AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023363.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023363.01.T01 MTR_8g091650 95.413 109 5 0 116 224 159 267 4.91e-68 211
MsG0480023363.01.T01 MTR_8g091650 95.833 48 2 0 71 118 2 49 3.85e-22 92.0
MsG0480023363.01.T01 MTR_8g091650 95.413 109 5 0 116 224 232 340 1.96e-67 211
MsG0480023363.01.T01 MTR_8g091650 81.967 122 18 2 1 118 1 122 1.76e-57 186
MsG0480023363.01.T01 MTR_8g091650 95.413 109 5 0 116 224 268 376 6.99e-67 211
MsG0480023363.01.T01 MTR_8g091650 63.291 158 18 3 1 118 1 158 4.94e-50 167
MsG0480023363.01.T01 MTR_3g087940 71.560 109 31 0 116 224 237 345 2.01e-47 160
MsG0480023363.01.T01 MTR_3g087940 51.639 122 50 3 3 116 4 124 7.02e-28 108
MsG0480023363.01.T01 MTR_7g089800 50.427 117 51 2 116 225 292 408 1.48e-25 103
MsG0480023363.01.T01 MTR_7g089800 73.913 46 12 0 71 116 138 183 3.43e-13 68.2
MsG0480023363.01.T01 MTR_7g089800 49.573 117 52 1 116 225 321 437 1.59e-25 103
MsG0480023363.01.T01 MTR_7g089800 73.913 46 12 0 71 116 167 212 2.78e-13 68.6
MsG0480023363.01.T01 MTR_8g040120 48.718 117 53 1 116 225 335 451 6.37e-25 102
MsG0480023363.01.T01 MTR_8g040120 73.913 46 12 0 71 116 181 226 4.16e-13 68.2
MsG0480023363.01.T01 MTR_2g086420 50.000 102 49 1 117 218 347 446 9.30e-24 99.0
MsG0480023363.01.T01 MTR_2g086420 71.111 45 13 0 71 115 193 237 4.27e-12 65.1
MsG0480023363.01.T01 MTR_2g086420 50.000 102 49 1 117 218 348 447 9.43e-24 99.0
MsG0480023363.01.T01 MTR_2g086420 71.111 45 13 0 71 115 194 238 4.32e-12 65.1
MsG0480023363.01.T01 MTR_3g073560 50.459 109 54 0 117 225 224 332 1.17e-23 99.0
MsG0480023363.01.T01 MTR_3g073560 38.182 110 62 3 13 116 1 110 1.35e-13 69.7
MsG0480023363.01.T01 MTR_5g054900 49.038 104 46 1 122 218 228 331 9.43e-22 92.0
MsG0480023363.01.T01 MTR_5g054900 60.000 55 22 0 70 124 67 121 1.10e-12 66.6
MsG0480023363.01.T01 MTR_5g054900 49.038 104 46 1 122 218 224 327 9.79e-22 92.0
MsG0480023363.01.T01 MTR_5g054900 76.190 42 10 0 70 111 67 108 2.40e-12 65.5
MsG0480023363.01.T01 MTR_5g054900 49.038 104 46 1 122 218 309 412 1.30e-21 92.4
MsG0480023363.01.T01 MTR_5g054900 60.000 55 22 0 70 124 148 202 8.58e-13 67.0
MsG0480023363.01.T01 MTR_5g054900 49.038 104 46 1 122 218 335 438 1.44e-21 92.4
MsG0480023363.01.T01 MTR_5g054900 76.190 42 10 0 70 111 178 219 1.96e-12 66.2
MsG0480023363.01.T01 MTR_5g060950 47.706 109 57 0 117 225 226 334 1.69e-21 91.7
MsG0480023363.01.T01 MTR_5g060950 36.607 112 63 2 13 116 1 112 1.37e-13 69.3
MsG0480023363.01.T01 MTR_7g092750 42.105 114 62 1 116 225 234 347 2.36e-20 88.6
MsG0480023363.01.T01 MTR_7g092750 60.656 61 24 0 55 115 57 117 4.80e-15 73.6
MsG0480023363.01.T01 MTR_7g092750 42.105 114 62 1 116 225 335 448 3.13e-20 89.0
MsG0480023363.01.T01 MTR_7g092750 60.656 61 24 0 55 115 158 218 4.57e-15 73.9
MsG0480023363.01.T01 MTR_1g111310 48.148 108 48 3 122 224 211 315 2.03e-19 86.7
MsG0480023363.01.T01 MTR_1g111310 48.148 108 48 3 122 224 586 690 2.03e-19 86.7
MsG0480023363.01.T01 MTR_1g111310 63.830 47 17 0 70 116 420 466 7.44e-11 61.6
MsG0480023363.01.T01 MTR_4g053250 45.098 102 54 1 117 218 340 439 1.73e-18 84.0
MsG0480023363.01.T01 MTR_4g053250 61.224 49 19 0 67 115 185 233 8.73e-11 61.2
MsG0480023363.01.T01 MTR_7g092750 60.656 61 24 0 55 115 158 218 4.46e-15 73.9
MsG0480023363.01.T01 MTR_7g092750 40.909 88 48 1 142 225 335 422 2.46e-12 65.9
MsG0480023363.01.T01 MTR_0126s0080 57.377 61 26 0 55 115 200 260 5.43e-14 70.9
MsG0480023363.01.T01 MTR_1g090370 36.792 106 55 3 116 219 119 214 2.24e-13 67.4
MsG0480023363.01.T01 MTR_1g111320 65.217 46 16 0 71 116 146 191 1.48e-11 62.0
MsG0480023363.01.T01 MTR_3g044820 63.830 47 17 0 70 116 44 90 1.50e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023363.01.T01 AT5G10030 67.890 109 35 0 116 224 238 346 6.96e-43 148
MsG0480023363.01.T01 AT5G10030 46.774 124 52 5 4 116 5 125 1.10e-20 89.4
MsG0480023363.01.T01 AT5G10030 67.890 109 35 0 116 224 238 346 6.96e-43 148
MsG0480023363.01.T01 AT5G10030 46.774 124 52 5 4 116 5 125 1.10e-20 89.4
MsG0480023363.01.T01 AT5G10030 67.890 109 35 0 116 224 238 346 6.96e-43 148
MsG0480023363.01.T01 AT5G10030 46.774 124 52 5 4 116 5 125 1.10e-20 89.4
MsG0480023363.01.T01 AT5G10030 67.890 109 35 0 116 224 238 346 6.96e-43 148
MsG0480023363.01.T01 AT5G10030 46.774 124 52 5 4 116 5 125 1.10e-20 89.4
MsG0480023363.01.T01 AT5G10030 67.890 109 35 0 116 224 238 346 6.96e-43 148
MsG0480023363.01.T01 AT5G10030 46.774 124 52 5 4 116 5 125 1.10e-20 89.4
MsG0480023363.01.T01 AT5G65210 66.055 109 37 0 116 224 172 280 2.31e-41 142
MsG0480023363.01.T01 AT5G65210 69.643 56 15 1 63 116 4 59 6.66e-16 75.5
MsG0480023363.01.T01 AT5G65210 66.055 109 37 0 116 224 242 350 6.34e-41 143
MsG0480023363.01.T01 AT5G65210 44.444 126 56 5 4 116 5 129 4.74e-20 87.8
MsG0480023363.01.T01 AT5G65210 66.055 109 37 0 116 224 242 350 6.34e-41 143
MsG0480023363.01.T01 AT5G65210 44.444 126 56 5 4 116 5 129 4.74e-20 87.8
MsG0480023363.01.T01 AT5G65210 66.055 109 37 0 116 224 242 350 6.34e-41 143
MsG0480023363.01.T01 AT5G65210 44.444 126 56 5 4 116 5 129 4.74e-20 87.8
MsG0480023363.01.T01 AT5G65210 66.055 109 37 0 116 224 242 350 6.34e-41 143
MsG0480023363.01.T01 AT5G65210 44.444 126 56 5 4 116 5 129 4.74e-20 87.8
MsG0480023363.01.T01 AT5G65210 66.055 109 37 0 116 224 242 350 6.34e-41 143
MsG0480023363.01.T01 AT5G65210 44.444 126 56 5 4 116 5 129 4.74e-20 87.8
MsG0480023363.01.T01 AT5G65210 66.055 109 37 0 116 224 242 350 6.34e-41 143
MsG0480023363.01.T01 AT5G65210 44.444 126 56 5 4 116 5 129 4.74e-20 87.8
MsG0480023363.01.T01 AT1G77920 54.808 104 46 1 117 219 242 345 2.13e-30 115
MsG0480023363.01.T01 AT1G77920 36.879 141 56 4 4 116 3 138 4.81e-15 73.6
MsG0480023363.01.T01 AT1G22070 54.054 111 49 2 117 225 257 367 1.23e-27 108
MsG0480023363.01.T01 AT1G22070 38.583 127 57 2 11 116 17 143 1.10e-16 78.2
MsG0480023363.01.T01 AT1G08320 47.573 103 52 1 116 218 207 307 4.59e-23 95.9
MsG0480023363.01.T01 AT1G08320 71.111 45 13 0 71 115 54 98 9.18e-12 63.9
MsG0480023363.01.T01 AT1G08320 47.573 103 52 1 116 218 207 307 4.59e-23 95.9
MsG0480023363.01.T01 AT1G08320 71.111 45 13 0 71 115 54 98 9.18e-12 63.9
MsG0480023363.01.T01 AT1G08320 47.573 103 52 1 116 218 331 431 8.11e-23 96.3
MsG0480023363.01.T01 AT1G08320 78.049 41 9 0 71 111 178 218 8.77e-12 64.3
MsG0480023363.01.T01 AT1G08320 47.573 103 52 1 116 218 331 431 8.11e-23 96.3
MsG0480023363.01.T01 AT1G08320 78.049 41 9 0 71 111 178 218 8.77e-12 64.3
MsG0480023363.01.T01 AT1G08320 47.573 103 52 1 116 218 331 431 8.11e-23 96.3
MsG0480023363.01.T01 AT1G08320 78.049 41 9 0 71 111 178 218 8.77e-12 64.3
MsG0480023363.01.T01 AT5G06960 47.788 113 53 1 116 222 200 312 1.74e-21 91.3
MsG0480023363.01.T01 AT5G06960 71.739 46 13 0 71 116 46 91 1.64e-12 65.9
MsG0480023363.01.T01 AT5G06960 47.788 113 53 1 116 222 200 312 1.74e-21 91.3
MsG0480023363.01.T01 AT5G06960 71.739 46 13 0 71 116 46 91 1.64e-12 65.9
MsG0480023363.01.T01 AT5G06960 47.788 113 53 1 116 222 180 292 1.87e-21 90.9
MsG0480023363.01.T01 AT5G06960 71.739 46 13 0 71 116 26 71 1.95e-12 65.9
MsG0480023363.01.T01 AT5G06950 46.552 116 56 1 116 225 200 315 4.66e-21 90.1
MsG0480023363.01.T01 AT5G06950 71.739 46 13 0 71 116 46 91 1.86e-12 65.9
MsG0480023363.01.T01 AT5G06950 46.552 116 56 1 116 225 200 315 4.66e-21 90.1
MsG0480023363.01.T01 AT5G06950 71.739 46 13 0 71 116 46 91 1.86e-12 65.9
MsG0480023363.01.T01 AT5G06950 46.552 116 56 1 116 225 200 315 4.66e-21 90.1
MsG0480023363.01.T01 AT5G06950 71.739 46 13 0 71 116 46 91 1.86e-12 65.9
MsG0480023363.01.T01 AT5G06950 46.552 116 56 1 116 225 200 315 4.66e-21 90.1
MsG0480023363.01.T01 AT5G06950 71.739 46 13 0 71 116 46 91 1.86e-12 65.9
MsG0480023363.01.T01 AT5G06950 46.552 116 56 1 116 225 200 315 4.66e-21 90.1
MsG0480023363.01.T01 AT5G06950 71.739 46 13 0 71 116 46 91 1.86e-12 65.9
MsG0480023363.01.T01 AT3G12250 47.273 110 52 1 116 219 173 282 8.78e-20 86.3
MsG0480023363.01.T01 AT3G12250 64.706 51 18 0 66 116 14 64 1.61e-12 65.9
MsG0480023363.01.T01 AT3G12250 47.273 110 52 1 116 219 200 309 1.11e-19 86.3
MsG0480023363.01.T01 AT3G12250 64.706 51 18 0 66 116 41 91 1.70e-12 65.9
MsG0480023363.01.T01 AT3G12250 47.273 110 52 1 116 219 200 309 1.11e-19 86.3
MsG0480023363.01.T01 AT3G12250 64.706 51 18 0 66 116 41 91 1.70e-12 65.9
MsG0480023363.01.T01 AT3G12250 47.273 110 52 1 116 219 200 309 1.11e-19 86.3
MsG0480023363.01.T01 AT3G12250 64.706 51 18 0 66 116 41 91 1.70e-12 65.9
MsG0480023363.01.T01 AT3G12250 47.273 110 52 1 116 219 200 309 1.11e-19 86.3
MsG0480023363.01.T01 AT3G12250 64.706 51 18 0 66 116 41 91 1.70e-12 65.9
MsG0480023363.01.T01 AT3G12250 47.273 110 52 1 116 219 194 303 1.19e-19 85.9
MsG0480023363.01.T01 AT3G12250 64.706 51 18 0 66 116 35 85 1.74e-12 65.9
MsG0480023363.01.T01 AT3G12250 47.273 110 52 1 116 219 225 334 2.05e-19 85.9
MsG0480023363.01.T01 AT3G12250 64.706 51 18 0 66 116 66 116 1.64e-12 66.2
MsG0480023363.01.T01 AT5G06839 38.655 119 64 1 116 225 325 443 5.80e-17 79.3
MsG0480023363.01.T01 AT5G06839 66.667 51 17 0 61 111 151 201 6.72e-14 70.5
MsG0480023363.01.T01 AT5G06839 38.655 119 64 1 116 225 282 400 6.01e-17 79.3
MsG0480023363.01.T01 AT5G06839 66.667 51 17 0 61 111 108 158 8.31e-14 70.1
MsG0480023363.01.T01 AT5G06839 38.655 119 64 1 116 225 283 401 6.09e-17 79.3
MsG0480023363.01.T01 AT5G06839 66.667 51 17 0 61 111 108 158 8.41e-14 70.1
MsG0480023363.01.T01 AT1G68640 44.037 109 55 1 116 218 322 430 2.19e-14 72.0
MsG0480023363.01.T01 AT1G68640 53.571 56 26 0 61 116 156 211 3.46e-11 62.4

Find 43 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATATTTAACTTCATTTC+AGG 0.170609 4:-84206899 None:intergenic
CCCATACACCATTTACTATA+TGG 0.180497 4:+84206834 MsG0480023363.01.T01:CDS
TAAGAGTCGTTTGAAGAAAA+AGG 0.214551 4:+84207683 MsG0480023363.01.T01:CDS
TCTGTCAATGGTTCAATTAA+AGG 0.231131 4:-84209248 None:intergenic
CTGCTCGATGGCTGCTTGCT+TGG 0.244109 4:+84209774 MsG0480023363.01.T01:CDS
TAGTAACTGTGTTAGCTTCT+TGG 0.278886 4:-84207076 None:intergenic
TGTTCTTCCCATATAGTAAA+TGG 0.289321 4:-84206842 None:intergenic
TAGTCAGAGGATGCTTCTTT+TGG 0.297753 4:+84207024 MsG0480023363.01.T01:intron
TCAGTTTCCTCAAGAAATAT+TGG 0.311717 4:+84206800 MsG0480023363.01.T01:CDS
TGCTCGATGGCTGCTTGCTT+GGG 0.349834 4:+84209775 MsG0480023363.01.T01:CDS
GCATGACTTCTCAAGATTAT+AGG 0.355362 4:-84209288 None:intergenic
CTGAAATGAAGTTAAATATC+AGG 0.361320 4:+84206900 MsG0480023363.01.T01:CDS
AGCTAACACAGTTACTAATA+AGG 0.363384 4:+84207082 MsG0480023363.01.T01:CDS
GTGTCGTTTAAAGCTGTTAC+AGG 0.364560 4:+84207804 MsG0480023363.01.T01:CDS
CCCATATAGTAAATGGTGTA+TGG 0.371334 4:-84206835 None:intergenic
CCATACACCATTTACTATAT+GGG 0.401188 4:+84206835 MsG0480023363.01.T01:CDS
AATAGAGAGGCTGGAAGCTC+TGG 0.410741 4:+84209427 MsG0480023363.01.T01:CDS
CTGTCAATGGTTCAATTAAA+GGG 0.420015 4:-84209247 None:intergenic
AACCGTTGTTCCTCTGTCAA+TGG 0.441867 4:-84209260 None:intergenic
GTGAATACTTTCAACGCCTA+AGG 0.464354 4:+84209797 MsG0480023363.01.T01:CDS
AGATGCCCTTTCACAAGGTA+TGG 0.480625 4:+84209322 MsG0480023363.01.T01:CDS
AGAGCTAGATCATACAAAAC+AGG 0.481991 4:+84207834 MsG0480023363.01.T01:CDS
GGATATTGCAATAGAGAGGC+TGG 0.484290 4:+84209418 MsG0480023363.01.T01:CDS
AAAGGGCATCTTCTGCTTGT+CGG 0.484492 4:-84209310 None:intergenic
TAACTGTGTTAGCTTCTTGG+TGG 0.484546 4:-84207073 None:intergenic
TCTGGCTAGCTTTGTGAACC+AGG 0.487895 4:+84209445 MsG0480023363.01.T01:CDS
CTTGTTGACACAGTTGCAGC+AGG 0.514923 4:+84209362 MsG0480023363.01.T01:CDS
CCATATAGTAAATGGTGTAT+GGG 0.525859 4:-84206834 None:intergenic
TGAATACTTTCAACGCCTAA+GGG 0.549102 4:+84209798 MsG0480023363.01.T01:CDS
ACAGGCTGATCATCTTCGAC+AGG 0.558370 4:+84209709 MsG0480023363.01.T01:intron
GAGGAAACTGAAGATGATGA+AGG 0.561032 4:-84206788 None:intergenic
GAAGAACATTTCAAGAGTAA+TGG 0.562707 4:+84206857 MsG0480023363.01.T01:CDS
ATATACACCAATATTTCTTG+AGG 0.577964 4:-84206807 None:intergenic
CCGTACGTCAAACTGCTCGA+TGG 0.578154 4:+84209762 MsG0480023363.01.T01:CDS
AGGAACTTACATTCCACAGA+TGG 0.589738 4:+84209397 MsG0480023363.01.T01:CDS
AACCATTGACAGAGGAACAA+CGG 0.614266 4:+84209258 MsG0480023363.01.T01:CDS
GCAGAAGATGCCCTTTCACA+AGG 0.620831 4:+84209317 MsG0480023363.01.T01:CDS
TTTAATTGAACCATTGACAG+AGG 0.625048 4:+84209250 MsG0480023363.01.T01:CDS
CCATCGAGCAGTTTGACGTA+CGG 0.630335 4:-84209762 None:intergenic
TCTATTGCAATATCCATCTG+TGG 0.636700 4:-84209410 None:intergenic
GCAGCAGGACAACTCGTCGA+AGG 0.643270 4:+84209377 MsG0480023363.01.T01:CDS
AGATGGATATTGCAATAGAG+AGG 0.647680 4:+84209414 MsG0480023363.01.T01:CDS
ACGTCTCGCACAAAATCGAG+AGG 0.680873 4:+84207653 MsG0480023363.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAACAAAATTTATTAGA+GGG + Chr4:84208534-84208553 MsG0480023363.01.T01:intron 15.0%
!! TAAGTAACAAAATTTATTAG+AGG + Chr4:84208533-84208552 MsG0480023363.01.T01:intron 15.0%
!! TTGACAATAATAAACTTAAT+TGG - Chr4:84209689-84209708 None:intergenic 15.0%
!!! TGATATATAATATTAGCTTT+GGG + Chr4:84208766-84208785 MsG0480023363.01.T01:intron 15.0%
!!! TTGATATATAATATTAGCTT+TGG + Chr4:84208765-84208784 MsG0480023363.01.T01:intron 15.0%
!! AACATTAATTAAAGAAAGGA+GGG - Chr4:84208388-84208407 None:intergenic 20.0%
!! AAGCAACATTAATTAAAGAA+AGG - Chr4:84208392-84208411 None:intergenic 20.0%
!! AATATATAACATACATTACC+TGG - Chr4:84209466-84209485 None:intergenic 20.0%
!! ACAAGTAAAATTTAGTAACT+TGG - Chr4:84206933-84206952 None:intergenic 20.0%
!! ACACAAATTACCAATTAAAA+AGG + Chr4:84209637-84209656 MsG0480023363.01.T01:intron 20.0%
!! ATATCAGTGATATACAAATT+GGG + Chr4:84208957-84208976 MsG0480023363.01.T01:intron 20.0%
!! TAAGTTTATTATTGTCAAAC+AGG + Chr4:84209691-84209710 MsG0480023363.01.T01:intron 20.0%
!! TCCTTTAACAAAATTTCAAA+TGG - Chr4:84207407-84207426 None:intergenic 20.0%
!!! AAACTTTGAGAAAATTCTTT+AGG + Chr4:84208184-84208203 MsG0480023363.01.T01:intron 20.0%
!!! ACCATTTGAAATTTTGTTAA+AGG + Chr4:84207403-84207422 MsG0480023363.01.T01:intron 20.0%
!!! AGAAATAACAACTTTTAAGA+TGG + Chr4:84208868-84208887 MsG0480023363.01.T01:intron 20.0%
!!! AGTTGTTATTTCTGTAAATT+AGG - Chr4:84208861-84208880 None:intergenic 20.0%
!!! GAAATTTTGGAAGAAATTAT+TGG - Chr4:84208615-84208634 None:intergenic 20.0%
!!! TTTTTATAAAGCAAAAGCAA+AGG - Chr4:84208245-84208264 None:intergenic 20.0%
! ACTTACTGCAGATATATATT+TGG + Chr4:84208264-84208283 MsG0480023363.01.T01:intron 25.0%
! ATATACACCAATATTTCTTG+AGG - Chr4:84206810-84206829 None:intergenic 25.0%
! CAAAAAAGTGATTTCATCAT+AGG - Chr4:84208090-84208109 None:intergenic 25.0%
! CAACATTAATTAAAGAAAGG+AGG - Chr4:84208389-84208408 None:intergenic 25.0%
! CATATCAGTGATATACAAAT+TGG + Chr4:84208956-84208975 MsG0480023363.01.T01:intron 25.0%
! CCAATTAAAAAGGTTAAACT+AGG + Chr4:84209647-84209666 MsG0480023363.01.T01:intron 25.0%
! CGTATAATTTAGATTAGATG+AGG + Chr4:84209490-84209509 MsG0480023363.01.T01:intron 25.0%
! CTGAAATGAAGTTAAATATC+AGG + Chr4:84206900-84206919 MsG0480023363.01.T01:CDS 25.0%
! GATATTGAACAATATGAAGT+AGG - Chr4:84207888-84207907 None:intergenic 25.0%
! GGATTGGATTCTAATAATTT+AGG + Chr4:84207976-84207995 MsG0480023363.01.T01:intron 25.0%
! TATCAGTGATATACAAATTG+GGG + Chr4:84208958-84208977 MsG0480023363.01.T01:intron 25.0%
!! CCTAGTTTAACCTTTTTAAT+TGG - Chr4:84209650-84209669 None:intergenic 25.0%
!! CTGATATTTAACTTCATTTC+AGG - Chr4:84206902-84206921 None:intergenic 25.0%
!! TTCAATCACATAATCCATTT+TGG + Chr4:84207329-84207348 MsG0480023363.01.T01:intron 25.0%
!!! GTTGGTTTGTTATTAAATTC+TGG + Chr4:84208022-84208041 MsG0480023363.01.T01:intron 25.0%
!!! TCTAATAATTTAGGTTTTGC+TGG + Chr4:84207985-84208004 MsG0480023363.01.T01:intron 25.0%
!!! TCTATTCTCAAACTAGTTTT+TGG + Chr4:84208823-84208842 MsG0480023363.01.T01:intron 25.0%
!!! TGCGTTTTTTTATGCTTATA+AGG + Chr4:84207607-84207626 MsG0480023363.01.T01:intron 25.0%
!!! TGTATGGACTATTTTTTACA+CGG + Chr4:84207252-84207271 MsG0480023363.01.T01:intron 25.0%
AACCTACAAAATCAACTACA+AGG + Chr4:84208153-84208172 MsG0480023363.01.T01:intron 30.0%
ACCTACAAAATCAACTACAA+GGG + Chr4:84208154-84208173 MsG0480023363.01.T01:intron 30.0%
AGAATAGAGTTCAATACAAG+AGG - Chr4:84208811-84208830 None:intergenic 30.0%
AGACAAATGTTGGAATTGAA+AGG + Chr4:84208920-84208939 MsG0480023363.01.T01:intron 30.0%
AGCTAACACAGTTACTAATA+AGG + Chr4:84207082-84207101 MsG0480023363.01.T01:CDS 30.0%
ATCGATATACTTGATCAACA+TGG + Chr4:84209152-84209171 MsG0480023363.01.T01:intron 30.0%
ATTCCAACATTTGTCTGTTT+AGG - Chr4:84208916-84208935 None:intergenic 30.0%
ATTGCTCAATCAGTATTTCA+TGG + Chr4:84207432-84207451 MsG0480023363.01.T01:intron 30.0%
CCATACACCATTTACTATAT+GGG + Chr4:84206835-84206854 MsG0480023363.01.T01:CDS 30.0%
CCATATAGTAAATGGTGTAT+GGG - Chr4:84206837-84206856 None:intergenic 30.0%
CTAAGTTTCTACAAAGTTTG+AGG - Chr4:84207492-84207511 None:intergenic 30.0%
CTGTCAATGGTTCAATTAAA+GGG - Chr4:84209250-84209269 None:intergenic 30.0%
GAAGAACATTTCAAGAGTAA+TGG + Chr4:84206857-84206876 MsG0480023363.01.T01:CDS 30.0%
GAATCAAATGCTTGTTTGTT+TGG - Chr4:84207744-84207763 None:intergenic 30.0%
TAAGAGTCGTTTGAAGAAAA+AGG + Chr4:84207683-84207702 MsG0480023363.01.T01:CDS 30.0%
TACTGCAGATATATATTTGG+TGG + Chr4:84208267-84208286 MsG0480023363.01.T01:intron 30.0%
TCAGTTTCCTCAAGAAATAT+TGG + Chr4:84206800-84206819 MsG0480023363.01.T01:CDS 30.0%
TCCATACATGTTTGATATGA+CGG - Chr4:84207240-84207259 None:intergenic 30.0%
TCGATATACTTGATCAACAT+GGG + Chr4:84209153-84209172 MsG0480023363.01.T01:intron 30.0%
TCTGTCAATGGTTCAATTAA+AGG - Chr4:84209251-84209270 None:intergenic 30.0%
TGGATTCAGAGTTTCAAAAT+TGG - Chr4:84208595-84208614 None:intergenic 30.0%
TGTTCTTCCCATATAGTAAA+TGG - Chr4:84206845-84206864 None:intergenic 30.0%
TTAATGCAGAGAGAAATGTT+TGG + Chr4:84208500-84208519 MsG0480023363.01.T01:intron 30.0%
TTGAACTTAACATTGCACAT+GGG - Chr4:84207281-84207300 None:intergenic 30.0%
TTTAATTGAACCATTGACAG+AGG + Chr4:84209250-84209269 MsG0480023363.01.T01:CDS 30.0%
! AGAGAGAAATGTTTGGAATA+AGG + Chr4:84208507-84208526 MsG0480023363.01.T01:intron 30.0%
! GATGTTTTCTATGTTATCAC+TGG + Chr4:84209048-84209067 MsG0480023363.01.T01:intron 30.0%
! GTTGATCAAGTATATCGATT+AGG - Chr4:84209151-84209170 None:intergenic 30.0%
! GTTTGAAATAGTGATTCATG+AGG - Chr4:84208997-84209016 None:intergenic 30.0%
! TGGGTTGAACAAAATTAATG+TGG - Chr4:84207217-84207236 None:intergenic 30.0%
! TTCCAAAATTTCAAGTAAGC+TGG + Chr4:84208623-84208642 MsG0480023363.01.T01:intron 30.0%
! TTTGAGGCATAAGAAAGAAT+GGG - Chr4:84207476-84207495 None:intergenic 30.0%
! TTTTTCCATACCTTGTGAAA+GGG - Chr4:84209330-84209349 None:intergenic 30.0%
!! AGTTTTATCAGAAGTATGCA+TGG + Chr4:84209588-84209607 MsG0480023363.01.T01:intron 30.0%
!!! AGCATTTTAGAACCACATTT+TGG + Chr4:84207525-84207544 MsG0480023363.01.T01:intron 30.0%
!!! GTATGGACTATTTTTTACAC+GGG + Chr4:84207253-84207272 MsG0480023363.01.T01:intron 30.0%
!!! TATGGACTATTTTTTACACG+GGG + Chr4:84207254-84207273 MsG0480023363.01.T01:intron 30.0%
AAAAGTCGACCAATCTGAAA+GGG + Chr4:84207352-84207371 MsG0480023363.01.T01:intron 35.0%
ACAAGAGGAAAACATACTCA+AGG - Chr4:84208796-84208815 None:intergenic 35.0%
ACAAGGTATGGAAAAACTAC+AGG + Chr4:84209334-84209353 MsG0480023363.01.T01:CDS 35.0%
ACATCCAAAATTTGGAAGCA+GGG - Chr4:84207581-84207600 None:intergenic 35.0%
ACCGTCATATCAAACATGTA+TGG + Chr4:84207236-84207255 MsG0480023363.01.T01:intron 35.0%
AGACCTAAACAGACAAATGT+TGG + Chr4:84208910-84208929 MsG0480023363.01.T01:intron 35.0%
AGAGCTAGATCATACAAAAC+AGG + Chr4:84207834-84207853 MsG0480023363.01.T01:CDS 35.0%
AGATGGATATTGCAATAGAG+AGG + Chr4:84209414-84209433 MsG0480023363.01.T01:CDS 35.0%
ATACATGTTTGATATGACGG+TGG - Chr4:84207237-84207256 None:intergenic 35.0%
ATGTTTGTGATGAGATTTGC+AGG + Chr4:84209217-84209236 MsG0480023363.01.T01:intron 35.0%
CAAAATTGCAGGGATTGTAT+TGG + Chr4:84207949-84207968 MsG0480023363.01.T01:intron 35.0%
CAAATTGGGGAACTTGTAAA+TGG + Chr4:84208971-84208990 MsG0480023363.01.T01:intron 35.0%
CAAGGTATGGAAAAACTACA+GGG + Chr4:84209335-84209354 MsG0480023363.01.T01:CDS 35.0%
CACAAACATACATTATGCCA+TGG - Chr4:84209206-84209225 None:intergenic 35.0%
CATCAAGAGATTGACAAATG+AGG - Chr4:84207926-84207945 None:intergenic 35.0%
CCCATACACCATTTACTATA+TGG + Chr4:84206834-84206853 MsG0480023363.01.T01:CDS 35.0%
CCCATATAGTAAATGGTGTA+TGG - Chr4:84206838-84206857 None:intergenic 35.0%
CTTGATGCAACAAAATTGCA+GGG + Chr4:84207939-84207958 MsG0480023363.01.T01:intron 35.0%
GCATGACTTCTCAAGATTAT+AGG - Chr4:84209291-84209310 None:intergenic 35.0%
GTCGTTTGAAGAAAAAGGTT+TGG + Chr4:84207688-84207707 MsG0480023363.01.T01:intron 35.0%
GTTGAACTTAACATTGCACA+TGG - Chr4:84207282-84207301 None:intergenic 35.0%
TAAAACTTATACTCCTGCCA+TGG - Chr4:84209575-84209594 None:intergenic 35.0%
TAAGATGGAGTATGAACACT+GGG + Chr4:84208883-84208902 MsG0480023363.01.T01:intron 35.0%
TACATGTTTGATATGACGGT+GGG - Chr4:84207236-84207255 None:intergenic 35.0%
TCTATTGCAATATCCATCTG+TGG - Chr4:84209413-84209432 None:intergenic 35.0%
TCTTGATGCAACAAAATTGC+AGG + Chr4:84207938-84207957 MsG0480023363.01.T01:intron 35.0%
TGCTAAATACCTATAGTCAG+AGG + Chr4:84207011-84207030 MsG0480023363.01.T01:intron 35.0%
TGTCACTGCTCTTATAAATG+TGG + Chr4:84208060-84208079 MsG0480023363.01.T01:intron 35.0%
TTAAGATGGAGTATGAACAC+TGG + Chr4:84208882-84208901 MsG0480023363.01.T01:intron 35.0%
TTAGACACTACATTCTGTTC+TGG + Chr4:84208742-84208761 MsG0480023363.01.T01:intron 35.0%
TTAGATGAGGTTATGAGTAG+TGG + Chr4:84209503-84209522 MsG0480023363.01.T01:intron 35.0%
TTCACACCAAAAATTTCCAC+AGG - Chr4:84208567-84208586 None:intergenic 35.0%
! ACTACTCCTGTGGAAATTTT+TGG + Chr4:84208558-84208577 MsG0480023363.01.T01:intron 35.0%
! AGCCAGCTTACTTGAAATTT+TGG - Chr4:84208628-84208647 None:intergenic 35.0%
! AGGTGTTACCTTTAGAAGTT+CGG - Chr4:84209131-84209150 None:intergenic 35.0%
! GTTTGAGGCATAAGAAAGAA+TGG - Chr4:84207477-84207496 None:intergenic 35.0%
! GTTTTTCCATACCTTGTGAA+AGG - Chr4:84209331-84209350 None:intergenic 35.0%
! TAGTAACTGTGTTAGCTTCT+TGG - Chr4:84207079-84207098 None:intergenic 35.0%
! TGCAGATATATATTTGGTGG+TGG + Chr4:84208270-84208289 MsG0480023363.01.T01:intron 35.0%
! TTGTCGCTTCAACATAATCA+AGG + Chr4:84207189-84207208 MsG0480023363.01.T01:intron 35.0%
!! ATTGGTCGACTTTTCCAAAA+TGG - Chr4:84207346-84207365 None:intergenic 35.0%
!! TCCCTTGTAGTTGATTTTGT+AGG - Chr4:84208158-84208177 None:intergenic 35.0%
!!! GGATGCTTCTTTTGGAATAT+TGG + Chr4:84207032-84207051 MsG0480023363.01.T01:CDS 35.0%
AAAAGGATTTGAGTAGCTGC+TGG - Chr4:84208335-84208354 None:intergenic 40.0%
AACCATTGACAGAGGAACAA+CGG + Chr4:84209258-84209277 MsG0480023363.01.T01:CDS 40.0%
AATTGCAGGGATTGTATTGG+TGG + Chr4:84207952-84207971 MsG0480023363.01.T01:intron 40.0%
ACAGTGAGGTCATTGCTAAA+AGG - Chr4:84208352-84208371 None:intergenic 40.0%
AGGAACTTACATTCCACAGA+TGG + Chr4:84209397-84209416 MsG0480023363.01.T01:CDS 40.0%
ATGTGGAAAACAACAGCTGA+AGG + Chr4:84209072-84209091 MsG0480023363.01.T01:intron 40.0%
CAAGCCAGACATCCAAAATT+TGG - Chr4:84207589-84207608 None:intergenic 40.0%
CATCCAAAATTTGGAAGCAG+GGG - Chr4:84207580-84207599 None:intergenic 40.0%
GAAAAGTCGACCAATCTGAA+AGG + Chr4:84207351-84207370 MsG0480023363.01.T01:intron 40.0%
GACACAACAGTTATGAGTAG+TGG + Chr4:84209535-84209554 MsG0480023363.01.T01:intron 40.0%
GACATCCAAAATTTGGAAGC+AGG - Chr4:84207582-84207601 None:intergenic 40.0%
GAGGAAACTGAAGATGATGA+AGG - Chr4:84206791-84206810 None:intergenic 40.0%
GAGTATCTGAATGTACAGTG+AGG - Chr4:84208366-84208385 None:intergenic 40.0%
GATTCCTGACGTTTCATAAC+AGG + Chr4:84207759-84207778 MsG0480023363.01.T01:intron 40.0%
TATGTTGAAGCGACAAAGTG+CGG - Chr4:84207185-84207204 None:intergenic 40.0%
TCTATGTTATCACTGGCATG+TGG + Chr4:84209055-84209074 MsG0480023363.01.T01:intron 40.0%
TGCAAAGTGAGTCCAAAATG+TGG - Chr4:84207540-84207559 None:intergenic 40.0%
TGGAAAACAATGCTGATCCA+TGG + Chr4:84209555-84209574 MsG0480023363.01.T01:intron 40.0%
TGTGGAAAACAACAGCTGAA+GGG + Chr4:84209073-84209092 MsG0480023363.01.T01:intron 40.0%
! AAGGGGTTTTTCTTGTGGAT+TGG + Chr4:84209091-84209110 MsG0480023363.01.T01:intron 40.0%
! CTGCTGTCATATTTCTACCA+TGG + Chr4:84209186-84209205 MsG0480023363.01.T01:intron 40.0%
! GCTTCCAAATTTTGGATGTC+TGG + Chr4:84207582-84207601 MsG0480023363.01.T01:intron 40.0%
! GTTACCTTTAGAAGTTCGGA+GGG - Chr4:84209127-84209146 None:intergenic 40.0%
! TAACTGTGTTAGCTTCTTGG+TGG - Chr4:84207076-84207095 None:intergenic 40.0%
! TAGTCAGAGGATGCTTCTTT+TGG + Chr4:84207024-84207043 MsG0480023363.01.T01:intron 40.0%
! TGTTACCTTTAGAAGTTCGG+AGG - Chr4:84209128-84209147 None:intergenic 40.0%
! TTGCTACTTGCTTGATATCG+CGG + Chr4:84207115-84207134 MsG0480023363.01.T01:intron 40.0%
!! AAGAAGCATCCTCTGACTAT+AGG - Chr4:84207023-84207042 None:intergenic 40.0%
!! GTGTCGTTTAAAGCTGTTAC+AGG + Chr4:84207804-84207823 MsG0480023363.01.T01:CDS 40.0%
!! TTTGCTGGCTCTGTAAATTC+AGG + Chr4:84208000-84208019 MsG0480023363.01.T01:intron 40.0%
AAACAATGCTGATCCATGGC+AGG + Chr4:84209559-84209578 MsG0480023363.01.T01:intron 45.0%
AACCGTTGTTCCTCTGTCAA+TGG - Chr4:84209263-84209282 None:intergenic 45.0%
ACTTTGCACTGCAGATTAGG+AGG + Chr4:84207552-84207571 MsG0480023363.01.T01:intron 45.0%
AGATGCCCTTTCACAAGGTA+TGG + Chr4:84209322-84209341 MsG0480023363.01.T01:CDS 45.0%
AGGCCAATAAGCCCTAGTTT+AGG - Chr4:84208297-84208316 None:intergenic 45.0%
CTCACTTTGCACTGCAGATT+AGG + Chr4:84207549-84207568 MsG0480023363.01.T01:intron 45.0%
CTTTGCACTGCAGATTAGGA+GGG + Chr4:84207553-84207572 MsG0480023363.01.T01:intron 45.0%
GCAAAGGACATGCATGCAAA+AGG - Chr4:84208229-84208248 None:intergenic 45.0%
GCTATTATGTACCTAGTGGC+AGG + Chr4:84208645-84208664 MsG0480023363.01.T01:intron 45.0%
GCTGGCTATTATGTACCTAG+TGG + Chr4:84208641-84208660 MsG0480023363.01.T01:intron 45.0%
GGACCTAAACTAGGGCTTAT+TGG + Chr4:84208291-84208310 MsG0480023363.01.T01:intron 45.0%
GGATATTGCAATAGAGAGGC+TGG + Chr4:84209418-84209437 MsG0480023363.01.T01:CDS 45.0%
GTGATGAGATTTGCAGGTTC+TGG + Chr4:84209223-84209242 MsG0480023363.01.T01:intron 45.0%
GTGGAAAACAACAGCTGAAG+GGG + Chr4:84209074-84209093 MsG0480023363.01.T01:intron 45.0%
TGAGCCTGTTATGAAACGTC+AGG - Chr4:84207766-84207785 None:intergenic 45.0%
! AGCTGAAGGGGTTTTTCTTG+TGG + Chr4:84209086-84209105 MsG0480023363.01.T01:intron 45.0%
!! AAAGGGCATCTTCTGCTTGT+CGG - Chr4:84209313-84209332 None:intergenic 45.0%
!! ATTAGAGGGTACTACTCCTG+TGG + Chr4:84208548-84208567 MsG0480023363.01.T01:intron 45.0%
!! CTGGCTCTGTAAATTCAGGT+TGG + Chr4:84208004-84208023 MsG0480023363.01.T01:intron 45.0%
!! GGATTGTATTGGTGGTGGAT+TGG + Chr4:84207960-84207979 MsG0480023363.01.T01:intron 45.0%
!! TTGGTGGTGGACCTAAACTA+GGG + Chr4:84208283-84208302 MsG0480023363.01.T01:intron 45.0%
!! TTTGGTGGTGGACCTAAACT+AGG + Chr4:84208282-84208301 MsG0480023363.01.T01:intron 45.0%
!!! GGGTTTTTCTTGTGGATTGG+AGG + Chr4:84209094-84209113 MsG0480023363.01.T01:intron 45.0%
AATAGAGAGGCTGGAAGCTC+TGG + Chr4:84209427-84209446 MsG0480023363.01.T01:CDS 50.0%
ACAGGCTGATCATCTTCGAC+AGG + Chr4:84209709-84209728 MsG0480023363.01.T01:intron 50.0%
ACGTCTCGCACAAAATCGAG+AGG + Chr4:84207653-84207672 MsG0480023363.01.T01:CDS 50.0%
CCATCGAGCAGTTTGACGTA+CGG - Chr4:84209765-84209784 None:intergenic 50.0%
CTTGTTGACACAGTTGCAGC+AGG + Chr4:84209362-84209381 MsG0480023363.01.T01:CDS 50.0%
GATGGAGTATGAACACTGGG+TGG + Chr4:84208886-84208905 MsG0480023363.01.T01:intron 50.0%
GATTTGAGTAGCTGCTGGTC+TGG - Chr4:84208330-84208349 None:intergenic 50.0%
GCAGAAGATGCCCTTTCACA+AGG + Chr4:84209317-84209336 MsG0480023363.01.T01:CDS 50.0%
TCGACCCTCCGAACTTCTAA+AGG + Chr4:84209120-84209139 MsG0480023363.01.T01:intron 50.0%
TCGCATCAGCCCTTTCAGAT+TGG - Chr4:84207364-84207383 None:intergenic 50.0%
TTGTACACAGTCCTGCCACT+AGG - Chr4:84208659-84208678 None:intergenic 50.0%
! GGCTTATTGGCCTCACCATT+GGG + Chr4:84208304-84208323 MsG0480023363.01.T01:intron 50.0%
! GGTCCCCTGCTTCCAAATTT+TGG + Chr4:84207574-84207593 MsG0480023363.01.T01:intron 50.0%
! TGCAGGGATTGTATTGGTGG+TGG + Chr4:84207955-84207974 MsG0480023363.01.T01:intron 50.0%
!! TCTGGCTAGCTTTGTGAACC+AGG + Chr4:84209445-84209464 MsG0480023363.01.T01:CDS 50.0%
CCGTACGTCAAACTGCTCGA+TGG + Chr4:84209762-84209781 MsG0480023363.01.T01:CDS 55.0%
TGCTCGATGGCTGCTTGCTT+GGG + Chr4:84209775-84209794 MsG0480023363.01.T01:CDS 55.0%
! GGGCTTATTGGCCTCACCAT+TGG + Chr4:84208303-84208322 MsG0480023363.01.T01:intron 55.0%
CTGCTCGATGGCTGCTTGCT+TGG + Chr4:84209774-84209793 MsG0480023363.01.T01:CDS 60.0%
GCAGCAGGACAACTCGTCGA+AGG + Chr4:84209377-84209396 MsG0480023363.01.T01:CDS 60.0%
! TAGCTGCTGGTCTGGCCCAA+TGG - Chr4:84208322-84208341 None:intergenic 60.0%
! GCTGGTCTGGCCCAATGGTG+AGG - Chr4:84208317-84208336 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 84206782 84209817 84206782 ID=MsG0480023363.01;Name=MsG0480023363.01
Chr4 mRNA 84206782 84209817 84206782 ID=MsG0480023363.01.T01;Parent=MsG0480023363.01;Name=MsG0480023363.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|6|0|226
Chr4 exon 84206782 84206921 84206782 ID=MsG0480023363.01.T01:exon:1258;Parent=MsG0480023363.01.T01
Chr4 exon 84207031 84207103 84207031 ID=MsG0480023363.01.T01:exon:1259;Parent=MsG0480023363.01.T01
Chr4 exon 84207645 84207704 84207645 ID=MsG0480023363.01.T01:exon:1260;Parent=MsG0480023363.01.T01
Chr4 exon 84207781 84207855 84207781 ID=MsG0480023363.01.T01:exon:1261;Parent=MsG0480023363.01.T01
Chr4 exon 84209239 84209466 84209239 ID=MsG0480023363.01.T01:exon:1262;Parent=MsG0480023363.01.T01
Chr4 exon 84209713 84209817 84209713 ID=MsG0480023363.01.T01:exon:1263;Parent=MsG0480023363.01.T01
Chr4 CDS 84206782 84206921 84206782 ID=MsG0480023363.01.T01:cds;Parent=MsG0480023363.01.T01
Chr4 CDS 84207031 84207103 84207031 ID=MsG0480023363.01.T01:cds;Parent=MsG0480023363.01.T01
Chr4 CDS 84207645 84207704 84207645 ID=MsG0480023363.01.T01:cds;Parent=MsG0480023363.01.T01
Chr4 CDS 84207781 84207855 84207781 ID=MsG0480023363.01.T01:cds;Parent=MsG0480023363.01.T01
Chr4 CDS 84209239 84209466 84209239 ID=MsG0480023363.01.T01:cds;Parent=MsG0480023363.01.T01
Chr4 CDS 84209713 84209817 84209713 ID=MsG0480023363.01.T01:cds;Parent=MsG0480023363.01.T01
Gene Sequence

>MsG0480023363.01.T01

ATGGATCCTTCATCATCTTCAGTTTCCTCAAGAAATATTGGTGTATATGATTCCCATACACCATTTACTATATGGGAAGAACATTTCAAGAGTAATGGTGATACAAGTGTATATGAACCTGAAATGAAGTTAAATATCAGAGGATGCTTCTTTTGGAATATTGGAACATCTATCAAGTATGACCACCAAGAAGCTAACACAGTTACTAATAAGATGCAAAGACGTCTCGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATACAACAGTTAGAATCGTGTCGTTTAAAGCTGTTACAGGTAGAGCAAGAGCTAGATCATACAAAACAGGTTCTGGTCCCTTTAATTGAACCATTGACAGAGGAACAACGGTTTGATGCCTATAATCTTGAGAAGTCATGCCGACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTACAGGGAATGCTTGTTGACACAGTTGCAGCAGGACAACTCGTCGAAGGAACTTACATTCCACAGATGGATATTGCAATAGAGAGGCTGGAAGCTCTGGCTAGCTTTGTGAACCAGGCTGATCATCTTCGACAGGAAACGTTGCAACAGATGTCTCGAATACTTACCGTACGTCAAACTGCTCGATGGCTGCTTGCTTGGGTGAATACTTTCAACGCCTAA
Protein sequence

>MsG0480023363.01.T01

MDPSSSSVSSRNIGVYDSHTPFTIWEEHFKSNGDTSVYEPEMKLNIRGCFFWNIGTSIKYDHQEANTVTNKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLLQVEQELDHTKQVLVPLIEPLTEEQRFDAYNLEKSCRQAEDALSQGMEKLQGMLVDTVAAGQLVEGTYIPQMDIAIERLEALASFVNQADHLRQETLQQMSRILTVRQTARWLLAWVNTFNA*