AlfalfaGEDB | MsG0280011036.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011036.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011036.01.T01	AES67610.1	53.957	139	16	3	1	91	88	226	8.27E-34	130

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011036.01.T01	G7IHP7	53.957	139	16	3	1	91	88	226	3.95e-34	130

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001523.01	MsG0280011036.01	0.841500	4.576771e-58	6.738062e-55
MsG0180001615.01	MsG0280011036.01	0.821515	3.876455e-53	3.160334e-50
MsG0180002891.01	MsG0280011036.01	0.817121	3.885751e-52	2.805272e-49
MsG0180005338.01	MsG0280011036.01	0.860837	1.563109e-63	4.331507e-60
MsG0180005767.01	MsG0280011036.01	0.802293	6.009547e-49	2.932994e-46
MsG0180005898.01	MsG0280011036.01	0.812355	4.420757e-51	2.804643e-48
MsG0180006076.01	MsG0280011036.01	0.830325	3.130097e-55	3.286930e-52
MsG0180006183.01	MsG0280011036.01	-0.832019	1.199960e-55	1.324801e-52
MsG0280006319.01	MsG0280011036.01	0.825939	3.565039e-54	3.296354e-51
MsG0280010696.01	MsG0280011036.01	0.810969	8.848630e-51	5.410477e-48
MsG0280011020.01	MsG0280011036.01	0.842442	2.579723e-58	3.912360e-55
MsG0280011036.01	MsG0280011362.01	0.803127	4.043665e-49	2.015782e-46
MsG0280011036.01	MsG0380012931.01	0.875116	3.969931e-68	1.832288e-64
MsG0280011036.01	MsG0380014646.01	0.847942	8.403427e-60	1.517789e-56
MsG0280011036.01	MsG0380016065.01	0.809463	1.868879e-50	1.097988e-47
MsG0280011036.01	MsG0380016066.01	0.854223	1.420262e-61	3.149944e-58
MsG0280011036.01	MsG0380016151.01	0.815960	7.070553e-52	4.945014e-49
MsG0280011036.01	MsG0380016492.01	0.800444	1.437231e-48	6.693153e-46
MsG0280011036.01	MsG0380016861.01	0.804037	2.617630e-49	1.335862e-46
MsG0280011036.01	MsG0380016997.01	0.808856	2.521486e-50	1.457560e-47
MsG0280011036.01	MsG0380017353.01	0.810307	1.230250e-50	7.389881e-48
MsG0280011036.01	MsG0480020797.01	-0.818338	2.064612e-52	1.541271e-49
MsG0280011036.01	MsG0480021151.01	0.878761	2.161896e-69	1.142397e-65
MsG0280011036.01	MsG0480022002.01	0.812129	4.951037e-51	3.121856e-48
MsG0280011036.01	MsG0480022241.01	0.828234	1.007098e-54	9.950427e-52
MsG0280011036.01	MsG0480023042.01	0.816764	4.673586e-52	3.341314e-49
MsG0280011036.01	MsG0480023375.01	0.859961	2.878522e-63	7.740712e-60
MsG0280011036.01	MsG0480023386.01	0.840305	9.421949e-58	1.336448e-54
MsG0280011036.01	MsG0480023507.01	0.815095	1.101643e-51	7.523844e-49
MsG0280011036.01	MsG0580024201.01	0.806471	8.096690e-50	4.398373e-47
MsG0280011036.01	MsG0580024538.01	0.834152	3.535196e-56	4.158963e-53
MsG0280011036.01	MsG0580024763.01	0.812748	3.627369e-51	2.325263e-48
MsG0280011036.01	MsG0580024766.01	0.802079	6.651129e-49	3.228343e-46
MsG0280011036.01	MsG0580024768.01	0.806879	6.638696e-50	3.644330e-47
MsG0280011036.01	MsG0580028013.01	0.820323	7.286817e-53	5.747189e-50
MsG0280011036.01	MsG0580028397.01	0.823625	1.252381e-53	1.084106e-50
MsG0280011036.01	MsG0580028398.01	0.824724	6.913660e-54	6.175253e-51
MsG0280011036.01	MsG0580028403.01	0.829896	3.982466e-55	4.131086e-52
MsG0280011036.01	MsG0580030141.01	-0.810157	1.325293e-50	7.929838e-48
MsG0280011036.01	MsG0680035665.01	0.824187	9.244328e-54	8.129897e-51
MsG0280011036.01	MsG0780040154.01	0.809012	2.335167e-50	1.355469e-47
MsG0280011036.01	MsG0780040155.01	0.805297	1.428830e-49	7.531946e-47
MsG0280011036.01	MsG0780041002.01	0.840193	1.007899e-57	1.424855e-54
MsG0280011036.01	MsG0780041668.01	0.804191	2.431871e-49	1.245900e-46
MsG0280011036.01	MsG0780041807.01	0.804787	1.826972e-49	9.505375e-47
MsG0280011036.01	MsG0880042256.01	0.807691	4.465964e-50	2.503843e-47
MsG0280011036.01	MsG0880043021.01	0.804123	2.512428e-49	1.284977e-46
MsG0280011036.01	MsG0880043495.01	-0.848307	6.661410e-60	1.217339e-56
MsG0280011036.01	MsG0880044105.01	0.814192	1.745762e-51	1.163596e-48
MsG0280011036.01	MsG0880044317.01	0.809720	1.645841e-50	9.736225e-48
MsG0280011036.01	MsG0880044318.01	0.811372	7.234381e-51	4.470346e-48
MsG0280011036.01	MsG0880044453.01	0.808734	2.677794e-50	1.542870e-47
MsG0280011036.01	MsG0880045394.01	0.866331	3.082371e-65	1.035040e-61
MsG0280011036.01	MsG0880045725.01	-0.819388	1.192100e-52	9.160268e-50
MsG0280011036.01	MsG0880045761.01	0.854431	1.236644e-61	2.761126e-58
MsG0280011036.01	MsG0880046969.01	0.809532	1.805940e-50	1.063007e-47
MsG0280011036.01	MsG0880047090.01	-0.814093	1.836320e-51	1.220638e-48
MsG0280011036.01	MsG0880047660.01	0.841404	4.850878e-58	7.120625e-55
MsG0280007054.01	MsG0280011036.01	-0.808357	3.222752e-50	1.838891e-47
MsG0280007085.01	MsG0280011036.01	-0.808176	3.522764e-50	2.000498e-47
MsG0280008139.01	MsG0280011036.01	0.813362	2.659472e-51	1.733226e-48
MsG0280010253.01	MsG0280011036.01	0.808517	2.979278e-50	1.707005e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011036.01.T01	MTR_2g097230	53.957	139	16	3	1	91	88	226	1.00e-37	130
MsG0280011036.01.T01	MTR_4g064030	41.964	112	42	3	58	146	30	141	4.16e-19	78.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011036.01.T01	AT5G59400	44.056	143	26	2	1	91	96	236	9.89e-31	111
MsG0280011036.01.T01	AT5G59400	44.056	143	26	2	1	91	96	236	1.22e-29	109

Find 60 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGGTAGACAATGGGTTTA+TGG	0.211478	2:+78703673	MsG0280011036.01.T01:CDS
CTAACCTCTTCTCCACAATT+TGG	0.256151	2:-78702748	None:intergenic
AAAGAGCTTCAAGGGTTTCT+TGG	0.284671	2:-78701361	None:intergenic
CAGAACGGTTGTTTCTGATT+TGG	0.301210	2:-78701242	None:intergenic
CAGCAATCAACTTCAAGATT+TGG	0.317400	2:+78703655	MsG0280011036.01.T01:CDS
CATGGCACTCGGTTTGTCAT+AGG	0.339289	2:+78702540	MsG0280011036.01.T01:CDS
CCGACAGTTAAAACACTTCA+AGG	0.341879	2:+78702685	MsG0280011036.01.T01:intron
TTACAGCTCCCTTTGGCGTC+TGG	0.345446	2:-78703719	None:intergenic
TTGGTAGACAATGGGTTTAT+GGG	0.350926	2:+78703674	MsG0280011036.01.T01:CDS
GGTGAATACCATTATCTTCA+TGG	0.383957	2:+78702522	MsG0280011036.01.T01:CDS
CCTTGAAGCTCTTTATTCTC+AGG	0.389886	2:+78701370	MsG0280011036.01.T01:five_prime_UTR
AAGAGCTTCAAGGGTTTCTT+GGG	0.410172	2:-78701360	None:intergenic
CCTGAGAATAAAGAGCTTCA+AGG	0.416387	2:-78701370	None:intergenic
AGAAAATTTACAGCTCCCTT+TGG	0.418396	2:-78703726	None:intergenic
GAATGACTTGGCAGCACTAA+AGG	0.426467	2:+78702717	MsG0280011036.01.T01:CDS
ACCGAGTGCCATGAAGATAA+TGG	0.436674	2:-78702530	None:intergenic
TTACCTGAGGCAGAAGCAAC+CGG	0.444107	2:-78702567	None:intergenic
AGCAACAGCAGCACCGCTTT+AGG	0.444700	2:+78701196	MsG0280011036.01.T01:five_prime_UTR
TATCCGGTTGCTTCTGCCTC+AGG	0.446058	2:+78702564	MsG0280011036.01.T01:CDS
TTCAAGATTTGGTAGACAAT+GGG	0.459540	2:+78703666	MsG0280011036.01.T01:CDS
GACACAAAGCACATTTGTCT+TGG	0.460398	2:+78701082	MsG0280011036.01.T01:five_prime_UTR
TCGGTTTGTCATAGGATATC+CGG	0.464960	2:+78702548	MsG0280011036.01.T01:CDS
GAGGACTTAGTTGTGATGCT+TGG	0.477149	2:-78702492	None:intergenic
GGTAACAGTTGAAGCTTAAG+TGG	0.481788	2:+78701738	MsG0280011036.01.T01:intron
CTTCAAGATTTGGTAGACAA+TGG	0.486758	2:+78703665	MsG0280011036.01.T01:CDS
CAGTTGAAGCTTAAGTGGTA+TGG	0.493314	2:+78701743	MsG0280011036.01.T01:intron
CTGAGAATAAAGAGCTTCAA+GGG	0.499082	2:-78701369	None:intergenic
ACCATTATCTTCATGGCACT+CGG	0.500659	2:+78702529	MsG0280011036.01.T01:CDS
GCGTAAATCCAGACGCCAAA+GGG	0.509490	2:+78703711	MsG0280011036.01.T01:CDS
AATGACTTGGCAGCACTAAA+GGG	0.512532	2:+78702718	MsG0280011036.01.T01:CDS
GGTCCATCTTGTATATATGT+TGG	0.512587	2:+78701320	MsG0280011036.01.T01:five_prime_UTR
TTAAAACACTTCAAGGCTTG+TGG	0.533051	2:+78702692	MsG0280011036.01.T01:CDS
AGGATACTTCACAACTGACT+TGG	0.542875	2:-78701768	None:intergenic
TCTTGGGTGGCAGTTTGAAG+AGG	0.543205	2:-78701344	None:intergenic
AGGCTTGTGGAGGAATGACT+TGG	0.547292	2:+78702705	MsG0280011036.01.T01:CDS
AACACACATATGAAACATGT+TGG	0.548063	2:+78701165	MsG0280011036.01.T01:five_prime_UTR
ACCTGCGACGACCGTCCTCA+TGG	0.548202	2:+78701299	MsG0280011036.01.T01:five_prime_UTR
AACATGTCATCAACTATCAA+AGG	0.550328	2:-78701618	None:intergenic
GCAGCACCGCTTTAGGTGGA+TGG	0.553063	2:+78701203	MsG0280011036.01.T01:five_prime_UTR
GGACCAACATATATACAAGA+TGG	0.557422	2:-78701323	None:intergenic
AGCTTCAAGGGTTTCTTGGG+TGG	0.559365	2:-78701357	None:intergenic
ATGGTATTCACCATGAAAAG+AGG	0.559608	2:-78702511	None:intergenic
ATGTCCAAATTGTGGAGAAG+AGG	0.561187	2:+78702744	MsG0280011036.01.T01:CDS
AAGGGTTCATGTCCAAATTG+TGG	0.563160	2:+78702736	MsG0280011036.01.T01:CDS
CACCGTCCATCCACCTAAAG+CGG	0.577414	2:-78701209	None:intergenic
ACCATGAGGACGGTCGTCGC+AGG	0.579798	2:-78701300	None:intergenic
CACCGCTTTAGGTGGATGGA+CGG	0.580229	2:+78701207	MsG0280011036.01.T01:five_prime_UTR
TGCGTAAATCCAGACGCCAA+AGG	0.585411	2:+78703710	MsG0280011036.01.T01:CDS
AAACACTTCAAGGCTTGTGG+AGG	0.598739	2:+78702695	MsG0280011036.01.T01:CDS
AACAGCAGCACCGCTTTAGG+TGG	0.608229	2:+78701199	MsG0280011036.01.T01:five_prime_UTR
ATCCTCGTTGCAGTATCAGA+AGG	0.615303	2:+78701786	MsG0280011036.01.T01:CDS
AATCACCTCAGCATCAGCAT+AGG	0.620614	2:-78701816	None:intergenic
TGACATGTTTGATAGAGTAG+AGG	0.624434	2:+78701632	MsG0280011036.01.T01:exon
GCAAGGGATGCATATTACAA+AGG	0.629849	2:+78701591	MsG0280011036.01.T01:five_prime_UTR
GGCGTCTGGATTTACGCACA+AGG	0.641633	2:-78703705	None:intergenic
TACAAGATGGACCATGAGGA+CGG	0.641757	2:-78701310	None:intergenic
ATCAACCTATGCTGATGCTG+AGG	0.651620	2:+78701811	MsG0280011036.01.T01:CDS
GAGAAGGAAGAGAAACAGAA+CGG	0.663425	2:-78701257	None:intergenic
TATATACAAGATGGACCATG+AGG	0.716840	2:-78701314	None:intergenic
TGCCTTCTGATACTGCAACG+AGG	0.764708	2:-78701788	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAAAGTTAAAATTTGTA+AGG	-	Chr2:78702624-78702643	None:intergenic	10.0%
!!	TAATAATATGTGAAATTAAT+TGG	-	Chr2:78703557-78703576	None:intergenic	10.0%
!!!	ATTTTAATAAAACTATTTTC+AGG	-	Chr2:78702085-78702104	None:intergenic	10.0%
!!!	GAAAATAGTTTTATTAAAAT+TGG	+	Chr2:78702085-78702104	MsG0280011036.01.T01:intron	10.0%
!!	ATCTTATGTTATTCATATTA+TGG	+	Chr2:78701717-78701736	MsG0280011036.01.T01:intron	15.0%
!!	TAATAAATATTACATTCATC+TGG	+	Chr2:78702232-78702251	MsG0280011036.01.T01:intron	15.0%
!!	TGTACATAATATTAATTGAA+GGG	+	Chr2:78703383-78703402	MsG0280011036.01.T01:intron	15.0%
!!!	ATTGAGAATTATTTTAAACA+TGG	+	Chr2:78701547-78701566	MsG0280011036.01.T01:intron	15.0%
!!!	TATCAAAATGCATTTAATTT+AGG	+	Chr2:78702454-78702473	MsG0280011036.01.T01:intron	15.0%
!!!	TCATTTTGAAACAATTTTTT+TGG	+	Chr2:78703456-78703475	MsG0280011036.01.T01:intron	15.0%
!!!	TTTAATTTAGGATTATCATA+TGG	+	Chr2:78702466-78702485	MsG0280011036.01.T01:intron	15.0%
!!!	TTTTATTAAAATTGGTTTTG+CGG	+	Chr2:78702093-78702112	MsG0280011036.01.T01:intron	15.0%
!!	AAATTATCCTAATCAACTAT+TGG	+	Chr2:78703318-78703337	MsG0280011036.01.T01:intron	20.0%
!!	AATAGTTGATTAGGATAATT+TGG	-	Chr2:78703319-78703338	None:intergenic	20.0%
!!	GAATAACATAAGATTAAGAT+CGG	-	Chr2:78701711-78701730	None:intergenic	20.0%
!!	GTGTACATAATATTAATTGA+AGG	+	Chr2:78703382-78703401	MsG0280011036.01.T01:intron	20.0%
!!!	GTTGTTTGTTTTATTGAAAA+AGG	+	Chr2:78702908-78702927	MsG0280011036.01.T01:intron	20.0%
!	ACTACCAAATGCAAAAAATA+AGG	-	Chr2:78702391-78702410	None:intergenic	25.0%
!	ATAATGCAAAGAATGCATAT+TGG	+	Chr2:78701985-78702004	MsG0280011036.01.T01:intron	25.0%
!	TAAGTATAAGCAACTGAAAT+TGG	-	Chr2:78701908-78701927	None:intergenic	25.0%
!	TAATGCAAAGAATGCATATT+GGG	+	Chr2:78701986-78702005	MsG0280011036.01.T01:intron	25.0%
!	TATGAAAGACTACAAAGTTT+GGG	-	Chr2:78702782-78702801	None:intergenic	25.0%
!	TTATGTTATTACCTCAACTT+CGG	-	Chr2:78703201-78703220	None:intergenic	25.0%
!!	TGGTGAATTTTCATCAATAA+GGG	-	Chr2:78701888-78701907	None:intergenic	25.0%
!!	TTGGTGAATTTTCATCAATA+AGG	-	Chr2:78701889-78701908	None:intergenic	25.0%
!!!	ATACTTAAGTTTTAGTTGCA+TGG	+	Chr2:78701921-78701940	MsG0280011036.01.T01:intron	25.0%
!!!	ATTGTTTTACTTCTTGCAAA+AGG	+	Chr2:78703511-78703530	MsG0280011036.01.T01:intron	25.0%
!!!	GAATGTTTTTGTTTTCGAAA+AGG	+	Chr2:78702144-78702163	MsG0280011036.01.T01:intron	25.0%
!!!	GAATTATTTTAAACATGGCA+TGG	+	Chr2:78701552-78701571	MsG0280011036.01.T01:intron	25.0%
!!!	TGTGACTATGATTTTTCAAT+AGG	+	Chr2:78703748-78703767	MsG0280011036.01.T01:CDS	25.0%
!!!	TTCAAAATGAATGTCACTTT+CGG	-	Chr2:78703446-78703465	None:intergenic	25.0%
	AAAAGGCAGTTCATAACATT+AGG	+	Chr2:78703528-78703547	MsG0280011036.01.T01:intron	30.0%
	AACACACATATGAAACATGT+TGG	+	Chr2:78701165-78701184	MsG0280011036.01.T01:five_prime_UTR	30.0%
	AACATGTCATCAACTATCAA+AGG	-	Chr2:78701621-78701640	None:intergenic	30.0%
	AATGCAAAGAATGCATATTG+GGG	+	Chr2:78701987-78702006	MsG0280011036.01.T01:intron	30.0%
	ACGCTTATGCTTAATTAAGT+TGG	+	Chr2:78701474-78701493	MsG0280011036.01.T01:intron	30.0%
	ATATGAAAAGTAGCAGCAAA+AGG	-	Chr2:78702597-78702616	None:intergenic	30.0%
	ATATTGAATGATGTGGATGT+AGG	+	Chr2:78702323-78702342	MsG0280011036.01.T01:intron	30.0%
	ATGAAAGACTACAAAGTTTG+GGG	-	Chr2:78702781-78702800	None:intergenic	30.0%
	CAACAAACCAATAGTTGATT+AGG	-	Chr2:78703328-78703347	None:intergenic	30.0%
	CAAGAATAGAGAAAAGAGAA+GGG	-	Chr2:78702289-78702308	None:intergenic	30.0%
	CGTCTTAATATTGAATGATG+TGG	+	Chr2:78702316-78702335	MsG0280011036.01.T01:intron	30.0%
	CTATGAAAGACTACAAAGTT+TGG	-	Chr2:78702783-78702802	None:intergenic	30.0%
	CTTTGACTAATGATCTTGTT+TGG	+	Chr2:78702824-78702843	MsG0280011036.01.T01:intron	30.0%
	GCATTCTTTGCATTATTAAG+AGG	-	Chr2:78701981-78702000	None:intergenic	30.0%
	TATTGAATGATGTGGATGTA+GGG	+	Chr2:78702324-78702343	MsG0280011036.01.T01:intron	30.0%
	TTAAAATTGTCTGAGTGAGT+TGG	+	Chr2:78703071-78703090	MsG0280011036.01.T01:intron	30.0%
	TTCTTACAAATGCAAATACC+TGG	-	Chr2:78703109-78703128	None:intergenic	30.0%
	TTGCTTATCGAATAAGTGTT+CGG	-	Chr2:78702862-78702881	None:intergenic	30.0%
!	AAGAAGTTAAGAAGCATATG+TGG	-	Chr2:78701679-78701698	None:intergenic	30.0%
!	TTCAAGATTTGGTAGACAAT+GGG	+	Chr2:78703666-78703685	MsG0280011036.01.T01:CDS	30.0%
!!	AAGCGACACTCATTTTTAAA+CGG	-	Chr2:78703236-78703255	None:intergenic	30.0%
!!!	TGGACCTTATTTTTTGCATT+TGG	+	Chr2:78702384-78702403	MsG0280011036.01.T01:intron	30.0%
!!!	TGTTTTAACTGTCGGAAAAA+AGG	-	Chr2:78702680-78702699	None:intergenic	30.0%
!!!	TTTTCAGGTCTAATCAATGT+AGG	-	Chr2:78702070-78702089	None:intergenic	30.0%
	AATGATGTTGGATCTTCATG+TGG	+	Chr2:78702012-78702031	MsG0280011036.01.T01:intron	35.0%
	AGAAAAGAGAAGGGAAAAAG+GGG	-	Chr2:78702280-78702299	None:intergenic	35.0%
	AGAAAATTTACAGCTCCCTT+TGG	-	Chr2:78703729-78703748	None:intergenic	35.0%
	AGAGAAAAGAGAAGGGAAAA+AGG	-	Chr2:78702282-78702301	None:intergenic	35.0%
	ATGCAAATACCTGGAAGATA+AGG	-	Chr2:78703100-78703119	None:intergenic	35.0%
	ATGGTATTCACCATGAAAAG+AGG	-	Chr2:78702514-78702533	None:intergenic	35.0%
	CAAAGAAGCCAAAGAAGTTA+AGG	-	Chr2:78702809-78702828	None:intergenic	35.0%
	CAGCAATCAACTTCAAGATT+TGG	+	Chr2:78703655-78703674	MsG0280011036.01.T01:CDS	35.0%
	CATAGTCTCCTTAACTTCTT+TGG	+	Chr2:78702798-78702817	MsG0280011036.01.T01:intron	35.0%
	CCAAGAATAGAGAAAAGAGA+AGG	-	Chr2:78702290-78702309	None:intergenic	35.0%
	CTGAGAATAAAGAGCTTCAA+GGG	-	Chr2:78701372-78701391	None:intergenic	35.0%
	GAGAAAAGAGAAGGGAAAAA+GGG	-	Chr2:78702281-78702300	None:intergenic	35.0%
	GGACCAACATATATACAAGA+TGG	-	Chr2:78701326-78701345	None:intergenic	35.0%
	GGTCCATCTTGTATATATGT+TGG	+	Chr2:78701320-78701339	MsG0280011036.01.T01:five_prime_UTR	35.0%
	GGTGAATACCATTATCTTCA+TGG	+	Chr2:78702522-78702541	MsG0280011036.01.T01:CDS	35.0%
	TATATACAAGATGGACCATG+AGG	-	Chr2:78701317-78701336	None:intergenic	35.0%
	TATGACAGTTAGCAATCTAG+AGG	+	Chr2:78702966-78702985	MsG0280011036.01.T01:intron	35.0%
	TGAAAGACTACAAAGTTTGG+GGG	-	Chr2:78702780-78702799	None:intergenic	35.0%
	TGACATGTTTGATAGAGTAG+AGG	+	Chr2:78701632-78701651	MsG0280011036.01.T01:exon	35.0%
	TGATCTTTGCTAATAGGCAA+GGG	+	Chr2:78701575-78701594	MsG0280011036.01.T01:intron	35.0%
	TGCATTTGTAAGAACAGACA+AGG	+	Chr2:78703115-78703134	MsG0280011036.01.T01:intron	35.0%
	TTAAAACACTTCAAGGCTTG+TGG	+	Chr2:78702692-78702711	MsG0280011036.01.T01:CDS	35.0%
	TTCCTTAATCTGTGTGCAAT+TGG	-	Chr2:78703262-78703281	None:intergenic	35.0%
!	AAGAAGCATATGTGGTGAAT+TGG	-	Chr2:78701671-78701690	None:intergenic	35.0%
!	ACAACTAAGTCCTCTTTTCA+TGG	+	Chr2:78702501-78702520	MsG0280011036.01.T01:CDS	35.0%
!	AGAAGCATATGTGGTGAATT+GGG	-	Chr2:78701670-78701689	None:intergenic	35.0%
!	AGCAAAAGGATTTTTACCTG+AGG	-	Chr2:78702583-78702602	None:intergenic	35.0%
!	AGTTGATGCTGCAAAAACAT+TGG	-	Chr2:78702429-78702448	None:intergenic	35.0%
!	CCTTCTCTTTTCTCTATTCT+TGG	+	Chr2:78702287-78702306	MsG0280011036.01.T01:intron	35.0%
!	CTTCAAGATTTGGTAGACAA+TGG	+	Chr2:78703665-78703684	MsG0280011036.01.T01:CDS	35.0%
!	TCTCTTCCTTCTCTCTTTTT+CGG	+	Chr2:78701267-78701286	MsG0280011036.01.T01:five_prime_UTR	35.0%
!	TTCATCTGGTTAGAGTGTTA+AGG	+	Chr2:78702246-78702265	MsG0280011036.01.T01:intron	35.0%
!	TTGGTAGACAATGGGTTTAT+GGG	+	Chr2:78703674-78703693	MsG0280011036.01.T01:CDS	35.0%
!	TTTGGTAGACAATGGGTTTA+TGG	+	Chr2:78703673-78703692	MsG0280011036.01.T01:CDS	35.0%
!!	AAAGCGACACTCTTTTGAAA+CGG	+	Chr2:78703481-78703500	MsG0280011036.01.T01:intron	35.0%
!!	ATGTTTTTGCAGCATCAACT+TGG	+	Chr2:78702429-78702448	MsG0280011036.01.T01:intron	35.0%
!!	GACACTCATTTTTAAACGGA+GGG	-	Chr2:78703232-78703251	None:intergenic	35.0%
!!!	CCTTGAAGTGTTTTAACTGT+CGG	-	Chr2:78702688-78702707	None:intergenic	35.0%
	AAAGAGCTTCAAGGGTTTCT+TGG	-	Chr2:78701364-78701383	None:intergenic	40.0%
	AAGAGCTTCAAGGGTTTCTT+GGG	-	Chr2:78701363-78701382	None:intergenic	40.0%
	AAGCATATGTGGTGAATTGG+GGG	-	Chr2:78701668-78701687	None:intergenic	40.0%
	AAGGGTTCATGTCCAAATTG+TGG	+	Chr2:78702736-78702755	MsG0280011036.01.T01:CDS	40.0%
	ACCATTATCTTCATGGCACT+CGG	+	Chr2:78702529-78702548	MsG0280011036.01.T01:CDS	40.0%
	AGAGATCCGAAAAAGAGAGA+AGG	-	Chr2:78701276-78701295	None:intergenic	40.0%
	AGCCAATTGCACACAGATTA+AGG	+	Chr2:78703257-78703276	MsG0280011036.01.T01:intron	40.0%
	AGGATACTTCACAACTGACT+TGG	-	Chr2:78701771-78701790	None:intergenic	40.0%
	AGTTGGATTCCTTATCTTCC+AGG	+	Chr2:78703088-78703107	MsG0280011036.01.T01:intron	40.0%
	ATCAATAAGGGTGATAGCCA+AGG	-	Chr2:78701876-78701895	None:intergenic	40.0%
	ATGTCCAAATTGTGGAGAAG+AGG	+	Chr2:78702744-78702763	MsG0280011036.01.T01:CDS	40.0%
	CAGTTGAAGCTTAAGTGGTA+TGG	+	Chr2:78701743-78701762	MsG0280011036.01.T01:intron	40.0%
	CATATTGGGGAGAATGATGT+TGG	+	Chr2:78702000-78702019	MsG0280011036.01.T01:intron	40.0%
	CCAATAAGCATTCACACACA+TGG	-	Chr2:78703169-78703188	None:intergenic	40.0%
	CCATGTGTGTGAATGCTTAT+TGG	+	Chr2:78703166-78703185	MsG0280011036.01.T01:intron	40.0%
	CCGACAGTTAAAACACTTCA+AGG	+	Chr2:78702685-78702704	MsG0280011036.01.T01:intron	40.0%
	CCTGAGAATAAAGAGCTTCA+AGG	-	Chr2:78701373-78701392	None:intergenic	40.0%
	CCTTGAAGCTCTTTATTCTC+AGG	+	Chr2:78701370-78701389	MsG0280011036.01.T01:five_prime_UTR	40.0%
	CTAACCTCTTCTCCACAATT+TGG	-	Chr2:78702751-78702770	None:intergenic	40.0%
	GAAGCATATGTGGTGAATTG+GGG	-	Chr2:78701669-78701688	None:intergenic	40.0%
	GACACAAAGCACATTTGTCT+TGG	+	Chr2:78701082-78701101	MsG0280011036.01.T01:five_prime_UTR	40.0%
	GAGAAGGAAGAGAAACAGAA+CGG	-	Chr2:78701260-78701279	None:intergenic	40.0%
	GCAAGGGATGCATATTACAA+AGG	+	Chr2:78701591-78701610	MsG0280011036.01.T01:five_prime_UTR	40.0%
	GCATGGTGATCTTTGCTAAT+AGG	+	Chr2:78701569-78701588	MsG0280011036.01.T01:intron	40.0%
	GGTAACAGTTGAAGCTTAAG+TGG	+	Chr2:78701738-78701757	MsG0280011036.01.T01:intron	40.0%
	GTGATCTTTGCTAATAGGCA+AGG	+	Chr2:78701574-78701593	MsG0280011036.01.T01:intron	40.0%
!	AATGACTTGGCAGCACTAAA+GGG	+	Chr2:78702718-78702737	MsG0280011036.01.T01:CDS	40.0%
!	TCGGTTTGTCATAGGATATC+CGG	+	Chr2:78702548-78702567	MsG0280011036.01.T01:CDS	40.0%
!	TGCATTTGGTAGTTCAGCAA+TGG	+	Chr2:78702398-78702417	MsG0280011036.01.T01:intron	40.0%
!	TTGGTAGTTCAGCAATGGTT+GGG	+	Chr2:78702403-78702422	MsG0280011036.01.T01:intron	40.0%
!	TTTGGTAGTTCAGCAATGGT+TGG	+	Chr2:78702402-78702421	MsG0280011036.01.T01:intron	40.0%
!	TTTTTACATTAGCGAGTGCG+TGG	+	Chr2:78702364-78702383	MsG0280011036.01.T01:intron	40.0%
!!	CAGAACGGTTGTTTCTGATT+TGG	-	Chr2:78701245-78701264	None:intergenic	40.0%
!!	CGACACTCATTTTTAAACGG+AGG	-	Chr2:78703233-78703252	None:intergenic	40.0%
	AAACACTTCAAGGCTTGTGG+AGG	+	Chr2:78702695-78702714	MsG0280011036.01.T01:CDS	45.0%
	AAGAGAAGGGAAAAAGGGGT+AGG	-	Chr2:78702276-78702295	None:intergenic	45.0%
	AATCACCTCAGCATCAGCAT+AGG	-	Chr2:78701819-78701838	None:intergenic	45.0%
	ACACATGGCACTTTGCTCTA+TGG	-	Chr2:78703154-78703173	None:intergenic	45.0%
	ACATGGCACTTTGCTCTATG+GGG	-	Chr2:78703152-78703171	None:intergenic	45.0%
	ACCGAGTGCCATGAAGATAA+TGG	-	Chr2:78702533-78702552	None:intergenic	45.0%
	ACTTCTTCTTTGCTCTGCCT+TGG	+	Chr2:78701856-78701875	MsG0280011036.01.T01:intron	45.0%
	AGAGAAGGGAAAAAGGGGTA+GGG	-	Chr2:78702275-78702294	None:intergenic	45.0%
	ATCAACCTATGCTGATGCTG+AGG	+	Chr2:78701811-78701830	MsG0280011036.01.T01:CDS	45.0%
	ATCCTCGTTGCAGTATCAGA+AGG	+	Chr2:78701786-78701805	MsG0280011036.01.T01:CDS	45.0%
	CACATGGCACTTTGCTCTAT+GGG	-	Chr2:78703153-78703172	None:intergenic	45.0%
	GAGGACTTAGTTGTGATGCT+TGG	-	Chr2:78702495-78702514	None:intergenic	45.0%
	TACAAGATGGACCATGAGGA+CGG	-	Chr2:78701313-78701332	None:intergenic	45.0%
!	GAATGACTTGGCAGCACTAA+AGG	+	Chr2:78702717-78702736	MsG0280011036.01.T01:CDS	45.0%
!!	TGGTTTTGCGGCGTTGAATT+AGG	+	Chr2:78702105-78702124	MsG0280011036.01.T01:intron	45.0%
!!!	CGACACTCTTTTGAAACGGA+GGG	+	Chr2:78703485-78703504	MsG0280011036.01.T01:intron	45.0%
	AGCTTCAAGGGTTTCTTGGG+TGG	-	Chr2:78701360-78701379	None:intergenic	50.0%
	AGGCTTGTGGAGGAATGACT+TGG	+	Chr2:78702705-78702724	MsG0280011036.01.T01:CDS	50.0%
	GAATGATGTGGATGTAGGGC+AGG	+	Chr2:78702328-78702347	MsG0280011036.01.T01:intron	50.0%
	GAGAAGGGAAAAAGGGGTAG+GGG	-	Chr2:78702274-78702293	None:intergenic	50.0%
	GCGTAAATCCAGACGCCAAA+GGG	+	Chr2:78703711-78703730	MsG0280011036.01.T01:CDS	50.0%
	GGAATTTCGCACCGAAGTTG+AGG	+	Chr2:78703187-78703206	MsG0280011036.01.T01:intron	50.0%
	TCTTGGGTGGCAGTTTGAAG+AGG	-	Chr2:78701347-78701366	None:intergenic	50.0%
	TGCCTTCTGATACTGCAACG+AGG	-	Chr2:78701791-78701810	None:intergenic	50.0%
	TGCGTAAATCCAGACGCCAA+AGG	+	Chr2:78703710-78703729	MsG0280011036.01.T01:CDS	50.0%
	TTACCTGAGGCAGAAGCAAC+CGG	-	Chr2:78702570-78702589	None:intergenic	50.0%
!	CATGGCACTCGGTTTGTCAT+AGG	+	Chr2:78702540-78702559	MsG0280011036.01.T01:CDS	50.0%
!!!	GCGACACTCTTTTGAAACGG+AGG	+	Chr2:78703484-78703503	MsG0280011036.01.T01:intron	50.0%
	AGCAACAGCAGCACCGCTTT+AGG	+	Chr2:78701196-78701215	MsG0280011036.01.T01:five_prime_UTR	55.0%
	CACCGTCCATCCACCTAAAG+CGG	-	Chr2:78701212-78701231	None:intergenic	55.0%
	GGCGTCTGGATTTACGCACA+AGG	-	Chr2:78703708-78703727	None:intergenic	55.0%
	GTAGGGCAGGAAGATCTGTC+TGG	+	Chr2:78702341-78702360	MsG0280011036.01.T01:intron	55.0%
	TATCCGGTTGCTTCTGCCTC+AGG	+	Chr2:78702564-78702583	MsG0280011036.01.T01:CDS	55.0%
	TTACAGCTCCCTTTGGCGTC+TGG	-	Chr2:78703722-78703741	None:intergenic	55.0%
!	AACAGCAGCACCGCTTTAGG+TGG	+	Chr2:78701199-78701218	MsG0280011036.01.T01:five_prime_UTR	55.0%
!	CACCGCTTTAGGTGGATGGA+CGG	+	Chr2:78701207-78701226	MsG0280011036.01.T01:five_prime_UTR	55.0%
!	GCAGCACCGCTTTAGGTGGA+TGG	+	Chr2:78701203-78701222	MsG0280011036.01.T01:five_prime_UTR	60.0%
	ACCATGAGGACGGTCGTCGC+AGG	-	Chr2:78701303-78701322	None:intergenic	65.0%
	ACCTGCGACGACCGTCCTCA+TGG	+	Chr2:78701299-78701318	MsG0280011036.01.T01:five_prime_UTR	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	78701082	78703769	78701082	ID=MsG0280011036.01;Name=MsG0280011036.01
Chr2	mRNA	78701082	78703769	78701082	ID=MsG0280011036.01.T01;Parent=MsG0280011036.01;Name=MsG0280011036.01.T01;_AED=0.34;_eAED=0.48;_QI=355\|0.6\|0.66\|1\|0\|0\|6\|0\|148
Chr2	exon	78701082	78701391	78701082	ID=MsG0280011036.01.T01:exon:21301;Parent=MsG0280011036.01.T01
Chr2	exon	78701591	78701653	78701591	ID=MsG0280011036.01.T01:exon:21302;Parent=MsG0280011036.01.T01
Chr2	exon	78701746	78701832	78701746	ID=MsG0280011036.01.T01:exon:21303;Parent=MsG0280011036.01.T01
Chr2	exon	78702492	78702585	78702492	ID=MsG0280011036.01.T01:exon:21304;Parent=MsG0280011036.01.T01
Chr2	exon	78702692	78702765	78702692	ID=MsG0280011036.01.T01:exon:21305;Parent=MsG0280011036.01.T01
Chr2	exon	78703596	78703769	78703596	ID=MsG0280011036.01.T01:exon:21306;Parent=MsG0280011036.01.T01
Chr2	five_prime_UTR	78701082	78701391	78701082	ID=MsG0280011036.01.T01:five_prime_utr;Parent=MsG0280011036.01.T01
Chr2	five_prime_UTR	78701591	78701635	78701591	ID=MsG0280011036.01.T01:five_prime_utr;Parent=MsG0280011036.01.T01
Chr2	CDS	78701636	78701653	78701636	ID=MsG0280011036.01.T01:cds;Parent=MsG0280011036.01.T01
Chr2	CDS	78701746	78701832	78701746	ID=MsG0280011036.01.T01:cds;Parent=MsG0280011036.01.T01
Chr2	CDS	78702492	78702585	78702492	ID=MsG0280011036.01.T01:cds;Parent=MsG0280011036.01.T01
Chr2	CDS	78702692	78702765	78702692	ID=MsG0280011036.01.T01:cds;Parent=MsG0280011036.01.T01
Chr2	CDS	78703596	78703769	78703596	ID=MsG0280011036.01.T01:cds;Parent=MsG0280011036.01.T01

Gene Sequence

>MsG0280011036.01.T01

ATGTTTGATAGAGTAGAGTTGAAGCTTAAGTGGTATGGTTCCAAGTCAGTTGTGAAGTATCCTCGTTGCAGTATCAGAAGGCAATCAACCTATGCTGATGCTGAGCCAAGCATCACAACTAAGTCCTCTTTTCATGGTGAATACCATTATCTTCATGGCACTCGGTTTGTCATAGGATATCCGGTTGCTTCTGCCTCAGTTAAAACACTTCAAGGCTTGTGGAGGAATGACTTGGCAGCACTAAAGGGTTCATGTCCAAATTGTGGAGAAGAGTATAGATCAAGAGCTGCTAGTATTTTTCTCTTTTGCATGACACATGATGTTATCATTTGCAGCAATCAACTTCAAGATTTGGTAGACAATGGGTTTATGGGCGTATTTACCTTGTGCGTAAATCCAGACGCCAAAGGGAGCTGTAAATTTTCTGTGACTATGATTTTTCAATAG

Protein sequence

>MsG0280011036.01.T01

MFDRVELKLKWYGSKSVVKYPRCSIRRQSTYADAEPSITTKSSFHGEYHYLHGTRFVIGYPVASASVKTLQGLWRNDLAALKGSCPNCGEEYRSRAASIFLFCMTHDVIICSNQLQDLVDNGFMGVFTLCVNPDAKGSCKFSVTMIFQ*