AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021151.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021151.01.T01 MTR_4g067320 99.167 240 2 0 1 240 1 240 9.49e-179 490
MsG0480021151.01.T01 MTR_4g067320 98.750 240 2 1 1 240 1 239 6.13e-176 483
MsG0480021151.01.T01 MTR_2g099010 69.262 244 70 3 1 240 1 243 8.82e-117 333
MsG0480021151.01.T01 MTR_2g099010 68.852 244 70 4 1 240 1 242 3.15e-114 327
MsG0480021151.01.T01 MTR_2g099010 61.702 188 67 3 57 240 31 217 1.77e-72 220
MsG0480021151.01.T01 MTR_2g073370 60.550 109 43 0 1 109 1 109 1.05e-42 146
MsG0480021151.01.T01 MTR_1g023260 34.799 273 133 8 1 240 1 261 1.07e-37 133
MsG0480021151.01.T01 MTR_3g117320 54.717 106 47 1 1 105 1 106 1.85e-35 126
MsG0480021151.01.T01 MTR_1g023260 57.407 108 39 2 1 104 1 105 1.94e-35 125
MsG0480021151.01.T01 MTR_4g071200 49.558 113 56 1 1 112 1 113 2.26e-35 125
MsG0480021151.01.T01 MTR_3g113070 52.830 106 48 1 1 104 1 106 1.48e-32 118
MsG0480021151.01.T01 MTR_5g021580 42.537 134 71 4 1 131 1 131 5.64e-25 97.8
MsG0480021151.01.T01 MTR_5g021580 42.537 134 71 4 1 131 1 131 6.10e-25 97.8
MsG0480021151.01.T01 MTR_7g018170 43.478 92 43 1 5 96 26 108 9.35e-19 84.7
MsG0480021151.01.T01 MTR_3g105710 43.750 96 45 1 5 100 6 92 1.91e-18 82.4
MsG0480021151.01.T01 MTR_1g013450 42.391 92 44 1 5 96 6 88 2.54e-18 82.4
MsG0480021151.01.T01 MTR_4g128930 39.130 92 47 1 5 96 22 104 1.23e-16 78.6
MsG0480021151.01.T01 MTR_7g108150 41.837 98 47 2 5 102 20 107 9.44e-16 75.9
MsG0480021151.01.T01 MTR_5g069480 35.417 96 53 1 1 96 1 87 4.76e-14 71.2
MsG0480021151.01.T01 MTR_5g069480 35.417 96 53 1 1 96 1 87 5.40e-14 70.1
MsG0480021151.01.T01 MTR_3g082630 38.542 96 49 2 1 96 1 86 6.65e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021151.01.T01 AT1G06040 62.500 248 85 4 1 240 1 248 9.03e-105 303
MsG0480021151.01.T01 AT2G31380 59.836 244 88 7 1 240 1 238 3.20e-92 271
MsG0480021151.01.T01 AT1G06040 66.071 168 51 3 1 162 1 168 2.75e-70 213
MsG0480021151.01.T01 AT1G78600 56.800 125 52 1 1 125 1 123 5.74e-42 145
MsG0480021151.01.T01 AT1G78600 56.800 125 52 1 1 125 1 123 1.23e-41 144
MsG0480021151.01.T01 AT4G10240 47.619 147 64 4 1 141 1 140 2.44e-36 126
MsG0480021151.01.T01 AT1G75540 56.522 115 47 2 1 112 1 115 5.62e-36 130
MsG0480021151.01.T01 AT4G39070 45.890 146 76 2 1 145 1 144 8.44e-34 122
MsG0480021151.01.T01 AT2G21320 50.000 104 49 2 1 104 1 101 4.36e-25 97.8
MsG0480021151.01.T01 AT4G38960 42.424 132 68 3 1 127 1 129 6.52e-25 97.4
MsG0480021151.01.T01 AT4G38960 42.424 132 68 3 1 127 1 129 6.52e-25 97.4
MsG0480021151.01.T01 AT5G15850 33.143 175 90 4 5 163 12 175 8.23e-20 87.4
MsG0480021151.01.T01 AT2G24790 43.478 92 43 1 5 96 8 90 1.23e-18 82.0
MsG0480021151.01.T01 AT2G24790 43.478 92 43 1 5 96 8 90 1.33e-18 83.2
MsG0480021151.01.T01 AT3G02380 43.478 92 43 1 5 96 16 98 1.59e-17 80.9
MsG0480021151.01.T01 AT5G15840 35.200 125 72 1 5 129 20 135 2.40e-17 79.3
MsG0480021151.01.T01 AT5G15840 35.200 125 72 1 5 129 20 135 2.46e-17 80.5
MsG0480021151.01.T01 AT4G38960 32.000 175 68 4 1 127 1 172 5.72e-17 77.4
MsG0480021151.01.T01 AT5G24930 41.667 96 47 1 5 100 6 92 7.92e-17 79.0
MsG0480021151.01.T01 AT2G47890 42.353 85 40 1 5 89 13 88 2.23e-14 71.6
MsG0480021151.01.T01 AT2G47890 42.353 85 40 1 5 89 13 88 2.27e-14 71.6
MsG0480021151.01.T01 AT2G47890 42.353 85 40 1 5 89 13 88 4.30e-14 69.7
MsG0480021151.01.T01 AT1G28050 34.653 101 57 1 2 102 6 97 3.95e-13 68.6
MsG0480021151.01.T01 AT1G68190 34.375 96 52 2 1 96 39 123 7.36e-13 67.8
MsG0480021151.01.T01 AT1G68190 34.375 96 52 2 1 96 10 94 8.23e-13 67.4
MsG0480021151.01.T01 AT1G68190 34.375 96 52 2 1 96 10 94 8.23e-13 67.4
MsG0480021151.01.T01 AT2G33500 34.000 100 57 1 3 102 10 100 1.22e-12 67.0
MsG0480021151.01.T01 AT2G33500 34.000 100 57 1 3 102 10 100 1.26e-12 67.0
MsG0480021151.01.T01 AT3G07650 37.647 85 44 1 1 85 1 76 1.41e-12 66.6
MsG0480021151.01.T01 AT3G07650 37.647 85 44 1 1 85 1 76 1.41e-12 66.6
MsG0480021151.01.T01 AT3G07650 37.647 85 44 1 1 85 1 76 1.41e-12 66.6
MsG0480021151.01.T01 AT3G07650 37.647 85 44 1 1 85 1 76 1.41e-12 66.6
MsG0480021151.01.T01 AT5G48250 32.653 98 55 2 1 96 1 89 1.98e-11 63.5
MsG0480021151.01.T01 AT5G57660 33.333 93 49 2 4 96 21 100 2.69e-11 62.8

Find 84 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTAGCTGGTAGTCTTTC+TGG 0.109250 4:-54399927 MsG0480021151.01.T01:CDS
TTGGGCTGTTGATGATTTCT+TGG 0.216145 4:-54399745 MsG0480021151.01.T01:CDS
TGCTCTATGTTCCTTAAGTA+TGG 0.249200 4:+54398517 None:intergenic
TGTTATCTTGAAGACCATTT+TGG 0.263913 4:-54398608 MsG0480021151.01.T01:three_prime_UTR
GATGATTTCTTGGAATTAAC+TGG 0.278064 4:-54399735 MsG0480021151.01.T01:CDS
TATAATATTCCAAACCCTTT+TGG 0.279477 4:+54401156 None:intergenic
CAGAAGCAATCCATGGAGTT+TGG 0.289917 4:-54399130 MsG0480021151.01.T01:CDS
TAGCTGGCTATACAAAATTT+AGG 0.294381 4:-54398203 MsG0480021151.01.T01:three_prime_UTR
ACTTGGCAGATATCACATTT+AGG 0.310599 4:+54400912 None:intergenic
GTAAGACATATAAGATTTAG+AGG 0.311347 4:+54398985 None:intergenic
TCACACCCTCCATGCAATAT+TGG 0.314951 4:-54398660 MsG0480021151.01.T01:three_prime_UTR
ACACTGCCAGCATGCATTAC+TGG 0.340744 4:+54399022 None:intergenic
TACCGGTATCCGTGTGGCTT+TGG 0.344898 4:-54399883 MsG0480021151.01.T01:CDS
ACGGGAACTTGTTGCGTGTC+TGG 0.356267 4:+54399810 None:intergenic
AAAATAGTCAAAAGTATTGA+TGG 0.360457 4:+54401191 None:intergenic
AGCGTAGAATTATACCTTAA+AGG 0.365074 4:-54398734 MsG0480021151.01.T01:three_prime_UTR
CACACCCTCCATGCAATATT+GGG 0.366816 4:-54398659 MsG0480021151.01.T01:three_prime_UTR
TAAAGTTGTCTTACCTTGTC+TGG 0.367338 4:+54399702 None:intergenic
TGCCTAGTTTCGCATCCTCT+TGG 0.378192 4:-54399764 MsG0480021151.01.T01:CDS
GCCTAGTTTCGCATCCTCTT+GGG 0.385410 4:-54399763 MsG0480021151.01.T01:CDS
CTCATCCATCTACAGATTCA+TGG 0.393449 4:+54398862 None:intergenic
CAAAACTGCTATAAGTACTA+TGG 0.400726 4:-54398496 MsG0480021151.01.T01:three_prime_UTR
AGACTACCAGCTACATGAAT+TGG 0.402532 4:+54399933 None:intergenic
AAGAGGTGTTGGATTTGATA+AGG 0.412876 4:-54401102 MsG0480021151.01.T01:five_prime_UTR
CTAAACCTTCCTGAGGAAAC+TGG 0.421815 4:+54399068 None:intergenic
GTGTAGCAATTATACCAAAA+TGG 0.430154 4:+54398594 None:intergenic
ATTAACTTGATCCATACTTA+AGG 0.430475 4:-54398528 MsG0480021151.01.T01:three_prime_UTR
TAAGATTTAGAGGCTTTGTA+AGG 0.437114 4:+54398995 None:intergenic
CGATGATGATGAGCACTTCA+TGG 0.441777 4:-54398930 MsG0480021151.01.T01:CDS
TGAGTGAATGGAATATGTTT+TGG 0.446035 4:+54401265 None:intergenic
CATGTGCTTTAGCCGAGATC+TGG 0.447542 4:+54398905 None:intergenic
AATTTGATATATGACTTGAA+TGG 0.449722 4:+54398173 None:intergenic
TGGAGTTTGGAGAGCTTGAA+TGG 0.451045 4:-54399117 MsG0480021151.01.T01:CDS
TGTTGCGTGTCTGGATTAGA+TGG 0.466529 4:+54399819 None:intergenic
TGGGCAGTTTATGTTGTGTA+TGG 0.467883 4:-54398640 MsG0480021151.01.T01:three_prime_UTR
CTGTTCCATGAATCTGTAGA+TGG 0.473976 4:-54398867 MsG0480021151.01.T01:three_prime_UTR
AGCCAAAGCCACACGGATAC+CGG 0.489165 4:+54399881 None:intergenic
AAAGGTATTAAAACTTTGCA+TGG 0.491551 4:-54398716 MsG0480021151.01.T01:three_prime_UTR
GCACAACAAATCACCGTAGC+AGG 0.495596 4:+54401041 None:intergenic
ACAGATTCATGGAACAGAAC+AGG 0.495779 4:+54398873 None:intergenic
CTGGATTAGATGGTTCAACT+TGG 0.497438 4:+54399829 None:intergenic
TTTCAATGACCAGTTTCCTC+AGG 0.500064 4:-54399077 MsG0480021151.01.T01:CDS
CTGAGGAGGAGAAACTTTGA+CGG 0.504586 4:+54399791 None:intergenic
CACTTCATGGTGCCAGATCT+CGG 0.507917 4:-54398917 MsG0480021151.01.T01:CDS
TACCGGTAGCAAGGAAGCGC+TGG 0.512715 4:+54399898 None:intergenic
CTTGAATGGCTATCGGATGC+AGG 0.516958 4:-54399103 MsG0480021151.01.T01:CDS
TATTGGAAGAGAAGAGGTGT+TGG 0.520050 4:-54401113 MsG0480021151.01.T01:five_prime_UTR
TCAACACAAAATATGAAAGC+TGG 0.522233 4:+54399990 None:intergenic
GCCCAAGAGGATGCGAAACT+AGG 0.529539 4:+54399762 None:intergenic
TCATGTCGGACTTCAATCCT+AGG 0.531676 4:+54398956 None:intergenic
AGACCGAGCACTGTTCTGTA+AGG 0.533969 4:-54399967 MsG0480021151.01.T01:CDS
AGTGTGTGAATGAGAAGATA+AGG 0.538140 4:+54401306 None:intergenic
ATATGGCCTGAAAATGTAGC+TGG 0.542282 4:-54398219 MsG0480021151.01.T01:three_prime_UTR
AGCTTGCTAGCAAGCATCAA+AGG 0.550543 4:-54400965 MsG0480021151.01.T01:CDS
TTCAAGCTCTCCAAACTCCA+TGG 0.552963 4:+54399120 None:intergenic
CACCAGCGCTTCCTTGCTAC+CGG 0.553385 4:-54399900 MsG0480021151.01.T01:CDS
TGGAGAGCTTGAATGGCTAT+CGG 0.557707 4:-54399110 MsG0480021151.01.T01:CDS
AAACTAGGCACTTGCTGAGG+AGG 0.565089 4:+54399777 None:intergenic
TGGTATAATTGCTACACTGA+GGG 0.566135 4:-54398588 MsG0480021151.01.T01:three_prime_UTR
ATCAAATTAACTAGAAAATG+TGG 0.570188 4:-54398158 MsG0480021151.01.T01:three_prime_UTR
CAACTTCCAGTAATGCATGC+TGG 0.570734 4:-54399028 MsG0480021151.01.T01:CDS
GATCATTGTTTACAATCTAG+AGG 0.572052 4:-54398686 MsG0480021151.01.T01:three_prime_UTR
AATTAACTAGAAAATGTGGT+TGG 0.574049 4:-54398154 MsG0480021151.01.T01:three_prime_UTR
TGAGGAGGAGAAACTTTGAC+GGG 0.575513 4:+54399792 None:intergenic
AATGACCAGTTTCCTCAGGA+AGG 0.575639 4:-54399073 MsG0480021151.01.T01:CDS
TAGTCAAAAGTATTGATGGA+TGG 0.582591 4:+54401195 None:intergenic
CATCATCATCGTCTTCATGT+CGG 0.589449 4:+54398942 None:intergenic
ACTGCCCAATATTGCATGGA+GGG 0.591613 4:+54398655 None:intergenic
CGGTAGCAAGGAAGCGCTGG+TGG 0.597801 4:+54399901 None:intergenic
GAAATCATCAACAGCCCAAG+AGG 0.601713 4:+54399749 None:intergenic
ATGGAACAGAACAGGCGAGA+TGG 0.604332 4:+54398881 None:intergenic
GATGAACCAATTCATGTAGC+TGG 0.610215 4:-54399939 MsG0480021151.01.T01:CDS
TGGCTTTGATTCACCAGACA+AGG 0.610663 4:-54399715 MsG0480021151.01.T01:intron
ATAAACTGCCCAATATTGCA+TGG 0.610872 4:+54398651 None:intergenic
GCATGCATTACTGGAAGTTG+CGG 0.617995 4:+54399031 None:intergenic
CCACACGGATACCGGTAGCA+AGG 0.621121 4:+54399889 None:intergenic
AACTAGAAGCCAAAGCCACA+CGG 0.621527 4:+54399874 None:intergenic
AGTCCTTACAGAACAGTGCT+CGG 0.631276 4:+54399964 None:intergenic
CCTTGCTACCGGTATCCGTG+TGG 0.645262 4:-54399889 MsG0480021151.01.T01:CDS
GCGAAACTAGGCACTTGCTG+AGG 0.649769 4:+54399774 None:intergenic
TTGGTATAATTGCTACACTG+AGG 0.658332 4:-54398589 MsG0480021151.01.T01:three_prime_UTR
AACTGCCCAATATTGCATGG+AGG 0.680248 4:+54398654 None:intergenic
ATCGCATGACAAAAGAACAG+TGG 0.722360 4:-54398254 MsG0480021151.01.T01:three_prime_UTR
GCTGCAGCTAAACCTTCCTG+AGG 0.726877 4:+54399061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTAAAATAATATTTT+TGG - Chr4:54398701-54398720 MsG0480021151.01.T01:three_prime_UTR 0.0%
!! AATTAAAAAAAAGACTTTAA+AGG + Chr4:54398688-54398707 None:intergenic 10.0%
!! TAATAATATATTGAATTTGT+AGG - Chr4:54398744-54398763 MsG0480021151.01.T01:three_prime_UTR 10.0%
!! AATAAATTATTATGAGAGTT+TGG - Chr4:54398831-54398850 MsG0480021151.01.T01:three_prime_UTR 15.0%
!! CAAATATTAAAACAACATAA+AGG + Chr4:54400297-54400316 None:intergenic 15.0%
!! CTTCTTATTCAAAATAAATA+GGG + Chr4:54399208-54399227 None:intergenic 15.0%
!! GATAAACAGTTTAAAAATAT+TGG - Chr4:54398340-54398359 MsG0480021151.01.T01:three_prime_UTR 15.0%
!! TACTATTAACATAATCATAA+AGG + Chr4:54400255-54400274 None:intergenic 15.0%
!!! CTTTATGTTGTTTTAATATT+TGG - Chr4:54400295-54400314 MsG0480021151.01.T01:intron 15.0%
!! AATTTGATATATGACTTGAA+TGG + Chr4:54401300-54401319 None:intergenic 20.0%
!! ATATTAAAACAACATAAAGG+AGG + Chr4:54400294-54400313 None:intergenic 20.0%
!! ATCAAATTAACTAGAAAATG+TGG - Chr4:54401312-54401331 MsG0480021151.01.T01:five_prime_UTR 20.0%
!! ATGTGCAAAAAAAAATAACA+TGG + Chr4:54398886-54398905 None:intergenic 20.0%
!! GCTTCTTATTCAAAATAAAT+AGG + Chr4:54399209-54399228 None:intergenic 20.0%
!! TCAAAAAAATCATTGTAAGT+TGG - Chr4:54401149-54401168 MsG0480021151.01.T01:five_prime_UTR 20.0%
!! TGTGCAAAAAAAAATAACAT+GGG + Chr4:54398885-54398904 None:intergenic 20.0%
!!! AAAAATGTCATTTTTGTTGA+CGG + Chr4:54401083-54401102 None:intergenic 20.0%
!!! AAAATAGTCAAAAGTATTGA+TGG + Chr4:54398282-54398301 None:intergenic 20.0%
!!! AATTTGTAGGATTTAAGATT+AGG - Chr4:54398757-54398776 MsG0480021151.01.T01:three_prime_UTR 20.0%
!!! ATTTGTAGGATTTAAGATTA+GGG - Chr4:54398758-54398777 MsG0480021151.01.T01:three_prime_UTR 20.0%
!!! TCAATACTTTTGACTATTTT+TGG - Chr4:54398282-54398301 MsG0480021151.01.T01:three_prime_UTR 20.0%
!!! TCTGTTTATATGAATTTTTG+AGG - Chr4:54400168-54400187 MsG0480021151.01.T01:intron 20.0%
! AAAATCTTCATGAATCTACA+TGG + Chr4:54398929-54398948 None:intergenic 25.0%
! AATCAATGTCTTGGAATAAA+TGG - Chr4:54399061-54399080 MsG0480021151.01.T01:CDS 25.0%
! AATTAACTAGAAAATGTGGT+TGG - Chr4:54401316-54401335 MsG0480021151.01.T01:five_prime_UTR 25.0%
! ATAATTGTCTTTGATTGGAT+TGG - Chr4:54398997-54399016 MsG0480021151.01.T01:CDS 25.0%
! ATAGATAGAAATCAATGTCT+TGG - Chr4:54399052-54399071 MsG0480021151.01.T01:CDS 25.0%
! ATCCTATAGTTATAAGATGA+AGG + Chr4:54399457-54399476 None:intergenic 25.0%
! ATGCTATAATTGTCTTTGAT+TGG - Chr4:54398992-54399011 MsG0480021151.01.T01:CDS 25.0%
! CATTATTTCATTAAACGAAC+TGG + Chr4:54400096-54400115 None:intergenic 25.0%
! GTAAGACATATAAGATTTAG+AGG + Chr4:54400488-54400507 None:intergenic 25.0%
! TAAAAATATTGGAAGAGAAG+AGG - Chr4:54398351-54398370 MsG0480021151.01.T01:three_prime_UTR 25.0%
! TCATATAAACAGAAACCAAA+CGG + Chr4:54400161-54400180 None:intergenic 25.0%
! TGAGAGATTATGATTTATGA+TGG - Chr4:54399846-54399865 MsG0480021151.01.T01:CDS 25.0%
!! AGATTATGATTTATGATGGA+GGG - Chr4:54399850-54399869 MsG0480021151.01.T01:CDS 25.0%
!! ATTAACTTGATCCATACTTA+AGG - Chr4:54400942-54400961 MsG0480021151.01.T01:CDS 25.0%
!! TATAATATTCCAAACCCTTT+TGG + Chr4:54398317-54398336 None:intergenic 25.0%
!!! AAAGGTATTAAAACTTTGCA+TGG - Chr4:54400754-54400773 MsG0480021151.01.T01:intron 25.0%
!!! AAGACATTGATTTCTATCTA+TGG + Chr4:54399053-54399072 None:intergenic 25.0%
!!! AGTGGTTAGTTTTACAAATA+TGG - Chr4:54401234-54401253 MsG0480021151.01.T01:five_prime_UTR 25.0%
!!! ATTTTGAATAAGAAGCATCT+AGG - Chr4:54399213-54399232 MsG0480021151.01.T01:intron 25.0%
!!! GCAAAGTTTTAATACCTTTA+AGG + Chr4:54400753-54400772 None:intergenic 25.0%
AAAATTGCAATATTCGGATC+GGG + Chr4:54399346-54399365 None:intergenic 30.0%
AAATGCTAAATCTGATGTAC+TGG + Chr4:54399256-54399275 None:intergenic 30.0%
AATGCTAAATCTGATGTACT+GGG + Chr4:54399255-54399274 None:intergenic 30.0%
AGCAAAAACAAAACCATACT+TGG + Chr4:54398578-54398597 None:intergenic 30.0%
AGCGTAGAATTATACCTTAA+AGG - Chr4:54400736-54400755 MsG0480021151.01.T01:intron 30.0%
ATATGTCTTACAAAAAGCCT+AGG - Chr4:54400497-54400516 MsG0480021151.01.T01:intron 30.0%
CAAAACTGCTATAAGTACTA+TGG - Chr4:54400974-54400993 MsG0480021151.01.T01:CDS 30.0%
GAAAATTGCAATATTCGGAT+CGG + Chr4:54399347-54399366 None:intergenic 30.0%
GAGATTATGATTTATGATGG+AGG - Chr4:54399849-54399868 MsG0480021151.01.T01:CDS 30.0%
GATCATTGTTTACAATCTAG+AGG - Chr4:54400784-54400803 MsG0480021151.01.T01:intron 30.0%
GATGATTTCTTGGAATTAAC+TGG - Chr4:54399735-54399754 MsG0480021151.01.T01:CDS 30.0%
GTGTAGCAATTATACCAAAA+TGG + Chr4:54400879-54400898 None:intergenic 30.0%
TAGCTGGCTATACAAAATTT+AGG - Chr4:54401267-54401286 MsG0480021151.01.T01:five_prime_UTR 30.0%
TCAACACAAAATATGAAAGC+TGG + Chr4:54399483-54399502 None:intergenic 30.0%
! ATTGAAAAAGTGTGAGTGAA+TGG + Chr4:54398220-54398239 None:intergenic 30.0%
! TAAGATTTAGAGGCTTTGTA+AGG + Chr4:54400478-54400497 None:intergenic 30.0%
! TGAGTGAATGGAATATGTTT+TGG + Chr4:54398208-54398227 None:intergenic 30.0%
! TGTTATCTTGAAGACCATTT+TGG - Chr4:54400862-54400881 MsG0480021151.01.T01:intron 30.0%
! TGTTGATAAATGATCTGTGA+AGG - Chr4:54399944-54399963 MsG0480021151.01.T01:CDS 30.0%
! TTGCTTCTGAAAAGAAAGAA+AGG + Chr4:54400329-54400348 None:intergenic 30.0%
! TTTTGAATTGTGTTTCGAAC+TGG - Chr4:54399374-54399393 MsG0480021151.01.T01:intron 30.0%
!! ACACTTTTGATCGATTCTTT+AGG + Chr4:54399178-54399197 None:intergenic 30.0%
!! TAGTCAAAAGTATTGATGGA+TGG + Chr4:54398278-54398297 None:intergenic 30.0%
!! TTTGGCTTGAAAAACCAAAA+GGG - Chr4:54398300-54398319 MsG0480021151.01.T01:three_prime_UTR 30.0%
!!! ATGGATGATTTTACTGACTT+TGG - Chr4:54399431-54399450 MsG0480021151.01.T01:intron 30.0%
!!! TTTTGGCTTGAAAAACCAAA+AGG - Chr4:54398299-54398318 MsG0480021151.01.T01:three_prime_UTR 30.0%
AATGTGATATCTGCCAAGTA+TGG - Chr4:54398562-54398581 MsG0480021151.01.T01:three_prime_UTR 35.0%
ACTTGGCAGATATCACATTT+AGG + Chr4:54398561-54398580 None:intergenic 35.0%
AGTGTGTGAATGAGAAGATA+AGG + Chr4:54398167-54398186 None:intergenic 35.0%
ATAAACTGCCCAATATTGCA+TGG + Chr4:54400822-54400841 None:intergenic 35.0%
CCGGTGAAAATTGCAATATT+CGG + Chr4:54399352-54399371 None:intergenic 35.0%
CGAAACACAATTCAAAATCC+CGG + Chr4:54399371-54399390 None:intergenic 35.0%
CTTGAAAAACCAAAAGGGTT+TGG - Chr4:54398305-54398324 MsG0480021151.01.T01:three_prime_UTR 35.0%
GGCCTTCATCTTATAACTAT+AGG - Chr4:54399452-54399471 MsG0480021151.01.T01:intron 35.0%
TAAAGTTGTCTTACCTTGTC+TGG + Chr4:54399771-54399790 None:intergenic 35.0%
TGCTCTATGTTCCTTAAGTA+TGG + Chr4:54400956-54400975 None:intergenic 35.0%
TGGTATAATTGCTACACTGA+GGG - Chr4:54400882-54400901 MsG0480021151.01.T01:intron 35.0%
TTGGTATAATTGCTACACTG+AGG - Chr4:54400881-54400900 MsG0480021151.01.T01:intron 35.0%
! CCGAATATTGCAATTTTCAC+CGG - Chr4:54399349-54399368 MsG0480021151.01.T01:intron 35.0%
! CGAATATTGCAATTTTCACC+GGG - Chr4:54399350-54399369 MsG0480021151.01.T01:intron 35.0%
! GTTGAAGTATTTGCTGAACA+TGG - Chr4:54399412-54399431 MsG0480021151.01.T01:intron 35.0%
! TTCTTTTCAGAAGCAATCCA+TGG - Chr4:54400333-54400352 MsG0480021151.01.T01:intron 35.0%
! TTCTTTTGTCATGCGATACA+TGG + Chr4:54401213-54401232 None:intergenic 35.0%
!! AAGAGGTGTTGGATTTGATA+AGG - Chr4:54398368-54398387 MsG0480021151.01.T01:three_prime_UTR 35.0%
!! TTGGCTTTTCTCATTGTCTT+TGG + Chr4:54399625-54399644 None:intergenic 35.0%
AACCATATTTGCACAGGCAA+TGG - Chr4:54400209-54400228 MsG0480021151.01.T01:intron 40.0%
ACAGATTCATGGAACAGAAC+AGG + Chr4:54400600-54400619 None:intergenic 40.0%
ACTTCGAACCATATTTGCAC+AGG - Chr4:54400203-54400222 MsG0480021151.01.T01:intron 40.0%
AGACTACCAGCTACATGAAT+TGG + Chr4:54399540-54399559 None:intergenic 40.0%
ATACCACTAGACTAACCCTT+AGG - Chr4:54399136-54399155 MsG0480021151.01.T01:intron 40.0%
ATATGGCCTGAAAATGTAGC+TGG - Chr4:54401251-54401270 MsG0480021151.01.T01:five_prime_UTR 40.0%
ATCGCATGACAAAAGAACAG+TGG - Chr4:54401216-54401235 MsG0480021151.01.T01:five_prime_UTR 40.0%
ATCTGTGAAGGAAACCAACT+TGG - Chr4:54399956-54399975 MsG0480021151.01.T01:CDS 40.0%
CATCATCATCGTCTTCATGT+CGG + Chr4:54400531-54400550 None:intergenic 40.0%
CCAAACTAACCCACCAAAAT+GGG + Chr4:54400056-54400075 None:intergenic 40.0%
CTCATCCATCTACAGATTCA+TGG + Chr4:54400611-54400630 None:intergenic 40.0%
CTGTTCCATGAATCTGTAGA+TGG - Chr4:54400603-54400622 MsG0480021151.01.T01:intron 40.0%
GATGAACCAATTCATGTAGC+TGG - Chr4:54399531-54399550 MsG0480021151.01.T01:intron 40.0%
GATGATGTTGTGTTTGTAGC+AGG - Chr4:54399083-54399102 MsG0480021151.01.T01:CDS 40.0%
TACCACTAGACTAACCCTTA+GGG - Chr4:54399137-54399156 MsG0480021151.01.T01:intron 40.0%
TACCATTGCCTGTGCAAATA+TGG + Chr4:54400214-54400233 None:intergenic 40.0%
TATTTGCACAGGCAATGGTA+AGG - Chr4:54400214-54400233 MsG0480021151.01.T01:intron 40.0%
TCTGTGAAGGAAACCAACTT+GGG - Chr4:54399957-54399976 MsG0480021151.01.T01:CDS 40.0%
TGGGCAGTTTATGTTGTGTA+TGG - Chr4:54400830-54400849 MsG0480021151.01.T01:intron 40.0%
TTTCAATGACCAGTTTCCTC+AGG - Chr4:54400393-54400412 MsG0480021151.01.T01:intron 40.0%
! CACACTCGCTATATTTTGCA+TGG - Chr4:54398181-54398200 MsG0480021151.01.T01:three_prime_UTR 40.0%
! CTGGATTAGATGGTTCAACT+TGG + Chr4:54399644-54399663 None:intergenic 40.0%
! GTATAGCCAGCTACATTTTC+AGG + Chr4:54401260-54401279 None:intergenic 40.0%
! TATTGGAAGAGAAGAGGTGT+TGG - Chr4:54398357-54398376 MsG0480021151.01.T01:three_prime_UTR 40.0%
!! GATTCTCTAAAGCCATTGCA+CGG + Chr4:54399324-54399343 None:intergenic 40.0%
!! TAAGGGTTAGTCTAGTGGTA+TGG + Chr4:54399137-54399156 None:intergenic 40.0%
!! TTGGGCTGTTGATGATTTCT+TGG - Chr4:54399725-54399744 MsG0480021151.01.T01:CDS 40.0%
AAAGCCATTGCACGGTGTAA+CGG + Chr4:54399316-54399335 None:intergenic 45.0%
AACTAGAAGCCAAAGCCACA+CGG + Chr4:54399599-54399618 None:intergenic 45.0%
AACTGCCCAATATTGCATGG+AGG + Chr4:54400819-54400838 None:intergenic 45.0%
AATGACCAGTTTCCTCAGGA+AGG - Chr4:54400397-54400416 MsG0480021151.01.T01:intron 45.0%
ACTGCCCAATATTGCATGGA+GGG + Chr4:54400818-54400837 None:intergenic 45.0%
AGTCCTTACAGAACAGTGCT+CGG + Chr4:54399509-54399528 None:intergenic 45.0%
ATCGAACATGTGACCTTGAG+AGG + Chr4:54400022-54400041 None:intergenic 45.0%
ATGTCCTATTCGTGCCCTAA+GGG + Chr4:54399154-54399173 None:intergenic 45.0%
CAACTTCCAGTAATGCATGC+TGG - Chr4:54400442-54400461 MsG0480021151.01.T01:intron 45.0%
CACACCCTCCATGCAATATT+GGG - Chr4:54400811-54400830 MsG0480021151.01.T01:intron 45.0%
CAGAAGCAATCCATGGAGTT+TGG - Chr4:54400340-54400359 MsG0480021151.01.T01:intron 45.0%
CAGGAATCGAACCCTTTCTT+CGG - Chr4:54399102-54399121 MsG0480021151.01.T01:CDS 45.0%
CATGTAGCTGGTAGTCTTTC+TGG - Chr4:54399543-54399562 MsG0480021151.01.T01:intron 45.0%
CTAAACCTTCCTGAGGAAAC+TGG + Chr4:54400405-54400424 None:intergenic 45.0%
CTGAGGAGGAGAAACTTTGA+CGG + Chr4:54399682-54399701 None:intergenic 45.0%
GAAATCATCAACAGCCCAAG+AGG + Chr4:54399724-54399743 None:intergenic 45.0%
GCATGCATTACTGGAAGTTG+CGG + Chr4:54400442-54400461 None:intergenic 45.0%
GCCAAACTAACCCACCAAAA+TGG + Chr4:54400057-54400076 None:intergenic 45.0%
GTGTGAAAAAGCTCCTGCTA+CGG - Chr4:54398416-54398435 MsG0480021151.01.T01:three_prime_UTR 45.0%
TAACCCACCAAAATGGGTAC+CGG + Chr4:54400050-54400069 None:intergenic 45.0%
TACACACTAACTCTGCCGTT+TGG - Chr4:54400143-54400162 MsG0480021151.01.T01:intron 45.0%
TCACACCCTCCATGCAATAT+TGG - Chr4:54400810-54400829 MsG0480021151.01.T01:intron 45.0%
TCATGTCGGACTTCAATCCT+AGG + Chr4:54400517-54400536 None:intergenic 45.0%
TGAAGGAAACCAACTTGGGT+TGG - Chr4:54399961-54399980 MsG0480021151.01.T01:CDS 45.0%
TGAGGAGGAGAAACTTTGAC+GGG + Chr4:54399681-54399700 None:intergenic 45.0%
TGGAGAGCTTGAATGGCTAT+CGG - Chr4:54400360-54400379 MsG0480021151.01.T01:intron 45.0%
TGGAGTTTGGAGAGCTTGAA+TGG - Chr4:54400353-54400372 MsG0480021151.01.T01:intron 45.0%
TTCAAGCTCTCCAAACTCCA+TGG + Chr4:54400353-54400372 None:intergenic 45.0%
! CGATGATGATGAGCACTTCA+TGG - Chr4:54400540-54400559 MsG0480021151.01.T01:intron 45.0%
! TGTTGCGTGTCTGGATTAGA+TGG + Chr4:54399654-54399673 None:intergenic 45.0%
!! AGCTTGCTAGCAAGCATCAA+AGG - Chr4:54398505-54398524 MsG0480021151.01.T01:three_prime_UTR 45.0%
!! GGGTTAGTTTGGCTCTATGA+AGG - Chr4:54400064-54400083 MsG0480021151.01.T01:intron 45.0%
!! TGGCTTTGATTCACCAGACA+AGG - Chr4:54399755-54399774 MsG0480021151.01.T01:CDS 45.0%
!!! CCCATTTTGGTGGGTTAGTT+TGG - Chr4:54400053-54400072 MsG0480021151.01.T01:intron 45.0%
AACCCACCAAAATGGGTACC+GGG + Chr4:54400049-54400068 None:intergenic 50.0%
AAGCCATTGCACGGTGTAAC+GGG + Chr4:54399315-54399334 None:intergenic 50.0%
ACACTGCCAGCATGCATTAC+TGG + Chr4:54400451-54400470 None:intergenic 50.0%
ACCACAAAGCCAACCCAAGT+TGG + Chr4:54399973-54399992 None:intergenic 50.0%
ATGGAACAGAACAGGCGAGA+TGG + Chr4:54400592-54400611 None:intergenic 50.0%
CATGTCCTATTCGTGCCCTA+AGG + Chr4:54399155-54399174 None:intergenic 50.0%
CATGTGCTTTAGCCGAGATC+TGG + Chr4:54400568-54400587 None:intergenic 50.0%
CTAACCCTTAGGGCACGAAT+AGG - Chr4:54399147-54399166 MsG0480021151.01.T01:intron 50.0%
CTTGAATGGCTATCGGATGC+AGG - Chr4:54400367-54400386 MsG0480021151.01.T01:intron 50.0%
GCACAACAAATCACCGTAGC+AGG + Chr4:54398432-54398451 None:intergenic 50.0%
GCCTAGTTTCGCATCCTCTT+GGG - Chr4:54399707-54399726 MsG0480021151.01.T01:intron 50.0%
GGACTGAGACACCGAAGAAA+GGG + Chr4:54399116-54399135 None:intergenic 50.0%
GTCACATGTTCGATTCTCCC+CGG - Chr4:54400028-54400047 MsG0480021151.01.T01:intron 50.0%
TGCCTAGTTTCGCATCCTCT+TGG - Chr4:54399706-54399725 MsG0480021151.01.T01:intron 50.0%
TGGACTGAGACACCGAAGAA+AGG + Chr4:54399117-54399136 None:intergenic 50.0%
! AAACTAGGCACTTGCTGAGG+AGG + Chr4:54399696-54399715 None:intergenic 50.0%
! AGACCGAGCACTGTTCTGTA+AGG - Chr4:54399503-54399522 MsG0480021151.01.T01:intron 50.0%
! ATTCTCCCCGGTACCCATTT+TGG - Chr4:54400040-54400059 MsG0480021151.01.T01:intron 50.0%
! CACTTCATGGTGCCAGATCT+CGG - Chr4:54400553-54400572 MsG0480021151.01.T01:intron 50.0%
!! ACCAACTTGGGTTGGCTTTG+TGG - Chr4:54399969-54399988 MsG0480021151.01.T01:CDS 50.0%
!! TGCCCTAAGGGTTAGTCTAG+TGG + Chr4:54399142-54399161 None:intergenic 50.0%
!! TGGCTTTGTGGTGTTGGCTT+GGG - Chr4:54399981-54400000 MsG0480021151.01.T01:CDS 50.0%
!! TTGGCTTTGTGGTGTTGGCT+TGG - Chr4:54399980-54399999 MsG0480021151.01.T01:CDS 50.0%
!! TTGGGTTGGCTTTGTGGTGT+TGG - Chr4:54399975-54399994 MsG0480021151.01.T01:CDS 50.0%
AGCCAAAGCCACACGGATAC+CGG + Chr4:54399592-54399611 None:intergenic 55.0%
CAACCCGTTACACCGTGCAA+TGG - Chr4:54399309-54399328 MsG0480021151.01.T01:intron 55.0%
CTTCGAGTGTGCTCCTCTCA+AGG - Chr4:54400006-54400025 MsG0480021151.01.T01:intron 55.0%
GCCCAAGAGGATGCGAAACT+AGG + Chr4:54399711-54399730 None:intergenic 55.0%
GCTGCAGCTAAACCTTCCTG+AGG + Chr4:54400412-54400431 None:intergenic 55.0%
TACCGGTATCCGTGTGGCTT+TGG - Chr4:54399587-54399606 MsG0480021151.01.T01:intron 55.0%
! ACCCACCAAAATGGGTACCG+GGG + Chr4:54400048-54400067 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCGA+AGG + Chr4:54400008-54400027 None:intergenic 55.0%
! GCGAAACTAGGCACTTGCTG+AGG + Chr4:54399699-54399718 None:intergenic 55.0%
!! ACGGGAACTTGTTGCGTGTC+TGG + Chr4:54399663-54399682 None:intergenic 55.0%
!! TCCCCGGTACCCATTTTGGT+GGG - Chr4:54400044-54400063 MsG0480021151.01.T01:intron 55.0%
!! TTGCACGGTGTAACGGGTTG+TGG + Chr4:54399309-54399328 None:intergenic 55.0%
CACCAGCGCTTCCTTGCTAC+CGG - Chr4:54399570-54399589 MsG0480021151.01.T01:intron 60.0%
CCACACGGATACCGGTAGCA+AGG + Chr4:54399584-54399603 None:intergenic 60.0%
CCTTGCTACCGGTATCCGTG+TGG - Chr4:54399581-54399600 MsG0480021151.01.T01:intron 60.0%
! CTCCCCGGTACCCATTTTGG+TGG - Chr4:54400043-54400062 MsG0480021151.01.T01:intron 60.0%
! TACCGGTAGCAAGGAAGCGC+TGG + Chr4:54399575-54399594 None:intergenic 60.0%
!! CGGTAGCAAGGAAGCGCTGG+TGG + Chr4:54399572-54399591 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 54398152 54401340 54398152 ID=MsG0480021151.01;Name=MsG0480021151.01
Chr4 mRNA 54398152 54401340 54398152 ID=MsG0480021151.01.T01;Parent=MsG0480021151.01;Name=MsG0480021151.01.T01;_AED=0.25;_eAED=0.25;_QI=244|1|1|1|1|1|3|761|240
Chr4 exon 54398152 54399149 54398152 ID=MsG0480021151.01.T01:exon:20209;Parent=MsG0480021151.01.T01
Chr4 exon 54399716 54400018 54399716 ID=MsG0480021151.01.T01:exon:20208;Parent=MsG0480021151.01.T01
Chr4 exon 54400914 54401340 54400914 ID=MsG0480021151.01.T01:exon:20207;Parent=MsG0480021151.01.T01
Chr4 five_prime_UTR 54401097 54401340 54401097 ID=MsG0480021151.01.T01:five_prime_utr;Parent=MsG0480021151.01.T01
Chr4 CDS 54400914 54401096 54400914 ID=MsG0480021151.01.T01:cds;Parent=MsG0480021151.01.T01
Chr4 CDS 54399716 54400018 54399716 ID=MsG0480021151.01.T01:cds;Parent=MsG0480021151.01.T01
Chr4 CDS 54398913 54399149 54398913 ID=MsG0480021151.01.T01:cds;Parent=MsG0480021151.01.T01
Chr4 three_prime_UTR 54398152 54398912 54398152 ID=MsG0480021151.01.T01:three_prime_utr;Parent=MsG0480021151.01.T01
Gene Sequence

>MsG0480021151.01.T01

ATGAAAATACAGTGTGATGTGTGTGAAAAAGCTCCTGCTACGGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTCTTTCTAACAAGCTTCCTAAATGTGATATCTGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACCGAGCACTGTTCTGTAAGGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGGAAACCACCAGCGCTTCCTTGCTACCGGTATCCGTGTGGCTTTGGCTTCTAGTTGCACCAAAGACAATGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACGCAACAAGTTCCCGTCAAAGTTTCTCCTCCTCAGCAAGTGCCTAGTTTCGCATCCTCTTGGGCTGTTGATGATTTCTTGGAATTAACTGGCTTTGATTCACCAGACAAGAAGCAATCCATGGAGTTTGGAGAGCTTGAATGGCTATCGGATGCAGGTCTTTTCAATGACCAGTTTCCTCAGGAAGGTTTAGCTGCAGCTGAAGTTCCGCAACTTCCAGTAATGCATGCTGGCAGTGTTTATCCTTACAAAGCCTCTAAATCTTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAAGACGATGATGATGAGCACTTCATGGTGCCAGATCTCGGCTAA

Protein sequence

>MsG0480021151.01.T01

MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSGNHQRFLATGIRVALASSCTKDNEKSQVEPSNPDTQQVPVKVSPPQQVPSFASSWAVDDFLELTGFDSPDKKQSMEFGELEWLSDAGLFNDQFPQEGLAAAEVPQLPVMHAGSVYPYKASKSYMSYKKPRIEVRHEDDDDEHFMVPDLG*