATCTATG+AGG - Chr4:80093582-80093601 MsG0480023042.01.T01:intron 45.0%
ATGAGATCAACAGGCCAACA+AGG + Chr4:80092835-80092854 None:intergenic 45.0%
ATTCACAGGAATCCGATACC+TGG - Chr4:80093899-80093918 MsG0480023042.01.T01:intron 45.0%
CAAGTGGCAACCACTAAGAA+CGG + Chr4:80093543-80093562 None:intergenic 45.0%
CAATGGATGTTTAGGCTGAG+GGG + Chr4:80092340-80092359 None:intergenic 45.0%
CACGTTGTGAATGAAGACAC+GGG + Chr4:80091180-80091199 None:intergenic 45.0%
CAGAATATTCCAGGAACAGG+CGG + Chr4:80093499-80093518 None:intergenic 45.0%
CAGTTCCTATGTTCAACTCG+GGG + Chr4:80093308-80093327 None:intergenic 45.0%
CGAATGACAGGAATTGTCGA+AGG - Chr4:80091682-80091701 MsG0480023042.01.T01:intron 45.0%
CGCAGTTCCTATGTTCAACT+CGG + Chr4:80093310-80093329 None:intergenic 45.0%
CTGAGGTTTACGACCCTAAT+CGG - Chr4:80093755-80093774 MsG0480023042.01.T01:intron 45.0%
CTTCCGATACATACATGCAC+CGG + Chr4:80092609-80092628 None:intergenic 45.0%
GAACTTGTGGATCTCATCTC+AGG + Chr4:80094330-80094349 None:intergenic 45.0%
GACTCCAGTGAACAATGGAA+TGG - Chr4:80093921-80093940 MsG0480023042.01.T01:intron 45.0%
GCAATGGATGTTTAGGCTGA+GGG + Chr4:80092341-80092360 None:intergenic 45.0%
GCAGTTCCTATGTTCAACTC+GGG + Chr4:80093309-80093328 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - Chr4:80091442-80091461 MsG0480023042.01.T01:CDS 45.0%
GCTGCGTACAATACACCAAA+TGG - Chr4:80091439-80091458 MsG0480023042.01.T01:CDS 45.0%
GTCATCAAAAGAGACCGTGA+GGG - Chr4:80093421-80093440 MsG0480023042.01.T01:intron 45.0%
GTCCTGTCAGGTCTTTAGTT+AGG - Chr4:80094234-80094253 MsG0480023042.01.T01:intron 45.0%
GTCTTGGAATGGCAGAAGAA+TGG - Chr4:80093392-80093411 MsG0480023042.01.T01:intron 45.0%
GTGAACAATGGAATGGTCGT+GGG - Chr4:80093928-80093947 MsG0480023042.01.T01:intron 45.0%
GTTGTTGTCATGTGACGGTA+AGG - Chr4:80091367-80091386 MsG0480023042.01.T01:CDS 45.0%
TAAGCAAGGACTGAATTGGC+AGG - Chr4:80090950-80090969 MsG0480023042.01.T01:CDS 45.0%
TATTCGCTCCGGAAAAGTCT+TGG - Chr4:80093376-80093395 MsG0480023042.01.T01:intron 45.0%
TCATTCACAACGTGAATGGC+AGG - Chr4:80091186-80091205 MsG0480023042.01.T01:CDS 45.0%
TGAATGGCAGGAATTGTCGA+AGG - Chr4:80091198-80091217 MsG0480023042.01.T01:CDS 45.0%
TGCAATGGATGTTTAGGCTG+AGG + Chr4:80092342-80092361 None:intergenic 45.0%
TGGAGAGAGAGTGATGCTTT+AGG - Chr4:80091282-80091301 MsG0480023042.01.T01:CDS 45.0%
TGTCATCAAAAGAGACCGTG+AGG - Chr4:80093420-80093439 MsG0480023042.01.T01:intron 45.0%
TGTGAAAGGTAGCAAGTGGA+GGG - Chr4:80089937-80089956 MsG0480023042.01.T01:three_prime_UTR 45.0%
TTGTGAAAGGTAGCAAGTGG+AGG - Chr4:80089936-80089955 MsG0480023042.01.T01:three_prime_UTR 45.0%
! ATGATATGGCGACGGATTCA+TGG - Chr4:80094028-80094047 MsG0480023042.01.T01:intron 45.0%
! CTGCCATTCCAAGACTTTTC+CGG + Chr4:80093387-80093406 None:intergenic 45.0%
! CTGCGGAAACGTCATCTTTT+TGG - Chr4:80093659-80093678 MsG0480023042.01.T01:intron 45.0%
! CTTTGAGTTTACAGCCGTCT+TGG + Chr4:80094005-80094024 None:intergenic 45.0%
! GAACAGCTTTTGCCACAACA+TGG + Chr4:80094663-80094682 None:intergenic 45.0%
! GGACACATAGCTTGTGACAA+TGG + Chr4:80089809-80089828 None:intergenic 45.0%
! GGTATCGGATTCCTGTGAAT+AGG + Chr4:80093899-80093918 None:intergenic 45.0%
! GGTTGCCACTTGTACTTGTT+TGG - Chr4:80093551-80093570 MsG0480023042.01.T01:intron 45.0%
! TCACCTCTGGGAAATATTGC+TGG - Chr4:80094206-80094225 MsG0480023042.01.T01:intron 45.0%
! TGCCACTTGTACTTGTTTGG+TGG - Chr4:80093554-80093573 MsG0480023042.01.T01:intron 45.0%
!! ACATGGTTTTTGAAGGGGCT+CGG - Chr4:80093847-80093866 MsG0480023042.01.T01:intron 45.0%
!! CACGATAAAGCCGGTTTTAG+AGG - Chr4:80092039-80092058 MsG0480023042.01.T01:intron 45.0%
!! GTCATTGATTCACCTGTGCT+AGG - Chr4:80091053-80091072 MsG0480023042.01.T01:CDS 45.0%
!! TGCGTTTGGTTTGCAAGAGA+TGG - Chr4:80093326-80093345 MsG0480023042.01.T01:intron 45.0%
!!! CGGTTTTAGAGGATCCAAGT+AGG - Chr4:80092050-80092069 MsG0480023042.01.T01:intron 45.0%
!! TTATATTTATATATACTTTA+AGG - Chr4:80091252-80091271 MsG0480023042.01.T01:CDS 5.0%
AAAACACCCAGACCTAGCAC+AGG + Chr4:80091068-80091087 None:intergenic 50.0%
AACTGCCTCTATGTTGCTGG+TGG - Chr4:80093697-80093716 MsG0480023042.01.T01:intron 50.0%
ACAATGGAATGGTCGTGGGA+TGG - Chr4:80093932-80093951 MsG0480023042.01.T01:intron 50.0%
ACCTGGACTCCAGTGAACAA+TGG - Chr4:80093916-80093935 MsG0480023042.01.T01:intron 50.0%
ACGACCCTAATCGGAACAGA+TGG - Chr4:80093764-80093783 MsG0480023042.01.T01:intron 50.0%
ACTGCCTCTATGTTGCTGGT+GGG - Chr4:80093698-80093717 MsG0480023042.01.T01:intron 50.0%
AGATGGTATCGCCTTCTGTC+TGG - Chr4:80093343-80093362 MsG0480023042.01.T01:intron 50.0%
AGGCCTGAAAACAGTAGCTG+GGG - Chr4:80093124-80093143 MsG0480023042.01.T01:intron 50.0%
AGTTGGCTGCACGATAAAGC+CGG - Chr4:80092030-80092049 MsG0480023042.01.T01:intron 50.0%
ATTCCCCACCAGCAACATAG+AGG + Chr4:80093705-80093724 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + Chr4:80091351-80091370 None:intergenic 50.0%
CAGGCCTGAAAACAGTAGCT+GGG - Chr4:80093123-80093142 MsG0480023042.01.T01:intron 50.0%
CGCCTCATAGATCCCTTCAA+CGG + Chr4:80093587-80093606 None:intergenic 50.0%
CTGTGCCGTAAAGCTAGAAG+TGG + Chr4:80091956-80091975 None:intergenic 50.0%
GATTCACCTGTGCTAGGTCT+GGG - Chr4:80091059-80091078 MsG0480023042.01.T01:CDS 50.0%
GCAAGATCATCAGGAAGACC+AGG + Chr4:80093263-80093282 None:intergenic 50.0%
GCTCCGGAAAAGTCTTGGAA+TGG - Chr4:80093381-80093400 MsG0480023042.01.T01:intron 50.0%
GGAGAATATCGCTTCGGTGA+AGG + Chr4:80092112-80092131 None:intergenic 50.0%
GGTGGAAGAGATCCGTTGAA+GGG - Chr4:80093572-80093591 MsG0480023042.01.T01:intron 50.0%
GGTGGACGATTCATCCTACT+TGG + Chr4:80092067-80092086 None:intergenic 50.0%
GGTTCATGAAAACACCAGCG+AGG - Chr4:80091905-80091924 MsG0480023042.01.T01:intron 50.0%
GTCATGTGACGGTAAGGTCA+CGG - Chr4:80091373-80091392 MsG0480023042.01.T01:CDS 50.0%
GTGAAGAAGCCCAACAGCTT+GGG + Chr4:80092562-80092581 None:intergenic 50.0%
GTTCACTGGAGTCCAGGTAT+CGG + Chr4:80093914-80093933 None:intergenic 50.0%
GTTGCTGGTGGGGAATGTAA+AGG - Chr4:80093709-80093728 MsG0480023042.01.T01:intron 50.0%
TAATTGCTGCAAGCGGGGAA+CGG + Chr4:80092900-80092919 None:intergenic 50.0%
TAGCAAGTGGAGGGTAAGAG+AGG - Chr4:80089946-80089965 MsG0480023042.01.T01:three_prime_UTR 50.0%
TCAGGAAGACCAGGTAGCAA+AGG + Chr4:80093254-80093273 None:intergenic 50.0%
TCAGGCCTGAAAACAGTAGC+TGG - Chr4:80093122-80093141 MsG0480023042.01.T01:intron 50.0%
TCATGTGACGGTAAGGTCAC+GGG - Chr4:80091374-80091393 MsG0480023042.01.T01:CDS 50.0%
TCCATTGTTCACTGGAGTCC+AGG + Chr4:80093920-80093939 None:intergenic 50.0%
TGACGTTTCCGCAGCATATC+AGG + Chr4:80093653-80093672 None:intergenic 50.0%
TGATTCACCTGTGCTAGGTC+TGG - Chr4:80091058-80091077 MsG0480023042.01.T01:CDS 50.0%
TGCCGTAAAGCTAGAAGTGG+AGG + Chr4:80091953-80091972 None:intergenic 50.0%
TGGTGGAAGAGATCCGTTGA+AGG - Chr4:80093571-80093590 MsG0480023042.01.T01:intron 50.0%
TGTGAAGAAGCCCAACAGCT+TGG + Chr4:80092563-80092582 None:intergenic 50.0%
! AAGGTCACGGGTTCAAGTTC+TGG - Chr4:80091386-80091405 MsG0480023042.01.T01:CDS 50.0%
! ACAGAGCACCTGATATGCTG+CGG - Chr4:80093642-80093661 MsG0480023042.01.T01:intron 50.0%
! AGGTGTGGAACTGGGTATTG+TGG - Chr4:80092146-80092165 MsG0480023042.01.T01:intron 50.0%
! GTGTACCCCGAGTTGAACAT+AGG - Chr4:80093300-80093319 MsG0480023042.01.T01:intron 50.0%
! TTTGGCTGTGCCGTTCTTAG+TGG - Chr4:80093530-80093549 MsG0480023042.01.T01:intron 50.0%
!! CATGGTTTTTGAAGGGGCTC+GGG - Chr4:80093848-80093867 MsG0480023042.01.T01:intron 50.0%
!! CTCTAGAGTTCAAGCTCCAC+TGG - Chr4:80090252-80090271 MsG0480023042.01.T01:three_prime_UTR 50.0%
!! TGTTTCGCTCTAAGGCTCTG+TGG - Chr4:80094489-80094508 MsG0480023042.01.T01:five_prime_UTR 50.0%
AAGCCTAGAAGGTGAGCAGC+TGG + Chr4:80090727-80090746 None:intergenic 55.0%
ACCAGCGAGGCAGAAGAACA+CGG - Chr4:80091918-80091937 MsG0480023042.01.T01:intron 55.0%
AGAGGTAACCTTGGCGCAAC+TGG - Chr4:80091340-80091359 MsG0480023042.01.T01:CDS 55.0%
AGGCAGAAGAACACGGAAGC+TGG - Chr4:80091925-80091944 MsG0480023042.01.T01:intron 55.0%
AGTCCAGCTGCTCACCTTCT+AGG - Chr4:80090721-80090740 MsG0480023042.01.T01:three_prime_UTR 55.0%
ATATTCCAGGAACAGGCGGG+AGG + Chr4:80093495-80093514 None:intergenic 55.0%
CTCGGAGATGACCACAGCTA+TGG - Chr4:80093795-80093814 MsG0480023042.01.T01:intron 55.0%
CTGCCTCTATGTTGCTGGTG+GGG - Chr4:80093699-80093718 MsG0480023042.01.T01:intron 55.0%
GCGGGAGGGATTGCCATATT+TGG + Chr4:80093480-80093499 None:intergenic 55.0%
GGAAGACCAGGTAGCAAAGG+AGG + Chr4:80093251-80093270 None:intergenic 55.0%
GTTCAGCCTCCTTTGCTACC+TGG - Chr4:80093242-80093261 MsG0480023042.01.T01:intron 55.0%
TACCAATGGGAGGTCCCTCA+AGG - Chr4:80091727-80091746 MsG0480023042.01.T01:intron 55.0%
TATTCCAGGAACAGGCGGGA+GGG + Chr4:80093494-80093513 None:intergenic 55.0%
TGAAAACAGTAGCTGGGGCG+AGG - Chr4:80093129-80093148 MsG0480023042.01.T01:intron 55.0%
TTGCTGGAAAGGGTCCTGTC+AGG - Chr4:80094222-80094241 MsG0480023042.01.T01:intron 55.0%
! TCGCCCCAGCTACTGTTTTC+AGG + Chr4:80093130-80093149 None:intergenic 55.0%
AATGGGAGGTCCCTCAAGGC+TGG - Chr4:80091731-80091750 MsG0480023042.01.T01:intron 60.0%
ACTGAAGCTCCCGCATACGC+AGG + Chr4:80091482-80091501 None:intergenic 60.0%
AGCCTTGAGGGACCTCCCAT+TGG + Chr4:80091732-80091751 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - Chr4:80091486-80091505 MsG0480023042.01.T01:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + Chr4:80091481-80091500 None:intergenic 60.0%
TCCGTGTTCTTCTGCCTCGC+TGG + Chr4:80091922-80091941 None:intergenic 60.0%
TGGTCTACTATCGCAGGGCG+CGG - Chr4:80094263-80094282 MsG0480023042.01.T01:intron 60.0%
! GGGGCGAGGAAGTTTGTTCC+AGG - Chr4:80093143-80093162 MsG0480023042.01.T01:intron 60.0%
AGCTCCCGCATACGCAGGGT+CGG + Chr4:80091477-80091496 None:intergenic 65.0%
CAATCCCTCCCGCCTGTTCC+TGG - Chr4:80093487-80093506 MsG0480023042.01.T01:intron 65.0%
CCTTCCCGACCCTGCGTATG+CGG - Chr4:80091469-80091488 MsG0480023042.01.T01:CDS 65.0%
CGCATACGCAGGGTCGGGAA+GGG + Chr4:80091471-80091490 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr4:80091457-80091476 None:intergenic 65.0%
CTTCCCGACCCTGCGTATGC+GGG - Chr4:80091470-80091489 MsG0480023042.01.T01:CDS 65.0%
GCATACGCAGGGTCGGGAAG+GGG + Chr4:80091470-80091489 None:intergenic 65.0%
TCTACTATCGCAGGGCGCGG+TGG - Chr4:80094266-80094285 MsG0480023042.01.T01:intron 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - Chr4:80091487-80091506 MsG0480023042.01.T01:intron 65.0%
CCGCATACGCAGGGTCGGGA+AGG + Chr4:80091472-80091491 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+GGG + Chr4:80091476-80091495 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 80089753 80094833 80089753 ID=MsG0480023042.01;Name=MsG0480023042.01
Chr4 mRNA 80089753 80094833 80089753 ID=MsG0480023042.01.T01;Parent=MsG0480023042.01;Name=MsG0480023042.01.T01;_AED=0.29;_eAED=0.29;_QI=361|1|1|1|0|0.33|3|1028|259
Chr4 exon 80089753 80091497 80089753 ID=MsG0480023042.01.T01:exon:11184;Parent=MsG0480023042.01.T01
Chr4 exon 80094313 80094530 80094313 ID=MsG0480023042.01.T01:exon:11183;Parent=MsG0480023042.01.T01
Chr4 exon 80094628 80094833 80094628 ID=MsG0480023042.01.T01:exon:11182;Parent=MsG0480023042.01.T01
Chr4 five_prime_UTR 80094628 80094833 80094628 ID=MsG0480023042.01.T01:five_prime_utr;Parent=MsG0480023042.01.T01
Chr4 five_prime_UTR 80094376 80094530 80094376 ID=MsG0480023042.01.T01:five_prime_utr;Parent=MsG0480023042.01.T01
Chr4 CDS 80094313 80094375 80094313 ID=MsG0480023042.01.T01:cds;Parent=MsG0480023042.01.T01
Chr4 CDS 80090781 80091497 80090781 ID=MsG0480023042.01.T01:cds;Parent=MsG0480023042.01.T01
Chr4 three_prime_UTR 80089753 80090780 80089753 ID=MsG0480023042.01.T01:three_prime_utr;Parent=MsG0480023042.01.T01
Gene Sequence

>MsG0480023042.01.T01

ATGAATCAATTAGTTGAAAGTTCTGCTAATTCTCAAAGGGTCTCTAGAGTTCAAGCTCCACTGGTAGATTCTGTTTCATGCTATTGTAAAGTAGATTCAGGCCTGAAAACAGTAGCTGGGGCGAGGAAGTTTGTTCCAGGATCAAAGATATGCATCCAACCTGATATAAACCCGAATGCACACAGGAACAAAAACTCGCGTAAAGAGAAGACAAGAGTTCAGCCTCCTTTGCTACCTGGTCTTCCTGATGATCTTGCTATTGCTTGTCTAATTCGTGTACCCCGAGTTGAACATAGGAACTGCGTTTGGTTTGCAAGAGATGGTATCGCCTTCTGTCTGGAAATTTCTTTTATTCGCTCCGGAAAAGTCTTGGAATGGCAGAAGAATGGGTTTATGTCATCAAAAGAGACCGTGAGGGAAAAATTTCATTGCACGCTTTTGACCCTATCTACCAAATATGGCAATCCCTCCCGCCTGTTCCTGGAATATTCTGAAGCATTGGGATTTGGCTGTGCCGTTCTTAGTGGTTGCCACTTGTACTTGTTTGGTGGAAGAGATCCGTTGAAGGGATCTATGAGGCGTGTCATTTTCTACAACGCACGTACAAATAAATGGCACAGAGCACCTGATATGCTGCGGAAACGTCATCTTTTTGGTTCTTGCGTAATAATAACTGCCTCTATGTTGCTGGTGGGGAATGTAAAGGAATTCAAAGAACTCTTCGATCTGCTGAGGTTTACGACCCTAATCGGAACAGATGGAGCTTTATCTCGGAGATGA
Protein sequence

>MsG0480023042.01.T01

MNQLVESSANSQRVSRVQAPLVDSVSCYCKVDSGLKTVAGARKFVPGSKICIQPDINPNAHRNKNSRKEKTRVQPPLLPGLPDDLAIACLIRVPRVEHRNCVWFARDGIAFCLEISFIRSGKVLEWQKNGFMSSKETVREKFHCTLLTLSTKYGNPSRLFLEYSEALGFGCAVLSGCHLYLFGGRDPLKGSMRRVIFYNARTNKWHRAPDMLRKRHLFGSCVIITASMLLVGNVKEFKELFDLLRFTTLIGTDGALSRR*