AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035842.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035842.01.T01 MTR_6g090605 92.830 265 19 0 14 278 37 301 3.24e-174 486
MsG0680035842.01.T01 MTR_6g090615 88.931 262 29 0 14 275 28 289 5.79e-167 486
MsG0680035842.01.T01 MTR_8g014930 46.442 267 130 5 14 278 33 288 1.17e-68 224
MsG0680035842.01.T01 MTR_8g014930 46.442 267 130 5 14 278 33 288 1.61e-68 224
MsG0680035842.01.T01 MTR_8g014930 46.442 267 130 5 14 278 33 288 3.01e-67 224
MsG0680035842.01.T01 MTR_8g014930 46.442 267 130 5 14 278 28 283 3.26e-67 224
MsG0680035842.01.T01 MTR_2g100450 47.037 270 130 6 14 278 28 289 3.51e-67 222
MsG0680035842.01.T01 MTR_2g100450 47.037 270 130 6 14 278 28 289 1.56e-66 222
MsG0680035842.01.T01 MTR_8g015190 46.269 268 133 6 14 278 50 309 1.89e-66 222
MsG0680035842.01.T01 MTR_8g015200 45.489 266 138 4 15 278 10 270 8.15e-66 220
MsG0680035842.01.T01 MTR_8g015190 46.269 268 133 6 14 278 40 299 9.02e-66 222
MsG0680035842.01.T01 MTR_8g015190 36.538 208 97 3 14 195 1007 1205 3.95e-30 119
MsG0680035842.01.T01 MTR_8g015340 45.522 268 135 6 14 278 43 302 2.22e-65 219
MsG0680035842.01.T01 MTR_8g015150 44.776 268 138 6 14 278 23 283 5.35e-65 214
MsG0680035842.01.T01 MTR_8g015150 44.776 268 138 6 14 278 23 283 1.11e-64 214
MsG0680035842.01.T01 MTR_8g015150 44.776 268 138 6 14 278 23 283 1.11e-63 214
MsG0680035842.01.T01 MTR_8g014790 44.361 266 140 4 14 278 30 288 4.53e-63 213
MsG0680035842.01.T01 MTR_2g100470 43.173 271 139 5 14 278 14 275 1.40e-62 210
MsG0680035842.01.T01 MTR_8g014700 43.446 267 141 6 14 278 33 291 1.58e-60 203
MsG0680035842.01.T01 MTR_8g014690 43.726 263 140 4 14 275 35 290 1.62e-60 204
MsG0680035842.01.T01 MTR_8g014760 43.233 266 141 4 14 278 33 289 9.63e-60 199
MsG0680035842.01.T01 MTR_8g014690 43.726 263 140 4 14 275 28 283 1.18e-59 203
MsG0680035842.01.T01 MTR_8g014730 42.481 266 145 4 14 278 33 291 1.26e-59 200
MsG0680035842.01.T01 MTR_8g014700 43.494 269 138 7 14 278 33 291 1.36e-59 203
MsG0680035842.01.T01 MTR_8g014700 43.494 269 138 7 14 278 33 291 1.69e-59 203
MsG0680035842.01.T01 MTR_8g014760 43.233 266 141 4 14 278 33 289 2.96e-59 199
MsG0680035842.01.T01 MTR_8g014760 43.233 266 141 4 14 278 33 289 1.01e-58 199
MsG0680035842.01.T01 MTR_8g014760 43.233 266 141 4 14 278 29 285 6.63e-58 198
MsG0680035842.01.T01 MTR_8g461120 42.336 274 141 10 14 278 41 306 7.07e-55 188
MsG0680035842.01.T01 MTR_8g461120 42.336 274 141 10 14 278 41 306 3.52e-54 188
MsG0680035842.01.T01 MTR_8g461120 42.336 274 141 10 14 278 41 306 3.76e-54 188
MsG0680035842.01.T01 MTR_8g028110 41.636 269 143 7 14 276 33 293 1.98e-53 186
MsG0680035842.01.T01 MTR_8g014840 39.474 266 134 3 14 278 29 268 6.88e-53 175
MsG0680035842.01.T01 MTR_8g015010 37.294 303 152 11 5 278 41 334 1.99e-43 158
MsG0680035842.01.T01 MTR_8g015040 35.430 302 158 8 5 276 49 343 8.78e-42 153
MsG0680035842.01.T01 MTR_5g058090 37.269 271 150 8 14 273 38 299 9.87e-40 147
MsG0680035842.01.T01 MTR_8g014980 42.079 202 102 5 1 193 1 196 1.60e-38 134
MsG0680035842.01.T01 MTR_8g015100 44.318 176 86 4 5 175 46 214 5.82e-35 133
MsG0680035842.01.T01 MTR_6g071455 36.727 275 148 13 11 279 23 277 2.04e-34 130
MsG0680035842.01.T01 MTR_6g071455 36.727 275 148 13 11 279 23 277 7.64e-34 129
MsG0680035842.01.T01 MTR_1g066950 34.892 278 155 10 14 278 26 290 2.65e-30 120
MsG0680035842.01.T01 MTR_7g100630 33.591 259 134 9 10 249 28 267 4.29e-29 116
MsG0680035842.01.T01 MTR_3g086120 32.653 245 142 8 15 246 25 259 3.22e-28 114
MsG0680035842.01.T01 MTR_3g086120 32.794 247 139 9 15 246 25 259 3.38e-28 114
MsG0680035842.01.T01 MTR_7g057170 31.541 279 155 12 14 276 26 284 1.53e-21 94.7
MsG0680035842.01.T01 MTR_7g057170 31.541 279 155 12 14 276 26 284 1.86e-21 94.4
MsG0680035842.01.T01 MTR_4g086250 27.839 273 167 12 18 278 40 294 1.41e-16 79.7
MsG0680035842.01.T01 MTR_1g104850 28.520 277 162 14 14 275 25 280 4.23e-16 78.2
MsG0680035842.01.T01 MTR_2g100450 44.304 79 41 1 203 278 6 84 6.90e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035842.01.T01 AT4G29180 62.121 264 99 1 14 276 27 290 2.89e-114 350
MsG0680035842.01.T01 AT4G29180 62.121 264 99 1 14 276 27 290 3.53e-114 350
MsG0680035842.01.T01 AT4G29180 62.121 264 99 1 14 276 27 290 3.85e-114 349
MsG0680035842.01.T01 AT4G29450 62.264 265 98 2 14 276 26 290 1.76e-106 328
MsG0680035842.01.T01 AT4G29990 45.896 268 136 5 14 278 26 287 2.43e-72 236
MsG0680035842.01.T01 AT4G29990 45.896 268 136 5 14 278 26 287 9.88e-72 236
MsG0680035842.01.T01 AT2G19210 44.776 268 139 5 14 278 30 291 1.87e-69 230
MsG0680035842.01.T01 AT2G19230 44.238 269 140 6 14 278 29 291 2.32e-68 227
MsG0680035842.01.T01 AT2G19230 44.238 269 140 6 14 278 29 291 6.53e-68 228
MsG0680035842.01.T01 AT1G05700 44.689 273 128 6 14 278 30 287 1.01e-64 217
MsG0680035842.01.T01 AT1G05700 44.689 273 128 6 14 278 30 287 1.19e-64 217
MsG0680035842.01.T01 AT2G19190 42.593 270 139 7 14 276 29 289 8.37e-62 209
MsG0680035842.01.T01 AT1G51790 44.280 271 135 8 14 278 28 288 3.29e-59 202
MsG0680035842.01.T01 AT1G51790 44.280 271 135 8 14 278 28 288 3.35e-59 202
MsG0680035842.01.T01 AT1G51790 44.280 271 135 8 14 278 28 288 3.35e-59 202
MsG0680035842.01.T01 AT1G49100 41.418 268 142 7 14 277 29 285 6.63e-56 193
MsG0680035842.01.T01 AT1G51910 40.226 266 148 5 14 277 28 284 8.60e-56 192
MsG0680035842.01.T01 AT1G51880 40.226 266 149 5 13 277 27 283 5.35e-55 191
MsG0680035842.01.T01 AT1G51880 40.226 266 149 5 13 277 45 301 6.19e-55 191
MsG0680035842.01.T01 AT1G51880 40.226 266 149 5 13 277 45 301 6.31e-55 191
MsG0680035842.01.T01 AT1G51800 38.722 266 152 6 14 278 28 283 3.90e-54 188
MsG0680035842.01.T01 AT5G59680 39.483 271 145 6 14 278 28 285 1.21e-53 187
MsG0680035842.01.T01 AT2G14440 38.828 273 147 8 14 278 28 288 8.09e-51 179
MsG0680035842.01.T01 AT1G51890 38.636 264 152 5 14 276 24 278 1.02e-50 177
MsG0680035842.01.T01 AT1G07550 37.828 267 157 4 14 279 28 286 1.94e-50 177
MsG0680035842.01.T01 AT1G51890 38.636 264 152 5 14 276 24 278 2.20e-50 177
MsG0680035842.01.T01 AT1G51890 38.636 264 152 5 14 276 24 278 2.63e-50 177
MsG0680035842.01.T01 AT5G59670 37.828 267 154 6 14 278 27 283 3.49e-50 177
MsG0680035842.01.T01 AT5G59670 37.828 267 154 6 14 278 27 283 3.49e-50 177
MsG0680035842.01.T01 AT2G28990 38.868 265 152 5 14 277 24 279 5.13e-50 177
MsG0680035842.01.T01 AT2G28990 38.868 265 152 5 14 277 24 279 5.13e-50 177
MsG0680035842.01.T01 AT3G21340 40.000 270 143 9 14 277 32 288 8.95e-50 174
MsG0680035842.01.T01 AT1G51860 39.850 266 149 6 14 277 28 284 2.25e-49 175
MsG0680035842.01.T01 AT2G14510 36.330 267 161 4 14 278 36 295 2.52e-49 174
MsG0680035842.01.T01 AT2G14510 36.330 267 161 4 14 278 28 287 2.89e-49 174
MsG0680035842.01.T01 AT1G51850 38.722 266 149 7 13 277 24 276 3.38e-49 174
MsG0680035842.01.T01 AT3G21340 40.000 270 143 9 14 277 32 288 3.46e-49 174
MsG0680035842.01.T01 AT1G07560 38.060 268 152 6 14 277 29 286 1.28e-48 172
MsG0680035842.01.T01 AT5G59650 38.745 271 145 7 15 278 29 285 6.46e-48 171
MsG0680035842.01.T01 AT5G59650 38.745 271 145 7 15 278 29 285 6.60e-48 171
MsG0680035842.01.T01 AT1G51820 38.113 265 150 6 14 277 25 276 2.05e-47 169
MsG0680035842.01.T01 AT3G46400 39.033 269 149 7 14 277 27 285 2.27e-47 169
MsG0680035842.01.T01 AT1G51870 38.951 267 152 6 14 278 28 285 3.56e-47 168
MsG0680035842.01.T01 AT3G46340 39.850 266 149 6 14 277 31 287 4.74e-47 168
MsG0680035842.01.T01 AT1G51870 38.951 267 152 6 14 278 28 285 5.27e-47 168
MsG0680035842.01.T01 AT2G04300 38.433 268 152 7 14 277 31 289 5.85e-46 165
MsG0680035842.01.T01 AT2G04300 38.433 268 152 7 14 277 31 289 6.28e-46 165
MsG0680035842.01.T01 AT5G16900 38.491 265 151 7 14 276 23 277 6.42e-46 163
MsG0680035842.01.T01 AT4G20450 35.816 282 155 9 14 277 29 302 2.08e-45 164
MsG0680035842.01.T01 AT4G20450 35.816 282 155 9 14 277 29 302 2.08e-45 164
MsG0680035842.01.T01 AT5G16900 38.491 265 151 7 14 276 23 277 2.08e-45 163
MsG0680035842.01.T01 AT5G16900 38.491 265 151 7 14 276 23 277 2.08e-45 163
MsG0680035842.01.T01 AT3G46330 37.313 268 152 7 14 277 30 285 2.16e-45 163
MsG0680035842.01.T01 AT3G46330 37.313 268 152 7 14 277 30 285 2.47e-45 163
MsG0680035842.01.T01 AT2G29000 37.828 267 148 8 14 277 29 280 5.63e-45 162
MsG0680035842.01.T01 AT1G51805 36.667 270 148 10 14 277 25 277 9.65e-45 162
MsG0680035842.01.T01 AT1G51850 37.218 266 133 7 13 277 24 256 1.37e-44 161
MsG0680035842.01.T01 AT3G46420 38.722 266 152 5 14 277 28 284 1.69e-43 158
MsG0680035842.01.T01 AT3G46350 37.455 275 145 10 14 277 29 287 7.87e-43 152
MsG0680035842.01.T01 AT2G28960 38.491 265 149 7 14 277 31 282 2.38e-41 152
MsG0680035842.01.T01 AT1G51805 32.959 267 138 8 14 277 25 253 1.21e-37 141
MsG0680035842.01.T01 AT3G46370 39.000 200 116 4 79 277 2 196 4.19e-33 128
MsG0680035842.01.T01 AT3G46370 39.000 200 116 4 79 277 2 196 4.19e-33 128
MsG0680035842.01.T01 AT1G51840 40.719 167 89 4 14 179 32 189 8.47e-33 119
MsG0680035842.01.T01 AT1G51840 40.719 167 89 4 14 179 32 189 8.47e-33 119
MsG0680035842.01.T01 AT1G51840 40.719 167 89 4 14 179 32 189 8.47e-33 119
MsG0680035842.01.T01 AT1G51840 40.719 167 89 4 14 179 32 189 8.47e-33 119
MsG0680035842.01.T01 AT1G51840 40.719 167 89 4 14 179 32 189 8.47e-33 119
MsG0680035842.01.T01 AT1G67720 31.673 281 158 10 15 278 26 289 6.20e-28 113
MsG0680035842.01.T01 AT2G37050 33.571 280 156 14 14 278 27 291 3.17e-26 108
MsG0680035842.01.T01 AT2G37050 33.571 280 156 14 14 278 27 291 3.17e-26 108
MsG0680035842.01.T01 AT2G37050 33.929 280 155 15 14 278 27 291 3.52e-26 108
MsG0680035842.01.T01 AT2G37050 33.929 280 155 15 14 278 27 291 3.80e-26 108
MsG0680035842.01.T01 AT5G59660 35.025 197 97 6 71 264 42 210 1.85e-22 97.4
MsG0680035842.01.T01 AT5G48740 31.618 272 163 13 14 276 20 277 4.82e-22 96.3
MsG0680035842.01.T01 AT1G24485 28.788 264 167 8 16 275 29 275 5.42e-21 92.4
MsG0680035842.01.T01 AT1G24485 28.788 264 167 8 16 275 29 275 7.58e-21 92.0
MsG0680035842.01.T01 AT1G24485 28.788 264 167 8 16 275 29 275 8.27e-21 92.0
MsG0680035842.01.T01 AT3G19230 31.274 259 148 10 34 277 37 280 1.07e-20 92.0
MsG0680035842.01.T01 AT1G24485 28.788 264 167 8 16 275 29 275 1.12e-20 92.0
MsG0680035842.01.T01 AT2G28970 38.298 141 83 2 137 277 11 147 1.01e-19 89.4
MsG0680035842.01.T01 AT1G51860 38.732 142 82 3 137 277 3 140 1.57e-19 88.6
MsG0680035842.01.T01 AT1G51810 35.849 159 92 5 121 277 1 151 2.46e-19 88.2
MsG0680035842.01.T01 AT3G46260 29.670 273 161 11 16 275 29 283 2.96e-19 87.4
MsG0680035842.01.T01 AT3G46270 32.636 239 138 10 16 244 38 263 4.74e-19 87.0
MsG0680035842.01.T01 AT3G46270 32.636 239 138 10 16 244 30 255 4.90e-19 87.0
MsG0680035842.01.T01 AT3G46280 33.193 238 137 11 16 244 25 249 6.26e-18 83.6
MsG0680035842.01.T01 AT5G59660 28.125 256 116 8 14 264 40 232 2.62e-17 82.4
MsG0680035842.01.T01 AT5G59660 28.125 256 116 8 14 264 40 232 2.90e-17 82.0
MsG0680035842.01.T01 AT1G51890 37.209 129 77 2 148 276 90 214 1.43e-16 80.1
MsG0680035842.01.T01 AT3G46240 31.624 234 122 8 16 246 6 204 1.83e-16 79.3
MsG0680035842.01.T01 AT2G28960 33.758 157 97 4 121 277 1 150 4.68e-15 75.5
MsG0680035842.01.T01 AT1G51830 39.759 83 49 1 195 277 13 94 3.27e-13 70.1
MsG0680035842.01.T01 AT1G51830 39.759 83 49 1 195 277 6 87 3.38e-13 70.1
MsG0680035842.01.T01 AT5G16900 37.647 85 52 1 192 276 8 91 5.23e-13 69.3
MsG0680035842.01.T01 AT3G05990 27.007 274 169 12 16 275 28 284 2.81e-12 67.0

Find 38 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGTTGGTGTAAATTTC+TGG 0.160577 6:-113270593 MsG0680035842.01.T01:CDS
TATACATTGAATTTCAAATT+TGG 0.176424 6:+113270150 None:intergenic
ACGATGTTTACGATAGAATT+TGG 0.218503 6:-113270329 MsG0680035842.01.T01:CDS
TGGGACATTGGTTCATTTAA+TGG 0.238692 6:-113270369 MsG0680035842.01.T01:CDS
AAGGAATGAGAATGATAATT+TGG 0.258969 6:-113270196 MsG0680035842.01.T01:CDS
TTAATTCCTGTTTGTATGTA+AGG 0.293676 6:+113270813 None:intergenic
TCTATTTATAAAACTGAGTT+TGG 0.305953 6:-113270423 MsG0680035842.01.T01:CDS
ATAAGAGCTTCTTTCTTGTA+TGG 0.317064 6:-113270654 MsG0680035842.01.T01:CDS
AGTTCCAAAGCTGAGATAAA+AGG 0.321370 6:+113270462 None:intergenic
CAATTAATCGGTAACAGTTC+CGG 0.348124 6:+113270703 None:intergenic
CTGAGATCTGAGAGTGGATA+TGG 0.352130 6:+113270744 None:intergenic
AATGTTTGTCTTGTGAATAA+AGG 0.373692 6:-113270495 MsG0680035842.01.T01:CDS
AAAATCGATGTTAGTGAAGA+TGG 0.375185 6:-113270261 MsG0680035842.01.T01:CDS
CGATTAATTGCCGGAACAAA+AGG 0.383758 6:-113270690 MsG0680035842.01.T01:CDS
AACTGTTACCGATTAATTGC+CGG 0.390663 6:-113270699 MsG0680035842.01.T01:CDS
AAATTATCATTCTCATTCCT+TGG 0.410948 6:+113270198 None:intergenic
GAGAGTGGATATGGTAGATT+AGG 0.427233 6:+113270753 None:intergenic
TACTCTAATCGTCTCACAAT+AGG 0.462516 6:-113271524 MsG0680035842.01.T01:intron
TGCTTCAGAACAAGTTGCAT+TGG 0.463718 6:-113270550 MsG0680035842.01.T01:CDS
CCAACATAGAGATCAAATTC+AGG 0.468796 6:+113270606 None:intergenic
CCTGAATTTGATCTCTATGT+TGG 0.470869 6:-113270606 MsG0680035842.01.T01:CDS
ATTGGTTCATTTAATGGAAG+TGG 0.474592 6:-113270363 MsG0680035842.01.T01:CDS
TGTCTTGTGAATAAAGGAAA+AGG 0.476060 6:-113270489 MsG0680035842.01.T01:CDS
TTATAAATAGAACTATCAAC+TGG 0.479692 6:+113270435 None:intergenic
GATGGACCTTACATACAAAC+AGG 0.488055 6:-113270819 MsG0680035842.01.T01:CDS
GCATTGCTAATAACTTCAAA+TGG 0.500927 6:+113270228 None:intergenic
TTCTTGTATGGAAACTATGA+CGG 0.528880 6:-113270642 MsG0680035842.01.T01:CDS
TTGCTAATAACTTCAAATGG+TGG 0.546227 6:+113270231 None:intergenic
TACCGCTGAATTCCTCGTCA+TGG 0.547459 6:-113270305 MsG0680035842.01.T01:CDS
AAAATAAAATACGTCACAGA+TGG 0.549242 6:-113270837 MsG0680035842.01.T01:CDS
GGCTTCATAAGCATTGATTG+TGG 0.601577 6:-113270897 MsG0680035842.01.T01:CDS
TTCATAAGCATTGATTGTGG+TGG 0.603402 6:-113270894 MsG0680035842.01.T01:CDS
TGCATTGGAAATAATCAGCA+CGG 0.612755 6:-113270535 MsG0680035842.01.T01:CDS
GCTTATAGATTTCCATGACG+AGG 0.639249 6:+113270293 None:intergenic
TTCCATGACGAGGAATTCAG+CGG 0.651129 6:+113270303 None:intergenic
AAACTTCTGAGATCTGAGAG+TGG 0.652061 6:+113270738 None:intergenic
TAACAGTTCCGGTTTCCACG+AGG 0.660287 6:+113270714 None:intergenic
TTAGCAATGCAGCTACACCA+AGG 0.733577 6:-113270215 MsG0680035842.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTTAAAACAACTTA+TGG + Chr6:113270468-113270487 None:intergenic 10.0%
!! AATACCCTTATTAATTATAA+TGG - Chr6:113270182-113270201 MsG0680035842.01.T01:CDS 15.0%
!! TATACATTGAATTTCAAATT+TGG + Chr6:113271514-113271533 None:intergenic 15.0%
!! TATTGAAATGCAATAAATAA+GGG - Chr6:113270219-113270238 MsG0680035842.01.T01:CDS 15.0%
!! TCATCCATTATAATTAATAA+GGG + Chr6:113270189-113270208 None:intergenic 15.0%
!! TTATTGAAATGCAATAAATA+AGG - Chr6:113270218-113270237 MsG0680035842.01.T01:CDS 15.0%
!!! TCCATTTTCAAAATTATTAT+CGG - Chr6:113270623-113270642 MsG0680035842.01.T01:CDS 15.0%
!! CTCATCCATTATAATTAATA+AGG + Chr6:113270190-113270209 None:intergenic 20.0%
!! GTTGTATCTGTATTATAAAA+GGG - Chr6:113270268-113270287 MsG0680035842.01.T01:CDS 20.0%
!! TAATTGAGACAAAGAAAAAT+AGG - Chr6:113270296-113270315 MsG0680035842.01.T01:CDS 20.0%
!! TCTATTTATAAAACTGAGTT+TGG - Chr6:113271238-113271257 MsG0680035842.01.T01:intron 20.0%
!! TTATAAATAGAACTATCAAC+TGG + Chr6:113271229-113271248 None:intergenic 20.0%
!!! AATAAATAAGGGTATGTTAA+TGG - Chr6:113270230-113270249 MsG0680035842.01.T01:CDS 20.0%
!!! ACCGATAATAATTTTGAAAA+TGG + Chr6:113270627-113270646 None:intergenic 20.0%
!!! ATGATAATTTGGAATTTTCT+TGG - Chr6:113271476-113271495 MsG0680035842.01.T01:intron 20.0%
!!! ATTGTTACTTTTCAAAAGAT+GGG - Chr6:113271273-113271292 MsG0680035842.01.T01:intron 20.0%
!!! CTTTAAATTGAAAGTGTTTA+CGG - Chr6:113270527-113270546 MsG0680035842.01.T01:CDS 20.0%
!!! TTGAAAATGGAAAAGTTTTA+AGG + Chr6:113270614-113270633 None:intergenic 20.0%
!!! TTTTCAAAATTATTATCGGT+CGG - Chr6:113270627-113270646 MsG0680035842.01.T01:CDS 20.0%
! AAAATAAAATACGTCACAGA+TGG - Chr6:113270824-113270843 MsG0680035842.01.T01:CDS 25.0%
! AAATTATCATTCTCATTCCT+TGG + Chr6:113271466-113271485 None:intergenic 25.0%
! AACATCTATTATAAGATGGA+GGG - Chr6:113270325-113270344 MsG0680035842.01.T01:CDS 25.0%
! AAGGAATGAGAATGATAATT+TGG - Chr6:113271465-113271484 MsG0680035842.01.T01:intron 25.0%
! AATGTTTGTCTTGTGAATAA+AGG - Chr6:113271166-113271185 MsG0680035842.01.T01:intron 25.0%
! AGAGAACATCTATTATAAGA+TGG - Chr6:113270321-113270340 MsG0680035842.01.T01:CDS 25.0%
! ATCAATCTCATAAATTTCTC+TGG - Chr6:113270431-113270450 MsG0680035842.01.T01:CDS 25.0%
! CGTTGTATCTGTATTATAAA+AGG - Chr6:113270267-113270286 MsG0680035842.01.T01:CDS 25.0%
! TCAATCTCATAAATTTCTCT+GGG - Chr6:113270432-113270451 MsG0680035842.01.T01:CDS 25.0%
! TTAATTCCTGTTTGTATGTA+AGG + Chr6:113270851-113270870 None:intergenic 25.0%
!! ACACTTTCAATTTAAAGTGT+CGG + Chr6:113270524-113270543 None:intergenic 25.0%
!! TTCTTATCTCAGTTTTACTT+AGG - Chr6:113270379-113270398 MsG0680035842.01.T01:CDS 25.0%
!! TTTTACTTAGGATACTCTTT+GGG - Chr6:113270391-113270410 MsG0680035842.01.T01:CDS 25.0%
!!! ATCTAATTTGCTTTCTATTC+AGG - Chr6:113270743-113270762 MsG0680035842.01.T01:CDS 25.0%
!!! ATGGTAGATTAGGATTTTTT+GGG + Chr6:113270901-113270920 None:intergenic 25.0%
!!! CATTGTTACTTTTCAAAAGA+TGG - Chr6:113271272-113271291 MsG0680035842.01.T01:intron 25.0%
!!! GGAGTAATTTTTTAGTATCA+TGG - Chr6:113270346-113270365 MsG0680035842.01.T01:CDS 25.0%
!!! TATGGTAGATTAGGATTTTT+TGG + Chr6:113270902-113270921 None:intergenic 25.0%
AAAATCGATGTTAGTGAAGA+TGG - Chr6:113271400-113271419 MsG0680035842.01.T01:intron 30.0%
ACGATGTTTACGATAGAATT+TGG - Chr6:113271332-113271351 MsG0680035842.01.T01:intron 30.0%
ATAAGAGCTTCTTTCTTGTA+TGG - Chr6:113271007-113271026 MsG0680035842.01.T01:intron 30.0%
GAACATCTATTATAAGATGG+AGG - Chr6:113270324-113270343 MsG0680035842.01.T01:CDS 30.0%
GCATTGCTAATAACTTCAAA+TGG + Chr6:113271436-113271455 None:intergenic 30.0%
TCTATGTTGGTGTAAATTTC+TGG - Chr6:113271068-113271087 MsG0680035842.01.T01:intron 30.0%
TGTCTTGTGAATAAAGGAAA+AGG - Chr6:113271172-113271191 MsG0680035842.01.T01:intron 30.0%
TTCTTGTATGGAAACTATGA+CGG - Chr6:113271019-113271038 MsG0680035842.01.T01:intron 30.0%
TTGCTAATAACTTCAAATGG+TGG + Chr6:113271433-113271452 None:intergenic 30.0%
! ATTGGTTCATTTAATGGAAG+TGG - Chr6:113271298-113271317 MsG0680035842.01.T01:intron 30.0%
! GTTTTACTTAGGATACTCTT+TGG - Chr6:113270390-113270409 MsG0680035842.01.T01:CDS 30.0%
! TCTGTGTACTCAAAATTTTC+TGG + Chr6:113270794-113270813 None:intergenic 30.0%
! TGATGCTTCATACTTTTATG+TGG - Chr6:113270694-113270713 MsG0680035842.01.T01:CDS 30.0%
!! AAATTTTGAGTACACAGATG+AGG - Chr6:113270796-113270815 MsG0680035842.01.T01:CDS 30.0%
AGTTCCAAAGCTGAGATAAA+AGG + Chr6:113271202-113271221 None:intergenic 35.0%
CAATTAATCGGTAACAGTTC+CGG + Chr6:113270961-113270980 None:intergenic 35.0%
CCAACATAGAGATCAAATTC+AGG + Chr6:113271058-113271077 None:intergenic 35.0%
CCTGAATTTGATCTCTATGT+TGG - Chr6:113271055-113271074 MsG0680035842.01.T01:intron 35.0%
CGATTTGTCAATGTCATGTT+TGG - Chr6:113270656-113270675 MsG0680035842.01.T01:CDS 35.0%
TACTCTAATCGTCTCACAAT+AGG - Chr6:113270137-113270156 MsG0680035842.01.T01:CDS 35.0%
TGCATTGGAAATAATCAGCA+CGG - Chr6:113271126-113271145 MsG0680035842.01.T01:intron 35.0%
! AACTCCTTTTATCTCAGCTT+TGG - Chr6:113271195-113271214 MsG0680035842.01.T01:intron 35.0%
! AACTGTTACCGATTAATTGC+CGG - Chr6:113270962-113270981 MsG0680035842.01.T01:intron 35.0%
! ATGTAAACTGCCTTTTGTTC+CGG + Chr6:113270984-113271003 None:intergenic 35.0%
! CTTTTCAAAAGATGGGACAT+TGG - Chr6:113271280-113271299 MsG0680035842.01.T01:intron 35.0%
! CTTTTGTTCCGGCAATTAAT+CGG + Chr6:113270973-113270992 None:intergenic 35.0%
!! TGGGACATTGGTTCATTTAA+TGG - Chr6:113271292-113271311 MsG0680035842.01.T01:intron 35.0%
!! TTCATAAGCATTGATTGTGG+TGG - Chr6:113270767-113270786 MsG0680035842.01.T01:CDS 35.0%
CGATTAATTGCCGGAACAAA+AGG - Chr6:113270971-113270990 MsG0680035842.01.T01:intron 40.0%
GAGAGTGGATATGGTAGATT+AGG + Chr6:113270911-113270930 None:intergenic 40.0%
GATGGACCTTACATACAAAC+AGG - Chr6:113270842-113270861 MsG0680035842.01.T01:CDS 40.0%
GCTTATAGATTTCCATGACG+AGG + Chr6:113271371-113271390 None:intergenic 40.0%
GGATGTTGTTAAACACGTGT+TGG + Chr6:113270556-113270575 None:intergenic 40.0%
TGCTTCAGAACAAGTTGCAT+TGG - Chr6:113271111-113271130 MsG0680035842.01.T01:intron 40.0%
!! AAACTTCTGAGATCTGAGAG+TGG + Chr6:113270926-113270945 None:intergenic 40.0%
!! GGCTTCATAAGCATTGATTG+TGG - Chr6:113270764-113270783 MsG0680035842.01.T01:CDS 40.0%
CTGAGATCTGAGAGTGGATA+TGG + Chr6:113270920-113270939 None:intergenic 45.0%
TTAGCAATGCAGCTACACCA+AGG - Chr6:113271446-113271465 MsG0680035842.01.T01:intron 45.0%
TTCCATGACGAGGAATTCAG+CGG + Chr6:113271361-113271380 None:intergenic 45.0%
! GAAGTTTTCCTCGTGGAAAC+CGG - Chr6:113270939-113270958 MsG0680035842.01.T01:intron 45.0%
! GATCTCAGAAGTTTTCCTCG+TGG - Chr6:113270932-113270951 MsG0680035842.01.T01:intron 45.0%
CACATGTGTCCGTGTCATGT+TGG + Chr6:113270587-113270606 None:intergenic 50.0%
TAACAGTTCCGGTTTCCACG+AGG + Chr6:113270950-113270969 None:intergenic 50.0%
TACCGCTGAATTCCTCGTCA+TGG - Chr6:113271356-113271375 MsG0680035842.01.T01:intron 50.0%
CGCGTGACACCAACATGACA+CGG - Chr6:113270575-113270594 MsG0680035842.01.T01:CDS 55.0%
!! CGTGTCATGTTGGTGTCACG+CGG + Chr6:113270577-113270596 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 113270119 113271564 113270119 ID=MsG0680035842.01;Name=MsG0680035842.01
Chr6 mRNA 113270119 113271564 113270119 ID=MsG0680035842.01.T01;Parent=MsG0680035842.01;Name=MsG0680035842.01.T01;_AED=0.43;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|279
Chr6 exon 113271525 113271564 113271525 ID=MsG0680035842.01.T01:exon:15213;Parent=MsG0680035842.01.T01
Chr6 exon 113270119 113270918 113270119 ID=MsG0680035842.01.T01:exon:15212;Parent=MsG0680035842.01.T01
Chr6 CDS 113271525 113271564 113271525 ID=MsG0680035842.01.T01:cds;Parent=MsG0680035842.01.T01
Chr6 CDS 113270119 113270918 113270119 ID=MsG0680035842.01.T01:cds;Parent=MsG0680035842.01.T01
Gene Sequence

>MsG0680035842.01.T01

ATGGAATCTTGTAAAGAGTACTCTAATCGTCTCACAATAGGCTTCATAAGCATTGATTGTGGTGGTCCAGAAAATTTTGAGTACACAGATGAGGACACTAAAATAAAATACGTCACAGATGGACCTTACATACAAACAGGAATTAACAGAAACATTTCTTCTGACTATGCATACCCAAAAAATCCTAATCTACCATATCCACTCTCAGATCTCAGAAGTTTTCCTCGTGGAAACCGGAACTGTTACCGATTAATTGCCGGAACAAAAGGCAGTTTACATTTAATAAGAGCTTCTTTCTTGTATGGAAACTATGACGGCAAAAACAAACTGCCTGAATTTGATCTCTATGTTGGTGTAAATTTCTGGTCATCAGTGAAATTTAAGAATGCTTCAGAACAAGTTGCATTGGAAATAATCAGCACGGCAACATCAGAAGAAACAAATGTTTGTCTTGTGAATAAAGGAAAAGGAACTCCTTTTATCTCAGCTTTGGAACTTAGACCAGTTGATAGTTCTATTTATAAAACTGAGTTTGGTGATTCTGCTTCATTGTTACTTTTCAAAAGATGGGACATTGGTTCATTTAATGGAAGTGGTAGATATCAAGACGATGTTTACGATAGAATTTGGTTACCGCTGAATTCCTCGTCATGGAAATCTATAAGCACTTCTTTGAAAATCGATGTTAGTGAAGATGGATATAAACCACCATTTGAAGTTATTAGCAATGCAGCTACACCAAGGAATGAGAATGATAATTTGGAATTTTCTTGGATTTCAGATGATCCAAATTTGAAATTCAATGTATACTTGTACTTTGCAGAAGTGAGAGAAACTTAA

Protein sequence

>MsG0680035842.01.T01

MESCKEYSNRLTIGFISIDCGGPENFEYTDEDTKIKYVTDGPYIQTGINRNISSDYAYPKNPNLPYPLSDLRSFPRGNRNCYRLIAGTKGSLHLIRASFLYGNYDGKNKLPEFDLYVGVNFWSSVKFKNASEQVALEIISTATSEETNVCLVNKGKGTPFISALELRPVDSSIYKTEFGDSASLLLFKRWDIGSFNGSGRYQDDVYDRIWLPLNSSSWKSISTSLKIDVSEDGYKPPFEVISNAATPRNENDNLEFSWISDDPNLKFNVYLYFAEVRET*