Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005959.01.T01 | XP_039685961.1 | 86.458 | 384 | 28 | 5 | 1 | 364 | 1 | 380 | 0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005959.01.T01 | Q9C942 | 33.448 | 290 | 175 | 5 | 92 | 364 | 38 | 326 | 2.93E-46 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005959.01.T01 | A0A396K0S6 | 86.458 | 384 | 28 | 5 | 1 | 364 | 1 | 380 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049042.01 | MsG0180005959.01 | 0.807643 | 4.573601e-50 | 2.560939e-47 |
| MsG0180000930.01 | MsG0180005959.01 | 0.809108 | 2.226451e-50 | 1.295810e-47 |
| MsG0180001053.01 | MsG0180005959.01 | 0.813640 | 2.310967e-51 | 1.517448e-48 |
| MsG0180003130.01 | MsG0180005959.01 | 0.832589 | 8.671607e-56 | 9.736145e-53 |
| MsG0180004393.01 | MsG0180005959.01 | 0.818007 | 2.453816e-52 | 1.815079e-49 |
| MsG0180005959.01 | MsG0180005983.01 | 0.819958 | 8.835880e-53 | 6.899148e-50 |
| MsG0180005959.01 | MsG0280006433.01 | 0.832619 | 8.526849e-56 | 9.582114e-53 |
| MsG0180005959.01 | MsG0280006436.01 | 0.821853 | 3.237023e-53 | 2.664689e-50 |
| MsG0180005959.01 | MsG0280006586.01 | 0.840361 | 9.109581e-58 | 1.294471e-54 |
| MsG0180005959.01 | MsG0280007840.01 | 0.822714 | 2.043362e-53 | 1.723818e-50 |
| MsG0180005959.01 | MsG0280008271.01 | 0.843308 | 1.517812e-58 | 2.365289e-55 |
| MsG0180005959.01 | MsG0280009158.01 | 0.805458 | 1.321876e-49 | 6.997233e-47 |
| MsG0180005959.01 | MsG0280010415.01 | 0.856771 | 2.568111e-62 | 6.196376e-59 |
| MsG0180005959.01 | MsG0280011152.01 | 0.828816 | 7.284239e-55 | 7.320057e-52 |
| MsG0180005959.01 | MsG0280011350.01 | 0.825842 | 3.758998e-54 | 3.466266e-51 |
| MsG0180005959.01 | MsG0380011613.01 | 0.807119 | 5.906753e-50 | 3.262641e-47 |
| MsG0180005959.01 | MsG0380012008.01 | 0.805027 | 1.627068e-49 | 8.517582e-47 |
| MsG0180005959.01 | MsG0380013100.01 | 0.810118 | 1.351418e-50 | 8.078160e-48 |
| MsG0180005959.01 | MsG0380013278.01 | 0.803261 | 3.792400e-49 | 1.897090e-46 |
| MsG0180005959.01 | MsG0380014006.01 | -0.805664 | 1.196707e-49 | 6.368168e-47 |
| MsG0180005959.01 | MsG0380014032.01 | -0.800853 | 1.186101e-48 | 5.581459e-46 |
| MsG0180005959.01 | MsG0380014163.01 | 0.858335 | 8.844081e-63 | 2.249301e-59 |
| MsG0180005959.01 | MsG0380015935.01 | 0.805610 | 1.228209e-49 | 6.526750e-47 |
| MsG0180005959.01 | MsG0380016257.01 | 0.821542 | 3.819571e-53 | 3.116541e-50 |
| MsG0180005959.01 | MsG0380016629.01 | 0.807029 | 6.171063e-50 | 3.400867e-47 |
| MsG0180005959.01 | MsG0380016926.01 | 0.808276 | 3.353805e-50 | 1.909578e-47 |
| MsG0180005959.01 | MsG0380018026.01 | 0.835308 | 1.809493e-56 | 2.204423e-53 |
| MsG0180005959.01 | MsG0480018807.01 | 0.816771 | 4.656312e-52 | 3.329626e-49 |
| MsG0180005959.01 | MsG0480018956.01 | 0.801538 | 8.588693e-49 | 4.111988e-46 |
| MsG0180005959.01 | MsG0480019106.01 | 0.865896 | 4.233072e-65 | 1.399763e-61 |
| MsG0180005959.01 | MsG0480019107.01 | 0.861886 | 7.486399e-64 | 2.150364e-60 |
| MsG0180005959.01 | MsG0480021135.01 | 0.800050 | 1.728291e-48 | 7.968515e-46 |
| MsG0180005959.01 | MsG0480021981.01 | 0.818328 | 2.075651e-52 | 1.549015e-49 |
| MsG0180005959.01 | MsG0480021996.01 | 0.837534 | 4.910640e-57 | 6.397929e-54 |
| MsG0180005959.01 | MsG0480022486.01 | 0.823865 | 1.100234e-53 | 9.588871e-51 |
| MsG0180005959.01 | MsG0480022520.01 | 0.890834 | 6.884538e-74 | 5.885613e-70 |
| MsG0180005959.01 | MsG0480022608.01 | 0.801686 | 8.010139e-49 | 3.849243e-46 |
| MsG0180005959.01 | MsG0480022663.01 | 0.863248 | 2.851268e-64 | 8.586966e-61 |
| MsG0180005959.01 | MsG0480022974.01 | 0.845379 | 4.212103e-59 | 7.006165e-56 |
| MsG0180005959.01 | MsG0480023271.01 | 0.803270 | 3.777079e-49 | 1.889865e-46 |
| MsG0180005959.01 | MsG0480023317.01 | 0.811125 | 8.186577e-51 | 5.025807e-48 |
| MsG0180005959.01 | MsG0480023318.01 | 0.803298 | 3.727490e-49 | 1.866339e-46 |
| MsG0180005959.01 | MsG0480023363.01 | 0.824561 | 7.549231e-54 | 6.711018e-51 |
| MsG0180005959.01 | MsG0580025095.01 | 0.831617 | 1.508415e-55 | 1.645653e-52 |
| MsG0180005959.01 | MsG0580025180.01 | 0.823566 | 1.293102e-53 | 1.117417e-50 |
| MsG0180005959.01 | MsG0580027847.01 | 0.809015 | 2.332030e-50 | 1.353749e-47 |
| MsG0180005959.01 | MsG0580029555.01 | 0.845877 | 3.087980e-59 | 5.220163e-56 |
| MsG0180005959.01 | MsG0580029672.01 | 0.826133 | 3.205842e-54 | 2.980594e-51 |
| MsG0180005959.01 | MsG0580029798.01 | 0.860628 | 1.809048e-63 | 4.977124e-60 |
| MsG0180005959.01 | MsG0680034327.01 | 0.807631 | 4.599290e-50 | 2.574614e-47 |
| MsG0180005959.01 | MsG0680035842.01 | 0.839628 | 1.414429e-57 | 1.964636e-54 |
| MsG0180005959.01 | MsG0680035845.01 | 0.812106 | 5.008116e-51 | 3.155827e-48 |
| MsG0180005959.01 | MsG0780039450.01 | 0.829395 | 5.273292e-55 | 5.390595e-52 |
| MsG0180005959.01 | MsG0780039968.01 | 0.820314 | 7.325041e-53 | 5.775930e-50 |
| MsG0180005959.01 | MsG0780040060.01 | 0.810388 | 1.181405e-50 | 7.111680e-48 |
| MsG0180005959.01 | MsG0780040144.01 | 0.831216 | 1.893200e-55 | 2.040888e-52 |
| MsG0180005959.01 | MsG0780040480.01 | 0.817120 | 3.889171e-52 | 2.807627e-49 |
| MsG0180005959.01 | MsG0780041133.01 | 0.836172 | 1.093222e-56 | 1.366894e-53 |
| MsG0180005959.01 | MsG0780041589.01 | 0.832229 | 1.064660e-55 | 1.182598e-52 |
| MsG0180005959.01 | MsG0880042810.01 | 0.828977 | 6.660217e-55 | 6.723997e-52 |
| MsG0180005959.01 | MsG0880043185.01 | 0.820899 | 5.374363e-53 | 4.307466e-50 |
| MsG0180005959.01 | MsG0880043537.01 | 0.820770 | 5.753107e-53 | 4.594325e-50 |
| MsG0180005959.01 | MsG0880044652.01 | 0.804127 | 2.508166e-49 | 1.282911e-46 |
| MsG0180005959.01 | MsG0880044669.01 | 0.835698 | 1.442018e-56 | 1.777320e-53 |
| MsG0180005959.01 | MsG0880045861.01 | 0.859889 | 3.026896e-63 | 8.119313e-60 |
| MsG0180005959.01 | MsG0880046586.01 | 0.806271 | 8.919036e-50 | 4.820702e-47 |
| MsG0180005959.01 | MsG0880046832.01 | 0.815512 | 8.898732e-52 | 6.148014e-49 |
| MsG0180005959.01 | MsG0880047233.01 | 0.833214 | 6.063295e-56 | 6.936279e-53 |
| MsG0180005959.01 | MsG0880047256.01 | 0.811424 | 7.051775e-51 | 4.363536e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005959.01.T01 | MTR_1g110670 | 80.208 | 384 | 32 | 6 | 1 | 364 | 1 | 360 | 0.0 | 595 |
| MsG0180005959.01.T01 | MTR_5g056550 | 63.291 | 395 | 111 | 8 | 1 | 363 | 1 | 393 | 5.51e-176 | 494 |
| MsG0180005959.01.T01 | MTR_5g056550 | 57.975 | 395 | 99 | 9 | 1 | 363 | 1 | 360 | 2.80e-152 | 433 |
| MsG0180005959.01.T01 | MTR_7g007260 | 54.079 | 331 | 131 | 5 | 49 | 359 | 7 | 336 | 6.69e-121 | 353 |
| MsG0180005959.01.T01 | MTR_6g018490 | 51.360 | 331 | 140 | 4 | 49 | 359 | 6 | 335 | 5.86e-117 | 343 |
| MsG0180005959.01.T01 | MTR_7g007260 | 52.584 | 329 | 126 | 5 | 49 | 359 | 7 | 323 | 2.08e-114 | 336 |
| MsG0180005959.01.T01 | MTR_7g007260 | 52.727 | 330 | 125 | 6 | 49 | 359 | 7 | 324 | 2.41e-113 | 333 |
| MsG0180005959.01.T01 | MTR_6g084420 | 50.000 | 334 | 145 | 5 | 47 | 359 | 4 | 336 | 3.07e-112 | 331 |
| MsG0180005959.01.T01 | MTR_6g025610 | 55.714 | 280 | 113 | 3 | 90 | 359 | 47 | 325 | 2.41e-107 | 318 |
| MsG0180005959.01.T01 | MTR_5g056550 | 57.377 | 244 | 72 | 6 | 1 | 214 | 1 | 242 | 7.74e-94 | 281 |
| MsG0180005959.01.T01 | MTR_5g056550 | 57.377 | 244 | 72 | 6 | 1 | 214 | 1 | 242 | 9.05e-94 | 280 |
| MsG0180005959.01.T01 | MTR_1g088470 | 42.807 | 285 | 146 | 4 | 90 | 361 | 11 | 291 | 4.15e-75 | 235 |
| MsG0180005959.01.T01 | MTR_1g115535 | 42.857 | 280 | 149 | 4 | 93 | 362 | 16 | 294 | 1.22e-72 | 229 |
| MsG0180005959.01.T01 | MTR_1g115535 | 42.857 | 280 | 149 | 4 | 93 | 362 | 20 | 298 | 1.53e-72 | 229 |
| MsG0180005959.01.T01 | MTR_7g108770 | 40.636 | 283 | 150 | 5 | 90 | 359 | 11 | 288 | 3.24e-72 | 228 |
| MsG0180005959.01.T01 | MTR_4g089170 | 38.489 | 278 | 161 | 3 | 95 | 362 | 47 | 324 | 2.76e-61 | 200 |
| MsG0180005959.01.T01 | MTR_4g127220 | 34.892 | 278 | 169 | 4 | 98 | 364 | 41 | 317 | 9.89e-48 | 164 |
| MsG0180005959.01.T01 | MTR_1g095110 | 32.787 | 305 | 182 | 8 | 66 | 358 | 19 | 312 | 9.57e-47 | 162 |
| MsG0180005959.01.T01 | MTR_1g110680 | 66.667 | 108 | 32 | 1 | 257 | 364 | 4 | 107 | 1.49e-40 | 139 |
| MsG0180005959.01.T01 | MTR_6g071475 | 35.816 | 282 | 165 | 7 | 89 | 361 | 116 | 390 | 7.28e-40 | 145 |
| MsG0180005959.01.T01 | MTR_3g109870 | 32.246 | 276 | 154 | 8 | 95 | 361 | 103 | 354 | 9.07e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005959.01.T01 | AT1G77420 | 59.184 | 343 | 120 | 4 | 39 | 361 | 36 | 378 | 2.07e-140 | 404 |
| MsG0180005959.01.T01 | AT5G16120 | 53.799 | 329 | 131 | 5 | 51 | 359 | 10 | 337 | 9.57e-116 | 340 |
| MsG0180005959.01.T01 | AT5G16120 | 53.799 | 329 | 131 | 5 | 51 | 359 | 10 | 337 | 9.57e-116 | 340 |
| MsG0180005959.01.T01 | AT5G16120 | 53.799 | 329 | 131 | 5 | 51 | 359 | 28 | 355 | 2.04e-115 | 340 |
| MsG0180005959.01.T01 | AT5G16120 | 53.799 | 329 | 131 | 5 | 51 | 359 | 42 | 369 | 3.37e-115 | 340 |
| MsG0180005959.01.T01 | AT2G47630 | 40.000 | 285 | 155 | 3 | 90 | 361 | 12 | 293 | 2.36e-71 | 226 |
| MsG0180005959.01.T01 | AT2G39410 | 43.571 | 280 | 147 | 3 | 92 | 361 | 16 | 294 | 2.61e-71 | 225 |
| MsG0180005959.01.T01 | AT2G39420 | 42.553 | 282 | 151 | 3 | 92 | 363 | 16 | 296 | 3.07e-71 | 225 |
| MsG0180005959.01.T01 | AT3G62860 | 39.649 | 285 | 154 | 5 | 90 | 361 | 12 | 291 | 4.31e-71 | 226 |
| MsG0180005959.01.T01 | AT3G55180 | 42.857 | 287 | 148 | 3 | 90 | 363 | 8 | 291 | 7.22e-70 | 221 |
| MsG0180005959.01.T01 | AT1G11090 | 43.165 | 278 | 148 | 3 | 95 | 362 | 38 | 315 | 1.25e-69 | 221 |
| MsG0180005959.01.T01 | AT2G39400 | 42.254 | 284 | 147 | 4 | 93 | 363 | 11 | 290 | 1.96e-67 | 215 |
| MsG0180005959.01.T01 | AT3G62860 | 40.756 | 238 | 133 | 2 | 129 | 361 | 14 | 248 | 2.51e-63 | 204 |
| MsG0180005959.01.T01 | AT2G47630 | 40.756 | 238 | 133 | 2 | 129 | 361 | 14 | 248 | 5.27e-60 | 196 |
| MsG0180005959.01.T01 | AT2G47630 | 40.756 | 238 | 133 | 2 | 129 | 361 | 34 | 268 | 7.79e-60 | 196 |
| MsG0180005959.01.T01 | AT3G55190 | 35.336 | 283 | 171 | 4 | 92 | 363 | 16 | 297 | 3.70e-52 | 176 |
| MsG0180005959.01.T01 | AT5G14980 | 33.216 | 283 | 176 | 6 | 90 | 361 | 35 | 315 | 3.25e-48 | 166 |
| MsG0180005959.01.T01 | AT1G52760 | 33.448 | 290 | 175 | 5 | 92 | 364 | 38 | 326 | 2.99e-47 | 163 |
| MsG0180005959.01.T01 | AT5G19290 | 33.216 | 283 | 177 | 5 | 93 | 364 | 38 | 319 | 1.13e-45 | 159 |
| MsG0180005959.01.T01 | AT2G39400 | 40.000 | 215 | 112 | 4 | 93 | 294 | 11 | 221 | 7.66e-42 | 147 |
| MsG0180005959.01.T01 | AT5G11650 | 36.861 | 274 | 155 | 8 | 95 | 358 | 110 | 375 | 1.27e-41 | 150 |
| MsG0180005959.01.T01 | AT1G73480 | 34.564 | 298 | 157 | 11 | 83 | 362 | 186 | 463 | 1.01e-38 | 144 |
| MsG0180005959.01.T01 | AT1G18360 | 34.532 | 278 | 163 | 6 | 95 | 361 | 112 | 381 | 1.63e-37 | 139 |
| MsG0180005959.01.T01 | AT5G11650 | 34.197 | 193 | 112 | 6 | 95 | 277 | 110 | 297 | 1.40e-20 | 91.3 |
| MsG0180005959.01.T01 | AT2G39410 | 43.182 | 88 | 41 | 2 | 92 | 171 | 16 | 102 | 1.91e-17 | 78.2 |
Find 76 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCATTATTGATACTTCA+TGG | 0.274482 | 1:+98088273 | MsG0180005959.01.T01:CDS |
| AGGAGGTTACCATGGCATTT+TGG | 0.302834 | 1:+98088383 | MsG0180005959.01.T01:CDS |
| TTGCATTCACTCTCAGTCTC+AGG | 0.316151 | 1:-98085841 | None:intergenic |
| TTGATTGGAACGCCATGTTC+TGG | 0.338027 | 1:-98086621 | None:intergenic |
| ACCATGAGATGATGTCATTA+TGG | 0.339733 | 1:-98088437 | None:intergenic |
| GCAATGGATTTCCCAGGTTT+CGG | 0.351323 | 1:+98086812 | MsG0180005959.01.T01:CDS |
| GATTTGCCGCAATTTATATT+CGG | 0.352298 | 1:+98087313 | MsG0180005959.01.T01:CDS |
| GCTCCATGAAGTATCAATAA+TGG | 0.356305 | 1:-98088276 | None:intergenic |
| ATTTATATTCGGACAGTCAA+TGG | 0.361185 | 1:+98087324 | MsG0180005959.01.T01:CDS |
| TAAAGAAACTGGCTCACTAA+TGG | 0.370262 | 1:-98088318 | None:intergenic |
| AGAACCCGGCAAGAGAAAAT+TGG | 0.374826 | 1:+98087946 | MsG0180005959.01.T01:CDS |
| ATGCTTTCTCATAAAGAAAC+TGG | 0.376112 | 1:-98088329 | None:intergenic |
| TGCTCTTAAAGCTCATTTGA+AGG | 0.379148 | 1:+98087357 | MsG0180005959.01.T01:CDS |
| TCATCTCATGGTTAGACATT+AGG | 0.392634 | 1:+98088448 | MsG0180005959.01.T01:CDS |
| ATGACAACGACACTCCGATT+TGG | 0.395939 | 1:+98085752 | MsG0180005959.01.T01:CDS |
| TGATATTGGATTATGGTGTA+AGG | 0.399930 | 1:-98085798 | None:intergenic |
| ACAGAAGAAATTCTTTCATC+AGG | 0.403357 | 1:-98088414 | None:intergenic |
| ATTTGAAGGAACCAAATGAT+TGG | 0.414265 | 1:+98087371 | MsG0180005959.01.T01:CDS |
| GATTATGGTGTAAGGGTAAA+GGG | 0.427866 | 1:-98085790 | None:intergenic |
| GTGACTCCGTCCCAATCATT+TGG | 0.430585 | 1:-98087382 | None:intergenic |
| TGAAAGGAATTCAAGGGGAT+TGG | 0.438456 | 1:+98086575 | MsG0180005959.01.T01:CDS |
| GGTGTAAGGGTAAAGGGAAA+TGG | 0.442389 | 1:-98085784 | None:intergenic |
| ACTTGATCATATCTTATTCA+AGG | 0.446112 | 1:+98085982 | MsG0180005959.01.T01:CDS |
| TGCATTCACTCTCAGTCTCA+GGG | 0.454337 | 1:-98085840 | None:intergenic |
| CACCTTCAAATTGTAGTTGG+CGG | 0.456693 | 1:-98087849 | None:intergenic |
| GAACATGGCGTTCCAATCAA+AGG | 0.465267 | 1:+98086624 | MsG0180005959.01.T01:CDS |
| AACATGGCGTTCCAATCAAA+GGG | 0.467021 | 1:+98086625 | MsG0180005959.01.T01:CDS |
| CCTTCAGATAAACCGAAACC+TGG | 0.470797 | 1:-98086824 | None:intergenic |
| TTTGAAGGAACCAAATGATT+GGG | 0.476356 | 1:+98087372 | MsG0180005959.01.T01:CDS |
| CCAGGTTTCGGTTTATCTGA+AGG | 0.476945 | 1:+98086824 | MsG0180005959.01.T01:CDS |
| TAACACCTTCAAATTGTAGT+TGG | 0.478719 | 1:-98087852 | None:intergenic |
| GATCAAACACGATTAAGAAC+TGG | 0.479472 | 1:+98088090 | MsG0180005959.01.T01:CDS |
| GGATTATGGTGTAAGGGTAA+AGG | 0.480388 | 1:-98085791 | None:intergenic |
| TGCGGCAAATCCTTCACCTC+TGG | 0.481449 | 1:-98087301 | None:intergenic |
| CTCATCGCTGATACCTTCAA+TGG | 0.484364 | 1:-98085876 | None:intergenic |
| ATCAAGGTTAAGAGAAGCTA+TGG | 0.486484 | 1:-98085906 | None:intergenic |
| CCTTACACATTGGAGCTACA+AGG | 0.486985 | 1:-98087405 | None:intergenic |
| TACCGCCAACTACAATTTGA+AGG | 0.500805 | 1:+98087847 | MsG0180005959.01.T01:CDS |
| AGTTCAGATAGATCCTTGTA+TGG | 0.502102 | 1:-98087914 | None:intergenic |
| TTGGTTATCAGTGGTATGAA+AGG | 0.504463 | 1:+98086559 | MsG0180005959.01.T01:intron |
| TTTATATTCGGACAGTCAAT+GGG | 0.504492 | 1:+98087325 | MsG0180005959.01.T01:CDS |
| GGTTTATCTGAAGGATTACA+TGG | 0.507433 | 1:+98086833 | MsG0180005959.01.T01:CDS |
| GATATTGGATTATGGTGTAA+GGG | 0.515166 | 1:-98085797 | None:intergenic |
| GTTTATGCAATGGATTTCCC+AGG | 0.516962 | 1:+98086806 | MsG0180005959.01.T01:CDS |
| TACGAGAAGGTGCATGATCA+AGG | 0.526915 | 1:-98085922 | None:intergenic |
| TGGATTTGGTGTTTATGCAA+TGG | 0.528835 | 1:+98086796 | MsG0180005959.01.T01:CDS |
| AGTGGTATGAAAGGAATTCA+AGG | 0.543776 | 1:+98086568 | MsG0180005959.01.T01:intron |
| TCGACTAAATCATCAAAACT+TGG | 0.545949 | 1:-98086863 | None:intergenic |
| ACTTCATGGAGCAGAAGATA+AGG | 0.548587 | 1:+98088287 | MsG0180005959.01.T01:CDS |
| GACAGCTAGACCAGAGGTGA+AGG | 0.549117 | 1:+98087291 | MsG0180005959.01.T01:intron |
| GGCAAAACTATTTCCATACA+AGG | 0.558367 | 1:+98087901 | MsG0180005959.01.T01:CDS |
| ATAATTGTTCAGGTATTGCA+AGG | 0.560443 | 1:+98086759 | MsG0180005959.01.T01:intron |
| AAGACACTAAAGATCTATGA+AGG | 0.565411 | 1:+98088363 | MsG0180005959.01.T01:CDS |
| AACACGATTAAGAACTGGCA+TGG | 0.566445 | 1:+98088095 | MsG0180005959.01.T01:CDS |
| TCAAGATATTGAGTCACAGT+TGG | 0.570097 | 1:+98088134 | MsG0180005959.01.T01:CDS |
| GTGGTATGAAAGGAATTCAA+GGG | 0.572692 | 1:+98086569 | MsG0180005959.01.T01:intron |
| TATTGAGTCACAGTTGGAGA+AGG | 0.587825 | 1:+98088140 | MsG0180005959.01.T01:CDS |
| ATCTATGAAGGAGGTTACCA+TGG | 0.587933 | 1:+98088375 | MsG0180005959.01.T01:CDS |
| CTTGTCTAAAATGATGCCAA+AGG | 0.592063 | 1:+98087880 | MsG0180005959.01.T01:CDS |
| TTGATTGCCAAGATATCAGA+AGG | 0.596025 | 1:+98087819 | MsG0180005959.01.T01:intron |
| TCCATAATGACATCATCTCA+TGG | 0.596292 | 1:+98088436 | MsG0180005959.01.T01:CDS |
| AAAAGCTGGATGCCAGAACA+TGG | 0.599820 | 1:+98086609 | MsG0180005959.01.T01:CDS |
| CTGTGACTCAATATCTTGAG+TGG | 0.612313 | 1:-98088130 | None:intergenic |
| AAGGAACCAAATGATTGGGA+CGG | 0.614530 | 1:+98087376 | MsG0180005959.01.T01:CDS |
| GACTGTCCGAATATAAATTG+CGG | 0.618570 | 1:-98087319 | None:intergenic |
| CTTCAGATAAACCGAAACCT+GGG | 0.619450 | 1:-98086823 | None:intergenic |
| CGTTGTCATAGATAGCTCCA+TGG | 0.621711 | 1:-98085738 | None:intergenic |
| CTTACACATTGGAGCTACAA+GGG | 0.627744 | 1:-98087404 | None:intergenic |
| ATATTCGGACAGTCAATGGG+TGG | 0.631708 | 1:+98087328 | MsG0180005959.01.T01:CDS |
| GTTCACCTTCCAAAATGCCA+TGG | 0.645530 | 1:-98088392 | None:intergenic |
| TGTCGAACATGTCTACGAGA+AGG | 0.657476 | 1:-98085935 | None:intergenic |
| TTGCTGATGCACATGAGTGA+AGG | 0.663071 | 1:-98085960 | None:intergenic |
| TGGTATGAAAGGAATTCAAG+GGG | 0.670152 | 1:+98086570 | MsG0180005959.01.T01:CDS |
| TACATTGACAGCTAGACCAG+AGG | 0.671347 | 1:+98087285 | MsG0180005959.01.T01:intron |
| ACACTAAAGATCTATGAAGG+AGG | 0.678648 | 1:+98088366 | MsG0180005959.01.T01:CDS |
| ACATGGCGTTCCAATCAAAG+GGG | 0.730927 | 1:+98086626 | MsG0180005959.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAGCTATAGTAT+AGG | - | Chr1:98088216-98088235 | None:intergenic | 15.0% |
| !! | AAAAATATAGCTATAGTATA+GGG | - | Chr1:98088215-98088234 | None:intergenic | 15.0% |
| !!! | AAATGAAGATTAGTTTAAAA+AGG | + | Chr1:98087028-98087047 | MsG0180005959.01.T01:intron | 15.0% |
| !! | AAAATATAGCTATAGTATAG+GGG | - | Chr1:98088214-98088233 | None:intergenic | 20.0% |
| !! | ATAATCCAAGATCAATTATA+TGG | + | Chr1:98087708-98087727 | MsG0180005959.01.T01:intron | 20.0% |
| !! | GAATTCCATACAAAAATTAA+AGG | + | Chr1:98086896-98086915 | MsG0180005959.01.T01:CDS | 20.0% |
| !! | TAATCCAAGATCAATTATAT+GGG | + | Chr1:98087709-98087728 | MsG0180005959.01.T01:intron | 20.0% |
| !! | TCATTGTCATATATAATTTC+AGG | + | Chr1:98088245-98088264 | MsG0180005959.01.T01:intron | 20.0% |
| !!! | AGTTTTTTGATATTGGATTA+TGG | - | Chr1:98085808-98085827 | None:intergenic | 20.0% |
| !!! | ATTGATTTGAATAATTGTTC+AGG | + | Chr1:98086749-98086768 | MsG0180005959.01.T01:intron | 20.0% |
| !!! | TCATACCTTTAATTTTTGTA+TGG | - | Chr1:98086904-98086923 | None:intergenic | 20.0% |
| !!! | TGATGTCTATACATTAATTT+TGG | + | Chr1:98086540-98086559 | MsG0180005959.01.T01:intron | 20.0% |
| !!! | TTTGTAGAGTTTTTTGATAT+TGG | - | Chr1:98085815-98085834 | None:intergenic | 20.0% |
| ! | AAGCACTTATTAGACTATTT+GGG | - | Chr1:98086452-98086471 | None:intergenic | 25.0% |
| ! | ACTTGATCATATCTTATTCA+AGG | + | Chr1:98085982-98086001 | MsG0180005959.01.T01:CDS | 25.0% |
| ! | AGAACAAATGCATAGTTAAT+TGG | - | Chr1:98088032-98088051 | None:intergenic | 25.0% |
| ! | AGATCAATTATATGGGAAAA+TGG | + | Chr1:98087716-98087735 | MsG0180005959.01.T01:intron | 25.0% |
| ! | ATAACACATTTCACAGTTTA+GGG | - | Chr1:98086512-98086531 | None:intergenic | 25.0% |
| ! | ATGATGTGTAAAAAACTACA+AGG | + | Chr1:98086995-98087014 | MsG0180005959.01.T01:intron | 25.0% |
| ! | CTTATGAAAACATCTTACTT+AGG | - | Chr1:98086425-98086444 | None:intergenic | 25.0% |
| ! | CTTTGCTTAAAAATCAATGA+TGG | - | Chr1:98087085-98087104 | None:intergenic | 25.0% |
| ! | TAAGCACTTATTAGACTATT+TGG | - | Chr1:98086453-98086472 | None:intergenic | 25.0% |
| ! | TATCACGATTGCTAAAATAA+AGG | - | Chr1:98086927-98086946 | None:intergenic | 25.0% |
| ! | TGTAATTTCTTTGACATCTA+AGG | + | Chr1:98087521-98087540 | MsG0180005959.01.T01:intron | 25.0% |
| ! | TTCAAATAAGTCGATCTAAA+GGG | - | Chr1:98086280-98086299 | None:intergenic | 25.0% |
| !! | ACTATCTATCATTTGTTGAA+TGG | + | Chr1:98087740-98087759 | MsG0180005959.01.T01:intron | 25.0% |
| !! | GATTATTTCCAATATCGATT+TGG | - | Chr1:98087694-98087713 | None:intergenic | 25.0% |
| !! | GCATTTGTTCTTTCTTTTAT+AGG | + | Chr1:98088041-98088060 | MsG0180005959.01.T01:intron | 25.0% |
| !! | TATGAAATGAAAAAAGTGTG+AGG | - | Chr1:98086027-98086046 | None:intergenic | 25.0% |
| !! | TTTCTTTGTTTGTGTTTCAT+TGG | + | Chr1:98086074-98086093 | MsG0180005959.01.T01:intron | 25.0% |
| !! | TTTTCCCATATAATTGATCT+TGG | - | Chr1:98087716-98087735 | None:intergenic | 25.0% |
| !!! | ACATTAATTTTGGTTATCAG+TGG | + | Chr1:98086550-98086569 | MsG0180005959.01.T01:intron | 25.0% |
| !!! | CATCATTGATTTTTAAGCAA+AGG | + | Chr1:98087083-98087102 | MsG0180005959.01.T01:intron | 25.0% |
| !!! | GAAGATTAGTTTAAAAAGGA+TGG | + | Chr1:98087032-98087051 | MsG0180005959.01.T01:intron | 25.0% |
| !!! | TTGGTTGGTAATTTAATTTG+TGG | + | Chr1:98087965-98087984 | MsG0180005959.01.T01:intron | 25.0% |
| AAGAAAAAGTCAACCATTGA+AGG | + | Chr1:98085863-98085882 | MsG0180005959.01.T01:CDS | 30.0% | |
| AAGACACTAAAGATCTATGA+AGG | + | Chr1:98088363-98088382 | MsG0180005959.01.T01:CDS | 30.0% | |
| ACAGAAGAAATTCTTTCATC+AGG | - | Chr1:98088417-98088436 | None:intergenic | 30.0% | |
| AGAGTTATCAAATTTGAGGA+TGG | + | Chr1:98086723-98086742 | MsG0180005959.01.T01:intron | 30.0% | |
| ATGCTTTCTCATAAAGAAAC+TGG | - | Chr1:98088332-98088351 | None:intergenic | 30.0% | |
| ATTTATATTCGGACAGTCAA+TGG | + | Chr1:98087324-98087343 | MsG0180005959.01.T01:CDS | 30.0% | |
| ATTTGAAGGAACCAAATGAT+TGG | + | Chr1:98087371-98087390 | MsG0180005959.01.T01:CDS | 30.0% | |
| CATAACACATTTCACAGTTT+AGG | - | Chr1:98086513-98086532 | None:intergenic | 30.0% | |
| CTAGAGAGTTATCAAATTTG+AGG | + | Chr1:98086719-98086738 | MsG0180005959.01.T01:intron | 30.0% | |
| GATATTGGATTATGGTGTAA+GGG | - | Chr1:98085800-98085819 | None:intergenic | 30.0% | |
| GATTTGCCGCAATTTATATT+CGG | + | Chr1:98087313-98087332 | MsG0180005959.01.T01:CDS | 30.0% | |
| GTTCAAATAAGTCGATCTAA+AGG | - | Chr1:98086281-98086300 | None:intergenic | 30.0% | |
| TAACACCTTCAAATTGTAGT+TGG | - | Chr1:98087855-98087874 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAAGAATAC+TGG | - | Chr1:98087586-98087605 | None:intergenic | 30.0% | |
| TCGACTAAATCATCAAAACT+TGG | - | Chr1:98086866-98086885 | None:intergenic | 30.0% | |
| TGATATTGGATTATGGTGTA+AGG | - | Chr1:98085801-98085820 | None:intergenic | 30.0% | |
| TGTCAAAGAAATTACAAGAG+TGG | - | Chr1:98087517-98087536 | None:intergenic | 30.0% | |
| TTGTTTGTGTTTCATTGGAA+TGG | + | Chr1:98086079-98086098 | MsG0180005959.01.T01:intron | 30.0% | |
| TTTATATTCGGACAGTCAAT+GGG | + | Chr1:98087325-98087344 | MsG0180005959.01.T01:CDS | 30.0% | |
| TTTGAAGGAACCAAATGATT+GGG | + | Chr1:98087372-98087391 | MsG0180005959.01.T01:CDS | 30.0% | |
| ! | ATAATTGTTCAGGTATTGCA+AGG | + | Chr1:98086759-98086778 | MsG0180005959.01.T01:intron | 30.0% |
| ! | CAAGTTTGAGATTCAATACT+TGG | + | Chr1:98087597-98087616 | MsG0180005959.01.T01:intron | 30.0% |
| !! | GATTAGTTTAAAAAGGATGG+AGG | + | Chr1:98087035-98087054 | MsG0180005959.01.T01:intron | 30.0% |
| !! | GTTGGTAATTTAATTTGTGG+TGG | + | Chr1:98087968-98087987 | MsG0180005959.01.T01:intron | 30.0% |
| !! | TATGGAAATAGTTTTGCCTT+TGG | - | Chr1:98087899-98087918 | None:intergenic | 30.0% |
| !! | TTGTTTTTCTGTCATGGATA+TGG | + | Chr1:98086651-98086670 | MsG0180005959.01.T01:CDS | 30.0% |
| !!! | AATGGTTTTGTGATCCAAAT+CGG | - | Chr1:98085769-98085788 | None:intergenic | 30.0% |
| AAAAACAAAGCCCCTTTGAT+TGG | - | Chr1:98086639-98086658 | None:intergenic | 35.0% | |
| AATGGACATACCTTACACAT+TGG | - | Chr1:98087418-98087437 | None:intergenic | 35.0% | |
| ACACTAAAGATCTATGAAGG+AGG | + | Chr1:98088366-98088385 | MsG0180005959.01.T01:CDS | 35.0% | |
| ACCATGAGATGATGTCATTA+TGG | - | Chr1:98088440-98088459 | None:intergenic | 35.0% | |
| ACTTGCACTTTCTTCTTTGA+AGG | + | Chr1:98086678-98086697 | MsG0180005959.01.T01:intron | 35.0% | |
| AGTGGTATGAAAGGAATTCA+AGG | + | Chr1:98086568-98086587 | MsG0180005959.01.T01:intron | 35.0% | |
| AGTTCAGATAGATCCTTGTA+TGG | - | Chr1:98087917-98087936 | None:intergenic | 35.0% | |
| AGTTGTATTAGCACATCTGT+TGG | + | Chr1:98087771-98087790 | MsG0180005959.01.T01:intron | 35.0% | |
| ATAGATTGCAACAACGATCA+CGG | - | Chr1:98086953-98086972 | None:intergenic | 35.0% | |
| ATCAAGGTTAAGAGAAGCTA+TGG | - | Chr1:98085909-98085928 | None:intergenic | 35.0% | |
| GACTGTCCGAATATAAATTG+CGG | - | Chr1:98087322-98087341 | None:intergenic | 35.0% | |
| GATCAAACACGATTAAGAAC+TGG | + | Chr1:98088090-98088109 | MsG0180005959.01.T01:CDS | 35.0% | |
| GATTATGGTGTAAGGGTAAA+GGG | - | Chr1:98085793-98085812 | None:intergenic | 35.0% | |
| GCTCCATTATTGATACTTCA+TGG | + | Chr1:98088273-98088292 | MsG0180005959.01.T01:CDS | 35.0% | |
| GGCAAAACTATTTCCATACA+AGG | + | Chr1:98087901-98087920 | MsG0180005959.01.T01:CDS | 35.0% | |
| GGTTTATCTGAAGGATTACA+TGG | + | Chr1:98086833-98086852 | MsG0180005959.01.T01:CDS | 35.0% | |
| GTCAATGTAAATGCATCGAA+AGG | - | Chr1:98087274-98087293 | None:intergenic | 35.0% | |
| GTGGTATGAAAGGAATTCAA+GGG | + | Chr1:98086569-98086588 | MsG0180005959.01.T01:intron | 35.0% | |
| TAACATGCCTTCTGATATCT+TGG | - | Chr1:98087829-98087848 | None:intergenic | 35.0% | |
| TCAACCAAGAACAACAAATC+AGG | - | Chr1:98087803-98087822 | None:intergenic | 35.0% | |
| TCAAGATATTGAGTCACAGT+TGG | + | Chr1:98088134-98088153 | MsG0180005959.01.T01:CDS | 35.0% | |
| TCATCTCATGGTTAGACATT+AGG | + | Chr1:98088448-98088467 | MsG0180005959.01.T01:CDS | 35.0% | |
| TCCATAATGACATCATCTCA+TGG | + | Chr1:98088436-98088455 | MsG0180005959.01.T01:CDS | 35.0% | |
| TGCTCTTAAAGCTCATTTGA+AGG | + | Chr1:98087357-98087376 | MsG0180005959.01.T01:CDS | 35.0% | |
| TGGTATGAAAGGAATTCAAG+GGG | + | Chr1:98086570-98086589 | MsG0180005959.01.T01:CDS | 35.0% | |
| TTGATTGCCAAGATATCAGA+AGG | + | Chr1:98087819-98087838 | MsG0180005959.01.T01:intron | 35.0% | |
| TTGGTTATCAGTGGTATGAA+AGG | + | Chr1:98086559-98086578 | MsG0180005959.01.T01:intron | 35.0% | |
| TTTGCTCACTTTCTGTTACT+TGG | + | Chr1:98088176-98088195 | MsG0180005959.01.T01:intron | 35.0% | |
| ! | ATTTGATAACTCTCTAGCTC+TGG | - | Chr1:98086716-98086735 | None:intergenic | 35.0% |
| ! | CTTGTCTAAAATGATGCCAA+AGG | + | Chr1:98087880-98087899 | MsG0180005959.01.T01:CDS | 35.0% |
| ! | GCTCCATGAAGTATCAATAA+TGG | - | Chr1:98088279-98088298 | None:intergenic | 35.0% |
| ! | GCTTTTGTCCAAATCGATAT+TGG | + | Chr1:98087683-98087702 | MsG0180005959.01.T01:intron | 35.0% |
| ! | TAAAGAAACTGGCTCACTAA+TGG | - | Chr1:98088321-98088340 | None:intergenic | 35.0% |
| ! | TGCAAAAGAATACTGGTTGA+GGG | - | Chr1:98087579-98087598 | None:intergenic | 35.0% |
| ! | TGGTAGAGTGCAAATTTTCA+AGG | - | Chr1:98088012-98088031 | None:intergenic | 35.0% |
| ! | TTGCAAAAGAATACTGGTTG+AGG | - | Chr1:98087580-98087599 | None:intergenic | 35.0% |
| !! | TGGATTTGGTGTTTATGCAA+TGG | + | Chr1:98086796-98086815 | MsG0180005959.01.T01:CDS | 35.0% |
| !!! | ATTTTAGCTGCTTCTGGATT+TGG | + | Chr1:98086782-98086801 | MsG0180005959.01.T01:CDS | 35.0% |
| AACACGATTAAGAACTGGCA+TGG | + | Chr1:98088095-98088114 | MsG0180005959.01.T01:CDS | 40.0% | |
| AACATGGCGTTCCAATCAAA+GGG | + | Chr1:98086625-98086644 | MsG0180005959.01.T01:CDS | 40.0% | |
| AAGGAACCAAATGATTGGGA+CGG | + | Chr1:98087376-98087395 | MsG0180005959.01.T01:CDS | 40.0% | |
| ACTTCATGGAGCAGAAGATA+AGG | + | Chr1:98088287-98088306 | MsG0180005959.01.T01:CDS | 40.0% | |
| ATCTATGAAGGAGGTTACCA+TGG | + | Chr1:98088375-98088394 | MsG0180005959.01.T01:CDS | 40.0% | |
| CAACATCAAATGCAACACAG+AGG | - | Chr1:98087441-98087460 | None:intergenic | 40.0% | |
| CACCTTCAAATTGTAGTTGG+CGG | - | Chr1:98087852-98087871 | None:intergenic | 40.0% | |
| CTGTGACTCAATATCTTGAG+TGG | - | Chr1:98088133-98088152 | None:intergenic | 40.0% | |
| CTTACACATTGGAGCTACAA+GGG | - | Chr1:98087407-98087426 | None:intergenic | 40.0% | |
| CTTCAGATAAACCGAAACCT+GGG | - | Chr1:98086826-98086845 | None:intergenic | 40.0% | |
| GGATTATGGTGTAAGGGTAA+AGG | - | Chr1:98085794-98085813 | None:intergenic | 40.0% | |
| GTCGCACAAATGTTTATGTC+AGG | - | Chr1:98086310-98086329 | None:intergenic | 40.0% | |
| TACCGCCAACTACAATTTGA+AGG | + | Chr1:98087847-98087866 | MsG0180005959.01.T01:CDS | 40.0% | |
| TATAATAGACTGCACCTGCT+GGG | + | Chr1:98086109-98086128 | MsG0180005959.01.T01:intron | 40.0% | |
| TATTGAGTCACAGTTGGAGA+AGG | + | Chr1:98088140-98088159 | MsG0180005959.01.T01:CDS | 40.0% | |
| TCAAATGCAACACAGAGGAA+TGG | - | Chr1:98087436-98087455 | None:intergenic | 40.0% | |
| TGAAAGGAATTCAAGGGGAT+TGG | + | Chr1:98086575-98086594 | MsG0180005959.01.T01:CDS | 40.0% | |
| ! | ACCAACCAATTTTCTCTTGC+CGG | - | Chr1:98087954-98087973 | None:intergenic | 40.0% |
| ! | CGATGATGATGAGTATAGCA+AGG | + | Chr1:98086186-98086205 | MsG0180005959.01.T01:intron | 40.0% |
| ! | GTATAGCAAGGCATTATGCT+TGG | + | Chr1:98086198-98086217 | MsG0180005959.01.T01:intron | 40.0% |
| ! | GTTTATGCAATGGATTTCCC+AGG | + | Chr1:98086806-98086825 | MsG0180005959.01.T01:CDS | 40.0% |
| ! | TGGAGATTTTCTGCAAAAGC+TGG | + | Chr1:98086595-98086614 | MsG0180005959.01.T01:CDS | 40.0% |
| ! | TTCACAGTTTAGGGCATGTT+TGG | - | Chr1:98086503-98086522 | None:intergenic | 40.0% |
| !! | GAACTTATTTTCCGAGAACC+CGG | + | Chr1:98087932-98087951 | MsG0180005959.01.T01:CDS | 40.0% |
| !! | GAAGCCTGATTTGTTGTTCT+TGG | + | Chr1:98087796-98087815 | MsG0180005959.01.T01:intron | 40.0% |
| AAAAGCTGGATGCCAGAACA+TGG | + | Chr1:98086609-98086628 | MsG0180005959.01.T01:CDS | 45.0% | |
| ACATGGCGTTCCAATCAAAG+GGG | + | Chr1:98086626-98086645 | MsG0180005959.01.T01:CDS | 45.0% | |
| AGAACCCGGCAAGAGAAAAT+TGG | + | Chr1:98087946-98087965 | MsG0180005959.01.T01:CDS | 45.0% | |
| ATATTCGGACAGTCAATGGG+TGG | + | Chr1:98087328-98087347 | MsG0180005959.01.T01:CDS | 45.0% | |
| ATGACAACGACACTCCGATT+TGG | + | Chr1:98085752-98085771 | MsG0180005959.01.T01:CDS | 45.0% | |
| CCAGGTTTCGGTTTATCTGA+AGG | + | Chr1:98086824-98086843 | MsG0180005959.01.T01:CDS | 45.0% | |
| CCTTACACATTGGAGCTACA+AGG | - | Chr1:98087408-98087427 | None:intergenic | 45.0% | |
| CCTTCAGATAAACCGAAACC+TGG | - | Chr1:98086827-98086846 | None:intergenic | 45.0% | |
| CCTTGTAGCTCCAATGTGTA+AGG | + | Chr1:98087405-98087424 | MsG0180005959.01.T01:intron | 45.0% | |
| CTATAATAGACTGCACCTGC+TGG | + | Chr1:98086108-98086127 | MsG0180005959.01.T01:intron | 45.0% | |
| CTCATCGCTGATACCTTCAA+TGG | - | Chr1:98085879-98085898 | None:intergenic | 45.0% | |
| GAACATGGCGTTCCAATCAA+AGG | + | Chr1:98086624-98086643 | MsG0180005959.01.T01:CDS | 45.0% | |
| GGTGTAAGGGTAAAGGGAAA+TGG | - | Chr1:98085787-98085806 | None:intergenic | 45.0% | |
| GTTCACCTTCCAAAATGCCA+TGG | - | Chr1:98088395-98088414 | None:intergenic | 45.0% | |
| TACATTGACAGCTAGACCAG+AGG | + | Chr1:98087285-98087304 | MsG0180005959.01.T01:intron | 45.0% | |
| TCTTGAGTTATGATCCCAGC+AGG | - | Chr1:98086126-98086145 | None:intergenic | 45.0% | |
| TGCATTCACTCTCAGTCTCA+GGG | - | Chr1:98085843-98085862 | None:intergenic | 45.0% | |
| TGTCGAACATGTCTACGAGA+AGG | - | Chr1:98085938-98085957 | None:intergenic | 45.0% | |
| TTGATTGGAACGCCATGTTC+TGG | - | Chr1:98086624-98086643 | None:intergenic | 45.0% | |
| TTGCATTCACTCTCAGTCTC+AGG | - | Chr1:98085844-98085863 | None:intergenic | 45.0% | |
| TTGCTGATGCACATGAGTGA+AGG | - | Chr1:98085963-98085982 | None:intergenic | 45.0% | |
| ! | AGGAGGTTACCATGGCATTT+TGG | + | Chr1:98088383-98088402 | MsG0180005959.01.T01:CDS | 45.0% |
| ! | ATTTTCTCTTGCCGGGTTCT+CGG | - | Chr1:98087946-98087965 | None:intergenic | 45.0% |
| ! | CCAACCAATTTTCTCTTGCC+GGG | - | Chr1:98087953-98087972 | None:intergenic | 45.0% |
| ! | GCAATGGATTTCCCAGGTTT+CGG | + | Chr1:98086812-98086831 | MsG0180005959.01.T01:CDS | 45.0% |
| ! | GGTTACCATGGCATTTTGGA+AGG | + | Chr1:98088387-98088406 | MsG0180005959.01.T01:CDS | 45.0% |
| ! | TACGAGAAGGTGCATGATCA+AGG | - | Chr1:98085925-98085944 | None:intergenic | 45.0% |
| !!! | GCAAGGATTTTAGCTGCTTC+TGG | + | Chr1:98086776-98086795 | MsG0180005959.01.T01:CDS | 45.0% |
| !!! | GGGGCTTTGTTTTTCTGTCA+TGG | + | Chr1:98086645-98086664 | MsG0180005959.01.T01:CDS | 45.0% |
| CCCGGCAAGAGAAAATTGGT+TGG | + | Chr1:98087950-98087969 | MsG0180005959.01.T01:intron | 50.0% | |
| GTGACTCCGTCCCAATCATT+TGG | - | Chr1:98087385-98087404 | None:intergenic | 50.0% | |
| GACAGCTAGACCAGAGGTGA+AGG | + | Chr1:98087291-98087310 | MsG0180005959.01.T01:intron | 55.0% | |
| TGCGGCAAATCCTTCACCTC+TGG | - | Chr1:98087304-98087323 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 98085740 | 98088482 | 98085740 | ID=MsG0180005959.01;Name=MsG0180005959.01 |
| Chr1 | mRNA | 98085740 | 98088482 | 98085740 | ID=MsG0180005959.01.T01;Parent=MsG0180005959.01;Name=MsG0180005959.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|7|0|364 |
| Chr1 | exon | 98085740 | 98086003 | 98085740 | ID=MsG0180005959.01.T01:exon:16396;Parent=MsG0180005959.01.T01 |
| Chr1 | exon | 98086570 | 98086675 | 98086570 | ID=MsG0180005959.01.T01:exon:16397;Parent=MsG0180005959.01.T01 |
| Chr1 | exon | 98086771 | 98086917 | 98086771 | ID=MsG0180005959.01.T01:exon:16398;Parent=MsG0180005959.01.T01 |
| Chr1 | exon | 98087296 | 98087421 | 98087296 | ID=MsG0180005959.01.T01:exon:16399;Parent=MsG0180005959.01.T01 |
| Chr1 | exon | 98087831 | 98087967 | 98087831 | ID=MsG0180005959.01.T01:exon:16400;Parent=MsG0180005959.01.T01 |
| Chr1 | exon | 98088063 | 98088161 | 98088063 | ID=MsG0180005959.01.T01:exon:16401;Parent=MsG0180005959.01.T01 |
| Chr1 | exon | 98088267 | 98088482 | 98088267 | ID=MsG0180005959.01.T01:exon:16402;Parent=MsG0180005959.01.T01 |
| Chr1 | CDS | 98085740 | 98086003 | 98085740 | ID=MsG0180005959.01.T01:cds;Parent=MsG0180005959.01.T01 |
| Chr1 | CDS | 98086570 | 98086675 | 98086570 | ID=MsG0180005959.01.T01:cds;Parent=MsG0180005959.01.T01 |
| Chr1 | CDS | 98086771 | 98086917 | 98086771 | ID=MsG0180005959.01.T01:cds;Parent=MsG0180005959.01.T01 |
| Chr1 | CDS | 98087296 | 98087421 | 98087296 | ID=MsG0180005959.01.T01:cds;Parent=MsG0180005959.01.T01 |
| Chr1 | CDS | 98087831 | 98087967 | 98087831 | ID=MsG0180005959.01.T01:cds;Parent=MsG0180005959.01.T01 |
| Chr1 | CDS | 98088063 | 98088161 | 98088063 | ID=MsG0180005959.01.T01:cds;Parent=MsG0180005959.01.T01 |
| Chr1 | CDS | 98088267 | 98088482 | 98088267 | ID=MsG0180005959.01.T01:cds;Parent=MsG0180005959.01.T01 |
| Gene Sequence |
| Protein sequence |
