AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023366.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023366.01.T01 MTR_8g091660 91.582 392 32 1 1 392 91 481 0.0 744
MsG0480023366.01.T01 MTR_7g072420 64.450 391 138 1 2 392 92 481 0.0 548
MsG0480023366.01.T01 MTR_3g465800 63.010 392 144 1 1 392 12 402 0.0 528
MsG0480023366.01.T01 MTR_3g465800 63.010 392 144 1 1 392 83 473 0.0 526
MsG0480023366.01.T01 MTR_7g451450 29.545 396 239 10 4 389 98 463 3.22e-41 151
MsG0480023366.01.T01 MTR_4g076100 26.601 406 267 12 3 382 91 491 2.44e-33 130
MsG0480023366.01.T01 MTR_4g076100 26.496 351 229 11 56 382 2 347 1.30e-27 112
MsG0480023366.01.T01 MTR_3g465840 57.692 78 33 0 6 83 76 153 9.20e-27 104
MsG0480023366.01.T01 MTR_7g031840 35.294 221 93 8 186 389 27 214 7.27e-24 99.0
MsG0480023366.01.T01 MTR_3g089960 33.486 218 88 8 201 392 19 205 8.36e-23 96.7
MsG0480023366.01.T01 MTR_3g118070 26.625 323 207 10 4 314 30 334 3.91e-16 79.7
MsG0480023366.01.T01 MTR_3g118070 26.625 323 207 10 4 314 87 391 4.08e-16 80.1
MsG0480023366.01.T01 MTR_4g045917 41.880 117 35 4 238 354 8 91 2.73e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023366.01.T01 AT4G39660 83.673 392 63 1 1 392 86 476 0.0 696
MsG0480023366.01.T01 AT4G39660 83.673 392 63 1 1 392 11 401 0.0 695
MsG0480023366.01.T01 AT3G08860 63.520 392 142 1 1 392 91 481 0.0 542
MsG0480023366.01.T01 AT2G38400 62.755 392 144 2 1 392 88 477 0.0 533
MsG0480023366.01.T01 AT3G08860 63.757 378 136 1 1 378 91 467 0.0 521
MsG0480023366.01.T01 AT2G38400 61.440 389 148 2 1 389 88 474 0.0 514
MsG0480023366.01.T01 AT1G80600 29.574 399 241 10 4 392 88 456 2.43e-45 162
MsG0480023366.01.T01 AT3G22200 25.735 408 271 11 2 382 79 481 1.58e-34 134
MsG0480023366.01.T01 AT3G22200 25.735 408 271 11 2 382 88 490 1.86e-34 134
MsG0480023366.01.T01 AT5G46180 27.163 416 241 16 4 392 70 450 1.60e-33 130
MsG0480023366.01.T01 AT3G48730 28.669 293 179 11 4 285 91 364 7.09e-15 76.3
MsG0480023366.01.T01 AT5G63570 26.962 293 184 11 4 285 30 303 9.57e-13 69.7
MsG0480023366.01.T01 AT5G63570 26.962 293 184 11 4 285 93 366 1.11e-12 69.7

Find 103 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATGATACTTGCAATTTC+TGG 0.147480 4:+84244261 None:intergenic
TTTAAGATTTCCAGGCATTT+TGG 0.181064 4:+84246109 None:intergenic
ATGTATTAAATTGAATCTTT+TGG 0.246444 4:+84244238 None:intergenic
CATATTGAGTTTGGGTCTTC+AGG 0.257300 4:-84244982 MsG0480023366.01.T01:CDS
GACGCACAGGAAGCCATTAT+TGG 0.266385 4:-84244725 MsG0480023366.01.T01:CDS
TTAGCCATTGTTACTATATC+AGG 0.280328 4:+84244678 None:intergenic
AAGATTCAATTTAATACATT+TGG 0.290043 4:-84244234 MsG0480023366.01.T01:CDS
GACATCTTTGGCATAACTAT+TGG 0.296475 4:+84245011 None:intergenic
GTCCAAGACCATATTGAGTT+TGG 0.299138 4:-84244991 MsG0480023366.01.T01:CDS
AGGCGTTACCTCAATGCTTT+TGG 0.302991 4:-84246269 MsG0480023366.01.T01:CDS
CATCAGCATTGCCAATTCAT+TGG 0.328091 4:+84245691 None:intergenic
ACATTGTCATCCCGAAGTTT+TGG 0.330786 4:-84246222 MsG0480023366.01.T01:CDS
ATTTATAGCTAAAACAATTC+AGG 0.336478 4:-84244947 MsG0480023366.01.T01:intron
GATGAAGTGCAAACTGGATT+TGG 0.338855 4:-84244747 MsG0480023366.01.T01:CDS
AATATGGTCTTGGACATCTT+TGG 0.338980 4:+84244999 None:intergenic
TGACTCACTTTAAGATTTCC+AGG 0.342658 4:+84246101 None:intergenic
AAGAAACAAACCTGTGGTAT+TGG 0.351059 4:+84245563 None:intergenic
ACTTGCAGTGCTCAAAGTTC+TGG 0.353103 4:-84244184 MsG0480023366.01.T01:CDS
ATTGGCAACGGTTTGCCATT+AGG 0.358680 4:-84244300 MsG0480023366.01.T01:CDS
GTTAATCTGTATTAGGGTAT+TGG 0.364556 4:-84244318 MsG0480023366.01.T01:intron
ACGCACAGGAAGCCATTATT+GGG 0.364879 4:-84244724 MsG0480023366.01.T01:CDS
GGGTCTTCAGGAAACGTTGC+TGG 0.371484 4:-84244970 MsG0480023366.01.T01:CDS
GATGCATACCGTGGAGTCTT+TGG 0.379093 4:-84245042 MsG0480023366.01.T01:CDS
GAAGAGCTTGGCATCCTTGT+TGG 0.381585 4:-84243610 MsG0480023366.01.T01:intron
CTGAAGACCCAAACTCAATA+TGG 0.386629 4:+84244983 None:intergenic
GTGTCTCGAAACCCCAATAA+TGG 0.392327 4:+84244712 None:intergenic
TCCAAGACCATATTGAGTTT+GGG 0.404650 4:-84244990 MsG0480023366.01.T01:CDS
CTGTGAAATGATTGTGCATC+TGG 0.407185 4:-84243378 MsG0480023366.01.T01:exon
AGAAACAAACCTGTGGTATT+GGG 0.417616 4:+84245564 None:intergenic
ATCGGTGATGTGAGGGGAAG+AGG 0.417839 4:-84243820 MsG0480023366.01.T01:CDS
AAGAGCTTGGCATCCTTGTT+GGG 0.421559 4:-84243609 MsG0480023366.01.T01:CDS
GGGAACCTTGTATGTTCTGC+CGG 0.423855 4:-84244210 MsG0480023366.01.T01:CDS
AAGATGGCATCCAAAACTTC+GGG 0.424896 4:+84246212 None:intergenic
AGGGGAAGAGGATTAATGTT+GGG 0.429449 4:-84243808 MsG0480023366.01.T01:CDS
TGGTTCTGAAGCCAATGAAT+TGG 0.432727 4:-84245702 MsG0480023366.01.T01:CDS
AAGACTCCACGGTATGCATC+TGG 0.440764 4:+84245045 None:intergenic
AGATTGTATACTGGTAATCT+TGG 0.455218 4:-84245665 MsG0480023366.01.T01:CDS
ATTCAATTTAATACATTTGG+TGG 0.459797 4:-84244231 MsG0480023366.01.T01:CDS
ATCTTGGTATGATTTCTTTG+AGG 0.472887 4:-84245649 MsG0480023366.01.T01:CDS
GGTACCTGCCTATTTAAAAC+AGG 0.477594 4:-84244811 MsG0480023366.01.T01:CDS
GGTTGGAGGAGCGGGTGAGC+TGG 0.485907 4:-84244832 MsG0480023366.01.T01:CDS
AGCTGATTTCGCCGAGGCGT+TGG 0.489968 4:-84246135 MsG0480023366.01.T01:CDS
GGGATTGTTGCAGTTTCTTG+TGG 0.495758 4:-84246245 MsG0480023366.01.T01:CDS
TATGACATTGTGCGCAAGGC+TGG 0.497701 4:-84244786 MsG0480023366.01.T01:CDS
GGAACCTTGTATGTTCTGCC+GGG 0.497823 4:-84244209 MsG0480023366.01.T01:CDS
GGCATCCTTGTTGGGAAAGG+AGG 0.502022 4:-84243601 MsG0480023366.01.T01:CDS
AAAGATGGCATCCAAAACTT+CGG 0.503489 4:+84246211 None:intergenic
CTTGGCATCCTTGTTGGGAA+AGG 0.504222 4:-84243604 MsG0480023366.01.T01:CDS
GCTTTGTCATAGAATAGTCT+AGG 0.505328 4:+84243400 None:intergenic
TCCAGAAATTGCAAGTATCA+TGG 0.509409 4:-84244262 MsG0480023366.01.T01:CDS
CTTTGAGGAATGCATACCAT+GGG 0.510116 4:-84245634 MsG0480023366.01.T01:CDS
GTTGTAACAACAGCTCCTAA+TGG 0.510560 4:+84244285 None:intergenic
GCGTTGGCATCCAAAATGCC+TGG 0.511644 4:-84246119 MsG0480023366.01.T01:CDS
CAGTATCTTTATGATGAGGC+TGG 0.511898 4:-84246293 MsG0480023366.01.T01:CDS
CAATTTACTCTGCTCAAAGA+TGG 0.516015 4:+84246196 None:intergenic
ATTGCAGATGAAGTGCAAAC+TGG 0.518456 4:-84244753 MsG0480023366.01.T01:CDS
GACACCTGCGAAGGCTGAAA+CGG 0.518919 4:-84243755 MsG0480023366.01.T01:CDS
GTATTTCCACGTGTTTAGCC+AGG 0.519601 4:+84245586 None:intergenic
CTGTATTAGGGTATTGGCAA+CGG 0.521909 4:-84244312 MsG0480023366.01.T01:intron
ACCCAAACTCAATATGGTCT+TGG 0.524773 4:+84244989 None:intergenic
CTGATGGCCAGATTGTATAC+TGG 0.525539 4:-84245674 MsG0480023366.01.T01:CDS
TTCAATTTAATACATTTGGT+GGG 0.529497 4:-84244230 MsG0480023366.01.T01:CDS
AAGATTACCAGTATACAATC+TGG 0.531788 4:+84245667 None:intergenic
AGTGCTCAAAGTTCTGGATA+AGG 0.534480 4:-84244178 MsG0480023366.01.T01:CDS
TCTGGATAAGGAGAAGCGTC+AGG 0.541297 4:-84244166 MsG0480023366.01.T01:CDS
CAGGCTCATTGCGCTGACGT+TGG 0.543753 4:-84244147 MsG0480023366.01.T01:CDS
CTAGCACAATGGGTCTCACC+TGG 0.551109 4:-84245604 MsG0480023366.01.T01:CDS
ACAGCCGTTTCAGCCTTCGC+AGG 0.558984 4:+84243751 None:intergenic
ATCTTTATGATGAGGCTGGA+AGG 0.559367 4:-84246289 MsG0480023366.01.T01:CDS
TTATTGGGGTTTCGAGACAC+AGG 0.560247 4:-84244709 MsG0480023366.01.T01:CDS
GGGTAGAGCTTGTTACCGAC+CGG 0.562027 4:-84243786 MsG0480023366.01.T01:CDS
GGGGAAGAGGATTAATGTTG+GGG 0.562085 4:-84243807 MsG0480023366.01.T01:CDS
GAGGGGAAGAGGATTAATGT+TGG 0.570220 4:-84243809 MsG0480023366.01.T01:CDS
TTTGAGCACTGCAAGTCCCC+CGG 0.571685 4:+84244191 None:intergenic
GTCAGTTATCGGTGATGTGA+GGG 0.580814 4:-84243827 MsG0480023366.01.T01:intron
TGATATAGTAACAATGGCTA+AGG 0.587737 4:-84244676 MsG0480023366.01.T01:intron
GTTGGGAAAGGAGGACTGCA+TGG 0.590559 4:-84243592 MsG0480023366.01.T01:CDS
GAACCTTGTATGTTCTGCCG+GGG 0.593544 4:-84244208 MsG0480023366.01.T01:CDS
CAATGAATTGGCAATGCTGA+TGG 0.596035 4:-84245690 MsG0480023366.01.T01:CDS
GCAGTCCTCCTTTCCCAACA+AGG 0.596405 4:+84243596 None:intergenic
TCTTTGAGGAATGCATACCA+TGG 0.596635 4:-84245635 MsG0480023366.01.T01:CDS
CAATCCCACCAAAAGCATTG+AGG 0.596949 4:+84246261 None:intergenic
CAAACTGGATTTGGACGCAC+AGG 0.598586 4:-84244738 MsG0480023366.01.T01:CDS
GGTCTATGACATTGTGCGCA+AGG 0.599332 4:-84244790 MsG0480023366.01.T01:CDS
CTTTGTCATAGAATAGTCTA+GGG 0.601418 4:+84243401 None:intergenic
TACTCCTGATATAGTAACAA+TGG 0.603041 4:-84244682 MsG0480023366.01.T01:CDS
CGGCGAAATCAGCTATAGCA+TGG 0.614659 4:+84246144 None:intergenic
CGCACAGGAAGCCATTATTG+GGG 0.616137 4:-84244723 MsG0480023366.01.T01:CDS
GACATTGTGCGCAAGGCTGG+TGG 0.621679 4:-84244783 MsG0480023366.01.T01:CDS
GTCTCACCTGGCTAAACACG+TGG 0.636269 4:-84245592 MsG0480023366.01.T01:CDS
AACCTTGTATGTTCTGCCGG+GGG 0.640046 4:-84244207 MsG0480023366.01.T01:CDS
TGTCAGTTATCGGTGATGTG+AGG 0.653316 4:-84243828 MsG0480023366.01.T01:intron
CATCTGCACCAAAGACTCCA+CGG 0.662027 4:+84245034 None:intergenic
GTGGAAATACCCAATACCAC+AGG 0.663146 4:-84245573 MsG0480023366.01.T01:intron
TATTGGGGTTTCGAGACACA+GGG 0.667558 4:-84244708 MsG0480023366.01.T01:CDS
TTTGAGGAATGCATACCATG+GGG 0.682476 4:-84245633 MsG0480023366.01.T01:CDS
AGCATGGTGTAGATATATTG+TGG 0.683017 4:+84246160 None:intergenic
CATGCAGTATCTTTATGATG+AGG 0.685842 4:-84246297 MsG0480023366.01.T01:CDS
ATGAATCCAGATGCATACCG+TGG 0.695117 4:-84245051 MsG0480023366.01.T01:CDS
TTGAGGAATGCATACCATGG+GGG 0.696196 4:-84245632 MsG0480023366.01.T01:CDS
TGCTATAGCTGATTTCGCCG+AGG 0.701735 4:-84246141 MsG0480023366.01.T01:CDS
TCAGTTATCGGTGATGTGAG+GGG 0.713448 4:-84243826 MsG0480023366.01.T01:intron
GGGAAGAGGATTAATGTTGG+GGG 0.726510 4:-84243806 MsG0480023366.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATATATTAGAAATAA+TGG + Chr4:84245991-84246010 None:intergenic 10.0%
!! TTAATATAATATCTTAGAAA+TGG - Chr4:84245597-84245616 MsG0480023366.01.T01:CDS 10.0%
!! TTAGATTTCAATATAAAATA+TGG + Chr4:84246186-84246205 None:intergenic 10.0%
!! AAATTATTCTTGACAATATT+TGG - Chr4:84244560-84244579 MsG0480023366.01.T01:intron 15.0%
!! AAGATTCAATTTAATACATT+TGG - Chr4:84245428-84245447 MsG0480023366.01.T01:intron 15.0%
!!! ACTATTTTTTTAGAGAAAAA+GGG - Chr4:84245213-84245232 MsG0480023366.01.T01:intron 15.0%
!!! ATGTATTAAATTGAATCTTT+TGG + Chr4:84245427-84245446 None:intergenic 15.0%
!!! TACTATTTTTTTAGAGAAAA+AGG - Chr4:84245212-84245231 MsG0480023366.01.T01:intron 15.0%
!!! TGTATTAAATTGAATCTTTT+GGG + Chr4:84245426-84245445 None:intergenic 15.0%
!! AATGCATAAAATAAGAAATC+AGG + Chr4:84243668-84243687 None:intergenic 20.0%
!! ACAGCTCAAATATATTTAAA+TGG + Chr4:84244478-84244497 None:intergenic 20.0%
!! ATGCATAAAATAAGAAATCA+GGG + Chr4:84243667-84243686 None:intergenic 20.0%
!! ATTCAATTTAATACATTTGG+TGG - Chr4:84245431-84245450 MsG0480023366.01.T01:intron 20.0%
!! ATTTATAGCTAAAACAATTC+AGG - Chr4:84244715-84244734 MsG0480023366.01.T01:CDS 20.0%
!! GATATTGAAAATATAGTAGA+TGG + Chr4:84245252-84245271 None:intergenic 20.0%
!! TCTATCATATTCAATGTTTA+AGG - Chr4:84244749-84244768 MsG0480023366.01.T01:CDS 20.0%
!! TTCAATTTAATACATTTGGT+GGG - Chr4:84245432-84245451 MsG0480023366.01.T01:intron 20.0%
!!! AATCAAAATTGGTTTTCATT+TGG - Chr4:84244356-84244375 MsG0480023366.01.T01:intron 20.0%
!!! AATTATGATGATGATTTGTA+TGG - Chr4:84243626-84243645 MsG0480023366.01.T01:intron 20.0%
!!! ATTCACTTTTCTATTATTGA+TGG - Chr4:84244530-84244549 MsG0480023366.01.T01:intron 20.0%
!!! GCTTTTAACATAATCAAAAT+TGG - Chr4:84244345-84244364 MsG0480023366.01.T01:intron 20.0%
!!! GTTTAAGGTAATAATTAGAT+TGG - Chr4:84244764-84244783 MsG0480023366.01.T01:CDS 20.0%
!!! TTAATTATTTTCTGAAACCA+TGG - Chr4:84245034-84245053 MsG0480023366.01.T01:CDS 20.0%
!!! TTCTTATTTTATGCATTCAT+TGG - Chr4:84243671-84243690 MsG0480023366.01.T01:intron 20.0%
!!! TTTGTAATACAGTTCTTTTA+TGG - Chr4:84245625-84245644 MsG0480023366.01.T01:CDS 20.0%
! ATCTCATGTTAATCTGTATT+AGG - Chr4:84245337-84245356 MsG0480023366.01.T01:intron 25.0%
! ATTACAAGTTACAGTATACA+TGG - Chr4:84244189-84244208 MsG0480023366.01.T01:CDS 25.0%
! GGTGAAAAAGTCAATTAAAA+AGG + Chr4:84244794-84244813 None:intergenic 25.0%
! TAAATATATTTGAGCTGTTC+TGG - Chr4:84244480-84244499 MsG0480023366.01.T01:intron 25.0%
! TCTCATGTTAATCTGTATTA+GGG - Chr4:84245338-84245357 MsG0480023366.01.T01:intron 25.0%
! TGTGTAACATAAGAAATAAG+AGG + Chr4:84243832-84243851 None:intergenic 25.0%
! TTATATAGTGTGTCAGTTAT+CGG - Chr4:84245824-84245843 MsG0480023366.01.T01:intron 25.0%
! TTCTTATGTTACACATTCAT+TGG - Chr4:84243837-84243856 MsG0480023366.01.T01:intron 25.0%
!! ATCTATGTACATGCTTTATT+AGG - Chr4:84245668-84245687 MsG0480023366.01.T01:CDS 25.0%
!! GGTTGTAATTTTGTAAATTC+TGG - Chr4:84243940-84243959 MsG0480023366.01.T01:intron 25.0%
!!! ACAATATTTGGAACCTTTTA+GGG - Chr4:84244572-84244591 MsG0480023366.01.T01:intron 25.0%
!!! TCATTTTTTGTGAAACACAT+AGG + Chr4:84246118-84246137 None:intergenic 25.0%
AAGAGGCTAAAATGAAACAA+TGG + Chr4:84245705-84245724 None:intergenic 30.0%
AAGATTACCAGTATACAATC+TGG + Chr4:84243998-84244017 None:intergenic 30.0%
AATATGAAGAAACAAACCTG+TGG + Chr4:84244108-84244127 None:intergenic 30.0%
ACTAAAAGAAATCAGCTAAG+AGG + Chr4:84245722-84245741 None:intergenic 30.0%
AGAAAAAATAGCATAGTTGG+CGG + Chr4:84244218-84244237 None:intergenic 30.0%
AGATTGTATACTGGTAATCT+TGG - Chr4:84243997-84244016 MsG0480023366.01.T01:intron 30.0%
ATCTTGGTATGATTTCTTTG+AGG - Chr4:84244013-84244032 MsG0480023366.01.T01:intron 30.0%
ATTGTCAACTTATGAATTGC+AGG - Chr4:84243919-84243938 MsG0480023366.01.T01:intron 30.0%
CAACATTGTCTCTAATAATG+AGG - Chr4:84245081-84245100 MsG0480023366.01.T01:intron 30.0%
CTTTGTCATAGAATAGTCTA+GGG + Chr4:84246264-84246283 None:intergenic 30.0%
GTATTGTTCGAAAAACTTAG+AGG - Chr4:84245932-84245951 MsG0480023366.01.T01:intron 30.0%
GTGAGAAAAAATAGCATAGT+TGG + Chr4:84244221-84244240 None:intergenic 30.0%
GTGAGTAAAACAGATTGATA+AGG + Chr4:84244283-84244302 None:intergenic 30.0%
GTTAATCTGTATTAGGGTAT+TGG - Chr4:84245344-84245363 MsG0480023366.01.T01:intron 30.0%
GTTCAATTTCATAATCTGCT+AGG - Chr4:84243705-84243724 MsG0480023366.01.T01:intron 30.0%
GTTGAGTTTCATAATGTGTT+AGG - Chr4:84243875-84243894 MsG0480023366.01.T01:intron 30.0%
TACTCCTGATATAGTAACAA+TGG - Chr4:84244980-84244999 MsG0480023366.01.T01:CDS 30.0%
TAGTTAGACTACTACTTGTT+TGG + Chr4:84246014-84246033 None:intergenic 30.0%
TCTAACTATTTACCTGCATA+TGG - Chr4:84246026-84246045 MsG0480023366.01.T01:intron 30.0%
TGATATAGTAACAATGGCTA+AGG - Chr4:84244986-84245005 MsG0480023366.01.T01:CDS 30.0%
TTAGCCATTGTTACTATATC+AGG + Chr4:84244987-84245006 None:intergenic 30.0%
TTTCACCATGACTTATTCTA+GGG - Chr4:84244807-84244826 MsG0480023366.01.T01:CDS 30.0%
! ATGTACATGCTTTATTAGGT+TGG - Chr4:84245672-84245691 MsG0480023366.01.T01:CDS 30.0%
! CTGTAACTTGTAATTCTAGA+TGG + Chr4:84244183-84244202 None:intergenic 30.0%
! GGATTTTTATGTCCAACATT+AGG - Chr4:84244377-84244396 MsG0480023366.01.T01:intron 30.0%
! TGTACATGCTTTATTAGGTT+GGG - Chr4:84245673-84245692 MsG0480023366.01.T01:CDS 30.0%
! TTTTCACCATGACTTATTCT+AGG - Chr4:84244806-84244825 MsG0480023366.01.T01:CDS 30.0%
!! GACAATATTTGGAACCTTTT+AGG - Chr4:84244571-84244590 MsG0480023366.01.T01:intron 30.0%
!! GTCATAGACCTGTTTTAAAT+AGG + Chr4:84244862-84244881 None:intergenic 30.0%
!! TACACAAAAGACTGTTTTTC+AGG - Chr4:84245768-84245787 MsG0480023366.01.T01:intron 30.0%
!! TATCTATGATTAGCTTGTGA+AGG + Chr4:84244404-84244423 None:intergenic 30.0%
!! TTTAAGATTTCCAGGCATTT+TGG + Chr4:84243556-84243575 None:intergenic 30.0%
!!! TTTTTTGTGAAACACATAGG+TGG + Chr4:84246115-84246134 None:intergenic 30.0%
AAAGATGGCATCCAAAACTT+CGG + Chr4:84243454-84243473 None:intergenic 35.0%
AAGAAACAAACCTGTGGTAT+TGG + Chr4:84244102-84244121 None:intergenic 35.0%
AGAAACAAACCTGTGGTATT+GGG + Chr4:84244101-84244120 None:intergenic 35.0%
AGCATGGTGTAGATATATTG+TGG + Chr4:84243505-84243524 None:intergenic 35.0%
ATGATGAATCTCACCCTAAA+AGG + Chr4:84244588-84244607 None:intergenic 35.0%
CAATTTACTCTGCTCAAAGA+TGG + Chr4:84243469-84243488 None:intergenic 35.0%
GACATCTTTGGCATAACTAT+TGG + Chr4:84244654-84244673 None:intergenic 35.0%
GCACTTCAAATGCATAACTA+AGG + Chr4:84245062-84245081 None:intergenic 35.0%
GCTTTGTCATAGAATAGTCT+AGG + Chr4:84246265-84246284 None:intergenic 35.0%
GTGTTAGGTTTGATTGAATG+TGG - Chr4:84243890-84243909 MsG0480023366.01.T01:intron 35.0%
TCCAAGACCATATTGAGTTT+GGG - Chr4:84244672-84244691 MsG0480023366.01.T01:intron 35.0%
TCCAGAAATTGCAAGTATCA+TGG - Chr4:84245400-84245419 MsG0480023366.01.T01:intron 35.0%
TGTTTCACAAAAAATGACGC+AGG - Chr4:84246121-84246140 MsG0480023366.01.T01:CDS 35.0%
TTCACCATGACTTATTCTAG+GGG - Chr4:84244808-84244827 MsG0480023366.01.T01:CDS 35.0%
! AATATGGTCTTGGACATCTT+TGG + Chr4:84244666-84244685 None:intergenic 35.0%
! GTACATGCTTTATTAGGTTG+GGG - Chr4:84245674-84245693 MsG0480023366.01.T01:CDS 35.0%
! TCACTTTGCAGATTTTCTTG+TGG - Chr4:84246235-84246254 MsG0480023366.01.T01:CDS 35.0%
!! TACATGCTTTATTAGGTTGG+GGG - Chr4:84245675-84245694 MsG0480023366.01.T01:CDS 35.0%
!! TAGACCTGTTTTAAATAGGC+AGG + Chr4:84244858-84244877 None:intergenic 35.0%
!! TGACTCACTTTAAGATTTCC+AGG + Chr4:84243564-84243583 None:intergenic 35.0%
AAGATGGCATCCAAAACTTC+GGG + Chr4:84243453-84243472 None:intergenic 40.0%
AAGCTCTTCAATCCATATGC+AGG + Chr4:84246041-84246060 None:intergenic 40.0%
ACCCAAACTCAATATGGTCT+TGG + Chr4:84244676-84244695 None:intergenic 40.0%
AGGGGAAGAGGATTAATGTT+GGG - Chr4:84245854-84245873 MsG0480023366.01.T01:intron 40.0%
ATCTTTATGATGAGGCTGGA+AGG - Chr4:84243373-84243392 MsG0480023366.01.T01:three_prime_UTR 40.0%
ATTGCAGATGAAGTGCAAAC+TGG - Chr4:84244909-84244928 MsG0480023366.01.T01:intron 40.0%
CAATGAATTGGCAATGCTGA+TGG - Chr4:84243972-84243991 MsG0480023366.01.T01:intron 40.0%
CAGCTCTGTTGTGTTATGTA+TGG - Chr4:84243775-84243794 MsG0480023366.01.T01:CDS 40.0%
CAGTATCTTTATGATGAGGC+TGG - Chr4:84243369-84243388 MsG0480023366.01.T01:three_prime_UTR 40.0%
CATATTGAGTTTGGGTCTTC+AGG - Chr4:84244680-84244699 MsG0480023366.01.T01:CDS 40.0%
CATCAGCATTGCCAATTCAT+TGG + Chr4:84243974-84243993 None:intergenic 40.0%
CTGAAGACCCAAACTCAATA+TGG + Chr4:84244682-84244701 None:intergenic 40.0%
CTGCTAGGTTTGATTGAATG+TGG - Chr4:84243720-84243739 MsG0480023366.01.T01:intron 40.0%
CTGTGAAATGATTGTGCATC+TGG - Chr4:84246284-84246303 MsG0480023366.01.T01:CDS 40.0%
GATGAAGTGCAAACTGGATT+TGG - Chr4:84244915-84244934 MsG0480023366.01.T01:intron 40.0%
GCCATGATACTTGCAATTTC+TGG + Chr4:84245404-84245423 None:intergenic 40.0%
GCTATTCAGTTAAGAGAGTG+AGG + Chr4:84246158-84246177 None:intergenic 40.0%
GTCCAAGACCATATTGAGTT+TGG - Chr4:84244671-84244690 MsG0480023366.01.T01:intron 40.0%
GTTCGAAAAACTTAGAGGTG+AGG - Chr4:84245937-84245956 MsG0480023366.01.T01:intron 40.0%
GTTGTAACAACAGCTCCTAA+TGG + Chr4:84245380-84245399 None:intergenic 40.0%
TCACCATGACTTATTCTAGG+GGG - Chr4:84244809-84244828 MsG0480023366.01.T01:CDS 40.0%
TTTGAGGAATGCATACCATG+GGG - Chr4:84244029-84244048 MsG0480023366.01.T01:intron 40.0%
! AATGCATAACTAAGGTGCCA+TGG + Chr4:84245054-84245073 None:intergenic 40.0%
! ACATTGTCATCCCGAAGTTT+TGG - Chr4:84243440-84243459 MsG0480023366.01.T01:intron 40.0%
! CTTTGAGGAATGCATACCAT+GGG - Chr4:84244028-84244047 MsG0480023366.01.T01:intron 40.0%
! GACTGCATGGAAATGTTTTC+AGG - Chr4:84246083-84246102 MsG0480023366.01.T01:intron 40.0%
! GGTACCTGCCTATTTAAAAC+AGG - Chr4:84244851-84244870 MsG0480023366.01.T01:intron 40.0%
! GTTACCTCAATGCTTTTGGT+GGG - Chr4:84243397-84243416 MsG0480023366.01.T01:CDS 40.0%
! TCTTTGAGGAATGCATACCA+TGG - Chr4:84244027-84244046 MsG0480023366.01.T01:intron 40.0%
! TGCATATGGATTGAAGAGCT+TGG - Chr4:84246040-84246059 MsG0480023366.01.T01:intron 40.0%
!! AGTGCTCAAAGTTCTGGATA+AGG - Chr4:84245484-84245503 MsG0480023366.01.T01:intron 40.0%
!! CTGTATTAGGGTATTGGCAA+CGG - Chr4:84245350-84245369 MsG0480023366.01.T01:intron 40.0%
!! TGGTTCTGAAGCCAATGAAT+TGG - Chr4:84243960-84243979 MsG0480023366.01.T01:intron 40.0%
!!! GCTATTTTTTCTCACTGTCG+TGG - Chr4:84244226-84244245 MsG0480023366.01.T01:CDS 40.0%
AAGAGCTTGGCATCCTTGTT+GGG - Chr4:84246053-84246072 MsG0480023366.01.T01:intron 45.0%
ACGCACAGGAAGCCATTATT+GGG - Chr4:84244938-84244957 MsG0480023366.01.T01:intron 45.0%
ACTTGCAGTGCTCAAAGTTC+TGG - Chr4:84245478-84245497 MsG0480023366.01.T01:intron 45.0%
ATGAATCCAGATGCATACCG+TGG - Chr4:84244611-84244630 MsG0480023366.01.T01:intron 45.0%
ATTGGCAACGGTTTGCCATT+AGG - Chr4:84245362-84245381 MsG0480023366.01.T01:intron 45.0%
CAACCCCCTAGAATAAGTCA+TGG + Chr4:84244815-84244834 None:intergenic 45.0%
CTGATGGCCAGATTGTATAC+TGG - Chr4:84243988-84244007 MsG0480023366.01.T01:intron 45.0%
GAAAAACAAGACACCTGCGA+AGG - Chr4:84245898-84245917 MsG0480023366.01.T01:intron 45.0%
GAGGGGAAGAGGATTAATGT+TGG - Chr4:84245853-84245872 MsG0480023366.01.T01:intron 45.0%
GCTTGTGAAGGTCCTAATGT+TGG + Chr4:84244392-84244411 None:intergenic 45.0%
GGGAAGAGGATTAATGTTGG+GGG - Chr4:84245856-84245875 MsG0480023366.01.T01:intron 45.0%
GGGATTGTTGCAGTTTCTTG+TGG - Chr4:84243417-84243436 MsG0480023366.01.T01:CDS 45.0%
GGGGAAGAGGATTAATGTTG+GGG - Chr4:84245855-84245874 MsG0480023366.01.T01:intron 45.0%
GTATTTCCACGTGTTTAGCC+AGG + Chr4:84244079-84244098 None:intergenic 45.0%
GTCAGTTATCGGTGATGTGA+GGG - Chr4:84245835-84245854 MsG0480023366.01.T01:intron 45.0%
GTGGAAATACCCAATACCAC+AGG - Chr4:84244089-84244108 MsG0480023366.01.T01:intron 45.0%
GTGTCTCGAAACCCCAATAA+TGG + Chr4:84244953-84244972 None:intergenic 45.0%
TATTGGGGTTTCGAGACACA+GGG - Chr4:84244954-84244973 MsG0480023366.01.T01:CDS 45.0%
TCAGTTATCGGTGATGTGAG+GGG - Chr4:84245836-84245855 MsG0480023366.01.T01:intron 45.0%
TGTCAGTTATCGGTGATGTG+AGG - Chr4:84245834-84245853 MsG0480023366.01.T01:intron 45.0%
TTATTGGGGTTTCGAGACAC+AGG - Chr4:84244953-84244972 MsG0480023366.01.T01:CDS 45.0%
TTGAGGAATGCATACCATGG+GGG - Chr4:84244030-84244049 MsG0480023366.01.T01:intron 45.0%
! AGGCGTTACCTCAATGCTTT+TGG - Chr4:84243393-84243412 MsG0480023366.01.T01:exon 45.0%
! CATGACTTATTCTAGGGGGT+TGG - Chr4:84244813-84244832 MsG0480023366.01.T01:CDS 45.0%
! CGTTACCTCAATGCTTTTGG+TGG - Chr4:84243396-84243415 MsG0480023366.01.T01:CDS 45.0%
!! CAATCCCACCAAAAGCATTG+AGG + Chr4:84243404-84243423 None:intergenic 45.0%
!!! AGGTGTCTTGTTTTTCCGGT+CGG + Chr4:84245894-84245913 None:intergenic 45.0%
!!! TCGCAGGTGTCTTGTTTTTC+CGG + Chr4:84245898-84245917 None:intergenic 45.0%
!! AAAATAATTAATAACTATAT+AGG + Chr4:84245025-84245044 None:intergenic 5.0%
AACCTTGTATGTTCTGCCGG+GGG - Chr4:84245455-84245474 MsG0480023366.01.T01:intron 50.0%
AAGACTCCACGGTATGCATC+TGG + Chr4:84244620-84244639 None:intergenic 50.0%
CAAACTGGATTTGGACGCAC+AGG - Chr4:84244924-84244943 MsG0480023366.01.T01:intron 50.0%
CATCTGCACCAAAGACTCCA+CGG + Chr4:84244631-84244650 None:intergenic 50.0%
CGCACAGGAAGCCATTATTG+GGG - Chr4:84244939-84244958 MsG0480023366.01.T01:intron 50.0%
CGGCGAAATCAGCTATAGCA+TGG + Chr4:84243521-84243540 None:intergenic 50.0%
CTTGGCATCCTTGTTGGGAA+AGG - Chr4:84246058-84246077 MsG0480023366.01.T01:intron 50.0%
GAACCTTGTATGTTCTGCCG+GGG - Chr4:84245454-84245473 MsG0480023366.01.T01:intron 50.0%
GAAGAGCTTGGCATCCTTGT+TGG - Chr4:84246052-84246071 MsG0480023366.01.T01:intron 50.0%
GACGCACAGGAAGCCATTAT+TGG - Chr4:84244937-84244956 MsG0480023366.01.T01:intron 50.0%
GATGCATACCGTGGAGTCTT+TGG - Chr4:84244620-84244639 MsG0480023366.01.T01:intron 50.0%
GGAACCTTGTATGTTCTGCC+GGG - Chr4:84245453-84245472 MsG0480023366.01.T01:intron 50.0%
GGGAACCTTGTATGTTCTGC+CGG - Chr4:84245452-84245471 MsG0480023366.01.T01:intron 50.0%
GGTCTATGACATTGTGCGCA+AGG - Chr4:84244872-84244891 MsG0480023366.01.T01:intron 50.0%
TATGACATTGTGCGCAAGGC+TGG - Chr4:84244876-84244895 MsG0480023366.01.T01:intron 50.0%
TTGTGCTAGAACTTCCCCCA+TGG + Chr4:84244047-84244066 None:intergenic 50.0%
! CATTTTGGATGCCAACGCCT+CGG + Chr4:84243541-84243560 None:intergenic 50.0%
! GACTTATTCTAGGGGGTTGG+AGG - Chr4:84244816-84244835 MsG0480023366.01.T01:CDS 50.0%
! GGGGGAAGTTCTAGCACAAT+GGG - Chr4:84244048-84244067 MsG0480023366.01.T01:intron 50.0%
! TGCTATAGCTGATTTCGCCG+AGG - Chr4:84243521-84243540 MsG0480023366.01.T01:intron 50.0%
! TGGGGGAAGTTCTAGCACAA+TGG - Chr4:84244047-84244066 MsG0480023366.01.T01:intron 50.0%
!! TCTGGATAAGGAGAAGCGTC+AGG - Chr4:84245496-84245515 MsG0480023366.01.T01:intron 50.0%
ATCGGTGATGTGAGGGGAAG+AGG - Chr4:84245842-84245861 MsG0480023366.01.T01:intron 55.0%
CTAGCACAATGGGTCTCACC+TGG - Chr4:84244058-84244077 MsG0480023366.01.T01:intron 55.0%
GACACCTGCGAAGGCTGAAA+CGG - Chr4:84245907-84245926 MsG0480023366.01.T01:intron 55.0%
GCAGTCCTCCTTTCCCAACA+AGG + Chr4:84246069-84246088 None:intergenic 55.0%
GGCATCCTTGTTGGGAAAGG+AGG - Chr4:84246061-84246080 MsG0480023366.01.T01:intron 55.0%
GGGTCTTCAGGAAACGTTGC+TGG - Chr4:84244692-84244711 MsG0480023366.01.T01:CDS 55.0%
GTCTCACCTGGCTAAACACG+TGG - Chr4:84244070-84244089 MsG0480023366.01.T01:intron 55.0%
GTTGGGAAAGGAGGACTGCA+TGG - Chr4:84246070-84246089 MsG0480023366.01.T01:intron 55.0%
! ATTCTAGGGGGTTGGAGGAG+CGG - Chr4:84244821-84244840 MsG0480023366.01.T01:CDS 55.0%
! GCGTTGGCATCCAAAATGCC+TGG - Chr4:84243543-84243562 MsG0480023366.01.T01:CDS 55.0%
! TTTGAGCACTGCAAGTCCCC+CGG + Chr4:84245474-84245493 None:intergenic 55.0%
!! GGGTAGAGCTTGTTACCGAC+CGG - Chr4:84245876-84245895 MsG0480023366.01.T01:intron 55.0%
ACAGCCGTTTCAGCCTTCGC+AGG + Chr4:84245914-84245933 None:intergenic 60.0%
GACATTGTGCGCAAGGCTGG+TGG - Chr4:84244879-84244898 MsG0480023366.01.T01:intron 60.0%
GTCCCCCGGCAGAACATACA+AGG + Chr4:84245460-84245479 None:intergenic 60.0%
! AGCTGATTTCGCCGAGGCGT+TGG - Chr4:84243527-84243546 MsG0480023366.01.T01:intron 60.0%
! CAGGCTCATTGCGCTGACGT+TGG - Chr4:84245515-84245534 MsG0480023366.01.T01:intron 60.0%
! TTCTAGGGGGTTGGAGGAGC+GGG - Chr4:84244822-84244841 MsG0480023366.01.T01:CDS 60.0%
GGTTGGAGGAGCGGGTGAGC+TGG - Chr4:84244830-84244849 MsG0480023366.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 84243366 84246318 84243366 ID=MsG0480023366.01;Name=MsG0480023366.01
Chr4 mRNA 84243366 84246318 84243366 ID=MsG0480023366.01.T01;Parent=MsG0480023366.01;Name=MsG0480023366.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.85|0.87|1|1|1|8|29|392
Chr4 exon 84243366 84243438 84243366 ID=MsG0480023366.01.T01:exon:1303;Parent=MsG0480023366.01.T01
Chr4 exon 84243542 84243628 84243542 ID=MsG0480023366.01.T01:exon:1302;Parent=MsG0480023366.01.T01
Chr4 exon 84243731 84243844 84243731 ID=MsG0480023366.01.T01:exon:1301;Parent=MsG0480023366.01.T01
Chr4 exon 84244100 84244325 84244100 ID=MsG0480023366.01.T01:exon:1300;Parent=MsG0480023366.01.T01
Chr4 exon 84244677 84244856 84244677 ID=MsG0480023366.01.T01:exon:1299;Parent=MsG0480023366.01.T01
Chr4 exon 84244948 84245091 84244948 ID=MsG0480023366.01.T01:exon:1298;Parent=MsG0480023366.01.T01
Chr4 exon 84245574 84245743 84245574 ID=MsG0480023366.01.T01:exon:1297;Parent=MsG0480023366.01.T01
Chr4 exon 84246105 84246318 84246105 ID=MsG0480023366.01.T01:exon:1296;Parent=MsG0480023366.01.T01
Chr4 CDS 84246105 84246318 84246105 ID=MsG0480023366.01.T01:cds;Parent=MsG0480023366.01.T01
Chr4 CDS 84245574 84245743 84245574 ID=MsG0480023366.01.T01:cds;Parent=MsG0480023366.01.T01
Chr4 CDS 84244948 84245091 84244948 ID=MsG0480023366.01.T01:cds;Parent=MsG0480023366.01.T01
Chr4 CDS 84244677 84244856 84244677 ID=MsG0480023366.01.T01:cds;Parent=MsG0480023366.01.T01
Chr4 CDS 84244100 84244325 84244100 ID=MsG0480023366.01.T01:cds;Parent=MsG0480023366.01.T01
Chr4 CDS 84243731 84243844 84243731 ID=MsG0480023366.01.T01:cds;Parent=MsG0480023366.01.T01
Chr4 CDS 84243542 84243628 84243542 ID=MsG0480023366.01.T01:cds;Parent=MsG0480023366.01.T01
Chr4 CDS 84243395 84243438 84243395 ID=MsG0480023366.01.T01:cds;Parent=MsG0480023366.01.T01
Chr4 three_prime_UTR 84243366 84243394 84243366 ID=MsG0480023366.01.T01:three_prime_utr;Parent=MsG0480023366.01.T01
Gene Sequence

>MsG0480023366.01.T01

ATGCAGTATCTTTATGATGAGGCTGGAAGGCGTTACCTCAATGCTTTTGGTGGGATTGTTGCAGTTTCTTGTGGACATTGTCATCCCGAAGTTTTGGATGCCATCTTTGAGCAGAGTAAATTGTTGCAGCATGCAACCACAATATATCTACACCATGCTATAGCTGATTTCGCCGAGGCGTTGGCATCCAAAATGCCTGGAAATCTTAAAGTGAGTTGTAATTTTGTAAATTCTGGTTCTGAAGCCAATGAATTGGCAATGCTGATGGCCAGATTGTATACTGGTAATCTTGGTATGATTTCTTTGAGGAATGCATACCATGGGGGAAGTTCTAGCACAATGGGTCTCACCTGGCTAAACACGTGGAAATACCCAATACCACAGGGTGAGATTCATCATGTAATGAATCCAGATGCATACCGTGGAGTCTTTGGTGCAGATGCCAATAGTTATGCCAAAGATGTCCAAGACCATATTGAGTTTGGGTCTTCAGGAAACGTTGCTGGATTTATAGCTAAAACAATTCAGGGGGTTGGAGGAGCGGGTGAGCTGGTACCTGCCTATTTAAAACAGGTCTATGACATTGTGCGCAAGGCTGGTGGTGTCTGCATTGCAGATGAAGTGCAAACTGGATTTGGACGCACAGGAAGCCATTATTGGGGTTTCGAGACACAGGGTGTTACTCCTGATATAGTAACAATGGCTAAGGGTATTGGCAACGGTTTGCCATTAGGAGCTGTTGTTACAACTCCAGAAATTGCAAGTATCATGGCCCAAAAGATTCAATTTAATACATTTGGTGGGAACCTTGTATGTTCTGCCGGGGGACTTGCAGTGCTCAAAGTTCTGGATAAGGAGAAGCGTCAGGCTCATTGCGCTGACGTTGGTTCTCATTTGCTTGAGCGTTTGAGATCACTTCAGAAACGACACGACATTATCGGTGATGTGAGGGGAAGAGGATTAATGTTGGGGGTAGAGCTTGTTACCGACCGGAAAAACAAGACACCTGCGAAGGCTGAAACGGCTGTATTGTTCGAAAAACTTAGAGAGCTTGGCATCCTTGTTGGGAAAGGAGGACTGCATGGAAATGTTTTCAGGATTAAGCCACCTATGTGTTTCACAAAAAATGACGCAGATTTTCTTGTGGATGCCCTAGACTATTCTATGACAAAGCTGTGA
Protein sequence

>MsG0480023366.01.T01

MQYLYDEAGRRYLNAFGGIVAVSCGHCHPEVLDAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVSCNFVNSGSEANELAMLMARLYTGNLGMISLRNAYHGGSSSTMGLTWLNTWKYPIPQGEIHHVMNPDAYRGVFGADANSYAKDVQDHIEFGSSGNVAGFIAKTIQGVGGAGELVPAYLKQVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVTPDIVTMAKGIGNGLPLGAVVTTPEIASIMAQKIQFNTFGGNLVCSAGGLAVLKVLDKEKRQAHCADVGSHLLERLRSLQKRHDIIGDVRGRGLMLGVELVTDRKNKTPAKAETAVLFEKLRELGILVGKGGLHGNVFRIKPPMCFTKNDADFLVDALDYSMTKL*