AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048279.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048279.01.T01 MTR_4g087280 82.643 507 32 3 42 492 9 515 0.0 845
MsG0080048279.01.T01 MTR_4g087280 86.920 474 14 2 42 467 9 482 0.0 837
MsG0080048279.01.T01 MTR_5g091610 63.095 84 24 1 332 415 130 206 5.38e-28 112
MsG0080048279.01.T01 MTR_2g088350 97.436 39 1 0 388 426 1 39 3.53e-18 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048279.01.T01 AT1G73180 59.748 477 140 3 42 470 6 478 0.0 591
MsG0080048279.01.T01 AT1G73180 59.579 475 140 3 42 468 6 476 0.0 589

Find 127 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGAGTTTATACATTAAT+AGG 0.208963 contig261end:-9296 None:intergenic
GTTCTACAACCCAACTTAAA+TGG 0.213890 contig261end:+5872 MsG0080048279.01.T01:CDS
GAATAACTTAGCTCAGTTAT+TGG 0.260530 contig261end:+9203 MsG0080048279.01.T01:three_prime_UTR
CCAGAGTCACCAAGTAAATT+TGG 0.263110 contig261end:+8157 MsG0080048279.01.T01:CDS
TGACATTCGGTTGACCGTTC+TGG 0.288486 contig261end:-4437 None:intergenic
AATAACTTAGCTCAGTTATT+GGG 0.300084 contig261end:+9204 MsG0080048279.01.T01:three_prime_UTR
TAAGACTGCAGCTGCTATTC+AGG 0.307860 contig261end:+8422 MsG0080048279.01.T01:CDS
GGAGCACAGACCTTGGATTC+TGG 0.314496 contig261end:-5644 None:intergenic
TGAGAGACTAAATCATAAAA+AGG 0.325018 contig261end:+9408 MsG0080048279.01.T01:three_prime_UTR
ATGTCATCTCTTGAGATATT+AGG 0.332502 contig261end:+4290 MsG0080048279.01.T01:CDS
GTCGAGCCATAGGTTGAGTT+TGG 0.333097 contig261end:-5834 None:intergenic
AACTGCCTAAAGTTTGCTTC+CGG 0.349542 contig261end:-8985 None:intergenic
GTAACACTGCTAAAGAAATT+AGG 0.352354 contig261end:+4556 MsG0080048279.01.T01:CDS
AGCTCAGCGGAAGCAACTCC+TGG 0.358438 contig261end:-5584 None:intergenic
TTAGAGTTTGCTGTTGTGTA+TGG 0.359900 contig261end:+6164 MsG0080048279.01.T01:CDS
AAAACAAATCAGAGTTACTA+TGG 0.360928 contig261end:+5943 MsG0080048279.01.T01:CDS
AAGATAAGAATGTCACATTA+TGG 0.367499 contig261end:+4664 MsG0080048279.01.T01:CDS
GTAGTGGCTTGGGTTGGTTT+AGG 0.371129 contig261end:-8339 None:intergenic
AGTAGGATGCTCTAAGTCTA+AGG 0.388869 contig261end:-1926 None:intergenic
AACCATGATTCCATTTAAGT+TGG 0.389606 contig261end:-5882 None:intergenic
GGCCGGAAGAATGCTCACTA+TGG 0.390559 contig261end:+4400 MsG0080048279.01.T01:CDS
GTTTGTCGGTTAAGAGTTCC+AGG 0.393269 contig261end:+5566 MsG0080048279.01.T01:CDS
TGATGATGGATCTTTGCTTA+TGG 0.395412 contig261end:+4497 MsG0080048279.01.T01:CDS
TCAGAGCTGAATTGAATTGC+CGG 0.397889 contig261end:-5470 None:intergenic
GATGCTCAATGGTCAAATTC+AGG 0.398670 contig261end:+6140 MsG0080048279.01.T01:CDS
AAAACAGAAGCCACGAGATT+AGG 0.400924 contig261end:-4591 None:intergenic
GTCCATAGTGAGCATTCTTC+CGG 0.404734 contig261end:-4402 None:intergenic
ACTGCCTAAAGTTTGCTTCC+GGG 0.406693 contig261end:-8984 None:intergenic
ATCAAATGCTTGAATATTTG+AGG 0.408400 contig261end:+8923 MsG0080048279.01.T01:three_prime_UTR
CAAACTATTTGCAGGCTGAT+TGG 0.414549 contig261end:+8131 MsG0080048279.01.T01:intron
AAATGGAATCATGGTTCAAC+TGG 0.419644 contig261end:+5889 MsG0080048279.01.T01:CDS
ATATATAGTAATGACAGAAT+TGG 0.420958 contig261end:-4529 None:intergenic
ACCATGATGCAATCACAAAC+TGG 0.422671 contig261end:-8863 None:intergenic
ATTTAATCTTTAAACATATG+TGG 0.426292 contig261end:+9318 MsG0080048279.01.T01:three_prime_UTR
TGTCCCCGGAAGCAAACTTT+AGG 0.428249 contig261end:+8980 MsG0080048279.01.T01:three_prime_UTR
GACCATTGAGCATCATGAAT+AGG 0.429911 contig261end:-6131 None:intergenic
CATGCACCCCATCTGTTGTC+AGG 0.436554 contig261end:-5984 None:intergenic
TGCAGTTGGGTTGGCAGAAG+AGG 0.444560 contig261end:-8367 None:intergenic
TCGAGCCATAGGTTGAGTTT+GGG 0.446137 contig261end:-5833 None:intergenic
CAAACTATCCACCGGCTACA+TGG 0.447288 contig261end:-9262 None:intergenic
ACAATGATACAATTAAATCT+AGG 0.450746 contig261end:-8960 None:intergenic
AGAATATGACAAGGGCCAAT+TGG 0.452350 contig261end:+4727 MsG0080048279.01.T01:CDS
TTCTTATCTTGCGGCCCGGA+AGG 0.454027 contig261end:-4651 None:intergenic
CCATTGTCAACTTGAAGCCT+TGG 0.454121 contig261end:-7531 None:intergenic
CCAAATTTACTTGGTGACTC+TGG 0.455862 contig261end:-8157 None:intergenic
TTTCTAAAGGAGTTGTTTGT+CGG 0.459404 contig261end:+5552 MsG0080048279.01.T01:CDS
TTATACATTAATAGGCGAAA+TGG 0.461492 contig261end:-9288 None:intergenic
GGGAGAAACAGAAGGAGAAA+AGG 0.461899 contig261end:+8828 MsG0080048279.01.T01:CDS
TAATTATTTGGCAGGGAAAG+AGG 0.463070 contig261end:+6106 MsG0080048279.01.T01:intron
ACTTTATCAAGTTTGACATT+CGG 0.464197 contig261end:-4450 None:intergenic
ACCATGATTCCATTTAAGTT+GGG 0.465601 contig261end:-5881 None:intergenic
GTCATGAAATAGCACCCATC+TGG 0.472938 contig261end:-7495 None:intergenic
CTCCCCACTCATGTCGCCAT+TGG 0.475584 contig261end:-9071 None:intergenic
TACATGGACGTTAAATTTGA+AGG 0.477215 contig261end:-9246 None:intergenic
TAGAGTTTGCTGTTGTGTAT+GGG 0.481102 contig261end:+6165 MsG0080048279.01.T01:CDS
TTGCATCAACCAAGGCTGAA+TGG 0.489961 contig261end:+7451 MsG0080048279.01.T01:CDS
TTCGGTTGACCGTTCTGGAA+TGG 0.491146 contig261end:-4432 None:intergenic
GTGATGTCACCAAATTTACT+TGG 0.492747 contig261end:-8166 None:intergenic
AATGCTAAATTCAGTGATGA+TGG 0.493653 contig261end:+4483 MsG0080048279.01.T01:CDS
TTGGCATAGACTCACCTAGT+AGG 0.493698 contig261end:-1943 None:intergenic
AAATTTAACGTCCATGTAGC+CGG 0.495640 contig261end:+9251 MsG0080048279.01.T01:three_prime_UTR
AATTATTTGGCAGGGAAAGA+GGG 0.495759 contig261end:+6107 MsG0080048279.01.T01:intron
TGCTTCCCAAACTCAACCTA+TGG 0.499274 contig261end:+5828 MsG0080048279.01.T01:CDS
ACCCAACTTAAATGGAATCA+TGG 0.499990 contig261end:+5880 MsG0080048279.01.T01:CDS
CAGGTGTATAAAATGAGTCC+AGG 0.502715 contig261end:-8890 None:intergenic
TGAGATGATTAAAGTTGTGT+TGG 0.508822 contig261end:+9025 MsG0080048279.01.T01:three_prime_UTR
GACATTCTTATCTTGCGGCC+CGG 0.510825 contig261end:-4655 None:intergenic
AATGGTCTGTGTCAAGTGAA+TGG 0.511021 contig261end:+7469 MsG0080048279.01.T01:CDS
CAAGGCTTCAAGTTGACAAT+GGG 0.512251 contig261end:+7532 MsG0080048279.01.T01:CDS
GAGATGATTAAAGTTGTGTT+GGG 0.519660 contig261end:+9026 MsG0080048279.01.T01:three_prime_UTR
CTGCCTAAAGTTTGCTTCCG+GGG 0.520830 contig261end:-8983 None:intergenic
TGACACAGACCATTCAGCCT+TGG 0.524004 contig261end:-7460 None:intergenic
TTATACTACCTGACAACAGA+TGG 0.526764 contig261end:+5976 MsG0080048279.01.T01:CDS
TAGACTTAGAGCATCCTACT+AGG 0.532962 contig261end:+1929 MsG0080048279.01.T01:CDS
GTTCCAATGGCGACATGAGT+GGG 0.533264 contig261end:+9068 MsG0080048279.01.T01:three_prime_UTR
GGCCTATTCATGATGCTCAA+TGG 0.539103 contig261end:+6129 MsG0080048279.01.T01:CDS
ACAACTTACACACAAAAGAA+AGG 0.543128 contig261end:+9121 MsG0080048279.01.T01:three_prime_UTR
GAAGAATGCTCACTATGGAC+TGG 0.543679 contig261end:+4405 MsG0080048279.01.T01:CDS
TGCATTTGTTCCAGAATCCA+AGG 0.545907 contig261end:+5634 MsG0080048279.01.T01:CDS
TGTTCCAATGGCGACATGAG+TGG 0.546931 contig261end:+9067 MsG0080048279.01.T01:three_prime_UTR
TGCGGTGGACGATATGCGGC+TGG 0.549407 contig261end:-8396 None:intergenic
GGTTGACCGTTCTGGAATGG+AGG 0.551650 contig261end:-4429 None:intergenic
TAAATTTGAAGGTAGAAAGT+CGG 0.553102 contig261end:-9235 None:intergenic
AATGCAGCTACATGAGAAGC+AGG 0.553166 contig261end:-5617 None:intergenic
GCATTTGATAGCAGAAATGC+AGG 0.555723 contig261end:-8909 None:intergenic
GCCAGTTTGTGATTGCATCA+TGG 0.558614 contig261end:+8862 MsG0080048279.01.T01:exon
TAAGTTGGGTTGTAGAACAT+CGG 0.563090 contig261end:-5867 None:intergenic
TTTAATTGTATCATTGTCCC+CGG 0.564493 contig261end:+8966 MsG0080048279.01.T01:three_prime_UTR
CCAAGGCTTCAAGTTGACAA+TGG 0.565390 contig261end:+7531 MsG0080048279.01.T01:CDS
ACAACAGATGGGGTGCATGA+AGG 0.565598 contig261end:+5988 MsG0080048279.01.T01:CDS
GCTCTAAGTCTAAGGTTACA+AGG 0.567430 contig261end:-1918 None:intergenic
TGCAGCTGCTATTCAGGCAG+AGG 0.568714 contig261end:+8428 MsG0080048279.01.T01:CDS
TATACTACCTGACAACAGAT+GGG 0.573112 contig261end:+5977 MsG0080048279.01.T01:CDS
GTTGACCGTTCTGGAATGGA+GGG 0.578391 contig261end:-4428 None:intergenic
TGATGGATCTTTGCTTATGG+TGG 0.578520 contig261end:+4500 MsG0080048279.01.T01:CDS
GGAGAAGTGAAATACTGAGC+AGG 0.590746 contig261end:+9090 MsG0080048279.01.T01:three_prime_UTR
GCTGCAGTCTTAGCATGCGG+TGG 0.596595 contig261end:-8411 None:intergenic
AGGTGTATAAAATGAGTCCA+GGG 0.598016 contig261end:-8889 None:intergenic
CAAGTGAATGGTCTCCAGAT+GGG 0.601629 contig261end:+7481 MsG0080048279.01.T01:CDS
ATTATTTGGCAGGGAAAGAG+GGG 0.604036 contig261end:+6108 MsG0080048279.01.T01:intron
ATGCCGTGTGCCAACTAATG+AGG 0.604069 contig261end:+5505 MsG0080048279.01.T01:CDS
AGCATGCGGTGGACGATATG+CGG 0.604885 contig261end:-8400 None:intergenic
TCAAGTGAATGGTCTCCAGA+TGG 0.615111 contig261end:+7480 MsG0080048279.01.T01:CDS
GAAGTGAAATACTGAGCAGG+TGG 0.618395 contig261end:+9093 MsG0080048279.01.T01:three_prime_UTR
ATTAGTTGGCACACGGCATG+CGG 0.625309 contig261end:-5501 None:intergenic
AAACTCAACCTATGGCTCGA+CGG 0.625537 contig261end:+5836 MsG0080048279.01.T01:CDS
TTCAACTGGACTTCTAATTG+TGG 0.628741 contig261end:+5903 MsG0080048279.01.T01:CDS
TTCCAATGGCGACATGAGTG+GGG 0.629257 contig261end:+9069 MsG0080048279.01.T01:three_prime_UTR
AATGGCATCAAACTATCCAC+CGG 0.630725 contig261end:-9270 None:intergenic
GATGTTTGACAAGTTATACC+AGG 0.635363 contig261end:+8036 MsG0080048279.01.T01:CDS
ACATTATGGAAGATTGAGAC+TGG 0.641864 contig261end:+4678 MsG0080048279.01.T01:CDS
CATGCATAAAATATACTCAG+TGG 0.646279 contig261end:-9161 None:intergenic
TGACAGCAACAACAGCTCCA+AGG 0.647896 contig261end:+7514 MsG0080048279.01.T01:CDS
GCAGCTGCAGTCTTAGCATG+CGG 0.651643 contig261end:-8414 None:intergenic
AATGTGACATTCTTATCTTG+CGG 0.653542 contig261end:-4660 None:intergenic
GCACCTCATTAGTTGGCACA+CGG 0.654957 contig261end:-5508 None:intergenic
TTTAACGTCCATGTAGCCGG+TGG 0.664075 contig261end:+9254 MsG0080048279.01.T01:three_prime_UTR
GGAACAGCTTGCATCAACCA+AGG 0.670888 contig261end:+7443 MsG0080048279.01.T01:CDS
TTCTCAGAAGAATATGACAA+GGG 0.672557 contig261end:+4719 MsG0080048279.01.T01:CDS
ATTCTCAGAAGAATATGACA+AGG 0.693333 contig261end:+4718 MsG0080048279.01.T01:CDS
GGTGTATAAAATGAGTCCAG+GGG 0.693545 contig261end:-8888 None:intergenic
ACTGGCCCTCCATTCCAGAA+CGG 0.694693 contig261end:+4423 MsG0080048279.01.T01:CDS
ATACTACCTGACAACAGATG+GGG 0.704485 contig261end:+5978 MsG0080048279.01.T01:CDS
GTGTATAAAATGAGTCCAGG+GGG 0.711565 contig261end:-8887 None:intergenic
AGGTGATATAGAAAGCTCAG+CGG 0.737636 contig261end:-5597 None:intergenic
GTTTGCAAATAAGTTCCGCG+AGG 0.750889 contig261end:-4618 None:intergenic
GATACTGCAATGATACAACG+TGG 0.797741 contig261end:-1855 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAAAACATAGAT+AGG - contig261end:4344-4363 None:intergenic 10.0%
!! AATATAAAACTTTCAAAAAT+TGG - contig261end:3452-3471 None:intergenic 10.0%
!!! ATCATAATTTTATTTTCTAT+CGG - contig261end:7140-7159 None:intergenic 10.0%
!!! GTTTTAAAAAAATTACATTA+CGG + contig261end:2673-2692 MsG0080048279.01.T01:intron 10.0%
!!! TTTTAAAAAAATTACATTAC+GGG + contig261end:2674-2693 MsG0080048279.01.T01:intron 10.0%
!! AAAAAAAAAAAACAGAAACA+TGG + contig261end:4067-4086 MsG0080048279.01.T01:intron 15.0%
!! AAAAAAACGATTATATTACA+TGG + contig261end:3641-3660 MsG0080048279.01.T01:intron 15.0%
!! AACATAATAATTTAATCAGT+CGG - contig261end:7040-7059 None:intergenic 15.0%
!! AATTTAACGTTAATTATATG+CGG + contig261end:2732-2751 MsG0080048279.01.T01:intron 15.0%
!! ATTTAATCTTTAAACATATG+TGG + contig261end:9318-9337 MsG0080048279.01.T01:three_prime_UTR 15.0%
!! CAACATTAAAAAAAAAAGTT+TGG + contig261end:7258-7277 MsG0080048279.01.T01:intron 15.0%
!! TAATAAAATCTATTGATCTA+TGG - contig261end:7687-7706 None:intergenic 15.0%
!! TATTAATAAAAAACTATGCA+GGG - contig261end:6525-6544 None:intergenic 15.0%
!!! AAAAATTTATCTTTTAAGAC+CGG + contig261end:4837-4856 MsG0080048279.01.T01:intron 15.0%
!!! AAATTAAATGACGAATTTTT+AGG - contig261end:9375-9394 None:intergenic 15.0%
!!! ATAAACAATGAATATTTTCA+GGG - contig261end:7594-7613 None:intergenic 15.0%
!!! ATAATTGAAGTTTTTATTTC+TGG + contig261end:7293-7312 MsG0080048279.01.T01:intron 15.0%
!!! ATATTTGAGATTTTTTTTTG+TGG - contig261end:2934-2953 None:intergenic 15.0%
!!! CAAAAAAAAAATGGAATTTT+TGG + contig261end:2408-2427 MsG0080048279.01.T01:intron 15.0%
!!! CGATTTTTGTTTTAATTATT+TGG + contig261end:6094-6113 MsG0080048279.01.T01:intron 15.0%
!!! GAATTGATTTAAAAAATGAT+CGG - contig261end:3283-3302 None:intergenic 15.0%
!!! TCATAATTTTATTTTCTATC+GGG - contig261end:7139-7158 None:intergenic 15.0%
!! AAAAATAAACATCCAACAAA+TGG - contig261end:6631-6650 None:intergenic 20.0%
!! AAACATGAATATGAATTTCA+TGG + contig261end:3473-3492 MsG0080048279.01.T01:intron 20.0%
!! AAATATCAAAATTCAAAAGC+AGG - contig261end:6247-6266 None:intergenic 20.0%
!! AAGAAACTTAAAACAAAGAA+AGG - contig261end:8725-8744 None:intergenic 20.0%
!! AAGGAAAAAAAAAGGATTAA+AGG - contig261end:6607-6626 None:intergenic 20.0%
!! AATGTTGAAAATAACGTTTA+TGG - contig261end:7245-7264 None:intergenic 20.0%
!! ACAAACAGACAAAAAAAAAA+TGG + contig261end:2399-2418 MsG0080048279.01.T01:intron 20.0%
!! ACAATGATACAATTAAATCT+AGG - contig261end:8963-8982 None:intergenic 20.0%
!! ACATAATAATTTAATCAGTC+GGG - contig261end:7039-7058 None:intergenic 20.0%
!! AGAAACTTAAAACAAAGAAA+GGG - contig261end:8724-8743 None:intergenic 20.0%
!! ATATATAGTAATGACAGAAT+TGG - contig261end:4532-4551 None:intergenic 20.0%
!! ATCATAAAAAGGAACATAAA+AGG + contig261end:9419-9438 MsG0080048279.01.T01:three_prime_UTR 20.0%
!! ATGAAATATTAGAATAAGCA+TGG - contig261end:8253-8272 None:intergenic 20.0%
!! CTATTAATAAAAAACTATGC+AGG - contig261end:6526-6545 None:intergenic 20.0%
!! GTGTAACTAAAAAAATACAT+GGG + contig261end:4024-4043 MsG0080048279.01.T01:intron 20.0%
!! TATATGTGATATGTTCAATA+TGG + contig261end:6198-6217 MsG0080048279.01.T01:intron 20.0%
!! TGTAACTAAAAAAATACATG+GGG + contig261end:4025-4044 MsG0080048279.01.T01:intron 20.0%
!! TTGAACATATCACATATAAA+AGG - contig261end:6196-6215 None:intergenic 20.0%
!! TTGAGAGTTTATACATTAAT+AGG - contig261end:9299-9318 None:intergenic 20.0%
!!! AAAAAAAATGGAATTTTTGG+CGG + contig261end:2411-2430 MsG0080048279.01.T01:intron 20.0%
!!! AAGATGACTTTATTGTTTTT+TGG + contig261end:6342-6361 MsG0080048279.01.T01:intron 20.0%
!!! AATTTAAAATAGAAACAGTG+AGG - contig261end:8478-8497 None:intergenic 20.0%
!!! AGATGACTTTATTGTTTTTT+GGG + contig261end:6343-6362 MsG0080048279.01.T01:intron 20.0%
!!! ATCAAGATTTTTCACTATAA+TGG + contig261end:7995-8014 MsG0080048279.01.T01:CDS 20.0%
!!! ATTTAAAATAGAAACAGTGA+GGG - contig261end:8477-8496 None:intergenic 20.0%
!!! CATAATTTTATTTTCTATCG+GGG - contig261end:7138-7157 None:intergenic 20.0%
!!! GATAAACAATGAATATTTTC+AGG - contig261end:7595-7614 None:intergenic 20.0%
!!! GTTATTCAGTTTTCATTATT+TGG - contig261end:1965-1984 None:intergenic 20.0%
!!! TCAAGATTTTTCACTATAAT+GGG + contig261end:7996-8015 MsG0080048279.01.T01:CDS 20.0%
!!! TGATATAAAGTATCTAAATC+AGG + contig261end:6915-6934 MsG0080048279.01.T01:intron 20.0%
!!! TTAATTTGATGACATTTATG+AGG + contig261end:7862-7881 MsG0080048279.01.T01:intron 20.0%
!!! TTGGGACTTTATTTTTTTTT+GGG + contig261end:6361-6380 MsG0080048279.01.T01:intron 20.0%
!!! TTTCTCTTTTAAATCTAAGA+AGG + contig261end:6838-6857 MsG0080048279.01.T01:intron 20.0%
!!! TTTGGGACTTTATTTTTTTT+TGG + contig261end:6360-6379 MsG0080048279.01.T01:intron 20.0%
!!! TTTGTTTTAATTATTTGGCA+GGG + contig261end:6099-6118 MsG0080048279.01.T01:intron 20.0%
!!! TTTTGTTTTAATTATTTGGC+AGG + contig261end:6098-6117 MsG0080048279.01.T01:intron 20.0%
!!! TTTTTAACTTAGCATTCATT+TGG - contig261end:3165-3184 None:intergenic 20.0%
! AAAACAAATCAGAGTTACTA+TGG + contig261end:5943-5962 MsG0080048279.01.T01:CDS 25.0%
! AAACTCATTCAAGAATTCTA+GGG - contig261end:8615-8634 None:intergenic 25.0%
! AAATGAAAATGCTTCTTAGT+TGG - contig261end:7950-7969 None:intergenic 25.0%
! AACAATTAGAACATACTAAG+AGG - contig261end:6021-6040 None:intergenic 25.0%
! AAGATAAGAATGTCACATTA+TGG + contig261end:4664-4683 MsG0080048279.01.T01:CDS 25.0%
! AATAACTTAGCTCAGTTATT+GGG + contig261end:9204-9223 MsG0080048279.01.T01:three_prime_UTR 25.0%
! AATTGCAGAAATATTTGCAT+TGG - contig261end:3040-3059 None:intergenic 25.0%
! ACTTTATCAAGTTTGACATT+CGG - contig261end:4453-4472 None:intergenic 25.0%
! AGAAAGAAAGAAAAAACTCA+TGG - contig261end:6814-6833 None:intergenic 25.0%
! ATAATTCAACATTCTCATAG+TGG - contig261end:7187-7206 None:intergenic 25.0%
! ATATAGAAATGAAATGCAAC+CGG + contig261end:3959-3978 MsG0080048279.01.T01:intron 25.0%
! ATCAAATGCTTGAATATTTG+AGG + contig261end:8923-8942 MsG0080048279.01.T01:three_prime_UTR 25.0%
! ATCATAAATGAAACCTTAGA+AGG + contig261end:2017-2036 MsG0080048279.01.T01:intron 25.0%
! ATTCAACAATACATACCAAT+TGG - contig261end:4745-4764 None:intergenic 25.0%
! ATTGCAGAAATATTTGCATT+GGG - contig261end:3039-3058 None:intergenic 25.0%
! CAAATGGAAAGGAAAAAAAA+AGG - contig261end:6615-6634 None:intergenic 25.0%
! CATTGTTTATCTTTATCCAT+GGG + contig261end:7604-7623 MsG0080048279.01.T01:intron 25.0%
! GAAAGAAAGAAAAAACTCAT+GGG - contig261end:6813-6832 None:intergenic 25.0%
! GGTGTAACTAAAAAAATACA+TGG + contig261end:4023-4042 MsG0080048279.01.T01:intron 25.0%
! GTATAACATGATATGATCTA+TGG - contig261end:2976-2995 None:intergenic 25.0%
! TAAAGTCATCTTGCAAAAAT+TGG - contig261end:6334-6353 None:intergenic 25.0%
! TAAATTTGAAGGTAGAAAGT+CGG - contig261end:9238-9257 None:intergenic 25.0%
! TAACTATATGCGAACTAATT+GGG - contig261end:3850-3869 None:intergenic 25.0%
! TATATTTGATTGCAATCACT+TGG + contig261end:7765-7784 MsG0080048279.01.T01:intron 25.0%
! TCACTTGGTTATATATAACT+TGG + contig261end:7780-7799 MsG0080048279.01.T01:intron 25.0%
! TCATTGTTTATCTTTATCCA+TGG + contig261end:7603-7622 MsG0080048279.01.T01:intron 25.0%
! TGAGAGACTAAATCATAAAA+AGG + contig261end:9408-9427 MsG0080048279.01.T01:three_prime_UTR 25.0%
! TGCTAAGTTAAAAAAAACCA+TGG + contig261end:3171-3190 MsG0080048279.01.T01:intron 25.0%
! TGGTATGTATTGTTGAATTA+TGG + contig261end:4747-4766 MsG0080048279.01.T01:intron 25.0%
! TTAACTATATGCGAACTAAT+TGG - contig261end:3851-3870 None:intergenic 25.0%
! TTATACATTAATAGGCGAAA+TGG - contig261end:9291-9310 None:intergenic 25.0%
! TTTAAAGAAGAACTGATGAT+TGG + contig261end:6045-6064 MsG0080048279.01.T01:intron 25.0%
! TTTACGAAACAAGAAAAAGA+GGG + contig261end:8808-8827 MsG0080048279.01.T01:CDS 25.0%
!! ACTGCAAATACAAATCATTT+TGG - contig261end:8663-8682 None:intergenic 25.0%
!! GAATTGATGCTATTGTTATT+TGG + contig261end:5715-5734 MsG0080048279.01.T01:intron 25.0%
!! TTTTCAATAGTACATGATGT+CGG - contig261end:3696-3715 None:intergenic 25.0%
!! TTTTGTTCTTTTTCCATTGA+AGG + contig261end:7972-7991 MsG0080048279.01.T01:intron 25.0%
!!! AAAAAAATGGAATTTTTGGC+GGG + contig261end:2412-2431 MsG0080048279.01.T01:intron 25.0%
!!! ATTTTTCATTTTGCTGTTCT+AGG + contig261end:7399-7418 MsG0080048279.01.T01:intron 25.0%
!!! GGCTTTTAAAATCATATACA+AGG - contig261end:6474-6493 None:intergenic 25.0%
!!! TTTCTTTGTTTTTTCCTTTC+TGG + contig261end:7059-7078 MsG0080048279.01.T01:intron 25.0%
!!! TTTGAGATTTTTTTTTGTGG+TGG - contig261end:2931-2950 None:intergenic 25.0%
!!! TTTTAGGCATTTTCTTGTTT+AGG - contig261end:2637-2656 None:intergenic 25.0%
!!! TTTTTTTCCTTTCCATTTGT+TGG + contig261end:6616-6635 MsG0080048279.01.T01:intron 25.0%
AAAAAGTCCTGAAAAAATCC+GGG + contig261end:2479-2498 MsG0080048279.01.T01:intron 30.0%
AAAAATTGCACCTCATTAGT+TGG - contig261end:5518-5537 None:intergenic 30.0%
AAAATTCCATGAACCATTGT+AGG + contig261end:5768-5787 MsG0080048279.01.T01:intron 30.0%
AAATTCCATGAACCATTGTA+GGG + contig261end:5769-5788 MsG0080048279.01.T01:intron 30.0%
AACCATGATTCCATTTAAGT+TGG - contig261end:5885-5904 None:intergenic 30.0%
AACTTAAAACAAAGAAAGGG+AGG - contig261end:8721-8740 None:intergenic 30.0%
AATATCACAAGCAATTCTCA+TGG + contig261end:7216-7235 MsG0080048279.01.T01:intron 30.0%
AATGCTAAATTCAGTGATGA+TGG + contig261end:4483-4502 MsG0080048279.01.T01:CDS 30.0%
AATGTGACATTCTTATCTTG+CGG - contig261end:4663-4682 None:intergenic 30.0%
ACAACTTACACACAAAAGAA+AGG + contig261end:9121-9140 MsG0080048279.01.T01:three_prime_UTR 30.0%
ACAAGCAAAAATTTGTACAC+TGG - contig261end:5803-5822 None:intergenic 30.0%
ACTTAAAACAAAGAAAGGGA+GGG - contig261end:8720-8739 None:intergenic 30.0%
AGTAAGAAGAGTAAATCAGA+TGG + contig261end:5064-5083 MsG0080048279.01.T01:intron 30.0%
ATAAAACTGCAAAACAGTCA+AGG - contig261end:6972-6991 None:intergenic 30.0%
ATAGACAAGAGATGAAGAAA+TGG + contig261end:3809-3828 MsG0080048279.01.T01:intron 30.0%
ATCCTTGGCAAATGTAAATT+TGG + contig261end:4001-4020 MsG0080048279.01.T01:intron 30.0%
ATGAATCAGAAAACATGCTA+TGG + contig261end:7891-7910 MsG0080048279.01.T01:intron 30.0%
ATGTCATCTCTTGAGATATT+AGG + contig261end:4290-4309 MsG0080048279.01.T01:CDS 30.0%
ATTCTCAGAAGAATATGACA+AGG + contig261end:4718-4737 MsG0080048279.01.T01:CDS 30.0%
ATTTCAGCAATAAGTTTGCA+TGG + contig261end:8508-8527 MsG0080048279.01.T01:intron 30.0%
CAAAAAGTCCTGAAAAAATC+CGG + contig261end:2478-2497 MsG0080048279.01.T01:intron 30.0%
CAAACTCAAGTTTACGAAAT+AGG + contig261end:3408-3427 MsG0080048279.01.T01:intron 30.0%
CAAACTCATTCAAGAATTCT+AGG - contig261end:8616-8635 None:intergenic 30.0%
CAAGTTATGTTGTTAATCCT+TGG + contig261end:3986-4005 MsG0080048279.01.T01:intron 30.0%
CATGCATAAAATATACTCAG+TGG - contig261end:9164-9183 None:intergenic 30.0%
CTTGAAGATAAAAAACCATC+AGG + contig261end:8220-8239 MsG0080048279.01.T01:CDS 30.0%
CTTTACGAAACAAGAAAAAG+AGG + contig261end:8807-8826 MsG0080048279.01.T01:CDS 30.0%
GAAAAATCTTGATCCTTCAA+TGG - contig261end:7988-8007 None:intergenic 30.0%
GAATAACTTAGCTCAGTTAT+TGG + contig261end:9203-9222 MsG0080048279.01.T01:three_prime_UTR 30.0%
GACAGTGCATAATATATGTA+AGG + contig261end:2886-2905 MsG0080048279.01.T01:intron 30.0%
GACAGTTAAAACATAAGTCA+TGG - contig261end:5431-5450 None:intergenic 30.0%
GACCTAAAATAATCAACCAT+TGG - contig261end:8773-8792 None:intergenic 30.0%
GAGATGATTAAAGTTGTGTT+GGG + contig261end:9026-9045 MsG0080048279.01.T01:three_prime_UTR 30.0%
GATAGGATTATAAAGATTGG+GGG + contig261end:4989-5008 MsG0080048279.01.T01:intron 30.0%
GATATTTGCTTAAGATACCA+GGG + contig261end:6260-6279 MsG0080048279.01.T01:intron 30.0%
GATTTGTATTTGCAGTTGTT+AGG + contig261end:8667-8686 MsG0080048279.01.T01:intron 30.0%
GGATAGGATTATAAAGATTG+GGG + contig261end:4988-5007 MsG0080048279.01.T01:intron 30.0%
GGGATAGGATTATAAAGATT+GGG + contig261end:4987-5006 MsG0080048279.01.T01:intron 30.0%
GTAACACTGCTAAAGAAATT+AGG + contig261end:4556-4575 MsG0080048279.01.T01:CDS 30.0%
TAAAACTGCAAAACAGTCAA+GGG - contig261end:6971-6990 None:intergenic 30.0%
TAAACATCCAACAAATGGAA+AGG - contig261end:6626-6645 None:intergenic 30.0%
TACATGGACGTTAAATTTGA+AGG - contig261end:9249-9268 None:intergenic 30.0%
TACTCAAATTGCTCACATTA+TGG + contig261end:3535-3554 MsG0080048279.01.T01:intron 30.0%
TAGCATCCAACAATATTGAT+TGG + contig261end:2079-2098 MsG0080048279.01.T01:intron 30.0%
TATAAAGATTGGGGGAAAAT+AGG + contig261end:4997-5016 MsG0080048279.01.T01:intron 30.0%
TCCTTGGCAAATGTAAATTT+GGG + contig261end:4002-4021 MsG0080048279.01.T01:intron 30.0%
TGAATCAGAAAACATGCTAT+GGG + contig261end:7892-7911 MsG0080048279.01.T01:intron 30.0%
TGAGATGATTAAAGTTGTGT+TGG + contig261end:9025-9044 MsG0080048279.01.T01:three_prime_UTR 30.0%
TGATATTTGCTTAAGATACC+AGG + contig261end:6259-6278 MsG0080048279.01.T01:intron 30.0%
TGCATAATATATGTAAGGTC+CGG + contig261end:2891-2910 MsG0080048279.01.T01:intron 30.0%
TGGGATAGGATTATAAAGAT+TGG + contig261end:4986-5005 MsG0080048279.01.T01:intron 30.0%
TGTTTCATCATCAGTATTCA+AGG - contig261end:2230-2249 None:intergenic 30.0%
TTCTCAGAAGAATATGACAA+GGG + contig261end:4719-4738 MsG0080048279.01.T01:CDS 30.0%
TTGCAGAAATATTTGCATTG+GGG - contig261end:3038-3057 None:intergenic 30.0%
TTTAATTGTATCATTGTCCC+CGG + contig261end:8966-8985 MsG0080048279.01.T01:three_prime_UTR 30.0%
TTTCAATAGTACATGATGTC+GGG - contig261end:3695-3714 None:intergenic 30.0%
TTTGAAAATAACAGTAGAGC+TGG + contig261end:6412-6431 MsG0080048279.01.T01:intron 30.0%
TTTGATTACTATTCGAAAGC+AGG + contig261end:6288-6307 MsG0080048279.01.T01:intron 30.0%
! ACAAAATAAAAGCAGCCTTT+TGG - contig261end:7663-7682 None:intergenic 30.0%
! ACCATGATTCCATTTAAGTT+GGG - contig261end:5884-5903 None:intergenic 30.0%
! ACGAATTTTTCATGTTGAGT+TGG + contig261end:3368-3387 MsG0080048279.01.T01:intron 30.0%
! AGTAGTTCTACTCTTAATAG+TGG + contig261end:8553-8572 MsG0080048279.01.T01:intron 30.0%
! AGTGTACAAATTTTTGCTTG+TGG + contig261end:5802-5821 MsG0080048279.01.T01:CDS 30.0%
! ATCTCAAATATTTCTAACCG+TGG + contig261end:2943-2962 MsG0080048279.01.T01:intron 30.0%
! CCAACAATATTGATTGGATT+GGG + contig261end:2085-2104 MsG0080048279.01.T01:intron 30.0%
! GAAGATATTTTGTGCTTGAT+TGG + contig261end:7084-7103 MsG0080048279.01.T01:intron 30.0%
! TCCAACAATATTGATTGGAT+TGG + contig261end:2084-2103 MsG0080048279.01.T01:intron 30.0%
! TCTCAAATATTTCTAACCGT+GGG + contig261end:2944-2963 MsG0080048279.01.T01:intron 30.0%
! TGAATACTGATGATGAAACA+GGG + contig261end:2230-2249 MsG0080048279.01.T01:intron 30.0%
! TGCCAATGGTTGATTATTTT+AGG + contig261end:8768-8787 MsG0080048279.01.T01:intron 30.0%
! TGTTTGTTACTTAATGATCG+TGG - contig261end:2386-2405 None:intergenic 30.0%
! TTGAATACTGATGATGAAAC+AGG + contig261end:2229-2248 MsG0080048279.01.T01:intron 30.0%
! TTTCTAAAGGAGTTGTTTGT+CGG + contig261end:5552-5571 MsG0080048279.01.T01:CDS 30.0%
!! CTGTTTTGCAGTTTTATGTT+TGG + contig261end:6975-6994 MsG0080048279.01.T01:intron 30.0%
!! TAACAACATAACTTGTTGAC+CGG - contig261end:3981-4000 None:intergenic 30.0%
!! TACCATCACTTTTATCAGAT+TGG + contig261end:7160-7179 MsG0080048279.01.T01:intron 30.0%
!!! ATTCTGTTTTGAAATGCCAA+TGG + contig261end:8754-8773 MsG0080048279.01.T01:intron 30.0%
!!! ATTTTTCATGTTGAGTTGGA+CGG + contig261end:3372-3391 MsG0080048279.01.T01:intron 30.0%
!!! CTCTTTTTTCTAACCATTGT+TGG + contig261end:3236-3255 MsG0080048279.01.T01:intron 30.0%
!!! GAAAGTTTTAGACTTAGATC+AGG + contig261end:6383-6402 MsG0080048279.01.T01:intron 30.0%
!!! TATGATGCAACGTGTTTTTT+AGG - contig261end:2653-2672 None:intergenic 30.0%
!!! TATTTTGGGATTACGTAGAA+AGG + contig261end:7422-7441 MsG0080048279.01.T01:CDS 30.0%
!!! TTACGTTTTTTTTTGCTGAG+AGG + contig261end:3593-3612 MsG0080048279.01.T01:intron 30.0%
!!! TTCTGTTTGTTTTAGTTCGA+CGG + contig261end:4379-4398 MsG0080048279.01.T01:intron 30.0%
!!! TTTGCTGTTCTAGGTATTTT+GGG + contig261end:7408-7427 MsG0080048279.01.T01:intron 30.0%
!!! TTTTGCTGTTCTAGGTATTT+TGG + contig261end:7407-7426 MsG0080048279.01.T01:intron 30.0%
AAAAATCGTTATCGTCGTTG+TGG - contig261end:6082-6101 None:intergenic 35.0%
AAAATAGGCTTAGGTGGTTA+GGG + contig261end:5012-5031 MsG0080048279.01.T01:intron 35.0%
AAACATTCCAAAAACCTTCC+GGG + contig261end:4637-4656 MsG0080048279.01.T01:CDS 35.0%
AAACCAAATAGGCTTAGTCT+TGG - contig261end:5228-5247 None:intergenic 35.0%
AAATGGAATCATGGTTCAAC+TGG + contig261end:5889-5908 MsG0080048279.01.T01:CDS 35.0%
AAATTTAACGTCCATGTAGC+CGG + contig261end:9251-9270 MsG0080048279.01.T01:three_prime_UTR 35.0%
AAGAAGAGTAAATCAGATGG+AGG + contig261end:5067-5086 MsG0080048279.01.T01:intron 35.0%
AATGCAACTCTAAACTCAGT+TGG - contig261end:2059-2078 None:intergenic 35.0%
AATTATTTGGCAGGGAAAGA+GGG + contig261end:6107-6126 MsG0080048279.01.T01:intron 35.0%
AATTCCATGAACCATTGTAG+GGG + contig261end:5770-5789 MsG0080048279.01.T01:intron 35.0%
ACATTATGGAAGATTGAGAC+TGG + contig261end:4678-4697 MsG0080048279.01.T01:CDS 35.0%
ACCAACGACAATTGAAGTAA+AGG + contig261end:3345-3364 MsG0080048279.01.T01:intron 35.0%
ACCCAAATTTACATTTGCCA+AGG - contig261end:4006-4025 None:intergenic 35.0%
ACCCAACTTAAATGGAATCA+TGG + contig261end:5880-5899 MsG0080048279.01.T01:CDS 35.0%
AGGTGTATAAAATGAGTCCA+GGG - contig261end:8892-8911 None:intergenic 35.0%
AGTGTAAGATGTCATCCAAA+AGG + contig261end:7645-7664 MsG0080048279.01.T01:intron 35.0%
ATTGGCTAAATTAGGACTAC+TGG + contig261end:7102-7121 MsG0080048279.01.T01:intron 35.0%
ATTGTGTGCAAACTATTTGC+AGG + contig261end:8123-8142 MsG0080048279.01.T01:intron 35.0%
ATTTGGCATGCTGTGATTTA+GGG + contig261end:5732-5751 MsG0080048279.01.T01:intron 35.0%
CAAAATATCTTCCACCAGAA+AGG - contig261end:7076-7095 None:intergenic 35.0%
CAAACATTCCAAAAACCTTC+CGG + contig261end:4636-4655 MsG0080048279.01.T01:CDS 35.0%
CAATAGCATCAATTCCTCAT+TGG - contig261end:5710-5729 None:intergenic 35.0%
CACGTATTCTCAAACCAAAT+AGG - contig261end:5239-5258 None:intergenic 35.0%
CATCTCTTGAGATATTAGGT+AGG + contig261end:4294-4313 MsG0080048279.01.T01:intron 35.0%
CCATTTCCTTGACAAATCTT+CGG - contig261end:5327-5346 None:intergenic 35.0%
CCCAATCCAATCAATATTGT+TGG - contig261end:2088-2107 None:intergenic 35.0%
GAAAGCCCGAATAAAATGTA+GGG - contig261end:2525-2544 None:intergenic 35.0%
GACCAATCTGATAAAAGTGA+TGG - contig261end:7165-7184 None:intergenic 35.0%
GATGTTTGACAAGTTATACC+AGG + contig261end:8036-8055 MsG0080048279.01.T01:CDS 35.0%
GGATAGACATATATAACCAG+AGG + contig261end:5088-5107 MsG0080048279.01.T01:intron 35.0%
GTGATGTCACCAAATTTACT+TGG - contig261end:8169-8188 None:intergenic 35.0%
GTTCTACAACCCAACTTAAA+TGG + contig261end:5872-5891 MsG0080048279.01.T01:CDS 35.0%
GTTGTATGGAACATTGTGTT+GGG + contig261end:4864-4883 MsG0080048279.01.T01:intron 35.0%
TAAGTCATGGTGAGAATGTT+AGG - contig261end:5418-5437 None:intergenic 35.0%
TAATTATTTGGCAGGGAAAG+AGG + contig261end:6106-6125 MsG0080048279.01.T01:intron 35.0%
TACTTAATGATCGTGGTATC+AGG - contig261end:2379-2398 None:intergenic 35.0%
TATACTACCTGACAACAGAT+GGG + contig261end:5977-5996 MsG0080048279.01.T01:CDS 35.0%
TATTTGGCATGCTGTGATTT+AGG + contig261end:5731-5750 MsG0080048279.01.T01:intron 35.0%
TCCTTTACTTCAATTGTCGT+TGG - contig261end:3349-3368 None:intergenic 35.0%
TCTTCATCTCTTGTCTATGT+TGG - contig261end:3807-3826 None:intergenic 35.0%
TGACGACACTTAACTATCAT+TGG + contig261end:3322-3341 MsG0080048279.01.T01:intron 35.0%
TGTCAATGTATCTCTTGTTC+AGG + contig261end:5447-5466 MsG0080048279.01.T01:intron 35.0%
TGTTGTATGGAACATTGTGT+TGG + contig261end:4863-4882 MsG0080048279.01.T01:intron 35.0%
TTATACTACCTGACAACAGA+TGG + contig261end:5976-5995 MsG0080048279.01.T01:CDS 35.0%
TTCAACTGGACTTCTAATTG+TGG + contig261end:5903-5922 MsG0080048279.01.T01:CDS 35.0%
TTGTTTCCGAAGATTTGTCA+AGG + contig261end:5318-5337 MsG0080048279.01.T01:intron 35.0%
! AACCAAATAGGCTTAGTCTT+GGG - contig261end:5227-5246 None:intergenic 35.0%
! AATGTTTTCTCAAACCAACC+AGG + contig261end:5391-5410 MsG0080048279.01.T01:intron 35.0%
! CAAAGATGAGAATGTTGCTT+TGG + contig261end:4945-4964 MsG0080048279.01.T01:intron 35.0%
! CTACATTTTATTCGGGCTTT+CGG + contig261end:2524-2543 MsG0080048279.01.T01:intron 35.0%
! CTCAAATATTTCTAACCGTG+GGG + contig261end:2945-2964 MsG0080048279.01.T01:intron 35.0%
! GATACTGGGGATTTTTCTAA+AGG + contig261end:5539-5558 MsG0080048279.01.T01:CDS 35.0%
! TAAGTTGGGTTGTAGAACAT+CGG - contig261end:5870-5889 None:intergenic 35.0%
! TACATTTTATTCGGGCTTTC+GGG + contig261end:2525-2544 MsG0080048279.01.T01:intron 35.0%
! TGAGGATACATTTCCCTTTT+GGG - contig261end:6755-6774 None:intergenic 35.0%
! TGTGCTTGATTGGCTAAATT+AGG + contig261end:7094-7113 MsG0080048279.01.T01:intron 35.0%
! TTCTTTTGCCATTATCGTTG+TGG - contig261end:2599-2618 None:intergenic 35.0%
! TTTTTGTCACCAAACCAATG+AGG + contig261end:5693-5712 MsG0080048279.01.T01:intron 35.0%
!! AGGTGCAATTTTTCGATACT+GGG + contig261end:5525-5544 MsG0080048279.01.T01:CDS 35.0%
!! TAGAGTTTGCTGTTGTGTAT+GGG + contig261end:6165-6184 MsG0080048279.01.T01:CDS 35.0%
!! TGATGATGGATCTTTGCTTA+TGG + contig261end:4497-4516 MsG0080048279.01.T01:CDS 35.0%
!! TTAGAGTTTGCTGTTGTGTA+TGG + contig261end:6164-6183 MsG0080048279.01.T01:CDS 35.0%
!! TTTGCAGTTTTATGTTTGGC+TGG + contig261end:6979-6998 MsG0080048279.01.T01:intron 35.0%
!!! AGATTTTTTTTTGTGGTGGC+CGG - contig261end:2927-2946 None:intergenic 35.0%
!!! CGGATTTTTTCAGGACTTTT+TGG - contig261end:2480-2499 None:intergenic 35.0%
!!! CTTTCTCAGTTTTGTTCCAA+TGG + contig261end:9055-9074 MsG0080048279.01.T01:three_prime_UTR 35.0%
!!! CTTTGTTTTTTCCTTTCTGG+TGG + contig261end:7062-7081 MsG0080048279.01.T01:intron 35.0%
!!! TTTTCAAGTTCCTAATCTCG+TGG + contig261end:4581-4600 MsG0080048279.01.T01:CDS 35.0%
AAAACAGAAGCCACGAGATT+AGG - contig261end:4594-4613 None:intergenic 40.0%
AAACAAAGAAAGGGAGGGAA+AGG - contig261end:8715-8734 None:intergenic 40.0%
AAATCCGGGCTGCAATTATT+CGG + contig261end:2493-2512 MsG0080048279.01.T01:intron 40.0%
AAATCTAAGAAGGACCCTTG+AGG + contig261end:6848-6867 MsG0080048279.01.T01:intron 40.0%
AATCTAAGAAGGACCCTTGA+GGG + contig261end:6849-6868 MsG0080048279.01.T01:intron 40.0%
AATGGCATCAAACTATCCAC+CGG - contig261end:9273-9292 None:intergenic 40.0%
AATGGTCTGTGTCAAGTGAA+TGG + contig261end:7469-7488 MsG0080048279.01.T01:CDS 40.0%
AATGTATCTCTTGTTCAGGC+CGG + contig261end:5451-5470 MsG0080048279.01.T01:intron 40.0%
AATGTTCCATACAACATCGC+CGG - contig261end:4859-4878 None:intergenic 40.0%
AATTGTCGTTGGACCAACAA+TGG - contig261end:3252-3271 None:intergenic 40.0%
ACATATATAACCAGAGGCAG+AGG + contig261end:5094-5113 MsG0080048279.01.T01:intron 40.0%
ACCATGATGCAATCACAAAC+TGG - contig261end:8866-8885 None:intergenic 40.0%
AGAATATGACAAGGGCCAAT+TGG + contig261end:4727-4746 MsG0080048279.01.T01:CDS 40.0%
AGCACATACACTACCTTCTA+AGG - contig261end:2033-2052 None:intergenic 40.0%
AGGGAATATCTAGTCCAGTT+GGG - contig261end:6506-6525 None:intergenic 40.0%
AGGTGATATAGAAAGCTCAG+CGG - contig261end:5600-5619 None:intergenic 40.0%
ATACTACCTGACAACAGATG+GGG + contig261end:5978-5997 MsG0080048279.01.T01:CDS 40.0%
ATAGTAATCAAACCAAGCCC+TGG - contig261end:6280-6299 None:intergenic 40.0%
ATCAGAAAACATGCTATGGG+AGG + contig261end:7895-7914 MsG0080048279.01.T01:intron 40.0%
ATCATCAGTATTCAAGGCTC+GGG - contig261end:2224-2243 None:intergenic 40.0%
ATGCAATGACATCTGCGAAA+AGG - contig261end:8105-8124 None:intergenic 40.0%
ATTATTTGGCAGGGAAAGAG+GGG + contig261end:6108-6127 MsG0080048279.01.T01:intron 40.0%
ATTCCATGAACCATTGTAGG+GGG + contig261end:5771-5790 MsG0080048279.01.T01:intron 40.0%
CAAACTATTTGCAGGCTGAT+TGG + contig261end:8131-8150 MsG0080048279.01.T01:intron 40.0%
CAGGTGTATAAAATGAGTCC+AGG - contig261end:8893-8912 None:intergenic 40.0%
CATCATCAGTATTCAAGGCT+CGG - contig261end:2225-2244 None:intergenic 40.0%
CCAGAGTCACCAAGTAAATT+TGG + contig261end:8157-8176 MsG0080048279.01.T01:CDS 40.0%
CCGAAGATTTGTCAAGGAAA+TGG + contig261end:5324-5343 MsG0080048279.01.T01:intron 40.0%
CGAAAGCCCGAATAAAATGT+AGG - contig261end:2526-2545 None:intergenic 40.0%
CTAAGTCTCCATGATTGTTG+AGG - contig261end:5668-5687 None:intergenic 40.0%
CTTATCCCATTGAGTAGCAT+CGG - contig261end:5147-5166 None:intergenic 40.0%
CTTGACCTGCAAAAAGTTCA+TGG - contig261end:8317-8336 None:intergenic 40.0%
GAAAAAGAGGGAGAAACAGA+AGG + contig261end:8820-8839 MsG0080048279.01.T01:CDS 40.0%
GAAAATAGGCTTAGGTGGTT+AGG + contig261end:5011-5030 MsG0080048279.01.T01:intron 40.0%
GACCATTGAGCATCATGAAT+AGG - contig261end:6134-6153 None:intergenic 40.0%
GAGAGAAGACTGAACTGAAA+AGG - contig261end:4268-4287 None:intergenic 40.0%
GATACTGCAATGATACAACG+TGG - contig261end:1858-1877 None:intergenic 40.0%
GATGCTCAATGGTCAAATTC+AGG + contig261end:6140-6159 MsG0080048279.01.T01:CDS 40.0%
GATGTGTGATAGGACTAGAT+GGG + contig261end:4967-4986 MsG0080048279.01.T01:intron 40.0%
GCAAAAATTTGTACACTGGC+AGG - contig261end:5799-5818 None:intergenic 40.0%
GCAAACATTTGCTTCGTATG+AGG + contig261end:7367-7386 MsG0080048279.01.T01:intron 40.0%
GGGTTGCATCAACATTTGAA+AGG + contig261end:2694-2713 MsG0080048279.01.T01:intron 40.0%
GGTGTATAAAATGAGTCCAG+GGG - contig261end:8891-8910 None:intergenic 40.0%
GTGTATAAAATGAGTCCAGG+GGG - contig261end:8890-8909 None:intergenic 40.0%
TAGCAAGACCACAACGATAA+TGG + contig261end:2588-2607 MsG0080048279.01.T01:intron 40.0%
TCAATGGGATAAGGCTTAGT+TGG + contig261end:5154-5173 MsG0080048279.01.T01:intron 40.0%
TCAGAGCTGAATTGAATTGC+CGG - contig261end:5473-5492 None:intergenic 40.0%
TGAGCTTAACTCAGTTGAGA+TGG + contig261end:2864-2883 MsG0080048279.01.T01:intron 40.0%
TGCATTTGTTCCAGAATCCA+AGG + contig261end:5634-5653 MsG0080048279.01.T01:CDS 40.0%
TGTATCCTCAGCTGATGATT+TGG + contig261end:6765-6784 MsG0080048279.01.T01:intron 40.0%
TGTCAAACTTCATTGCTCCA+TGG - contig261end:3191-3210 None:intergenic 40.0%
TTCCATCGGATAGTGTTGTA+AGG - contig261end:6732-6751 None:intergenic 40.0%
TTTGGCATGCTGTGATTTAG+GGG + contig261end:5733-5752 MsG0080048279.01.T01:intron 40.0%
! AACTGCCTAAAGTTTGCTTC+CGG - contig261end:8988-9007 None:intergenic 40.0%
! AGTAGGATGCTCTAAGTCTA+AGG - contig261end:1929-1948 None:intergenic 40.0%
! ATGGGAGGATATTTTGCTGA+TGG + contig261end:7910-7929 MsG0080048279.01.T01:intron 40.0%
! CAAGGATTGGAACTTTGAAG+AGG + contig261end:6879-6898 MsG0080048279.01.T01:intron 40.0%
! CATGAACTTTTTGCAGGTCA+AGG + contig261end:8315-8334 MsG0080048279.01.T01:intron 40.0%
! CCAAATTTACTTGGTGACTC+TGG - contig261end:8160-8179 None:intergenic 40.0%
! CTGAGGATACATTTCCCTTT+TGG - contig261end:6756-6775 None:intergenic 40.0%
! GAAGACCATGAACTTTTTGC+AGG + contig261end:8309-8328 MsG0080048279.01.T01:intron 40.0%
! GCATCAATTCCTCATTGGTT+TGG - contig261end:5705-5724 None:intergenic 40.0%
! GCATTTGATAGCAGAAATGC+AGG - contig261end:8912-8931 None:intergenic 40.0%
! GCTCTAAGTCTAAGGTTACA+AGG - contig261end:1921-1940 None:intergenic 40.0%
! TAGACTTAGAGCATCCTACT+AGG + contig261end:1929-1948 MsG0080048279.01.T01:CDS 40.0%
! TCAAACAGAGTTGCTTTAGC+AGG - contig261end:6672-6691 None:intergenic 40.0%
! TGATGGATCTTTGCTTATGG+TGG + contig261end:4500-4519 MsG0080048279.01.T01:CDS 40.0%
! TTGGATTGGGAAACCAAAGT+TGG - contig261end:2197-2216 None:intergenic 40.0%
!! CAAGGCTTCAAGTTGACAAT+GGG + contig261end:7532-7551 MsG0080048279.01.T01:CDS 40.0%
!! GAGGTGCAATTTTTCGATAC+TGG + contig261end:5524-5543 MsG0080048279.01.T01:CDS 40.0%
!! GGTGCAATTTTTCGATACTG+GGG + contig261end:5526-5545 MsG0080048279.01.T01:CDS 40.0%
!! TGTTGCTTTGGATGTGTGAT+AGG + contig261end:4957-4976 MsG0080048279.01.T01:intron 40.0%
!!! ATTTCCCTTTTGGGTTCCAT+CGG - contig261end:6746-6765 None:intergenic 40.0%
!!! GATTTTTTTTTGTGGTGGCC+GGG - contig261end:2926-2945 None:intergenic 40.0%
!!! GTTTTATGTTTGGCTGGCTT+CGG + contig261end:6985-7004 MsG0080048279.01.T01:intron 40.0%
!!! TTTTTCAGGACTTTTTGGCC+CGG - contig261end:2475-2494 None:intergenic 40.0%
AAGCATGGCAAAGAACCTGA+TGG - contig261end:8238-8257 None:intergenic 45.0%
AAGCCATAACGATACCCAAC+TGG + contig261end:6489-6508 MsG0080048279.01.T01:intron 45.0%
AATCAATCGAAGTCGAGCGA+GGG + contig261end:4122-4141 MsG0080048279.01.T01:intron 45.0%
AATGCAGCTACATGAGAAGC+AGG - contig261end:5620-5639 None:intergenic 45.0%
ACACTGTCAAGTGCCAACTT+TGG + contig261end:2181-2200 MsG0080048279.01.T01:intron 45.0%
ACTATCCGATGGAACCCAAA+AGG + contig261end:6738-6757 MsG0080048279.01.T01:intron 45.0%
AGTTCGAGATACTACTGACC+TGG - contig261end:8057-8076 None:intergenic 45.0%
ATGGGTATGTTTGTCCACTG+TGG + contig261end:7550-7569 MsG0080048279.01.T01:intron 45.0%
ATGGTGAGAATGTTAGGACC+TGG - contig261end:5412-5431 None:intergenic 45.0%
ATGTAGCCGATGCTACTCAA+TGG + contig261end:5138-5157 MsG0080048279.01.T01:intron 45.0%
CAAGTGAATGGTCTCCAGAT+GGG + contig261end:7481-7500 MsG0080048279.01.T01:CDS 45.0%
CACTTATGTTACTCTCGTGC+TGG - contig261end:4922-4941 None:intergenic 45.0%
CAGGGAATATCTAGTCCAGT+TGG - contig261end:6507-6526 None:intergenic 45.0%
CCATTGTCAACTTGAAGCCT+TGG - contig261end:7534-7553 None:intergenic 45.0%
CCGAATAAAATGTAGGGCCT+GGG - contig261end:2519-2538 None:intergenic 45.0%
CGATGCTACTCAATGGGATA+AGG + contig261end:5145-5164 MsG0080048279.01.T01:intron 45.0%
CGGCGATAGTTAATTGTCGT+TGG - contig261end:3263-3282 None:intergenic 45.0%
CTATCCGATGGAACCCAAAA+GGG + contig261end:6739-6758 MsG0080048279.01.T01:intron 45.0%
CTATTCGAAAGCAGGACTTG+TGG + contig261end:6296-6315 MsG0080048279.01.T01:intron 45.0%
GAAGAATGCTCACTATGGAC+TGG + contig261end:4405-4424 MsG0080048279.01.T01:CDS 45.0%
GAAGTGAAATACTGAGCAGG+TGG + contig261end:9093-9112 MsG0080048279.01.T01:three_prime_UTR 45.0%
GATTGGGGGAAAATAGGCTT+AGG + contig261end:5003-5022 MsG0080048279.01.T01:intron 45.0%
GCATTGGGGTGCAATAATTG+TGG - contig261end:3024-3043 None:intergenic 45.0%
GCCAGTTTGTGATTGCATCA+TGG + contig261end:8862-8881 MsG0080048279.01.T01:exon 45.0%
GGAGAACATACCATATCACC+AGG - contig261end:7018-7037 None:intergenic 45.0%
GGAGAAGTGAAATACTGAGC+AGG + contig261end:9090-9109 MsG0080048279.01.T01:three_prime_UTR 45.0%
GGATGTGTGATAGGACTAGA+TGG + contig261end:4966-4985 MsG0080048279.01.T01:intron 45.0%
GGCCTATTCATGATGCTCAA+TGG + contig261end:6129-6148 MsG0080048279.01.T01:CDS 45.0%
GGGAGAAACAGAAGGAGAAA+AGG + contig261end:8828-8847 MsG0080048279.01.T01:CDS 45.0%
GTCATGAAATAGCACCCATC+TGG - contig261end:7498-7517 None:intergenic 45.0%
GTCCATAGTGAGCATTCTTC+CGG - contig261end:4405-4424 None:intergenic 45.0%
GTCCTTACAACACTATCCGA+TGG + contig261end:6727-6746 MsG0080048279.01.T01:intron 45.0%
GTGATAGGACTAGATGGGAT+AGG + contig261end:4972-4991 MsG0080048279.01.T01:intron 45.0%
GTTTGCAAATAAGTTCCGCG+AGG - contig261end:4621-4640 None:intergenic 45.0%
TAAGACTGCAGCTGCTATTC+AGG + contig261end:8422-8441 MsG0080048279.01.T01:CDS 45.0%
TCAAGTGAATGGTCTCCAGA+TGG + contig261end:7480-7499 MsG0080048279.01.T01:CDS 45.0%
TCTGTGCTCCTCAACAATCA+TGG + contig261end:5657-5676 MsG0080048279.01.T01:intron 45.0%
TGAGAATGTTAGGACCTGGT+TGG - contig261end:5408-5427 None:intergenic 45.0%
TGATCTATGGAACATCCCCA+CGG - contig261end:2963-2982 None:intergenic 45.0%
TGATGCCAAATCATCAGCTG+AGG - contig261end:6773-6792 None:intergenic 45.0%
TGCCCAAGACTAAGCCTATT+TGG + contig261end:5222-5241 MsG0080048279.01.T01:intron 45.0%
TGGGATAAGGCTTAGTTGGT+TGG + contig261end:5158-5177 MsG0080048279.01.T01:intron 45.0%
TGGGTATGTTTGTCCACTGT+GGG + contig261end:7551-7570 MsG0080048279.01.T01:intron 45.0%
TGTAGCCGATGCTACTCAAT+GGG + contig261end:5139-5158 MsG0080048279.01.T01:intron 45.0%
TTAAGACCGGCGATGTTGTA+TGG + contig261end:4850-4869 MsG0080048279.01.T01:intron 45.0%
TTGCATCAACCAAGGCTGAA+TGG + contig261end:7451-7470 MsG0080048279.01.T01:CDS 45.0%
TTGCTTAAGATACCAGGGCT+TGG + contig261end:6265-6284 MsG0080048279.01.T01:intron 45.0%
TTGGCATAGACTCACCTAGT+AGG - contig261end:1946-1965 None:intergenic 45.0%
! AAGAGGCTTTTGTAGTGGCT+TGG - contig261end:8353-8372 None:intergenic 45.0%
! ACTGCCTAAAGTTTGCTTCC+GGG - contig261end:8987-9006 None:intergenic 45.0%
! AGAGGCTTTTGTAGTGGCTT+GGG - contig261end:8352-8371 None:intergenic 45.0%
! AGTCCAGTTGGGTATCGTTA+TGG - contig261end:6495-6514 None:intergenic 45.0%
! CAACATAATCAGAGTGCCCA+TGG - contig261end:7623-7642 None:intergenic 45.0%
! CCAGGCCCTACATTTTATTC+GGG + contig261end:2517-2536 MsG0080048279.01.T01:intron 45.0%
! CCCAGGCCCTACATTTTATT+CGG + contig261end:2516-2535 MsG0080048279.01.T01:intron 45.0%
! GTTTGTCGGTTAAGAGTTCC+AGG + contig261end:5566-5585 MsG0080048279.01.T01:CDS 45.0%
! TGGTTTTTGTGCAGTTGGGT+TGG - contig261end:8379-8398 None:intergenic 45.0%
!! ATTCATTTGGTTCTGCAGCG+CGG - contig261end:3152-3171 None:intergenic 45.0%
!! ATTGAGTAGCATCGGCTACA+TGG - contig261end:5139-5158 None:intergenic 45.0%
!! CCAAGGCTTCAAGTTGACAA+TGG + contig261end:7531-7550 MsG0080048279.01.T01:CDS 45.0%
!! TATTCAAGGCTCGGGTTGAT+TGG - contig261end:2216-2235 None:intergenic 45.0%
!!! ATTGCAGCCCGGATTTTTTC+AGG - contig261end:2489-2508 None:intergenic 45.0%
!!! GTTTGTTTTAGTTCGACGGC+CGG + contig261end:4383-4402 MsG0080048279.01.T01:intron 45.0%
!!! TATTTTATTACATAAATAAA+TGG - contig261end:2271-2290 None:intergenic 5.0%
ACAACAGATGGGGTGCATGA+AGG + contig261end:5988-6007 MsG0080048279.01.T01:CDS 50.0%
ACAGTGTGCACTGTGTGCAA+AGG - contig261end:2168-2187 None:intergenic 50.0%
AGAAGGACCCTTGAGGGTTA+TGG + contig261end:6855-6874 MsG0080048279.01.T01:intron 50.0%
AGTAGATCAAGACCCCACAG+TGG - contig261end:7567-7586 None:intergenic 50.0%
ATCCTTGCCCATAACCCTCA+AGG - contig261end:6866-6885 None:intergenic 50.0%
ATGCCGTGTGCCAACTAATG+AGG + contig261end:5505-5524 MsG0080048279.01.T01:CDS 50.0%
ATTAGTTGGCACACGGCATG+CGG - contig261end:5504-5523 None:intergenic 50.0%
CAACTAGAGCTGTCAAAGCC+CGG - contig261end:2551-2570 None:intergenic 50.0%
CCCGAATAAAATGTAGGGCC+TGG - contig261end:2520-2539 None:intergenic 50.0%
GAACCCCCTACAATGGTTCA+TGG - contig261end:5777-5796 None:intergenic 50.0%
GAAGGACCCTTGAGGGTTAT+GGG + contig261end:6856-6875 MsG0080048279.01.T01:intron 50.0%
GAATCAATCGAAGTCGAGCG+AGG + contig261end:4121-4140 MsG0080048279.01.T01:intron 50.0%
GACATTCTTATCTTGCGGCC+CGG - contig261end:4658-4677 None:intergenic 50.0%
GCACCTCATTAGTTGGCACA+CGG - contig261end:5511-5530 None:intergenic 50.0%
GCAGTTGTTAGGAGAGAGCT+CGG + contig261end:8678-8697 MsG0080048279.01.T01:intron 50.0%
GGAACAGCTTGCATCAACCA+AGG + contig261end:7443-7462 MsG0080048279.01.T01:CDS 50.0%
GGGGTGCAATAATTGTGGTG+TGG - contig261end:3019-3038 None:intergenic 50.0%
GGGTATGTTTGTCCACTGTG+GGG + contig261end:7552-7571 MsG0080048279.01.T01:intron 50.0%
GTTCCAATGGCGACATGAGT+GGG + contig261end:9068-9087 MsG0080048279.01.T01:three_prime_UTR 50.0%
GTTCTTCATCGTCCTCGTGT+TGG - contig261end:4900-4919 None:intergenic 50.0%
TCCTTGCCCATAACCCTCAA+GGG - contig261end:6865-6884 None:intergenic 50.0%
TGACACAGACCATTCAGCCT+TGG - contig261end:7463-7482 None:intergenic 50.0%
TGACAGCAACAACAGCTCCA+AGG + contig261end:7514-7533 MsG0080048279.01.T01:CDS 50.0%
TGACATTCGGTTGACCGTTC+TGG - contig261end:4440-4459 None:intergenic 50.0%
TGAGGGTTATGGGCAAGGAT+TGG + contig261end:6866-6885 MsG0080048279.01.T01:intron 50.0%
TGGGGGAAAATAGGCTTAGG+TGG + contig261end:5006-5025 MsG0080048279.01.T01:intron 50.0%
TGTCCCCGGAAGCAAACTTT+AGG + contig261end:8980-8999 MsG0080048279.01.T01:three_prime_UTR 50.0%
TGTTCCAATGGCGACATGAG+TGG + contig261end:9067-9086 MsG0080048279.01.T01:three_prime_UTR 50.0%
TTCCAATGGCGACATGAGTG+GGG + contig261end:9069-9088 MsG0080048279.01.T01:three_prime_UTR 50.0%
TTTAACGTCCATGTAGCCGG+TGG + contig261end:9254-9273 MsG0080048279.01.T01:three_prime_UTR 50.0%
! CAAACTATCCACCGGCTACA+TGG - contig261end:9265-9284 None:intergenic 50.0%
! CAAGAAGTGCAGACCTCTAC+TGG + contig261end:6692-6711 MsG0080048279.01.T01:intron 50.0%
! CGGTAACTTGCCTGGTGATA+TGG + contig261end:7005-7024 MsG0080048279.01.T01:intron 50.0%
! CTGCCTAAAGTTTGCTTCCG+GGG - contig261end:8986-9005 None:intergenic 50.0%
! GGCAGAAGAGGCTTTTGTAG+TGG - contig261end:8358-8377 None:intergenic 50.0%
! TCTAGTTTGTCCTCTGCCTC+TGG - contig261end:5107-5126 None:intergenic 50.0%
! TTGTTGAGGAGCACAGACCT+TGG - contig261end:5654-5673 None:intergenic 50.0%
! TTTTATTCGGGCTTTCGGGC+CGG + contig261end:2529-2548 MsG0080048279.01.T01:intron 50.0%
!! AAGGCTCGGGTTGATTGGAT+TGG - contig261end:2211-2230 None:intergenic 50.0%
!! AGGCTCGGGTTGATTGGATT+GGG - contig261end:2210-2229 None:intergenic 50.0%
!! GCTTTTGTAGTGGCTTGGGT+TGG - contig261end:8348-8367 None:intergenic 50.0%
!! GTAGTGGCTTGGGTTGGTTT+AGG - contig261end:8342-8361 None:intergenic 50.0%
!! GTTGACCGTTCTGGAATGGA+GGG - contig261end:4431-4450 None:intergenic 50.0%
!! TTCGGTTGACCGTTCTGGAA+TGG - contig261end:4435-4454 None:intergenic 50.0%
!!! CGGCTGGTTTTTGTGCAGTT+GGG - contig261end:8383-8402 None:intergenic 50.0%
AAGGTCCGGAGTTCGAATCC+CGG + contig261end:2905-2924 MsG0080048279.01.T01:intron 55.0%
ACCCTTGAGGGTTATGGGCA+AGG + contig261end:6861-6880 MsG0080048279.01.T01:intron 55.0%
ACTGGCCCTCCATTCCAGAA+CGG + contig261end:4423-4442 MsG0080048279.01.T01:CDS 55.0%
AGCATGCGGTGGACGATATG+CGG - contig261end:8403-8422 None:intergenic 55.0%
CAGCGCGGCAATGAATATCG+TGG - contig261end:3137-3156 None:intergenic 55.0%
CATGCACCCCATCTGTTGTC+AGG - contig261end:5987-6006 None:intergenic 55.0%
CCAGTTCCAAGCTCCAGTAG+AGG - contig261end:6708-6727 None:intergenic 55.0%
CCTCTACTGGAGCTTGGAAC+TGG + contig261end:6705-6724 MsG0080048279.01.T01:intron 55.0%
CGAGGGTTGTCGTGAGAAGA+AGG + contig261end:4139-4158 MsG0080048279.01.T01:intron 55.0%
GATTGCATCATGGTTCCCCC+TGG + contig261end:8872-8891 MsG0080048279.01.T01:exon 55.0%
GCAGCTGCAGTCTTAGCATG+CGG - contig261end:8417-8436 None:intergenic 55.0%
GGAGCACAGACCTTGGATTC+TGG - contig261end:5647-5666 None:intergenic 55.0%
GGCCGGAAGAATGCTCACTA+TGG + contig261end:4400-4419 MsG0080048279.01.T01:CDS 55.0%
GGCGATGAAGAACCAACACG+AGG + contig261end:4885-4904 MsG0080048279.01.T01:intron 55.0%
TGCAGACCTCTACTGGAGCT+TGG + contig261end:6699-6718 MsG0080048279.01.T01:intron 55.0%
TGCAGCTGCTATTCAGGCAG+AGG + contig261end:8428-8447 MsG0080048279.01.T01:CDS 55.0%
TGGGCCGAATAATTGCAGCC+CGG - contig261end:2500-2519 None:intergenic 55.0%
TTCTTATCTTGCGGCCCGGA+AGG - contig261end:4654-4673 None:intergenic 55.0%
TTTATTCGGGCTTTCGGGCC+GGG + contig261end:2530-2549 MsG0080048279.01.T01:intron 55.0%
! GCTTCTGTTTTGTCGCCTCG+CGG + contig261end:4603-4622 MsG0080048279.01.T01:CDS 55.0%
!! GGTTGACCGTTCTGGAATGG+AGG - contig261end:4432-4451 None:intergenic 55.0%
!! TGCAGTTGGGTTGGCAGAAG+AGG - contig261end:8370-8389 None:intergenic 55.0%
!!! GCGGCTGGTTTTTGTGCAGT+TGG - contig261end:8384-8403 None:intergenic 55.0%
AGCTCAGCGGAAGCAACTCC+TGG - contig261end:5587-5606 None:intergenic 60.0%
CTCCCCACTCATGTCGCCAT+TGG - contig261end:9074-9093 None:intergenic 60.0%
CTGGCAGGAACCCCCTACAA+TGG - contig261end:5784-5803 None:intergenic 60.0%
GCTGCAGTCTTAGCATGCGG+TGG - contig261end:8414-8433 None:intergenic 60.0%
GGGCTGCAATTATTCGGCCC+AGG + contig261end:2499-2518 MsG0080048279.01.T01:intron 60.0%
! CTTGCGGCCCGGAAGGTTTT+TGG - contig261end:4647-4666 None:intergenic 60.0%
! GCTGGCTTCGGTAACTTGCC+TGG + contig261end:6997-7016 MsG0080048279.01.T01:intron 60.0%
AAAAAGCCCGCAGCCCGCTC+GGG - contig261end:2448-2467 None:intergenic 65.0%
GAAAAAGCCCGCAGCCCGCT+CGG - contig261end:2449-2468 None:intergenic 65.0%
GGTGGCCGGGATTCGAACTC+CGG - contig261end:2913-2932 None:intergenic 65.0%
TGCGGTGGACGATATGCGGC+TGG - contig261end:8399-8418 None:intergenic 65.0%
!!! AGCGGGCTGCGGGCTTTTTC+GGG + contig261end:2449-2468 MsG0080048279.01.T01:intron 65.0%
!!! GAGCGGGCTGCGGGCTTTTT+CGG + contig261end:2448-2467 MsG0080048279.01.T01:intron 65.0%
!!! GCTGCGGGCTTTTTCGGGCC+GGG + contig261end:2454-2473 MsG0080048279.01.T01:intron 70.0%
!!! GGCTGCGGGCTTTTTCGGGC+CGG + contig261end:2453-2472 MsG0080048279.01.T01:intron 70.0%
! CCCGCAGCCCGCTCGGGCTT+CGG - contig261end:2442-2461 None:intergenic 80.0%
! CCGCAGCCCGCTCGGGCTTC+GGG - contig261end:2441-2460 None:intergenic 80.0%
! CGGGCTGCCCGAAGCCCGAG+CGG + contig261end:2431-2450 MsG0080048279.01.T01:intron 80.0%
! GGGCTGCCCGAAGCCCGAGC+GGG + contig261end:2432-2451 MsG0080048279.01.T01:intron 80.0%
!!! CCCGAAGCCCGAGCGGGCTG+CGG + contig261end:2438-2457 MsG0080048279.01.T01:intron 80.0%
!!! CCGAAGCCCGAGCGGGCTGC+GGG + contig261end:2439-2458 MsG0080048279.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
contig261end gene 1850 9440 1850 ID=MsG0080048279.01;Name=MsG0080048279.01
contig261end mRNA 1850 9440 1850 ID=MsG0080048279.01.T01;Parent=MsG0080048279.01;Name=MsG0080048279.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0.7|0.90|0.90|1|1|11|567|493
contig261end exon 8790 9440 8790 ID=MsG0080048279.01.T01:exon:9235;Parent=MsG0080048279.01.T01
contig261end exon 8331 8449 8331 ID=MsG0080048279.01.T01:exon:9234;Parent=MsG0080048279.01.T01
contig261end exon 8145 8241 8145 ID=MsG0080048279.01.T01:exon:9233;Parent=MsG0080048279.01.T01
contig261end exon 7994 8057 7994 ID=MsG0080048279.01.T01:exon:9232;Parent=MsG0080048279.01.T01
contig261end exon 7421 7553 7421 ID=MsG0080048279.01.T01:exon:9231;Parent=MsG0080048279.01.T01
contig261end exon 6120 6188 6120 ID=MsG0080048279.01.T01:exon:9230;Parent=MsG0080048279.01.T01
contig261end exon 5790 6024 5790 ID=MsG0080048279.01.T01:exon:9229;Parent=MsG0080048279.01.T01
contig261end exon 5469 5655 5469 ID=MsG0080048279.01.T01:exon:9228;Parent=MsG0080048279.01.T01
contig261end exon 4394 4748 4394 ID=MsG0080048279.01.T01:exon:9227;Parent=MsG0080048279.01.T01
contig261end exon 4274 4311 4274 ID=MsG0080048279.01.T01:exon:9226;Parent=MsG0080048279.01.T01
contig261end exon 1850 1950 1850 ID=MsG0080048279.01.T01:exon:9225;Parent=MsG0080048279.01.T01
contig261end CDS 1850 1950 1850 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 4274 4311 4274 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 4394 4748 4394 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 5469 5655 5469 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 5790 6024 5790 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 6120 6188 6120 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 7421 7553 7421 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 7994 8057 7994 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 8145 8241 8145 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 8331 8449 8331 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end CDS 8790 8873 8790 ID=MsG0080048279.01.T01:cds;Parent=MsG0080048279.01.T01
contig261end three_prime_UTR 8874 9440 8874 ID=MsG0080048279.01.T01:three_prime_utr;Parent=MsG0080048279.01.T01
Gene Sequence

>MsG0080048279.01.T01

ATGCACCACGTTGTATCATTGCAGTATCTTAGTGTTGAGCTGTCTTTGTATGCTGCTGTGCAAATGAACCTTGTAACCTTAGACTTAGAGCATCCTACTAGTTCAGTCTTCTCTCTAATGTCATCTCTTGAGATATTAGTTCGACGGCCGGAAGAATGCTCACTATGGACTGGCCCTCCATTCCAGAACGGTCAACCGAATGTCAAACTTGATAAAGTTAATTGCTTGAATGCTAAATTCAGTGATGATGGATCTTTGCTTATGGTGGTCAAATCCAATTCTGTCATTACTATATATGATTGTAACACTGCTAAAGAAATTAGGTCTTTTCAAGTTCCTAATCTCGTGGCTTCTGTTTTGTCGCCTCGCGGAACTTATTTGCAAACATTCCAAAAACCTTCCGGGCCGCAAGATAAGAATGTCACATTATGGAAGATTGAGACTGGTGATTCTATTTATCAACATTCTCAGAAGAATATGACAAGGGCCAATTGGCCGGCAATTCAATTCAGCTCTGATGAAGCTACCGCATGCCGTGTGCCAACTAATGAGGTGCAATTTTTCGATACTGGGGATTTTTCTAAAGGAGTTGTTTGTCGGTTAAGAGTTCCAGGAGTTGCTTCCGCTGAGCTTTCTATATCACCTGCTTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCCAGTGTACAAATTTTTGCTTGTGGAGATGCTTCCCAAACTCAACCTATGGCTCGACGGAGCTTTTTCCGATGTTCTACAACCCAACTTAAATGGAATCATGGTTCAACTGGACTTCTAATTGTGGTGCAGTCAGATGTTGATAAAACAAATCAGAGTTACTATGGAGAATCAAAGTTATACTACCTGACAACAGATGGGGTGCATGAAGGATTAGTGCCTCTTAGGAAAGAGGGGCCTATTCATGATGCTCAATGGTCAAATTCAGGCTTAGAGTTTGCTGTTGTGTATGGGTGTATTTTGGGATTACGTAGAAAGGAACAGCTTGCATCAACCAAGGCTGAATGGTCTGTGTCAAGTGAATGGTCTCCAGATGGGTGCTATTTCATGACAGCAACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTATAATGGGTCATTGTACTTCAAGCAGATGTTTGACAAGTTATACCAGGCTGATTGGAAACCAGAGTCACCAAGTAAATTTGGTGACATCACTGAACTAATCAAGTCTCTAGACTCGATAAAACTTGAAGATAAAAAACCATCAGGTCAAGGACCTAAACCAACCCAAGCCACTACAAAAGCCTCTTCTGCCAACCCAACTGCACAAAAACCAGCCGCATATCGTCCACCGCATGCTAAGACTGCAGCTGCTATTCAGGCAGAGGTCATTGAGCAAGAATGCTTTACGAAACAAGAAAAAGAGGGAGAAACAGAAGGAGAAAAGGCTGCTGCAGATGCCAGTTTGTGA
Protein sequence

>MsG0080048279.01.T01

MHHVVSLQYLSVELSLYAAVQMNLVTLDLEHPTSSVFSLMSSLEILVRRPEECSLWTGPPFQNGQPNVKLDKVNCLNAKFSDDGSLLMVVKSNSVITIYDCNTAKEIRSFQVPNLVASVLSPRGTYLQTFQKPSGPQDKNVTLWKIETGDSIYQHSQKNMTRANWPAIQFSSDEATACRVPTNEVQFFDTGDFSKGVVCRLRVPGVASAELSISPASHVAAFVPESKGVPASVQIFACGDASQTQPMARRSFFRCSTTQLKWNHGSTGLLIVVQSDVDKTNQSYYGESKLYYLTTDGVHEGLVPLRKEGPIHDAQWSNSGLEFAVVYGCILGLRRKEQLASTKAEWSVSSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKQMFDKLYQADWKPESPSKFGDITELIKSLDSIKLEDKKPSGQGPKPTQATTKASSANPTAQKPAAYRPPHAKTAAAIQAEVIEQECFTKQEKEGETEGEKAAADASL*