AlfalfaGEDB | MsG0380014607.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014607.01

KEGG: K11884
GO: GO:0003676 GO:0003723
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014607.01.T01	XP_003600436.2	99.537	216	1	0	1	216	1	216	1.10E-156	442

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014607.01.T01	A7RP64	60.476	210	78	1	7	216	34	238	2.52E-90	268

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014607.01.T01	I3S062	99.537	216	1	0	1	216	1	216	5.25e-157	442

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180002214.01	MsG0380014607.01	-0.823041	1.714413e-53	1.459845e-50
MsG0180002426.01	MsG0380014607.01	-0.809709	1.654893e-50	9.786880e-48
MsG0180006227.01	MsG0380014607.01	-0.804663	1.938660e-49	1.005407e-46
MsG0380014607.01	MsG0480021530.01	0.806100	9.689941e-50	5.214298e-47
MsG0380014607.01	MsG0780036004.01	-0.819453	1.152281e-52	8.871032e-50
MsG0380014607.01	MsG0780037458.01	-0.802838	4.638632e-49	2.295658e-46
MsG0380014607.01	MsG0780039838.01	-0.803778	2.963616e-49	1.502333e-46
MsG0380014607.01	MsG0780039839.01	-0.801632	8.217048e-49	3.943296e-46
MsG0380014607.01	MsG0780041637.01	-0.810882	9.238718e-51	5.635726e-48
MsG0380014607.01	MsG0880046947.01	0.841670	4.127997e-58	6.109088e-55

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PPI

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Gene1	Gene2	Type
MsG0280011289.01	MsG0380014607.01	PPI
MsG0380014539.01	MsG0380014607.01	PPI
MsG0380014541.01	MsG0380014607.01	PPI
MsG0380014607.01	MsG0480023274.01	PPI
MsG0380014607.01	MsG0780037159.01	PPI
MsG0380014607.01	MsG0280006514.01	PPI
MsG0380014607.01	MsG0280006639.01	PPI
MsG0380014607.01	MsG0480023627.01	PPI
MsG0380014607.01	MsG0480023627.01	PPI
MsG0480023309.01	MsG0380014607.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014607.01.T01	MTR_3g061130	99.537	216	1	0	1	216	1	216	1.33e-160	442
MsG0380014607.01.T01	MTR_5g088410	60.930	215	51	5	3	216	6	188	1.13e-75	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014607.01.T01	AT3G13230	75.472	212	52	0	3	214	4	215	7.30e-123	347
MsG0380014607.01.T01	AT3G13230	75.472	212	52	0	3	214	4	215	7.30e-123	347

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Find 47 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGATGTTAAGACTCTTCG+AGG	0.505057	3:+57143597	MsG0380014607.01.T01:CDS
ACCTCTCAAGAAAGTTTGGA+TGG	0.563023	3:+57143359	MsG0380014607.01.T01:CDS
AGAAGTAACGGCTCTCAACT+TGG	0.482912	3:-57143817	None:intergenic
AGAGGCTCAAACTTTGGCTT+TGG	0.356673	3:-57143267	None:intergenic
AGAGGTGTATAACGATGTGG+TGG	0.702702	3:-57143342	None:intergenic
AGATAATCTTCCAATAGCAC+GGG	0.591480	3:-57143631	None:intergenic
AGATCCCAGAATGTGAATTT+TGG	0.238915	3:-57143721	None:intergenic
AGTTGAGAGCCGTTACTTCT+AGG	0.295245	3:+57143820	MsG0380014607.01.T01:CDS
ATACACCTCTCAAGAAAGTT+TGG	0.369468	3:+57143355	MsG0380014607.01.T01:CDS
ATTGGAAGATTATCTGGAAA+AGG	0.469137	3:+57143639	MsG0380014607.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGGAAGATTATCTGGAAA+AGG	+	Chr3:57143639-57143658	MsG0380014607.01.T01:CDS	30.0%
GATACCAAAATTCACATTCT+GGG	+	Chr3:57143717-57143736	MsG0380014607.01.T01:CDS	30.0%
TGATACCAAAATTCACATTC+TGG	+	Chr3:57143716-57143735	MsG0380014607.01.T01:CDS	30.0%
TGCATTCTCAATTGTAAACT+TGG	-	Chr3:57143673-57143692	None:intergenic	30.0%
TTTGTTCATGCTTTCATGTT+GGG	+	Chr3:57143507-57143526	MsG0380014607.01.T01:CDS	30.0%
AGATAATCTTCCAATAGCAC+GGG	-	Chr3:57143634-57143653	None:intergenic	35.0%
ATACACCTCTCAAGAAAGTT+TGG	+	Chr3:57143355-57143374	MsG0380014607.01.T01:CDS	35.0%
CAGATAATCTTCCAATAGCA+CGG	-	Chr3:57143635-57143654	None:intergenic	35.0%
CTTAACATCCTTGATCTCAA+AGG	-	Chr3:57143589-57143608	None:intergenic	35.0%
GACATCCGAATGAATTTGAA+GGG	+	Chr3:57143417-57143436	MsG0380014607.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	57143210	57143860	57143210	ID=MsG0380014607.01;Name=MsG0380014607.01
Chr3	mRNA	57143210	57143860	57143210	ID=MsG0380014607.01.T01;Parent=MsG0380014607.01;Name=MsG0380014607.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|216
Chr3	exon	57143210	57143860	57143210	ID=MsG0380014607.01.T01:exon:16180;Parent=MsG0380014607.01.T01
Chr3	CDS	57143210	57143860	57143210	ID=MsG0380014607.01.T01:cds;Parent=MsG0380014607.01.T01

Gene Sequence

>MsG0380014607.01.T01

ATGGCATCATCTTCAATGGAAGTTGACAATGTCCCATCTGAACAAAAAGTTTTGCCTCCAAAGCCAAAGTTTGAGCCTCTGAAACCTCATGAGATGCCTGGTGCTGCGGTTCAGTTTCGCAAGGTATCAGTTCCACCACATCGTTATACACCTCTCAAGAAAGTTTGGATGGACATCTACACTCCCGTATTTGAGCAGATGAAAATTGACATCCGAATGAATTTGAAGGGTCGAAAAGTTGAGTTGAAGACAAGGCATGATACACCTGACATCAGTAACCTGCAAAAATGTGCTGATTTTGTTCATGCTTTCATGTTGGGTTTTGATGTCATAGATGCTATTGCTATTCTGCGTTTGGATGAGCTCTATGTTGAGTCCTTTGAGATCAAGGATGTTAAGACTCTTCGAGGTGATCACTTGTCCCGTGCTATTGGAAGATTATCTGGAAAAGGTGGTAAAACCAAGTTTACAATTGAGAATGCATCAAAGACAAGAATCGTGATTGCTGATACCAAAATTCACATTCTGGGATCTTTTGCAAACATCAAGATTGCTAGGGATTCTCTTTGTTACCTAATTATGGGATCACCAGCAGGAAAGGTATATTCCAAGTTGAGAGCCGTTACTTCTAGGATGGCAGAAAGGTTTTGA

Protein sequence

>MsG0380014607.01.T01

MASSSMEVDNVPSEQKVLPPKPKFEPLKPHEMPGAAVQFRKVSVPPHRYTPLKKVWMDIYTPVFEQMKIDIRMNLKGRKVELKTRHDTPDISNLQKCADFVHAFMLGFDVIDAIAILRLDELYVESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFTIENASKTRIVIADTKIHILGSFANIKIARDSLCYLIMGSPAGKVYSKLRAVTSRMAERF*