AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023274.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023274.01.T01 MTR_4g094615 64.039 203 40 5 104 273 258 460 1.46e-73 234
MsG0480023274.01.T01 MTR_4g094615 93.750 80 5 0 1 80 26 105 1.28e-33 128
MsG0480023274.01.T01 MTR_4g094615 81.250 112 21 0 104 215 258 369 4.59e-57 189
MsG0480023274.01.T01 MTR_4g094615 93.750 80 5 0 1 80 26 105 1.84e-33 127
MsG0480023274.01.T01 MTR_4g094615 81.250 112 21 0 104 215 258 369 6.09e-57 189
MsG0480023274.01.T01 MTR_4g094615 93.750 80 5 0 1 80 26 105 3.27e-33 126
MsG0480023274.01.T01 MTR_8g090145 52.358 212 51 7 130 306 24 220 6.22e-49 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023274.01.T01 AT3G51270 86.250 80 11 0 1 80 26 105 7.96e-34 129
MsG0480023274.01.T01 AT3G51270 32.877 219 88 7 104 273 250 458 3.47e-18 85.1
MsG0480023274.01.T01 AT3G51270 86.250 80 11 0 1 80 26 105 9.62e-34 129
MsG0480023274.01.T01 AT3G51270 33.645 214 88 7 104 273 258 461 7.63e-19 87.0
MsG0480023274.01.T01 AT3G51270 86.250 80 11 0 1 80 26 105 9.62e-34 129
MsG0480023274.01.T01 AT3G51270 33.645 214 88 7 104 273 258 461 7.63e-19 87.0
MsG0480023274.01.T01 AT3G51270 86.250 80 11 0 1 80 26 105 9.62e-34 129
MsG0480023274.01.T01 AT3G51270 33.645 214 88 7 104 273 258 461 7.63e-19 87.0

Find 53 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAACCATGTTTAGGATAA+AGG 0.268923 4:-83045261 MsG0480023274.01.T01:intron
ACTTCATCTGGTTTGGCTTA+AGG 0.298500 4:-83044499 MsG0480023274.01.T01:CDS
CTTCGAAACTTCATCTGGTT+TGG 0.307173 4:-83044506 MsG0480023274.01.T01:CDS
TTAAATCGTCTGCTTCATTC+AGG 0.317069 4:+83045493 None:intergenic
GATTACACAATGTCCGGAAC+TGG 0.339196 4:+83048610 None:intergenic
GATAACGACGATTCTGATAA+AGG 0.348942 4:-83045799 MsG0480023274.01.T01:CDS
TGTTGATTCTTTGCATTTGT+CGG 0.381133 4:-83045469 MsG0480023274.01.T01:CDS
ATCTATCTGCAGTTTATTGA+AGG 0.411095 4:-83045570 MsG0480023274.01.T01:intron
TGTTCCTTCGAAACTTCATC+TGG 0.430957 4:-83044511 MsG0480023274.01.T01:CDS
ATCGGTGTTGGAAAAGAATC+TGG 0.439040 4:-83049081 MsG0480023274.01.T01:intron
CAAACATGGCTTCCCAGTTC+CGG 0.443118 4:-83048623 MsG0480023274.01.T01:CDS
AAAGGTGTCTTTGTTTCTGT+TGG 0.455644 4:-83049111 MsG0480023274.01.T01:CDS
CGAAGGAACAGTTCAACACT+TGG 0.465450 4:+83044524 None:intergenic
GGCTTTCGCCTCACCTACCT+TGG 0.475372 4:-83049168 MsG0480023274.01.T01:CDS
CTCAAATGCAAATGAGCAGC+TGG 0.484860 4:-83044948 MsG0480023274.01.T01:intron
TTCTTTGCATTTGTCGGACG+AGG 0.486862 4:-83045463 MsG0480023274.01.T01:intron
GTTTCTGTTGGTCGCCAGAT+CGG 0.488007 4:-83049099 MsG0480023274.01.T01:CDS
GTAATCATGTCACTTGTTCA+AGG 0.489787 4:-83048593 MsG0480023274.01.T01:CDS
GTTGGTCGCCAGATCGGTGT+TGG 0.494100 4:-83049093 MsG0480023274.01.T01:CDS
ATAAATTCTGATAGGGAAGA+TGG 0.495943 4:-83045531 MsG0480023274.01.T01:CDS
GATAAAGGAAGAGACGAAGC+TGG 0.501108 4:-83045784 MsG0480023274.01.T01:CDS
TGACATGATTACACAATGTC+CGG 0.505798 4:+83048604 None:intergenic
GAAGGAAGAAACTTGCATCT+AGG 0.510712 4:-83045017 MsG0480023274.01.T01:CDS
CATGACTCTTCTAAATATGA+TGG 0.511755 4:-83049189 MsG0480023274.01.T01:CDS
TGAAAACAGCGGATCTGAAA+AGG 0.514234 4:-83045202 MsG0480023274.01.T01:CDS
AGTGTGATATAAATTCTGAT+AGG 0.525674 4:-83045539 MsG0480023274.01.T01:CDS
TAGGTCATCTCACAATTCTA+AGG 0.526345 4:-83044971 MsG0480023274.01.T01:CDS
GAGCAGGCTTTGCACAAACA+TGG 0.532199 4:-83048637 MsG0480023274.01.T01:intron
GCAGTTTATTGAAGGTGAGA+TGG 0.533264 4:-83045562 MsG0480023274.01.T01:intron
CAAGCATGGTGGCACCTACA+AGG 0.534773 4:-83049247 MsG0480023274.01.T01:CDS
CATGCTTGAGACAAGCGATT+CGG 0.536427 4:+83049262 None:intergenic
ATTCGGACAATGAGTTCAGC+AGG 0.548681 4:+83049279 None:intergenic
GTGTGATATAAATTCTGATA+GGG 0.552531 4:-83045538 MsG0480023274.01.T01:CDS
GAGAAAATCGTAACCAAGGT+AGG 0.552792 4:+83049155 None:intergenic
TTCTTCGAGTTTAATACTCG+AGG 0.553896 4:-83044585 MsG0480023274.01.T01:CDS
GATACAGAACTTGCTTCTAG+TGG 0.559227 4:-83045718 MsG0480023274.01.T01:CDS
TCTTCAATAGACATTAGCAC+TGG 0.564830 4:-83045748 MsG0480023274.01.T01:CDS
AAAGACACCTTTGTTAAACA+TGG 0.576028 4:+83049122 None:intergenic
CAGGTACTTTGATCGTGATG+TGG 0.577248 4:-83046824 MsG0480023274.01.T01:CDS
CATCATATTTAGAAGAGTCA+TGG 0.590479 4:+83049190 None:intergenic
GTTCAGCAGGTACAATGTCA+TGG 0.595227 4:+83049292 None:intergenic
AAGATGAGGAAGATATTCAG+AGG 0.596089 4:-83045684 MsG0480023274.01.T01:CDS
ATTACACAATGTCCGGAACT+GGG 0.608304 4:+83048611 None:intergenic
CGAATCGCTTGTCTCAAGCA+TGG 0.616715 4:-83049261 MsG0480023274.01.T01:CDS
ATCAAAACCATGTTTAACAA+AGG 0.619492 4:-83049129 MsG0480023274.01.T01:CDS
AGATGAGGAAGATATTCAGA+GGG 0.621735 4:-83045683 MsG0480023274.01.T01:intron
CAAACCAGATGAAGTTTCGA+AGG 0.625279 4:+83044507 None:intergenic
AATCGTAACCAAGGTAGGTG+AGG 0.635562 4:+83049160 None:intergenic
AAACAGCGGATCTGAAAAGG+AGG 0.665431 4:-83045199 MsG0480023274.01.T01:CDS
TGAAAAGGAGGCAAACAACA+CGG 0.675952 4:-83045187 MsG0480023274.01.T01:intron
TGGCGAGAAAATCGTAACCA+AGG 0.682936 4:+83049151 None:intergenic
ATCGCTTGTCTCAAGCATGG+TGG 0.696807 4:-83049258 MsG0480023274.01.T01:CDS
TTTGAAGCAGGTGAAAACAG+CGG 0.739692 4:-83045213 MsG0480023274.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAACAGAATTCAAA+GGG + Chr4:83046379-83046398 None:intergenic 15.0%
!! GAAATATGTATATTATTCAA+TGG - Chr4:83047325-83047344 MsG0480023274.01.T01:intron 15.0%
!! TTTAAATGAATTTAACATCA+TGG - Chr4:83046147-83046166 MsG0480023274.01.T01:intron 15.0%
!!! AAAATTCTATCGATTTTATT+AGG - Chr4:83048635-83048654 MsG0480023274.01.T01:intron 15.0%
!!! ATAATATAGATTTTGAATTG+TGG - Chr4:83045708-83045727 MsG0480023274.01.T01:CDS 15.0%
!!! ATCTAAAACTAAACAATATA+GGG + Chr4:83045669-83045688 None:intergenic 15.0%
!!! TATCTAAAACTAAACAATAT+AGG + Chr4:83045670-83045689 None:intergenic 15.0%
!!! TTTCTTTTATGATTATATTG+TGG - Chr4:83045537-83045556 MsG0480023274.01.T01:CDS 15.0%
!! AACATCAAAGTAGTTATAAT+TGG - Chr4:83045002-83045021 MsG0480023274.01.T01:CDS 20.0%
!! AAGTTCAAATGAAAATACAA+TGG - Chr4:83048721-83048740 MsG0480023274.01.T01:intron 20.0%
!! AATAACTATTACTATTGAGT+AGG + Chr4:83047435-83047454 None:intergenic 20.0%
!! AATTCGTAGTAGAATATAAA+AGG + Chr4:83046681-83046700 None:intergenic 20.0%
!! AGTTCAAATGAAAATACAAT+GGG - Chr4:83048722-83048741 MsG0480023274.01.T01:intron 20.0%
!! ATTGAAACAAAATGAAAGAA+GGG + Chr4:83045242-83045261 None:intergenic 20.0%
!! CAAATGTTATACAATTATGA+CGG + Chr4:83045381-83045400 None:intergenic 20.0%
!! CAATTATCGGTATAATTATT+CGG - Chr4:83046096-83046115 MsG0480023274.01.T01:intron 20.0%
!! CATTTACTCAAAATTATTAG+TGG - Chr4:83044830-83044849 MsG0480023274.01.T01:intron 20.0%
!! GAAAAATAAACAGAATTCAA+AGG + Chr4:83046380-83046399 None:intergenic 20.0%
!! TACGCATATTAAATAAAAAG+CGG + Chr4:83047804-83047823 None:intergenic 20.0%
!! TGATATTTCAATACTAATTG+TGG - Chr4:83044885-83044904 MsG0480023274.01.T01:intron 20.0%
!!! ATAGTTTTATACCACAAAAA+TGG + Chr4:83046649-83046668 None:intergenic 20.0%
!!! CTTAACTTATTGAAAGATTT+TGG - Chr4:83047880-83047899 MsG0480023274.01.T01:intron 20.0%
!!! GATAATTTAGTTCTAATAGA+TGG + Chr4:83048945-83048964 None:intergenic 20.0%
!!! GATTTCATTTATTTTCACTA+CGG + Chr4:83046793-83046812 None:intergenic 20.0%
!!! TAGTTTTATACCACAAAAAT+GGG + Chr4:83046648-83046667 None:intergenic 20.0%
!!! TTATTATTTTTCCTTGTTTC+AGG - Chr4:83046950-83046969 MsG0480023274.01.T01:intron 20.0%
! AAAATGGGAAGATAAATCTA+TGG + Chr4:83046633-83046652 None:intergenic 25.0%
! AATATAATTATTCTCCCTAC+AGG + Chr4:83049049-83049068 None:intergenic 25.0%
! AGTAGTATATCTTAACTGTA+TGG - Chr4:83046846-83046865 MsG0480023274.01.T01:intron 25.0%
! AGTGTGATATAAATTCTGAT+AGG - Chr4:83048254-83048273 MsG0480023274.01.T01:intron 25.0%
! ATCAAAACCATGTTTAACAA+AGG - Chr4:83044664-83044683 MsG0480023274.01.T01:intron 25.0%
! ATTGCTTGAATTTGTATACT+TGG - Chr4:83046015-83046034 MsG0480023274.01.T01:intron 25.0%
! CTAGAAAATACTGAATGTAT+AGG - Chr4:83048907-83048926 MsG0480023274.01.T01:intron 25.0%
! GAAACAAAATATAGCAAATG+AGG + Chr4:83046460-83046479 None:intergenic 25.0%
! GATTGAAACAAAATGAAAGA+AGG + Chr4:83045243-83045262 None:intergenic 25.0%
! GCAAGAATGACAAAATATAT+AGG + Chr4:83049096-83049115 None:intergenic 25.0%
! GGAAAAATAATAAGCAGTTA+AGG + Chr4:83046943-83046962 None:intergenic 25.0%
! GTATAAGATCTATATGTCAT+TGG - Chr4:83046534-83046553 MsG0480023274.01.T01:intron 25.0%
! GTGTGATATAAATTCTGATA+GGG - Chr4:83048255-83048274 MsG0480023274.01.T01:intron 25.0%
! TCATATTTAACATATGACTG+TGG - Chr4:83047091-83047110 MsG0480023274.01.T01:intron 25.0%
! TGTAACATTTCCATTACTAT+TGG + Chr4:83046827-83046846 None:intergenic 25.0%
! TTAAAGCTTACCAATAGTAA+TGG - Chr4:83046814-83046833 MsG0480023274.01.T01:CDS 25.0%
! TTCAATCATAAAAGTCGTTT+AGG - Chr4:83045256-83045275 MsG0480023274.01.T01:intron 25.0%
! TTGTTAATGAAACCATGTTT+AGG - Chr4:83048525-83048544 MsG0480023274.01.T01:intron 25.0%
!! AACATTTCAAGTATATAGCA+AGG + Chr4:83045096-83045115 None:intergenic 25.0%
!! ACATTTCAAGTATATAGCAA+GGG + Chr4:83045095-83045114 None:intergenic 25.0%
!! CTTTTATGATTATATTGTGG+TGG - Chr4:83045540-83045559 MsG0480023274.01.T01:CDS 25.0%
!! GTATTTTCATTTGAACTTCT+AGG + Chr4:83048719-83048738 None:intergenic 25.0%
!! TAAAGAATTTGCTTTCATGA+AGG - Chr4:83045057-83045076 MsG0480023274.01.T01:intron 25.0%
!! TAGATTTTGAATTGTGGTTA+TGG - Chr4:83045714-83045733 MsG0480023274.01.T01:CDS 25.0%
!!! ACAGTTTTTGAGACAATTAT+CGG - Chr4:83046083-83046102 MsG0480023274.01.T01:intron 25.0%
!!! ACTAGTTCTGAAAAACAAAA+AGG + Chr4:83045600-83045619 None:intergenic 25.0%
!!! AGATGACTTTTTCTCTAATA+AGG - Chr4:83048423-83048442 MsG0480023274.01.T01:intron 25.0%
!!! ATAACATTTGATTTGATCTG+TGG - Chr4:83045391-83045410 MsG0480023274.01.T01:intron 25.0%
!!! ATGCCACAATTTTTAATTCT+AGG - Chr4:83045573-83045592 MsG0480023274.01.T01:intron 25.0%
!!! TCTTTAAGTTTTTCAGAAAG+AGG - Chr4:83046998-83047017 MsG0480023274.01.T01:intron 25.0%
!!! TGTTTAGTTTTAGATAACGA+AGG - Chr4:83045674-83045693 MsG0480023274.01.T01:intron 25.0%
!!! TTTGTTAAACATGGTTTTGA+TGG + Chr4:83044665-83044684 None:intergenic 25.0%
AAAGACACCTTTGTTAAACA+TGG + Chr4:83044674-83044693 None:intergenic 30.0%
AAGGGATGTAATAGCATATA+AGG + Chr4:83046361-83046380 None:intergenic 30.0%
AATGATCATCATGTCAATGT+AGG + Chr4:83044780-83044799 None:intergenic 30.0%
AGAGAAAAAGTCATCTCTAT+TGG + Chr4:83048419-83048438 None:intergenic 30.0%
AGGAATTCTCAAAAAGACAA+GGG - Chr4:83048796-83048815 MsG0480023274.01.T01:intron 30.0%
AGTGTAAAATATGTGGAAGT+GGG + Chr4:83045981-83046000 None:intergenic 30.0%
ATAAATTCTGATAGGGAAGA+TGG - Chr4:83048262-83048281 MsG0480023274.01.T01:intron 30.0%
ATCTATCTGCAGTTTATTGA+AGG - Chr4:83048223-83048242 MsG0480023274.01.T01:intron 30.0%
ATGAACACAATTAGTCAACT+GGG - Chr4:83045299-83045318 MsG0480023274.01.T01:intron 30.0%
ATGTAAAAGCAAGGATCAAA+TGG + Chr4:83045453-83045472 None:intergenic 30.0%
ATTGTTGTGTACACAATCAT+TGG + Chr4:83047778-83047797 None:intergenic 30.0%
CAAAAGCAGTGTAAAATATG+TGG + Chr4:83045988-83046007 None:intergenic 30.0%
CATCATATTTAGAAGAGTCA+TGG + Chr4:83044606-83044625 None:intergenic 30.0%
CATGACTCTTCTAAATATGA+TGG - Chr4:83044604-83044623 MsG0480023274.01.T01:CDS 30.0%
CATTTGTGGAAAATCAATCA+CGG + Chr4:83046291-83046310 None:intergenic 30.0%
CTAGCTATGAAGTTACATAT+AGG - Chr4:83044930-83044949 MsG0480023274.01.T01:intron 30.0%
CTATTACTATTGAGTAGGTT+AGG + Chr4:83047430-83047449 None:intergenic 30.0%
CTGTTTGTGATTTCTATCAA+TGG + Chr4:83047299-83047318 None:intergenic 30.0%
CTTAACTGTATGGTATCAAT+AGG - Chr4:83046856-83046875 MsG0480023274.01.T01:intron 30.0%
GAACATCTTGAAATCAAAGA+TGG + Chr4:83046899-83046918 None:intergenic 30.0%
GGACCTAGAATTAAAAATTG+TGG + Chr4:83045579-83045598 None:intergenic 30.0%
GTTAGTGCTTTGTAGAATAT+CGG - Chr4:83044862-83044881 MsG0480023274.01.T01:intron 30.0%
GTTGTCATAAAAGAGATACA+GGG - Chr4:83048373-83048392 MsG0480023274.01.T01:intron 30.0%
TACAGCATTCCTTGTTAATA+AGG + Chr4:83048691-83048710 None:intergenic 30.0%
TACTGAATGTATAGGTTCAA+CGG - Chr4:83048915-83048934 MsG0480023274.01.T01:intron 30.0%
TAGGAATTCTCAAAAAGACA+AGG - Chr4:83048795-83048814 MsG0480023274.01.T01:intron 30.0%
TATATTAAAACATGCAGCTG+AGG + Chr4:83044748-83044767 None:intergenic 30.0%
TATGAAGTTACATATAGGCT+TGG - Chr4:83044935-83044954 MsG0480023274.01.T01:intron 30.0%
TGTTGTCATAAAAGAGATAC+AGG - Chr4:83048372-83048391 MsG0480023274.01.T01:intron 30.0%
TTCATTTCAGAATTGTCATG+AGG + Chr4:83046437-83046456 None:intergenic 30.0%
TTGTTGTGTACACAATCATT+GGG + Chr4:83047777-83047796 None:intergenic 30.0%
TTTATGACAACAAAAGCTGA+TGG + Chr4:83048364-83048383 None:intergenic 30.0%
! ATTTTCAGAGATGATGCATA+GGG + Chr4:83045501-83045520 None:intergenic 30.0%
! CACATATTTTACACTGCTTT+TGG - Chr4:83045986-83046005 MsG0480023274.01.T01:intron 30.0%
! TAAGTCTTTTGTTCTTAAGC+TGG - Chr4:83045918-83045937 MsG0480023274.01.T01:intron 30.0%
! TATTTTCAGAGATGATGCAT+AGG + Chr4:83045502-83045521 None:intergenic 30.0%
! TGAAACCATGTTTAGGATAA+AGG - Chr4:83048532-83048551 MsG0480023274.01.T01:intron 30.0%
! TTTCTAGAAGTCAATCACAT+TGG + Chr4:83048894-83048913 None:intergenic 30.0%
!! AGTTAGCAAAGATAGTTTTG+TGG + Chr4:83045637-83045656 None:intergenic 30.0%
!! CAAGTTTTTCAAAACCTTGT+AGG + Chr4:83044563-83044582 None:intergenic 30.0%
!! GATTTATCTTCCCATTTTTG+TGG - Chr4:83046635-83046654 MsG0480023274.01.T01:intron 30.0%
!! TGGCTTTAGTAAAAAAGATG+AGG - Chr4:83048095-83048114 MsG0480023274.01.T01:intron 30.0%
!! TGTTGATTCTTTGCATTTGT+CGG - Chr4:83048324-83048343 MsG0480023274.01.T01:intron 30.0%
!! TTTATTTTCACTACGGCATA+CGG + Chr4:83046786-83046805 None:intergenic 30.0%
AAGATGAGGAAGATATTCAG+AGG - Chr4:83048109-83048128 MsG0480023274.01.T01:intron 35.0%
AATTCTCAAAAAGACAAGGG+TGG - Chr4:83048799-83048818 MsG0480023274.01.T01:intron 35.0%
AATTGTGGCATTTGTGATGA+TGG - Chr4:83044900-83044919 MsG0480023274.01.T01:intron 35.0%
AGATGAGGAAGATATTCAGA+GGG - Chr4:83048110-83048129 MsG0480023274.01.T01:intron 35.0%
AGCATTCCTTGTTAATAAGG+AGG + Chr4:83048688-83048707 None:intergenic 35.0%
AGCTCTTTACTTGAAGGATA+AGG + Chr4:83047266-83047285 None:intergenic 35.0%
AGGTTTACACAAGAAGAAAG+AGG + Chr4:83047726-83047745 None:intergenic 35.0%
ATGAACGAGATGTAAAAGCA+AGG + Chr4:83045462-83045481 None:intergenic 35.0%
ATTCCTTGTTAATAAGGAGG+AGG + Chr4:83048685-83048704 None:intergenic 35.0%
ATTGTCTCAAAAACTGTCTC+TGG + Chr4:83046080-83046099 None:intergenic 35.0%
CAGTGTAAAATATGTGGAAG+TGG + Chr4:83045982-83046001 None:intergenic 35.0%
CATAGAAGCTCTACAATGAA+GGG - Chr4:83047358-83047377 MsG0480023274.01.T01:intron 35.0%
CATATGTATAGACTGCACTT+CGG - Chr4:83048980-83048999 MsG0480023274.01.T01:intron 35.0%
CATGAACACAATTAGTCAAC+TGG - Chr4:83045298-83045317 MsG0480023274.01.T01:intron 35.0%
CATGTCCTTTATCCTAAACA+TGG + Chr4:83048540-83048559 None:intergenic 35.0%
GAAGGATTACAACTAAGAGA+AGG + Chr4:83048154-83048173 None:intergenic 35.0%
GAGTTTGATGCATGATATCA+AGG - Chr4:83047203-83047222 MsG0480023274.01.T01:intron 35.0%
GATAAATGTTTCACGATCGA+AGG + Chr4:83048172-83048191 None:intergenic 35.0%
GATAACGACGATTCTGATAA+AGG - Chr4:83047994-83048013 MsG0480023274.01.T01:intron 35.0%
GCTCTTTACTTGAAGGATAA+GGG + Chr4:83047265-83047284 None:intergenic 35.0%
GGTTTACACAAGAAGAAAGA+GGG + Chr4:83047725-83047744 None:intergenic 35.0%
TAGGTCATCTCACAATTCTA+AGG - Chr4:83048822-83048841 MsG0480023274.01.T01:intron 35.0%
TATAGAGTTCATGAAGCTGT+AGG + Chr4:83047601-83047620 None:intergenic 35.0%
TATCGGTATAATTATTCGGC+TGG - Chr4:83046100-83046119 MsG0480023274.01.T01:intron 35.0%
TCATCATGTCAATGTAGGTA+CGG + Chr4:83044775-83044794 None:intergenic 35.0%
TCTTCAATAGACATTAGCAC+TGG - Chr4:83048045-83048064 MsG0480023274.01.T01:intron 35.0%
TGAACCTAAAGCACAAAAGA+GGG + Chr4:83047948-83047967 None:intergenic 35.0%
TGACATGATTACACAATGTC+CGG + Chr4:83045192-83045211 None:intergenic 35.0%
TGCATGCATTGTTTAGACTT+TGG - Chr4:83049113-83049132 MsG0480023274.01.T01:CDS 35.0%
TGGGAAGATAAATCTATGGA+CGG + Chr4:83046629-83046648 None:intergenic 35.0%
TGTTGTGTACACAATCATTG+GGG + Chr4:83047776-83047795 None:intergenic 35.0%
TTAAATCGTCTGCTTCATTC+AGG + Chr4:83048303-83048322 None:intergenic 35.0%
TTGAACCTAAAGCACAAAAG+AGG + Chr4:83047949-83047968 None:intergenic 35.0%
! AAGATTTTGGATCTTGTCTG+TGG - Chr4:83047893-83047912 MsG0480023274.01.T01:intron 35.0%
! ATTTCTATCAATGGCCTTAG+AGG + Chr4:83047290-83047309 None:intergenic 35.0%
! GTAATCATGTCACTTGTTCA+AGG - Chr4:83045200-83045219 MsG0480023274.01.T01:CDS 35.0%
! TGGTTTGTGAACTACTCTTA+GGG - Chr4:83045338-83045357 MsG0480023274.01.T01:intron 35.0%
! TTATTTTCACTACGGCATAC+GGG + Chr4:83046785-83046804 None:intergenic 35.0%
! TTCTAAAAAGCTAGCTCAAG+TGG + Chr4:83047180-83047199 None:intergenic 35.0%
! TTCTTCGAGTTTAATACTCG+AGG - Chr4:83049208-83049227 MsG0480023274.01.T01:CDS 35.0%
!! AAAAAAGAGACCTTTGAAGC+AGG - Chr4:83048568-83048587 MsG0480023274.01.T01:intron 35.0%
!! AAAGGTGTCTTTGTTTCTGT+TGG - Chr4:83044682-83044701 MsG0480023274.01.T01:intron 35.0%
!! CGTGATTGATTTTCCACAAA+TGG - Chr4:83046289-83046308 MsG0480023274.01.T01:intron 35.0%
!!! TTGTTCTTAAGCTGGCTTTT+TGG - Chr4:83045926-83045945 MsG0480023274.01.T01:intron 35.0%
AAATATGTGGAAGTGGGTAG+TGG + Chr4:83045975-83045994 None:intergenic 40.0%
ACACAATTAGTCAACTGGGA+CGG - Chr4:83045303-83045322 MsG0480023274.01.T01:intron 40.0%
ACATATGACCAACTTCTGGA+AGG + Chr4:83047746-83047765 None:intergenic 40.0%
AGAACAAAACCAGAAGACCA+TGG + Chr4:83047229-83047248 None:intergenic 40.0%
AGAGGAAGCTCTTTACTTGA+AGG + Chr4:83047272-83047291 None:intergenic 40.0%
AGCAGCTGGTGAGATTATAT+GGG - Chr4:83048859-83048878 MsG0480023274.01.T01:intron 40.0%
AGGAAGATATTCAGAGGGTA+TGG - Chr4:83048115-83048134 MsG0480023274.01.T01:intron 40.0%
ATAAAAGAGATACAGGGCTG+TGG - Chr4:83048379-83048398 MsG0480023274.01.T01:intron 40.0%
ATTACACAATGTCCGGAACT+GGG + Chr4:83045185-83045204 None:intergenic 40.0%
CAAAAGAGGGACTAACTATG+AGG + Chr4:83047935-83047954 None:intergenic 40.0%
CAAACCAGATGAAGTTTCGA+AGG + Chr4:83049289-83049308 None:intergenic 40.0%
CAAGTAAAGAGCTTCCTCTA+AGG - Chr4:83047273-83047292 MsG0480023274.01.T01:intron 40.0%
CAAGTAAGCACAGGTTATAC+AGG + Chr4:83046177-83046196 None:intergenic 40.0%
CTTCCTCCTCCTTATTAACA+AGG - Chr4:83048679-83048698 MsG0480023274.01.T01:intron 40.0%
CTTCGAAACTTCATCTGGTT+TGG - Chr4:83049287-83049306 MsG0480023274.01.T01:CDS 40.0%
GAAGGAAGAAACTTGCATCT+AGG - Chr4:83048776-83048795 MsG0480023274.01.T01:intron 40.0%
GAGAAAATCGTAACCAAGGT+AGG + Chr4:83044641-83044660 None:intergenic 40.0%
GAGAGAATATCTCTCTGGTT+AGG + Chr4:83047408-83047427 None:intergenic 40.0%
GCAGTTTATTGAAGGTGAGA+TGG - Chr4:83048231-83048250 MsG0480023274.01.T01:intron 40.0%
GCATAGAAGCTCTACAATGA+AGG - Chr4:83047357-83047376 MsG0480023274.01.T01:intron 40.0%
GTTAGGAGAGAATATCTCTC+TGG + Chr4:83047413-83047432 None:intergenic 40.0%
TAAAAGAGATACAGGGCTGT+GGG - Chr4:83048380-83048399 MsG0480023274.01.T01:intron 40.0%
TAATGCTGACAAGTAAGCAC+AGG + Chr4:83046186-83046205 None:intergenic 40.0%
TACACAAGAAGAAAGAGGGT+GGG + Chr4:83047721-83047740 None:intergenic 40.0%
TGAAAACAGCGGATCTGAAA+AGG - Chr4:83048591-83048610 MsG0480023274.01.T01:CDS 40.0%
TGAAAAGGAGGCAAACAACA+CGG - Chr4:83048606-83048625 MsG0480023274.01.T01:CDS 40.0%
TGTGTAAACCTTCCAGAAGT+TGG - Chr4:83047735-83047754 MsG0480023274.01.T01:intron 40.0%
TGTTCCTTCGAAACTTCATC+TGG - Chr4:83049282-83049301 MsG0480023274.01.T01:CDS 40.0%
TGTTTGTGAATCTCAGTGCT+TGG - Chr4:83047050-83047069 MsG0480023274.01.T01:intron 40.0%
TTACACAAGAAGAAAGAGGG+TGG + Chr4:83047722-83047741 None:intergenic 40.0%
TTGTGAACTACTCTTAGGGA+TGG - Chr4:83045342-83045361 MsG0480023274.01.T01:intron 40.0%
! AAGATATTCAGAGGGTATGG+TGG - Chr4:83048118-83048137 MsG0480023274.01.T01:intron 40.0%
! ATTCTTTTCCAACACCGATC+TGG + Chr4:83044711-83044730 None:intergenic 40.0%
! CGATCAAAGTACCTGAAACA+AGG + Chr4:83046964-83046983 None:intergenic 40.0%
! GATACAGAACTTGCTTCTAG+TGG - Chr4:83048075-83048094 MsG0480023274.01.T01:intron 40.0%
! GATTTTGCATCAGCTCGTAA+GGG - Chr4:83048754-83048773 MsG0480023274.01.T01:intron 40.0%
! GTGGTTTGTGAACTACTCTT+AGG - Chr4:83045337-83045356 MsG0480023274.01.T01:intron 40.0%
! TAGTCCCTCTTTTGTGCTTT+AGG - Chr4:83047941-83047960 MsG0480023274.01.T01:intron 40.0%
! TGATTTTGCATCAGCTCGTA+AGG - Chr4:83048753-83048772 MsG0480023274.01.T01:intron 40.0%
! TTCCAGAAGTTGGTCATATG+TGG - Chr4:83047745-83047764 MsG0480023274.01.T01:intron 40.0%
! TTTGAAGCAGGTGAAAACAG+CGG - Chr4:83048580-83048599 MsG0480023274.01.T01:intron 40.0%
!! ACTTCATCTGGTTTGGCTTA+AGG - Chr4:83049294-83049313 MsG0480023274.01.T01:CDS 40.0%
!! ATCGGTGTTGGAAAAGAATC+TGG - Chr4:83044712-83044731 MsG0480023274.01.T01:intron 40.0%
!! GATAGATTTGAAGAGCGTTG+AGG + Chr4:83048210-83048229 None:intergenic 40.0%
!!! CTTAAGCTGGCTTTTTGGTT+TGG - Chr4:83045931-83045950 MsG0480023274.01.T01:intron 40.0%
!!! GAGTTGCTTTTCTTCCTGTA+GGG - Chr4:83049032-83049051 MsG0480023274.01.T01:intron 40.0%
!!! TGAGTTGCTTTTCTTCCTGT+AGG - Chr4:83049031-83049050 MsG0480023274.01.T01:intron 40.0%
AAACAGCGGATCTGAAAAGG+AGG - Chr4:83048594-83048613 MsG0480023274.01.T01:CDS 45.0%
AATCGTAACCAAGGTAGGTG+AGG + Chr4:83044636-83044655 None:intergenic 45.0%
ACACAAGAAGAAAGAGGGTG+GGG + Chr4:83047720-83047739 None:intergenic 45.0%
ATACGCCTGACAGTGGAAAT+CGG + Chr4:83049176-83049195 None:intergenic 45.0%
ATATCAAGGCCATGGTCTTC+TGG - Chr4:83047217-83047236 MsG0480023274.01.T01:intron 45.0%
ATTATTCGGCTGGCAGAACA+TGG - Chr4:83046110-83046129 MsG0480023274.01.T01:intron 45.0%
ATTCGGACAATGAGTTCAGC+AGG + Chr4:83044517-83044536 None:intergenic 45.0%
CAGGTACTTTGATCGTGATG+TGG - Chr4:83046969-83046988 MsG0480023274.01.T01:intron 45.0%
CATGCTTGAGACAAGCGATT+CGG + Chr4:83044534-83044553 None:intergenic 45.0%
CGAAGGAACAGTTCAACACT+TGG + Chr4:83049272-83049291 None:intergenic 45.0%
CTCAAAAAGACAAGGGTGGT+AGG - Chr4:83048803-83048822 MsG0480023274.01.T01:intron 45.0%
CTCAAATGCAAATGAGCAGC+TGG - Chr4:83048845-83048864 MsG0480023274.01.T01:intron 45.0%
CTTTAAGTGCAGCAACTGCA+AGG + Chr4:83045042-83045061 None:intergenic 45.0%
GAGCAGCTGGTGAGATTATA+TGG - Chr4:83048858-83048877 MsG0480023274.01.T01:intron 45.0%
GATAAAGGAAGAGACGAAGC+TGG - Chr4:83048009-83048028 MsG0480023274.01.T01:intron 45.0%
GATGCATGATATCAAGGCCA+TGG - Chr4:83047209-83047228 MsG0480023274.01.T01:intron 45.0%
GATTACACAATGTCCGGAAC+TGG + Chr4:83045186-83045205 None:intergenic 45.0%
GGACTAACTATGAGGACAAC+TGG + Chr4:83047927-83047946 None:intergenic 45.0%
GTCCACATATGACCAACTTC+TGG + Chr4:83047750-83047769 None:intergenic 45.0%
GTTCAGCAGGTACAATGTCA+TGG + Chr4:83044504-83044523 None:intergenic 45.0%
TATGCTTATACGCCTGACAG+TGG + Chr4:83049183-83049202 None:intergenic 45.0%
TGGCGAGAAAATCGTAACCA+AGG + Chr4:83044645-83044664 None:intergenic 45.0%
TGTGACACAGACACCATTTG+TGG + Chr4:83046305-83046324 None:intergenic 45.0%
TTCTTTGCATTTGTCGGACG+AGG - Chr4:83048330-83048349 MsG0480023274.01.T01:intron 45.0%
! AGTGCTTGGTTTGAGGAGAA+TGG - Chr4:83047064-83047083 MsG0480023274.01.T01:intron 45.0%
! GAATCTCAGTGCTTGGTTTG+AGG - Chr4:83047057-83047076 MsG0480023274.01.T01:intron 45.0%
! GTGCTTGGTTTGAGGAGAAT+GGG - Chr4:83047065-83047084 MsG0480023274.01.T01:intron 45.0%
! TGCTTGGTTTGAGGAGAATG+GGG - Chr4:83047066-83047085 MsG0480023274.01.T01:intron 45.0%
! TGGGACGGTGTTAGATATTG+TGG - Chr4:83045318-83045337 MsG0480023274.01.T01:intron 45.0%
!! GCTGTTTTCACCTGCTTCAA+AGG + Chr4:83048581-83048600 None:intergenic 45.0%
!! TGAAAGAAGGGCACTTACAG+AGG + Chr4:83045230-83045249 None:intergenic 45.0%
!! AAAAAAAATAAAAAAATCAT+CGG + Chr4:83048452-83048471 None:intergenic 5.0%
!! TATATTTCATAATTTAATTA+GGG + Chr4:83045796-83045815 None:intergenic 5.0%
!! TTATATTTCATAATTTAATT+AGG + Chr4:83045797-83045816 None:intergenic 5.0%
AGATACAGGGCTGTGGGAAA+TGG - Chr4:83048386-83048405 MsG0480023274.01.T01:intron 50.0%
ATCGCTTGTCTCAAGCATGG+TGG - Chr4:83044535-83044554 MsG0480023274.01.T01:CDS 50.0%
CAAACATGGCTTCCCAGTTC+CGG - Chr4:83045170-83045189 MsG0480023274.01.T01:intron 50.0%
CGAATCGCTTGTCTCAAGCA+TGG - Chr4:83044532-83044551 MsG0480023274.01.T01:CDS 50.0%
GACATGTCCATTGCTTGAGC+AGG - Chr4:83045140-83045159 MsG0480023274.01.T01:intron 50.0%
GAGCAGGCTTTGCACAAACA+TGG - Chr4:83045156-83045175 MsG0480023274.01.T01:intron 50.0%
GTTCTGCAAATGCAGCGTTC+AGG - Chr4:83046037-83046056 MsG0480023274.01.T01:intron 50.0%
GTTTCTGTTGGTCGCCAGAT+CGG - Chr4:83044694-83044713 MsG0480023274.01.T01:intron 50.0%
TGCAAAGCCTGCTCAAGCAA+TGG + Chr4:83045150-83045169 None:intergenic 50.0%
TGGTTAGGAGTCTCTGACTC+TGG + Chr4:83047393-83047412 None:intergenic 50.0%
TTGCATCAGCTCGTAAGGGA+AGG - Chr4:83048758-83048777 MsG0480023274.01.T01:intron 50.0%
AGAAAGAGGGTGGGGTCAAG+AGG + Chr4:83047712-83047731 None:intergenic 55.0%
CAAGCATGGTGGCACCTACA+AGG - Chr4:83044546-83044565 MsG0480023274.01.T01:CDS 55.0%
!! GACCACCGATTTCCACTGTC+AGG - Chr4:83049168-83049187 MsG0480023274.01.T01:CDS 55.0%
CGCCTGACAGTGGAAATCGG+TGG + Chr4:83049173-83049192 None:intergenic 60.0%
GGCTTTCGCCTCACCTACCT+TGG - Chr4:83044625-83044644 MsG0480023274.01.T01:intron 60.0%
GTTGGTCGCCAGATCGGTGT+TGG - Chr4:83044700-83044719 MsG0480023274.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 83044493 83049322 83044493 ID=MsG0480023274.01;Name=MsG0480023274.01
Chr4 mRNA 83044493 83049322 83044493 ID=MsG0480023274.01.T01;Parent=MsG0480023274.01;Name=MsG0480023274.01.T01;_AED=0.31;_eAED=0.33;_QI=0|0|0|0.87|1|1|8|0|316
Chr4 exon 83049082 83049322 83049082 ID=MsG0480023274.01.T01:exon:5823;Parent=MsG0480023274.01.T01
Chr4 exon 83048584 83048653 83048584 ID=MsG0480023274.01.T01:exon:5822;Parent=MsG0480023274.01.T01
Chr4 exon 83046796 83046843 83046796 ID=MsG0480023274.01.T01:exon:5821;Parent=MsG0480023274.01.T01
Chr4 exon 83045684 83045852 83045684 ID=MsG0480023274.01.T01:exon:5820;Parent=MsG0480023274.01.T01
Chr4 exon 83045464 83045580 83045464 ID=MsG0480023274.01.T01:exon:5819;Parent=MsG0480023274.01.T01
Chr4 exon 83045188 83045268 83045188 ID=MsG0480023274.01.T01:exon:5818;Parent=MsG0480023274.01.T01
Chr4 exon 83044949 83045040 83044949 ID=MsG0480023274.01.T01:exon:5817;Parent=MsG0480023274.01.T01
Chr4 exon 83044493 83044625 83044493 ID=MsG0480023274.01.T01:exon:5816;Parent=MsG0480023274.01.T01
Chr4 CDS 83049082 83049322 83049082 ID=MsG0480023274.01.T01:cds;Parent=MsG0480023274.01.T01
Chr4 CDS 83048584 83048653 83048584 ID=MsG0480023274.01.T01:cds;Parent=MsG0480023274.01.T01
Chr4 CDS 83046796 83046843 83046796 ID=MsG0480023274.01.T01:cds;Parent=MsG0480023274.01.T01
Chr4 CDS 83045684 83045852 83045684 ID=MsG0480023274.01.T01:cds;Parent=MsG0480023274.01.T01
Chr4 CDS 83045464 83045580 83045464 ID=MsG0480023274.01.T01:cds;Parent=MsG0480023274.01.T01
Chr4 CDS 83045188 83045268 83045188 ID=MsG0480023274.01.T01:cds;Parent=MsG0480023274.01.T01
Chr4 CDS 83044949 83045040 83044949 ID=MsG0480023274.01.T01:cds;Parent=MsG0480023274.01.T01
Chr4 CDS 83044493 83044625 83044493 ID=MsG0480023274.01.T01:cds;Parent=MsG0480023274.01.T01
Gene Sequence

>MsG0480023274.01.T01

ATGAGAAACCATGACATTGTACCTGCTGAACTCATTGTCCGAATCGCTTGTCTCAAGCATGGTGGCACCTACAAGGTTTTGAAAAACTTGCTTAAACATAAGCTCTTGCACCATGACTCTTCTAAATATGATGGCTTTCGCCTCACCTACCTTGGTTACGATTTTCTCGCCATCAAAACCATGTTTAACAAAGGTGTCTTTGTTTCTGTTGGTCGCCAGATCGGTGTTGGAAAAGAATCTGGCTTTGCACAAACATGGCTTCCCAGTTCCGGACATTGTGTAATCATGTCACTTGTTCAAGGTTATCCTCTGTACTTTGATCGTGATGTGGAATGTATCTTTAAGTTTTTCAGAAAGAGGTTCAATATTTCTTTTCAAGAAAGAATAGATGATAACGACGATTCTGATAAAGGAAGAGACGAAGCTGGAAAACTCTCTTTTTCTTCAATAGACATTAGCACTGGTTTTCTAGATACAGAACTTGCTTCTAGTGGCTTTAGTAAAAAAGATGAGGAAGATATTCAGAGGTTTATTGAAGGTGAGATGGAGTGTGATATAAATTCTGATAGGGAAGATGGTGACTTAATGAGAAACCTGAATGAAGCAGACGATTTAAATGTTGATTCTTTGCATTTGTCGGACGAGGATAAAGGACATGAAAGTCATAAAAAAGAGACCTTTGAAGCAGGTGAAAACAGCGGATCTGAAAAGGAGGCAAACAACACGGGAAGGAAGAAACTTGCATCTAGGAATTCTCAAAAAGACAAGGGTGGTAGGTCATCTCACAATTCTAAGGCTCAAATGCAAATGAGCAGCTGGCGTATAAGCATAGTGTTTTCTTCGAGTTTAATACTCGAGGATACTGCTGCTTTCGAATTACAATTACAAGACGTTTATCCAAGTGTTGAACTGTTCCTTCGAAACTTCATCTGGTTTGGCTTAAGGCCCTAA
Protein sequence

>MsG0480023274.01.T01

MRNHDIVPAELIVRIACLKHGGTYKVLKNLLKHKLLHHDSSKYDGFRLTYLGYDFLAIKTMFNKGVFVSVGRQIGVGKESGFAQTWLPSSGHCVIMSLVQGYPLYFDRDVECIFKFFRKRFNISFQERIDDNDDSDKGRDEAGKLSFSSIDISTGFLDTELASSGFSKKDEEDIQRFIEGEMECDINSDREDGDLMRNLNEADDLNVDSLHLSDEDKGHESHKKETFEAGENSGSEKEANNTGRKKLASRNSQKDKGGRSSHNSKAQMQMSSWRISIVFSSSLILEDTAAFELQLQDVYPSVELFLRNFIWFGLRP*