AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023540.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023540.01.T01 MTR_7g082240 96.667 180 6 0 39 218 72 251 1.75e-126 357
MsG0480023540.01.T01 MTR_8g095500 95.556 180 8 0 39 218 64 243 1.16e-124 352
MsG0480023540.01.T01 MTR_8g085910 56.111 180 79 0 39 218 33 212 7.51e-71 215
MsG0480023540.01.T01 MTR_8g103890 50.568 176 87 0 39 214 80 255 9.21e-64 199
MsG0480023540.01.T01 MTR_8g103890 57.265 117 50 0 39 155 80 196 8.22e-46 151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023540.01.T01 AT5G16140 72.778 180 49 0 39 218 61 240 3.63e-97 283
MsG0480023540.01.T01 AT5G16140 72.778 180 49 0 39 218 61 240 3.63e-97 283
MsG0480023540.01.T01 AT5G38290 68.889 180 56 0 39 218 71 250 1.01e-92 272
MsG0480023540.01.T01 AT5G38290 68.889 180 56 0 39 218 67 246 1.35e-92 271
MsG0480023540.01.T01 AT5G19830 54.749 179 81 0 39 217 34 212 1.92e-68 209
MsG0480023540.01.T01 AT1G18440 52.907 172 81 0 37 208 108 279 2.34e-65 204
MsG0480023540.01.T01 AT1G18440 57.447 94 40 0 37 130 108 201 4.08e-30 111

Find 91 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTACTGGAAAATATT+TGG 0.090803 4:-86629910 MsG0480023540.01.T01:three_prime_UTR
TTGATTACAGTGAGCGAATT+TGG 0.226060 4:+86636822 None:intergenic
TAATATAATCTTTATTGTTC+TGG 0.231981 4:-86629854 MsG0480023540.01.T01:three_prime_UTR
CTAACTGTCAATTTGGTTAC+TGG 0.236283 4:-86629921 MsG0480023540.01.T01:three_prime_UTR
GTTTACACTAACTGTCAATT+TGG 0.250203 4:-86629928 MsG0480023540.01.T01:three_prime_UTR
TGGAAATCCTCCTGGAACTA+TGG 0.260596 4:-86631068 MsG0480023540.01.T01:CDS
GAGGCAAATGAGAGTGAAAA+AGG 0.283687 4:+86636891 None:intergenic
CATGTCAATAGATTCAATTT+AGG 0.292948 4:-86630500 MsG0480023540.01.T01:CDS
TGAAGCATCAGCAAGTAAAA+TGG 0.298242 4:-86637044 MsG0480023540.01.T01:five_prime_UTR
TGATGCCCATGTCCACCTTT+AGG 0.302975 4:+86631878 None:intergenic
ATGTCAATAGATTCAATTTA+GGG 0.304320 4:-86630499 MsG0480023540.01.T01:CDS
ATTGCATGAATCAACATATT+AGG 0.328594 4:+86630354 None:intergenic
ACGTTGTAAAATGTAAAATT+CGG 0.329858 4:+86629825 None:intergenic
TGAAGCTTTAAAACACTGTT+TGG 0.348268 4:+86631902 None:intergenic
TTGATATGCACAGGTTCTAT+AGG 0.353031 4:-86632321 MsG0480023540.01.T01:intron
TTGGTTACTGGAAAATATTT+GGG 0.370139 4:-86629909 MsG0480023540.01.T01:three_prime_UTR
TGATTACAGTGAGCGAATTT+GGG 0.371238 4:+86636823 None:intergenic
TTTCGATGTGCTTGAATGAT+TGG 0.372617 4:+86636716 None:intergenic
GTTGAAGAAAATGAACAAAA+TGG 0.374829 4:-86636587 MsG0480023540.01.T01:CDS
TGAGGTTTCGCCAACAAAAC+TGG 0.384292 4:+86632291 None:intergenic
CTAAAATTCATGTATGTTTG+AGG 0.385508 4:+86632273 None:intergenic
AAATACTTACCACTAGAATA+TGG 0.387529 4:+86632027 None:intergenic
CAGATAATTGCTTCATGATA+AGG 0.391170 4:-86630305 MsG0480023540.01.T01:intron
GCTCTTAAATCCATAGTTCC+AGG 0.394847 4:+86631058 None:intergenic
TTAGGACCTTAGTGCTCAAT+GGG 0.396393 4:-86630532 MsG0480023540.01.T01:CDS
ATGGCAGATTGATGAGTCAT+TGG 0.397924 4:-86630573 MsG0480023540.01.T01:intron
AGATTATATTACAATTCATA+TGG 0.398864 4:+86629866 None:intergenic
CGTTGTAAAATGTAAAATTC+GGG 0.401008 4:+86629826 None:intergenic
TTGATTGATGAGAGAGAGGG+AGG 0.417675 4:+86636936 None:intergenic
ATACAGTCAAAGGCCTTGAT+TGG 0.426304 4:-86632445 MsG0480023540.01.T01:CDS
TGTAGTTCTGTGATTCAGAT+AGG 0.435170 4:+86636867 None:intergenic
GTTAGGACCTTAGTGCTCAA+TGG 0.438294 4:-86630533 MsG0480023540.01.T01:CDS
AATTTGGGAGAGAGGGAGAA+GGG 0.449963 4:+86636838 None:intergenic
CGGTGAATCCATTGTAAAGT+TGG 0.450246 4:+86636755 None:intergenic
AAACAGATGGTACAGATAGT+TGG 0.450774 4:+86637069 None:intergenic
GAATTTGGGAGAGAGGGAGA+AGG 0.453041 4:+86636837 None:intergenic
AATTGAATCTATTGACATGA+TGG 0.460838 4:+86630504 None:intergenic
AGCAGGGAGTTCAAGCTGTT+AGG 0.466973 4:-86630550 MsG0480023540.01.T01:CDS
GTGGACATGGGCATCACAAC+GGG 0.468098 4:-86631871 MsG0480023540.01.T01:intron
TCAAAGGCCTTGATTGGAAT+AGG 0.471258 4:-86632439 MsG0480023540.01.T01:intron
GGTGAATCCATTGTAAAGTT+GGG 0.477683 4:+86636756 None:intergenic
GTAGGAATTGGAAATCCTCC+TGG 0.480211 4:-86631076 MsG0480023540.01.T01:intron
GATTGATGAGTCATTGGAGC+AGG 0.481464 4:-86630567 MsG0480023540.01.T01:CDS
AGAGAGGGAGGGAGAGCGAA+GGG 0.483341 4:+86636948 None:intergenic
GAGAGAGGGAGGGAGAGCGA+AGG 0.484185 4:+86636947 None:intergenic
TAAAGTTGGGATTTGACGTA+TGG 0.493518 4:+86636769 None:intergenic
AAACGACTCAGTTGTGTTGG+TGG 0.494220 4:+86636556 None:intergenic
TGGAAAATATTTGGGATACC+AGG 0.501155 4:-86629901 MsG0480023540.01.T01:three_prime_UTR
CTTCAACCTAAAGGTGGACA+TGG 0.505877 4:-86631884 MsG0480023540.01.T01:CDS
TCTTCTACAGAAATTCAGTT+CGG 0.517267 4:-86631032 MsG0480023540.01.T01:CDS
GCTTTAAAACACTGTTTGGA+AGG 0.520293 4:+86631906 None:intergenic
TCTACAGAAATTCAGTTCGG+TGG 0.526550 4:-86631029 MsG0480023540.01.T01:CDS
TGATGCACCTATTCCAATCA+AGG 0.526609 4:+86632432 None:intergenic
TGATTGATGAGAGAGAGGGA+GGG 0.543428 4:+86636937 None:intergenic
ATGAATCAACATATTAGGCC+AGG 0.544360 4:+86630359 None:intergenic
GATGAATACAATACAGTCAA+AGG 0.544414 4:-86632455 MsG0480023540.01.T01:CDS
TGGTTAATAGATGAAATCCA+TGG 0.556117 4:-86630423 MsG0480023540.01.T01:three_prime_UTR
GATAGTCTTTCTCAATCAGA+AGG 0.556175 4:-86632484 MsG0480023540.01.T01:CDS
AGTGAGCGAATTTGGGAGAG+AGG 0.557305 4:+86636830 None:intergenic
GTTAAACCCATTGAGCACTA+AGG 0.559542 4:+86630526 None:intergenic
CAGTTCGGTGGAAAGAAAGC+AGG 0.561620 4:-86631017 MsG0480023540.01.T01:intron
GAAACAATTGACACTGAATG+AGG 0.562861 4:-86629954 MsG0480023540.01.T01:three_prime_UTR
GTGAGCGAATTTGGGAGAGA+GGG 0.563690 4:+86636831 None:intergenic
TTCAAACGACTCAGTTGTGT+TGG 0.566776 4:+86636553 None:intergenic
GTCAAATCCCAACTTTACAA+TGG 0.568764 4:-86636763 MsG0480023540.01.T01:exon
CATACACAATGTGGTGACCA+TGG 0.570874 4:+86630406 None:intergenic
TTAAAGCTTCAACCTAAAGG+TGG 0.579023 4:-86631890 MsG0480023540.01.T01:CDS
AATCACGGGAACCATCCAAA+TGG 0.582275 4:+86631199 None:intergenic
AATGTGATAGGCCATTTGGA+TGG 0.585569 4:-86631210 MsG0480023540.01.T01:CDS
AGTTGGGATTTGACGTATGG+CGG 0.590339 4:+86636772 None:intergenic
AATGTTCACTCTCCCTCACA+TGG 0.592558 4:-86630334 MsG0480023540.01.T01:three_prime_UTR
TACCACTAGAATATGGTGCA+AGG 0.592832 4:+86632034 None:intergenic
TTGCAAGTCGAGGAAAATCA+CGG 0.595139 4:+86631184 None:intergenic
TGCAAGTCGAGGAAAATCAC+GGG 0.606636 4:+86631185 None:intergenic
AATCATTCAAGCACATCGAA+AGG 0.607450 4:-86636714 MsG0480023540.01.T01:intron
GGCGGCGATTTCAGATTCGA+CGG 0.615832 4:+86636790 None:intergenic
ACTCGATAATATGCAGCAAG+TGG 0.616416 4:+86632059 None:intergenic
ACCACTAGAATATGGTGCAA+GGG 0.620229 4:+86632035 None:intergenic
GTTGGTTACGGCATTGTGTG+TGG 0.621759 4:-86629984 MsG0480023540.01.T01:three_prime_UTR
AACTGACCGATTGCAAGTCG+AGG 0.623200 4:+86631174 None:intergenic
GGTGGACATGGGCATCACAA+CGG 0.643921 4:-86631872 MsG0480023540.01.T01:CDS
GCCCTTGCACCATATTCTAG+TGG 0.644229 4:-86632036 MsG0480023540.01.T01:intron
TTCTGTGATTCAGATAGGAG+AGG 0.647706 4:+86636872 None:intergenic
TTCAACCTAAAGGTGGACAT+GGG 0.647848 4:-86631883 MsG0480023540.01.T01:CDS
TTATCTGCTAGAGCCATGTG+AGG 0.656922 4:+86630321 None:intergenic
ATTGATGAGTCATTGGAGCA+GGG 0.658395 4:-86630566 MsG0480023540.01.T01:CDS
TTGGACGACAATAGCTTCAG+CGG 0.669684 4:+86636735 None:intergenic
TATCTGCTAGAGCCATGTGA+GGG 0.682017 4:+86630322 None:intergenic
ATGCTAGCACATACACAATG+TGG 0.690802 4:+86630397 None:intergenic
GGCGATTTCAGATTCGACGG+TGG 0.697484 4:+86636793 None:intergenic
CTTAAATCCATAGTTCCAGG+AGG 0.704721 4:+86631061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGATTTAAAAAATGAA+TGG + Chr4:86630984-86631003 None:intergenic 10.0%
!! CAAATAAAATTAAAAATCAA+TGG + Chr4:86634526-86634545 None:intergenic 10.0%
!! GAATAAACAAAAAAAAATAT+TGG - Chr4:86633583-86633602 MsG0480023540.01.T01:intron 10.0%
!! GTTTCTATAAATTTATATAT+AGG - Chr4:86632614-86632633 MsG0480023540.01.T01:intron 10.0%
!! TTTAAAAAACAAGATTAAAT+AGG - Chr4:86633619-86633638 MsG0480023540.01.T01:intron 10.0%
!!! ATTTTTTAAATCTTTTTTTC+AGG - Chr4:86630987-86631006 MsG0480023540.01.T01:intron 10.0%
!!! TATTTGAAATGATTAATATA+AGG + Chr4:86632232-86632251 None:intergenic 10.0%
!!! TTTTACTAAAATTCATAATT+GGG - Chr4:86636135-86636154 MsG0480023540.01.T01:intron 10.0%
!!! TTTTTTTGTTTATATAAGAA+GGG - Chr4:86633691-86633710 MsG0480023540.01.T01:intron 10.0%
!!! TTTTTTTTGTTTATATAAGA+AGG - Chr4:86633690-86633709 MsG0480023540.01.T01:intron 10.0%
!! AAAACTAAAACATAAGAATT+TGG - Chr4:86633433-86633452 MsG0480023540.01.T01:intron 15.0%
!! AATTAAATGTATAAATACAG+AGG - Chr4:86636848-86636867 MsG0480023540.01.T01:five_prime_UTR 15.0%
!! AGATTATATTACAATTCATA+TGG + Chr4:86637062-86637081 None:intergenic 15.0%
!! ATTTCAAAAAAAGAAAAATG+TGG + Chr4:86631310-86631329 None:intergenic 15.0%
!! CATATGATTTAAAGAATATA+GGG + Chr4:86630725-86630744 None:intergenic 15.0%
!! GATTGTGATAAAATAAATTA+GGG + Chr4:86630252-86630271 None:intergenic 15.0%
!! TAAAATTAAAAATCAATGGT+AGG + Chr4:86634522-86634541 None:intergenic 15.0%
!! TAATATAATCTTTATTGTTC+TGG - Chr4:86637071-86637090 MsG0480023540.01.T01:five_prime_UTR 15.0%
!! TGATTGTGATAAAATAAATT+AGG + Chr4:86630253-86630272 None:intergenic 15.0%
!! TTTACTAAAATTCATAATTG+GGG - Chr4:86636136-86636155 MsG0480023540.01.T01:intron 15.0%
!! TTTAGATTAAAACTATCTAA+TGG - Chr4:86632145-86632164 MsG0480023540.01.T01:intron 15.0%
!!! AATTTTATATTCTACAAACA+CGG - Chr4:86633259-86633278 MsG0480023540.01.T01:intron 15.0%
!!! AGATAGTTTTAATCTAAAAA+AGG + Chr4:86632143-86632162 None:intergenic 15.0%
!!! ATAGAATTTTACAAAAGTTT+AGG + Chr4:86632289-86632308 None:intergenic 15.0%
!!! ATTTAGGTTTATTTTAATTG+TGG - Chr4:86636074-86636093 MsG0480023540.01.T01:intron 15.0%
!!! GAATTCTTTCAATTTTTATT+AGG + Chr4:86631404-86631423 None:intergenic 15.0%
!!! GTTTGTAGAATATAAAATTT+TGG + Chr4:86633258-86633277 None:intergenic 15.0%
!!! GTTTTACTAAAATTCATAAT+TGG - Chr4:86636134-86636153 MsG0480023540.01.T01:intron 15.0%
!!! TATGTTTTAGTTTTCTTAAT+AGG + Chr4:86633427-86633446 None:intergenic 15.0%
!!! TCTTTTTTTGAAATGTATTT+GGG - Chr4:86631316-86631335 MsG0480023540.01.T01:intron 15.0%
!!! TTCTTTTTTTGAAATGTATT+TGG - Chr4:86631315-86631334 MsG0480023540.01.T01:intron 15.0%
!!! TTTTTTTTTGCTTATGTTAT+GGG + Chr4:86633392-86633411 None:intergenic 15.0%
!!! TTTTTTTTTTGCTTATGTTA+TGG + Chr4:86633393-86633412 None:intergenic 15.0%
!! AAAATTATGAAGTCTATAAC+TGG - Chr4:86635668-86635687 MsG0480023540.01.T01:intron 20.0%
!! AATATCATTTCTCATAGTTA+TGG + Chr4:86633789-86633808 None:intergenic 20.0%
!! AATCTAGCTATTATATATGA+CGG + Chr4:86634697-86634716 None:intergenic 20.0%
!! AATGATTAAACAAACAGTTA+AGG + Chr4:86632920-86632939 None:intergenic 20.0%
!! AATTATTTGAATGTTGTCAT+GGG - Chr4:86635416-86635435 MsG0480023540.01.T01:intron 20.0%
!! ACAATATGTGAAAAAAATGT+AGG + Chr4:86631221-86631240 None:intergenic 20.0%
!! ACGTTGTAAAATGTAAAATT+CGG + Chr4:86637103-86637122 None:intergenic 20.0%
!! ATATCATTTCTCATAGTTAT+GGG + Chr4:86633788-86633807 None:intergenic 20.0%
!! ATGTCAATAGATTCAATTTA+GGG - Chr4:86636426-86636445 MsG0480023540.01.T01:intron 20.0%
!! ATGTGTAATAATACACTTAT+AGG - Chr4:86631171-86631190 MsG0480023540.01.T01:intron 20.0%
!! CAATATGTGAAAAAAATGTA+GGG + Chr4:86631220-86631239 None:intergenic 20.0%
!! CACATTCATTATTCTAATAT+GGG - Chr4:86632571-86632590 MsG0480023540.01.T01:intron 20.0%
!! CCATATGATTTAAAGAATAT+AGG + Chr4:86630726-86630745 None:intergenic 20.0%
!! CCTATATTCTTTAAATCATA+TGG - Chr4:86630723-86630742 MsG0480023540.01.T01:intron 20.0%
!! GAAGTTATAGATAGTTATTA+AGG - Chr4:86631501-86631520 MsG0480023540.01.T01:intron 20.0%
!! GCTTTAATAATTGGTTATAT+TGG - Chr4:86631612-86631631 MsG0480023540.01.T01:intron 20.0%
!! TCATTGATATAATCTTTCTA+AGG + Chr4:86630665-86630684 None:intergenic 20.0%
!! TTAAAATAAGTGTACAAAAG+TGG + Chr4:86636755-86636774 None:intergenic 20.0%
!! TTAAAATTGAAGAGATTAGA+AGG + Chr4:86634177-86634196 None:intergenic 20.0%
!! TTATGAATTAGATGCATTAA+AGG - Chr4:86635279-86635298 MsG0480023540.01.T01:intron 20.0%
!! TTGTTGTATTTCTCATAAAA+TGG - Chr4:86635083-86635102 MsG0480023540.01.T01:intron 20.0%
!! TTTATGAAATTGACATTATG+AGG - Chr4:86633092-86633111 MsG0480023540.01.T01:intron 20.0%
!!! AAACATACATGAATTTTAGT+GGG - Chr4:86634656-86634675 MsG0480023540.01.T01:intron 20.0%
!!! AGATGAAAAACAATTTTCAT+TGG - Chr4:86633498-86633517 MsG0480023540.01.T01:intron 20.0%
!!! AGTTTCTTATTTTTATACCA+TGG - Chr4:86631561-86631580 MsG0480023540.01.T01:intron 20.0%
!!! ATAGTATTTTGTGTTTTCTT+TGG - Chr4:86633459-86633478 MsG0480023540.01.T01:intron 20.0%
!!! ATGATTTCAAAAGTATGAAT+TGG - Chr4:86635140-86635159 MsG0480023540.01.T01:intron 20.0%
!!! ATTTTATATTCTACAAACAC+GGG - Chr4:86633260-86633279 MsG0480023540.01.T01:intron 20.0%
!!! GTCTTTTTTGCTTATATTTT+GGG - Chr4:86633652-86633671 MsG0480023540.01.T01:intron 20.0%
!!! GTTAAACTCTTGATATATTT+TGG - Chr4:86632865-86632884 MsG0480023540.01.T01:intron 20.0%
!!! GTTATTAAGGATTTTAACTA+TGG - Chr4:86631514-86631533 MsG0480023540.01.T01:intron 20.0%
!!! GTTTTAATATTGTTAAGGTT+GGG - Chr4:86634843-86634862 MsG0480023540.01.T01:intron 20.0%
!!! TCATAATTTGTATGATGTTA+TGG - Chr4:86635527-86635546 MsG0480023540.01.T01:intron 20.0%
!!! TGTCTTTTTTGCTTATATTT+TGG - Chr4:86633651-86633670 MsG0480023540.01.T01:intron 20.0%
!!! TTCTCTGAATTTTAATTTGA+TGG - Chr4:86635346-86635365 MsG0480023540.01.T01:intron 20.0%
!!! TTCTTTGGAAAAAGTTTTAT+AGG - Chr4:86633474-86633493 MsG0480023540.01.T01:intron 20.0%
!!! TTGATATATTTTGGATCAAA+GGG - Chr4:86632874-86632893 MsG0480023540.01.T01:intron 20.0%
!!! TTTGAAGTTTAAAGTCATAT+GGG - Chr4:86630815-86630834 MsG0480023540.01.T01:intron 20.0%
!!! TTTTGATTTGCTAATTTATG+TGG - Chr4:86632938-86632957 MsG0480023540.01.T01:intron 20.0%
!!! TTTTTACAACTAATAGTAAG+TGG - Chr4:86631982-86632001 MsG0480023540.01.T01:intron 20.0%
!!! TTTTTACTTTATGAATAGTG+AGG - Chr4:86635181-86635200 MsG0480023540.01.T01:intron 20.0%
! AAAAAGTTACCTCCATAAAA+GGG + Chr4:86631921-86631940 None:intergenic 25.0%
! AAAACTGAAAATGTGGAAAA+TGG + Chr4:86631271-86631290 None:intergenic 25.0%
! AAATACTTACCACTAGAATA+TGG + Chr4:86634901-86634920 None:intergenic 25.0%
! AAGTTTGTGGAAATTTATGT+AGG - Chr4:86634980-86634999 MsG0480023540.01.T01:intron 25.0%
! AATGCAAATATTTAGACAGT+TGG - Chr4:86636188-86636207 MsG0480023540.01.T01:intron 25.0%
! AATTATGACATGCATAGATA+AGG - Chr4:86635248-86635267 MsG0480023540.01.T01:intron 25.0%
! AATTGAATCTATTGACATGA+TGG + Chr4:86636424-86636443 None:intergenic 25.0%
! ACATACAAAACCATAAGATT+AGG + Chr4:86634398-86634417 None:intergenic 25.0%
! ACCTAAATTTCTCTTATCAA+TGG + Chr4:86636062-86636081 None:intergenic 25.0%
! ACTTAATTGCACTTAATAGA+TGG - Chr4:86636098-86636117 MsG0480023540.01.T01:intron 25.0%
! ATATAAGAAGGGAGAAAAAA+AGG - Chr4:86633702-86633721 MsG0480023540.01.T01:intron 25.0%
! ATCTATTAACCAAAAACTAG+TGG + Chr4:86636494-86636513 None:intergenic 25.0%
! ATGAAAAATGAAGATGAAAG+AGG + Chr4:86631898-86631917 None:intergenic 25.0%
! ATGCTACATGATAGTTTAAA+AGG + Chr4:86631588-86631607 None:intergenic 25.0%
! ATTGAAGCATGTTATGTAAA+AGG - Chr4:86631041-86631060 MsG0480023540.01.T01:CDS 25.0%
! ATTGCATGAATCAACATATT+AGG + Chr4:86636574-86636593 None:intergenic 25.0%
! CAATTATTTGAATGTTGTCA+TGG - Chr4:86635415-86635434 MsG0480023540.01.T01:intron 25.0%
! CAATTCTCATATGAGTATTT+AGG - Chr4:86632803-86632822 MsG0480023540.01.T01:intron 25.0%
! CATGTCAATAGATTCAATTT+AGG - Chr4:86636425-86636444 MsG0480023540.01.T01:intron 25.0%
! CATTCTAAATCATGCTATAT+AGG + Chr4:86631779-86631798 None:intergenic 25.0%
! CCCTACAAAAAAAAAAAGTA+CGG - Chr4:86633988-86634007 MsG0480023540.01.T01:intron 25.0%
! CGTTGTAAAATGTAAAATTC+GGG + Chr4:86637102-86637121 None:intergenic 25.0%
! CTAAAATTCATGTATGTTTG+AGG + Chr4:86634655-86634674 None:intergenic 25.0%
! CTATATAGCATGATTTAGAA+TGG - Chr4:86631777-86631796 MsG0480023540.01.T01:intron 25.0%
! GCACATTCATTATTCTAATA+TGG - Chr4:86632570-86632589 MsG0480023540.01.T01:intron 25.0%
! GGGAATATAAAAAATCACAT+GGG + Chr4:86632359-86632378 None:intergenic 25.0%
! GTAATAAAAAAAGTTGAGCT+AGG + Chr4:86635458-86635477 None:intergenic 25.0%
! GTGTATTATTACACATTGAA+TGG + Chr4:86631167-86631186 None:intergenic 25.0%
! GTTATAATGTGTTGTGTTAT+TGG - Chr4:86632319-86632338 MsG0480023540.01.T01:intron 25.0%
! GTTGAAGAAAATGAACAAAA+TGG - Chr4:86630338-86630357 MsG0480023540.01.T01:three_prime_UTR 25.0%
! TAAAATTCAGAGAAGAGAAA+AGG + Chr4:86635340-86635359 None:intergenic 25.0%
! TACAGATTGAAAAATGTGAT+AGG - Chr4:86635703-86635722 MsG0480023540.01.T01:intron 25.0%
! TACGACAATCAACTAATATT+AGG + Chr4:86632993-86633012 None:intergenic 25.0%
! TATCATTTCTCATAGTTATG+GGG + Chr4:86633787-86633806 None:intergenic 25.0%
! TCACATATTGTTCTACATAA+TGG - Chr4:86631230-86631249 MsG0480023540.01.T01:intron 25.0%
! TCCATTGATAAGAGAAATTT+AGG - Chr4:86636058-86636077 MsG0480023540.01.T01:intron 25.0%
! TTAATAAACCTGAAAACCTA+TGG - Chr4:86636236-86636255 MsG0480023540.01.T01:intron 25.0%
! TTCTTATGGTCAAAAAACAA+TGG + Chr4:86633899-86633918 None:intergenic 25.0%
! TTGATTATATAACGTCATCA+AGG - Chr4:86631637-86631656 MsG0480023540.01.T01:intron 25.0%
! TTGGAAATAGCAAAAATTGT+GGG + Chr4:86634021-86634040 None:intergenic 25.0%
! TTGGTTACTGGAAAATATTT+GGG - Chr4:86637016-86637035 MsG0480023540.01.T01:five_prime_UTR 25.0%
! TTTGATTATTTGATATGCAC+AGG - Chr4:86634595-86634614 MsG0480023540.01.T01:intron 25.0%
! TTTGGTTACTGGAAAATATT+TGG - Chr4:86637015-86637034 MsG0480023540.01.T01:five_prime_UTR 25.0%
! TTTGTAGCAATAGTATTAGT+AGG - Chr4:86633037-86633056 MsG0480023540.01.T01:intron 25.0%
!! AGCATTTGAGCTTTAATAAT+TGG - Chr4:86631603-86631622 MsG0480023540.01.T01:intron 25.0%
!! AGTATTTAGGTTCTATTGAT+GGG - Chr4:86632816-86632835 MsG0480023540.01.T01:intron 25.0%
!! ATGTTTAGTTCCATTTAGAT+AGG + Chr4:86631810-86631829 None:intergenic 25.0%
!! CAAACATACATGAATTTTAG+TGG - Chr4:86634655-86634674 MsG0480023540.01.T01:intron 25.0%
!! CATTTTCAGTTAAAAAAACC+TGG - Chr4:86636548-86636567 MsG0480023540.01.T01:intron 25.0%
!! CCTACAAAAAAAAAAAGTAC+GGG - Chr4:86633989-86634008 MsG0480023540.01.T01:intron 25.0%
!! GATTTTATGCTGAGTTTTTA+GGG - Chr4:86632636-86632655 MsG0480023540.01.T01:intron 25.0%
!! GTATGTCATAGTAAAACTTT+TGG + Chr4:86633360-86633379 None:intergenic 25.0%
!! GTCTTTTGCAAAGATTTAAT+AGG - Chr4:86631536-86631555 MsG0480023540.01.T01:intron 25.0%
!! TCAAGTATTGTGTACATTAA+AGG - Chr4:86632031-86632050 MsG0480023540.01.T01:intron 25.0%
!! TGTTTAGTTCCATTTAGATA+GGG + Chr4:86631809-86631828 None:intergenic 25.0%
!! TTTTTATGTTGCCTCTTTTA+TGG - Chr4:86636333-86636352 MsG0480023540.01.T01:intron 25.0%
!!! AAACAATTTTCATTGGCTAT+TGG - Chr4:86633505-86633524 MsG0480023540.01.T01:intron 25.0%
!!! AAACATTGATTCAAACACTT+TGG + Chr4:86634359-86634378 None:intergenic 25.0%
!!! AACATACATGAATTTTAGTG+GGG - Chr4:86634657-86634676 MsG0480023540.01.T01:intron 25.0%
!!! AACATTGATTCAAACACTTT+GGG + Chr4:86634358-86634377 None:intergenic 25.0%
!!! AACCACTTTTTAACAACTTT+TGG - Chr4:86633814-86633833 MsG0480023540.01.T01:intron 25.0%
!!! ATGTTGTTATTTTGAAGGAT+TGG - Chr4:86632485-86632504 MsG0480023540.01.T01:CDS 25.0%
!!! CCGTACTTTTTTTTTTTGTA+GGG + Chr4:86633991-86634010 None:intergenic 25.0%
!!! CGTACTTTTTTTTTTTGTAG+GGG + Chr4:86633990-86634009 None:intergenic 25.0%
!!! CGTTTTAATATTGTTAAGGT+TGG - Chr4:86634842-86634861 MsG0480023540.01.T01:intron 25.0%
!!! CTTGATATATTTTGGATCAA+AGG - Chr4:86632873-86632892 MsG0480023540.01.T01:intron 25.0%
!!! CTTTGAAGTTTAAAGTCATA+TGG - Chr4:86630814-86630833 MsG0480023540.01.T01:intron 25.0%
!!! GTACTTTTTTTTTTTGTAGG+GGG + Chr4:86633989-86634008 None:intergenic 25.0%
!!! GTCTCGTTTTAATATTGTTA+AGG - Chr4:86634838-86634857 MsG0480023540.01.T01:intron 25.0%
!!! GTTTTGAAAACTTGATTTTG+TGG - Chr4:86630290-86630309 MsG0480023540.01.T01:intron 25.0%
!!! TACTTTTTTTTTTTGTAGGG+GGG + Chr4:86633988-86634007 None:intergenic 25.0%
!!! TCATTGTCGTTAGTTTTTAT+AGG - Chr4:86633218-86633237 MsG0480023540.01.T01:intron 25.0%
!!! TGTTGTTATTTTGAAGGATT+GGG - Chr4:86632486-86632505 MsG0480023540.01.T01:CDS 25.0%
!!! TTCATTTTTCATCCCTTTTA+TGG - Chr4:86631906-86631925 MsG0480023540.01.T01:CDS 25.0%
!!! TTTACTGTTCTGTTTTGTTT+AGG + Chr4:86636899-86636918 None:intergenic 25.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr4:86633886-86633905 None:intergenic 30.0%
AAAACTGTGTTTGTAGGAAT+TGG - Chr4:86635837-86635856 MsG0480023540.01.T01:intron 30.0%
AAATGAGAGTGAAAAAGGAA+AGG + Chr4:86630032-86630051 None:intergenic 30.0%
AAGAGAAAAGGAGTTCAAAT+GGG + Chr4:86635328-86635347 None:intergenic 30.0%
AATAACAACATTCTGCTCAT+AGG + Chr4:86632476-86632495 None:intergenic 30.0%
AATAAGAGACTTACCTTCAA+AGG + Chr4:86630430-86630449 None:intergenic 30.0%
ACTAACCTGTTTACCATTAA+GGG - Chr4:86632400-86632419 MsG0480023540.01.T01:intron 30.0%
AGAATTTCTCATAGAGAAGA+AGG + Chr4:86636723-86636742 None:intergenic 30.0%
ATAACAACATTCTGCTCATA+GGG + Chr4:86632475-86632494 None:intergenic 30.0%
ATAATGAATGTGCCAGATTA+AGG + Chr4:86632563-86632582 None:intergenic 30.0%
ATGATAGTTTAAAAGGACCA+TGG + Chr4:86631581-86631600 None:intergenic 30.0%
ATGCTTCAAAACTGAAAATG+TGG + Chr4:86631278-86631297 None:intergenic 30.0%
ATGTATAAATACAGAGGATG+CGG - Chr4:86636854-86636873 MsG0480023540.01.T01:five_prime_UTR 30.0%
CAAAAAGTTACCTCCATAAA+AGG + Chr4:86631922-86631941 None:intergenic 30.0%
CAGATAATTGCTTCATGATA+AGG - Chr4:86636620-86636639 MsG0480023540.01.T01:intron 30.0%
CATAAGAAGTGAGAAAAACA+AGG - Chr4:86633911-86633930 MsG0480023540.01.T01:intron 30.0%
CGGGAATATAAAAAATCACA+TGG + Chr4:86632360-86632379 None:intergenic 30.0%
GAAACAAGGTTTGCAATATT+GGG + Chr4:86635592-86635611 None:intergenic 30.0%
GAATTTCTCATAGAGAAGAA+GGG + Chr4:86636722-86636741 None:intergenic 30.0%
GATGAATACAATACAGTCAA+AGG - Chr4:86634470-86634489 MsG0480023540.01.T01:intron 30.0%
GATTCTGTTTAGATACAGTT+TGG - Chr4:86634929-86634948 MsG0480023540.01.T01:intron 30.0%
GTATTGTGTACATTAAAGGA+TGG - Chr4:86632035-86632054 MsG0480023540.01.T01:intron 30.0%
GTCCAAAAGTTGTTAAAAAG+TGG + Chr4:86633819-86633838 None:intergenic 30.0%
GTTATTACATGTATGCAACA+GGG - Chr4:86632442-86632461 MsG0480023540.01.T01:CDS 30.0%
GTTGGAAATAGCAAAAATTG+TGG + Chr4:86634022-86634041 None:intergenic 30.0%
GTTTACACTAACTGTCAATT+TGG - Chr4:86636997-86637016 MsG0480023540.01.T01:five_prime_UTR 30.0%
TACTAACCTGTTTACCATTA+AGG - Chr4:86632399-86632418 MsG0480023540.01.T01:intron 30.0%
TATGATCATTCAAATCAACC+AGG - Chr4:86630491-86630510 MsG0480023540.01.T01:CDS 30.0%
TATTAGTTGATTGTCGTAGT+TGG - Chr4:86632995-86633014 MsG0480023540.01.T01:intron 30.0%
TCAACCTTAGAGTGAATATA+AGG - Chr4:86630564-86630583 MsG0480023540.01.T01:CDS 30.0%
TCAACCTTATATTCACTCTA+AGG + Chr4:86630571-86630590 None:intergenic 30.0%
TCAATGTTGCAATTAACCAT+TGG + Chr4:86634561-86634580 None:intergenic 30.0%
TCTTCTACAGAAATTCAGTT+CGG - Chr4:86635893-86635912 MsG0480023540.01.T01:intron 30.0%
TGGTTAATAGATGAAATCCA+TGG - Chr4:86636502-86636521 MsG0480023540.01.T01:intron 30.0%
TTATAGTTCAAAGCTTACGT+TGG + Chr4:86631683-86631702 None:intergenic 30.0%
TTGAACTCTTTCATCAACTT+TGG + Chr4:86634134-86634153 None:intergenic 30.0%
TTGTAGTGATCCTAATCTTA+TGG - Chr4:86634385-86634404 MsG0480023540.01.T01:intron 30.0%
TTTACAAAAGTTTAGGCTCA+TGG + Chr4:86632282-86632301 None:intergenic 30.0%
TTTCCACAAACTTAAAGTGA+AGG + Chr4:86634973-86634992 None:intergenic 30.0%
! AAAAGTATGAATTGGTAGTC+TGG - Chr4:86635148-86635167 MsG0480023540.01.T01:intron 30.0%
! AGGCAGTTTATGCTTTTATT+TGG - Chr4:86633112-86633131 MsG0480023540.01.T01:intron 30.0%
! ATTTTTCATCCCTTTTATGG+AGG - Chr4:86631909-86631928 MsG0480023540.01.T01:CDS 30.0%
! GAGTATTTAGGTTCTATTGA+TGG - Chr4:86632815-86632834 MsG0480023540.01.T01:intron 30.0%
! GGATTTTATGCTGAGTTTTT+AGG - Chr4:86632635-86632654 MsG0480023540.01.T01:intron 30.0%
! GTATTTAGGTTCTATTGATG+GGG - Chr4:86632817-86632836 MsG0480023540.01.T01:intron 30.0%
! GTTTTATATTCTTCTCACGA+GGG - Chr4:86633311-86633330 MsG0480023540.01.T01:intron 30.0%
! TTTCCTTCACTTTAAGTTTG+TGG - Chr4:86634967-86634986 MsG0480023540.01.T01:intron 30.0%
! TTTTATATTCTTCTCACGAG+GGG - Chr4:86633312-86633331 MsG0480023540.01.T01:intron 30.0%
! TTTTGAATGTGCATGCATAT+GGG - Chr4:86631837-86631856 MsG0480023540.01.T01:intron 30.0%
!! AGTTTTATATTCTTCTCACG+AGG - Chr4:86633310-86633329 MsG0480023540.01.T01:intron 30.0%
!! ATGGAGGTAACTTTTTGAAA+TGG - Chr4:86631925-86631944 MsG0480023540.01.T01:CDS 30.0%
!! ATTGCTTTTCAACAACTTGA+GGG + Chr4:86632763-86632782 None:intergenic 30.0%
!! ATTTTGATGCTTGTTGGTTA+CGG - Chr4:86636929-86636948 MsG0480023540.01.T01:five_prime_UTR 30.0%
!! CTTGTTTTTCTCACTTCTTA+TGG + Chr4:86633913-86633932 None:intergenic 30.0%
!! CTTTCTTTTAAGTAAGGATG+TGG + Chr4:86636806-86636825 None:intergenic 30.0%
!! TATTGCTTTTCAACAACTTG+AGG + Chr4:86632764-86632783 None:intergenic 30.0%
!! TCAACAATTTTGATGCTTGT+TGG - Chr4:86636923-86636942 MsG0480023540.01.T01:five_prime_UTR 30.0%
!! TGAAGCTTTAAAACACTGTT+TGG + Chr4:86635026-86635045 None:intergenic 30.0%
!! TTCTATCATTTTAGTGCCAT+AGG + Chr4:86636255-86636274 None:intergenic 30.0%
!! TTTTTGATTGATGAGAGAGA+GGG + Chr4:86629995-86630014 None:intergenic 30.0%
!!! AATCACTGCAAATCGTTTTT+TGG - Chr4:86630268-86630287 MsG0480023540.01.T01:intron 30.0%
!!! CCCGTACTTTTTTTTTTTGT+AGG + Chr4:86633992-86634011 None:intergenic 30.0%
!!! CTTATGGTTTTGTATGTGTT+AGG - Chr4:86634401-86634420 MsG0480023540.01.T01:intron 30.0%
!!! GCAGAATGTTGTTATTTTGA+AGG - Chr4:86632480-86632499 MsG0480023540.01.T01:CDS 30.0%
!!! GTTTTAAAGCTTCAACCTAA+AGG - Chr4:86635032-86635051 MsG0480023540.01.T01:intron 30.0%
!!! TCAAATGTACCACTAGTTTT+TGG - Chr4:86636482-86636501 MsG0480023540.01.T01:intron 30.0%
!!! TGATTTTTTATATTCCCGCA+TGG - Chr4:86632362-86632381 MsG0480023540.01.T01:intron 30.0%
!!! TTTTTTGATTGATGAGAGAG+AGG + Chr4:86629996-86630015 None:intergenic 30.0%
AAACAGATGGTACAGATAGT+TGG + Chr4:86629859-86629878 None:intergenic 35.0%
AATCATTCAAGCACATCGAA+AGG - Chr4:86630211-86630230 MsG0480023540.01.T01:intron 35.0%
AATGTTGCTGATCAAGAGAA+AGG + Chr4:86631450-86631469 None:intergenic 35.0%
AATTAGTACCATATGCTGGA+AGG - Chr4:86636671-86636690 MsG0480023540.01.T01:intron 35.0%
AATTTGATGCATAAGCCATG+CGG + Chr4:86632380-86632399 None:intergenic 35.0%
AATTTGCAGAATGCAAGTCA+AGG + Chr4:86636781-86636800 None:intergenic 35.0%
ACATGATCATGGCTTAATGA+TGG - Chr4:86632073-86632092 MsG0480023540.01.T01:intron 35.0%
ACGAAATTAGTACCATATGC+TGG - Chr4:86636667-86636686 MsG0480023540.01.T01:intron 35.0%
ACGTAAATCTCTGAGCTTAA+TGG - Chr4:86630394-86630413 MsG0480023540.01.T01:three_prime_UTR 35.0%
ACTCCATCATCTTTAAACCA+GGG - Chr4:86635392-86635411 MsG0480023540.01.T01:intron 35.0%
ATCATTCAAATCAACCAGGA+TGG - Chr4:86630495-86630514 MsG0480023540.01.T01:CDS 35.0%
ATGAATCAACATATTAGGCC+AGG + Chr4:86636569-86636588 None:intergenic 35.0%
ATGACATGCATAGATAAGGT+TGG - Chr4:86635252-86635271 MsG0480023540.01.T01:intron 35.0%
ATGTTGCTGATCAAGAGAAA+GGG + Chr4:86631449-86631468 None:intergenic 35.0%
CAACATTCAAATAATTGCCC+TGG + Chr4:86635412-86635431 None:intergenic 35.0%
CTAAATAGGTCAAGGAAACA+AGG + Chr4:86635606-86635625 None:intergenic 35.0%
CTAACTGTCAATTTGGTTAC+TGG - Chr4:86637004-86637023 MsG0480023540.01.T01:five_prime_UTR 35.0%
CTATATATGTACTCTTGTGC+TGG - Chr4:86635645-86635664 MsG0480023540.01.T01:intron 35.0%
CTGATGCTTCAAAAAACAGA+TGG + Chr4:86629872-86629891 None:intergenic 35.0%
CTTGTTTCCTTGACCTATTT+AGG - Chr4:86635604-86635623 MsG0480023540.01.T01:intron 35.0%
GAAAAATGTGATAGGCCATT+TGG - Chr4:86635711-86635730 MsG0480023540.01.T01:intron 35.0%
GAAACAATTGACACTGAATG+AGG - Chr4:86636971-86636990 MsG0480023540.01.T01:five_prime_UTR 35.0%
GAACTAAATCCATTTACGCA+TGG + Chr4:86635954-86635973 None:intergenic 35.0%
GAAGAGAAAAGGAGTTCAAA+TGG + Chr4:86635329-86635348 None:intergenic 35.0%
GATAAGGAAATGTAGCAGTT+AGG - Chr4:86636636-86636655 MsG0480023540.01.T01:intron 35.0%
GATAGTCTTTCTCAATCAGA+AGG - Chr4:86634441-86634460 MsG0480023540.01.T01:intron 35.0%
GCATGTGACACTAATCTAAA+GGG - Chr4:86632662-86632681 MsG0480023540.01.T01:intron 35.0%
GGAAACAAGGTTTGCAATAT+TGG + Chr4:86635593-86635612 None:intergenic 35.0%
GGTGAATCCATTGTAAAGTT+GGG + Chr4:86630172-86630191 None:intergenic 35.0%
GGTTATTACATGTATGCAAC+AGG - Chr4:86632441-86632460 MsG0480023540.01.T01:CDS 35.0%
GTACACAATACTTGACATCA+TGG + Chr4:86632026-86632045 None:intergenic 35.0%
GTCAAATCCCAACTTTACAA+TGG - Chr4:86630162-86630181 MsG0480023540.01.T01:intron 35.0%
GTTGACAACATACATGATCA+TGG - Chr4:86632062-86632081 MsG0480023540.01.T01:CDS 35.0%
TAAAGTTGGGATTTGACGTA+TGG + Chr4:86630159-86630178 None:intergenic 35.0%
TAAGTGTACAAAAGTGGTGT+TGG + Chr4:86636749-86636768 None:intergenic 35.0%
TAATCTAAAGGGAGTCAAAC+TGG - Chr4:86632673-86632692 MsG0480023540.01.T01:intron 35.0%
TCAGTTAGAGAATGAGACAA+AGG + Chr4:86631022-86631041 None:intergenic 35.0%
TCATCAATCTGCCATAAAAG+AGG + Chr4:86636347-86636366 None:intergenic 35.0%
TCATTCAAATCAACCAGGAT+GGG - Chr4:86630496-86630515 MsG0480023540.01.T01:CDS 35.0%
TGACATGCATAGATAAGGTT+GGG - Chr4:86635253-86635272 MsG0480023540.01.T01:intron 35.0%
TGATTACAGTGAGCGAATTT+GGG + Chr4:86630105-86630124 None:intergenic 35.0%
TGCATGTGACACTAATCTAA+AGG - Chr4:86632661-86632680 MsG0480023540.01.T01:intron 35.0%
TGCTTCAAAACTGTGTTTGT+AGG - Chr4:86635831-86635850 MsG0480023540.01.T01:intron 35.0%
TGTGAAATGTTTCATAGTCG+CGG - Chr4:86636016-86636035 MsG0480023540.01.T01:intron 35.0%
TGTTGCAATTAACCATTGGA+AGG + Chr4:86634557-86634576 None:intergenic 35.0%
TTAAAGCTTCAACCTAAAGG+TGG - Chr4:86635035-86635054 MsG0480023540.01.T01:intron 35.0%
TTACTACACTTCTACATTGC+AGG + Chr4:86636830-86636849 None:intergenic 35.0%
TTATATTCTACAAACACGGG+AGG - Chr4:86633263-86633282 MsG0480023540.01.T01:intron 35.0%
TTGATATGCACAGGTTCTAT+AGG - Chr4:86634604-86634623 MsG0480023540.01.T01:intron 35.0%
TTGATTACAGTGAGCGAATT+TGG + Chr4:86630106-86630125 None:intergenic 35.0%
TTGTCTAACGAATCCCTTAA+TGG + Chr4:86632416-86632435 None:intergenic 35.0%
TTTATATTCTTCTCACGAGG+GGG - Chr4:86633313-86633332 MsG0480023540.01.T01:intron 35.0%
TTTCGATGTGCTTGAATGAT+TGG + Chr4:86630212-86630231 None:intergenic 35.0%
! AGTCTTTTACCATGCGTAAA+TGG - Chr4:86635942-86635961 MsG0480023540.01.T01:intron 35.0%
! CTTCAAGTTAGAATTGACTC+TGG - Chr4:86634231-86634250 MsG0480023540.01.T01:intron 35.0%
! GCTATTTCCAACAAATAGCA+TGG - Chr4:86634030-86634049 MsG0480023540.01.T01:intron 35.0%
! GGGTTTTTGTCTAAATCAGT+TGG + Chr4:86630705-86630724 None:intergenic 35.0%
! TGAAGCATCAGCAAGTAAAA+TGG - Chr4:86629881-86629900 MsG0480023540.01.T01:three_prime_UTR 35.0%
! TGGAAAATATTTGGGATACC+AGG - Chr4:86637024-86637043 MsG0480023540.01.T01:five_prime_UTR 35.0%
! TGTAGTTCTGTGATTCAGAT+AGG + Chr4:86630061-86630080 None:intergenic 35.0%
! TTTTAGTGCCATAGGTTTTC+AGG + Chr4:86636247-86636266 None:intergenic 35.0%
!! CAGGATGGGTTATTTGTTTA+GGG - Chr4:86630510-86630529 MsG0480023540.01.T01:CDS 35.0%
!! CATGAATTTTAGTGGGGAAT+CGG - Chr4:86634663-86634682 MsG0480023540.01.T01:intron 35.0%
!! GCAGGTCTTTCTTTTAAGTA+AGG + Chr4:86636812-86636831 None:intergenic 35.0%
!! GCTTTAAAACACTGTTTGGA+AGG + Chr4:86635022-86635041 None:intergenic 35.0%
!! GTTTTGAATGTGCATGCATA+TGG - Chr4:86631836-86631855 MsG0480023540.01.T01:intron 35.0%
!! TAATCCTCCAATTGCTTTTG+AGG + Chr4:86636219-86636238 None:intergenic 35.0%
!!! ATATGGAGTTTTAGTTTGCC+TGG + Chr4:86637045-86637064 None:intergenic 35.0%
!!! TGGTTTTGTATGTGTTAGGT+TGG - Chr4:86634405-86634424 MsG0480023540.01.T01:intron 35.0%
AAAAGTTGCCTTCCAGCATA+TGG + Chr4:86636682-86636701 None:intergenic 40.0%
AAGTCTGCCATACCTTAATC+TGG - Chr4:86632548-86632567 MsG0480023540.01.T01:intron 40.0%
AATGTGATAGGCCATTTGGA+TGG - Chr4:86635715-86635734 MsG0480023540.01.T01:intron 40.0%
ACCACTAGAATATGGTGCAA+GGG + Chr4:86634893-86634912 None:intergenic 40.0%
ACGCATGGTAAAAGACTAGA+AGG + Chr4:86635939-86635958 None:intergenic 40.0%
ACTCGATAATATGCAGCAAG+TGG + Chr4:86634869-86634888 None:intergenic 40.0%
AGAAGGTAGTTTACCAGAGA+GGG + Chr4:86634160-86634179 None:intergenic 40.0%
ATACAGTCAAAGGCCTTGAT+TGG - Chr4:86634480-86634499 MsG0480023540.01.T01:intron 40.0%
ATGAGTCTCTCCTTATGACA+GGG + Chr4:86631875-86631894 None:intergenic 40.0%
ATGCTAGCACATACACAATG+TGG + Chr4:86636531-86636550 None:intergenic 40.0%
ATGGCAGATTGATGAGTCAT+TGG - Chr4:86636352-86636371 MsG0480023540.01.T01:intron 40.0%
ATTGATGAGTCATTGGAGCA+GGG - Chr4:86636359-86636378 MsG0480023540.01.T01:intron 40.0%
ATTTGATGCATAAGCCATGC+GGG + Chr4:86632379-86632398 None:intergenic 40.0%
CAAGGTTTGCAATATTGGGA+TGG + Chr4:86635588-86635607 None:intergenic 40.0%
CAATCTAACTCCCTGTCATA+AGG - Chr4:86631862-86631881 MsG0480023540.01.T01:intron 40.0%
CAGTTGCTCTTGAGCAAAAT+TGG + Chr4:86634265-86634284 None:intergenic 40.0%
CCTAAACAAATAACCCATCC+TGG + Chr4:86630512-86630531 None:intergenic 40.0%
CGAATCCCTTAATGGTAAAC+AGG + Chr4:86632408-86632427 None:intergenic 40.0%
CGGTGAATCCATTGTAAAGT+TGG + Chr4:86630173-86630192 None:intergenic 40.0%
CTTAAATCCATAGTTCCAGG+AGG + Chr4:86635867-86635886 None:intergenic 40.0%
GAATGTGCCAGATTAAGGTA+TGG + Chr4:86632558-86632577 None:intergenic 40.0%
GACTCCATCATCTTTAAACC+AGG - Chr4:86635391-86635410 MsG0480023540.01.T01:intron 40.0%
GAGAGAAAAAGGAAAGAGAG+AGG + Chr4:86633875-86633894 None:intergenic 40.0%
GAGGCAAATGAGAGTGAAAA+AGG + Chr4:86630037-86630056 None:intergenic 40.0%
GATGCGGAGTAAAACAAGAA+GGG - Chr4:86636870-86636889 MsG0480023540.01.T01:five_prime_UTR 40.0%
GCAATTAACCATTGGAAGGT+TGG + Chr4:86634553-86634572 None:intergenic 40.0%
GCTCTTAAATCCATAGTTCC+AGG + Chr4:86635870-86635889 None:intergenic 40.0%
GGGATTCGTTAGACAAAGAA+AGG - Chr4:86632420-86632439 MsG0480023540.01.T01:intron 40.0%
GGGGAGTTTAGGTAAACTAA+CGG - Chr4:86632836-86632855 MsG0480023540.01.T01:intron 40.0%
GTTAAACCCATTGAGCACTA+AGG + Chr4:86636402-86636421 None:intergenic 40.0%
GTTCTATTGATGGGGAGTTT+AGG - Chr4:86632825-86632844 MsG0480023540.01.T01:intron 40.0%
TAACACACACACACTGAAAC+TGG - Chr4:86634726-86634745 MsG0480023540.01.T01:intron 40.0%
TACCACTAGAATATGGTGCA+AGG + Chr4:86634894-86634913 None:intergenic 40.0%
TAGAAGGTAGTTTACCAGAG+AGG + Chr4:86634161-86634180 None:intergenic 40.0%
TCAAAGGCCTTGATTGGAAT+AGG - Chr4:86634486-86634505 MsG0480023540.01.T01:intron 40.0%
TCTACAGAAATTCAGTTCGG+TGG - Chr4:86635896-86635915 MsG0480023540.01.T01:intron 40.0%
TGATGCACCTATTCCAATCA+AGG + Chr4:86634496-86634515 None:intergenic 40.0%
TGCTTATGTTATGGGACGAA+GGG + Chr4:86633384-86633403 None:intergenic 40.0%
TGGTATGCTCCCTATCTAAA+TGG - Chr4:86631797-86631816 MsG0480023540.01.T01:intron 40.0%
TGTAATGCCAGCTCCTAAAT+AGG + Chr4:86635620-86635639 None:intergenic 40.0%
TTAGGACCTTAGTGCTCAAT+GGG - Chr4:86636393-86636412 MsG0480023540.01.T01:intron 40.0%
TTCAAACGACTCAGTTGTGT+TGG + Chr4:86630375-86630394 None:intergenic 40.0%
TTCAACCTAAAGGTGGACAT+GGG - Chr4:86635042-86635061 MsG0480023540.01.T01:intron 40.0%
TTCTGTGATTCAGATAGGAG+AGG + Chr4:86630056-86630075 None:intergenic 40.0%
TTGCAAGTCGAGGAAAATCA+CGG + Chr4:86635744-86635763 None:intergenic 40.0%
TTGCCCTGGTTTAAAGATGA+TGG + Chr4:86635398-86635417 None:intergenic 40.0%
TTGCTTATGTTATGGGACGA+AGG + Chr4:86633385-86633404 None:intergenic 40.0%
! CAAGTTAGAATTGACTCTGG+AGG - Chr4:86634234-86634253 MsG0480023540.01.T01:intron 40.0%
! CAGTTGCTGCAGATTTTGTT+TGG - Chr4:86631111-86631130 MsG0480023540.01.T01:intron 40.0%
! GTAAAAGGTACAGCTGAAGA+AGG - Chr4:86631056-86631075 MsG0480023540.01.T01:CDS 40.0%
! TTTGCTATCCAACCTTCCAA+TGG - Chr4:86634542-86634561 MsG0480023540.01.T01:intron 40.0%
!! CCAGGATGGGTTATTTGTTT+AGG - Chr4:86630509-86630528 MsG0480023540.01.T01:CDS 40.0%
!! GATTTTCCTCGACTTGCAAT+CGG - Chr4:86635745-86635764 MsG0480023540.01.T01:intron 40.0%
!! GTTGTGTTATTGGCTCTCAA+TGG - Chr4:86632329-86632348 MsG0480023540.01.T01:intron 40.0%
!! TGGCGTTGATAATCCTTTGA+AGG - Chr4:86630414-86630433 MsG0480023540.01.T01:three_prime_UTR 40.0%
!!! AGGAGAAGTACCAGTTTTGT+TGG - Chr4:86634624-86634643 MsG0480023540.01.T01:intron 40.0%
AAACACTTTGGGTGCACGTT+TGG + Chr4:86634347-86634366 None:intergenic 45.0%
AAACGACTCAGTTGTGTTGG+TGG + Chr4:86630372-86630391 None:intergenic 45.0%
AAAGGGAGTCAAACTGGATG+AGG - Chr4:86632679-86632698 MsG0480023540.01.T01:intron 45.0%
AAGAGTTCAATCTCCCTCTC+TGG - Chr4:86634144-86634163 MsG0480023540.01.T01:intron 45.0%
AATAGCATGGCGTGAGTTCA+AGG - Chr4:86634043-86634062 MsG0480023540.01.T01:intron 45.0%
AATCACGGGAACCATCCAAA+TGG + Chr4:86635729-86635748 None:intergenic 45.0%
AATGTTCACTCTCCCTCACA+TGG - Chr4:86636591-86636610 MsG0480023540.01.T01:CDS 45.0%
AATTTGGGAGAGAGGGAGAA+GGG + Chr4:86630090-86630109 None:intergenic 45.0%
ACACACACTGAAACTGGTCA+TGG - Chr4:86634732-86634751 MsG0480023540.01.T01:intron 45.0%
AGTTGGGATTTGACGTATGG+CGG + Chr4:86630156-86630175 None:intergenic 45.0%
CATACACAATGTGGTGACCA+TGG + Chr4:86636522-86636541 None:intergenic 45.0%
CTTCAACCTAAAGGTGGACA+TGG - Chr4:86635041-86635060 MsG0480023540.01.T01:intron 45.0%
GATGAGTCTCTCCTTATGAC+AGG + Chr4:86631876-86631895 None:intergenic 45.0%
GATTGATGAGTCATTGGAGC+AGG - Chr4:86636358-86636377 MsG0480023540.01.T01:intron 45.0%
GGATGCGGAGTAAAACAAGA+AGG - Chr4:86636869-86636888 MsG0480023540.01.T01:five_prime_UTR 45.0%
GGGGGGTAGTAGTATAGTTA+TGG + Chr4:86633971-86633990 None:intergenic 45.0%
GGTGTGACCTCAAAAGCAAT+TGG - Chr4:86636209-86636228 MsG0480023540.01.T01:intron 45.0%
GTAGGAATTGGAAATCCTCC+TGG - Chr4:86635849-86635868 MsG0480023540.01.T01:intron 45.0%
GTGACCTCAAAAGCAATTGG+AGG - Chr4:86636212-86636231 MsG0480023540.01.T01:intron 45.0%
GTTAGGACCTTAGTGCTCAA+TGG - Chr4:86636392-86636411 MsG0480023540.01.T01:intron 45.0%
TATCTGCTAGAGCCATGTGA+GGG + Chr4:86636606-86636625 None:intergenic 45.0%
TCCTTGACCTATTTAGGAGC+TGG - Chr4:86635610-86635629 MsG0480023540.01.T01:intron 45.0%
TGAGGTTTCGCCAACAAAAC+TGG + Chr4:86634637-86634656 None:intergenic 45.0%
TGATTGATGAGAGAGAGGGA+GGG + Chr4:86629991-86630010 None:intergenic 45.0%
TGCAAGTCGAGGAAAATCAC+GGG + Chr4:86635743-86635762 None:intergenic 45.0%
TGGAAATCCTCCTGGAACTA+TGG - Chr4:86635857-86635876 MsG0480023540.01.T01:intron 45.0%
TTATCTGCTAGAGCCATGTG+AGG + Chr4:86636607-86636626 None:intergenic 45.0%
TTGATTGATGAGAGAGAGGG+AGG + Chr4:86629992-86630011 None:intergenic 45.0%
TTGGACGACAATAGCTTCAG+CGG + Chr4:86630193-86630212 None:intergenic 45.0%
! ACTCACGCCATGCTATTTGT+TGG + Chr4:86634040-86634059 None:intergenic 45.0%
! ATGGCAGACTTGCAGTTTTG+AGG + Chr4:86632539-86632558 None:intergenic 45.0%
! GTCATATGGGCTGAAACACT+TGG - Chr4:86630828-86630847 MsG0480023540.01.T01:intron 45.0%
! TGCTTTTGAGCGTGAGAACA+GGG + Chr4:86629829-86629848 None:intergenic 45.0%
!! TGGCAGACTTGCAGTTTTGA+GGG + Chr4:86632538-86632557 None:intergenic 45.0%
!! TTGCTTTTGAGCGTGAGAAC+AGG + Chr4:86629830-86629849 None:intergenic 45.0%
AACTGACCGATTGCAAGTCG+AGG + Chr4:86635754-86635773 None:intergenic 50.0%
ACGAGGGGGCTATAGTTACT+AGG - Chr4:86633327-86633346 MsG0480023540.01.T01:intron 50.0%
AGCAGGGAGTTCAAGCTGTT+AGG - Chr4:86636375-86636394 MsG0480023540.01.T01:intron 50.0%
AGTGAGCGAATTTGGGAGAG+AGG + Chr4:86630098-86630117 None:intergenic 50.0%
GAATTTGGGAGAGAGGGAGA+AGG + Chr4:86630091-86630110 None:intergenic 50.0%
GCCAGCTCCTAAATAGGTCA+AGG + Chr4:86635614-86635633 None:intergenic 50.0%
GCCCTTGCACCATATTCTAG+TGG - Chr4:86634889-86634908 MsG0480023540.01.T01:intron 50.0%
GCGGAGTAAAACAAGAAGGG+AGG - Chr4:86636873-86636892 MsG0480023540.01.T01:five_prime_UTR 50.0%
GTGAGCGAATTTGGGAGAGA+GGG + Chr4:86630097-86630116 None:intergenic 50.0%
GTTGGTTACGGCATTGTGTG+TGG - Chr4:86636941-86636960 MsG0480023540.01.T01:five_prime_UTR 50.0%
TGATGCCCATGTCCACCTTT+AGG + Chr4:86635050-86635069 None:intergenic 50.0%
! CAGTTCGGTGGAAAGAAAGC+AGG - Chr4:86635908-86635927 MsG0480023540.01.T01:intron 50.0%
GGCGATTTCAGATTCGACGG+TGG + Chr4:86630135-86630154 None:intergenic 55.0%
GGCGGCGATTTCAGATTCGA+CGG + Chr4:86630138-86630157 None:intergenic 55.0%
GGTGGACATGGGCATCACAA+CGG - Chr4:86635053-86635072 MsG0480023540.01.T01:intron 55.0%
GTGGACATGGGCATCACAAC+GGG - Chr4:86635054-86635073 MsG0480023540.01.T01:intron 55.0%
AGAGAGGGAGGGAGAGCGAA+GGG + Chr4:86629980-86629999 None:intergenic 60.0%
GAGAGAGGGAGGGAGAGCGA+AGG + Chr4:86629981-86630000 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 86629813 86637134 86629813 ID=MsG0480023540.01;Name=MsG0480023540.01
Chr4 mRNA 86629813 86637134 86629813 ID=MsG0480023540.01.T01;Parent=MsG0480023540.01;Name=MsG0480023540.01.T01;_AED=0.49;_eAED=0.49;_QI=368|0.88|0.9|1|0.88|0.8|10|410|218
Chr4 exon 86629813 86630056 86629813 ID=MsG0480023540.01.T01:exon:6457;Parent=MsG0480023540.01.T01
Chr4 exon 86630306 86630588 86630306 ID=MsG0480023540.01.T01:exon:6456;Parent=MsG0480023540.01.T01
Chr4 exon 86631018 86631094 86631018 ID=MsG0480023540.01.T01:exon:6455;Parent=MsG0480023540.01.T01
Chr4 exon 86631181 86631239 86631181 ID=MsG0480023540.01.T01:exon:6454;Parent=MsG0480023540.01.T01
Chr4 exon 86631872 86631945 86631872 ID=MsG0480023540.01.T01:exon:6453;Parent=MsG0480023540.01.T01
Chr4 exon 86632037 86632087 86632037 ID=MsG0480023540.01.T01:exon:6452;Parent=MsG0480023540.01.T01
Chr4 exon 86632263 86632330 86632263 ID=MsG0480023540.01.T01:exon:6451;Parent=MsG0480023540.01.T01
Chr4 exon 86632440 86632524 86632440 ID=MsG0480023540.01.T01:exon:6450;Parent=MsG0480023540.01.T01
Chr4 exon 86636552 86636625 86636552 ID=MsG0480023540.01.T01:exon:6449;Parent=MsG0480023540.01.T01
Chr4 exon 86636715 86637134 86636715 ID=MsG0480023540.01.T01:exon:6448;Parent=MsG0480023540.01.T01
Chr4 five_prime_UTR 86636767 86637134 86636767 ID=MsG0480023540.01.T01:five_prime_utr;Parent=MsG0480023540.01.T01
Chr4 CDS 86636715 86636766 86636715 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 CDS 86636552 86636625 86636552 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 CDS 86632440 86632524 86632440 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 CDS 86632263 86632330 86632263 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 CDS 86632037 86632087 86632037 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 CDS 86631872 86631945 86631872 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 CDS 86631181 86631239 86631181 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 CDS 86631018 86631094 86631018 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 CDS 86630472 86630588 86630472 ID=MsG0480023540.01.T01:cds;Parent=MsG0480023540.01.T01
Chr4 three_prime_UTR 86630306 86630471 86630306 ID=MsG0480023540.01.T01:three_prime_utr;Parent=MsG0480023540.01.T01
Chr4 three_prime_UTR 86629813 86630056 86629813 ID=MsG0480023540.01.T01:three_prime_utr;Parent=MsG0480023540.01.T01
Gene Sequence

>MsG0480023540.01.T01

ATGGATTCACCGCTGAAGCTATTGTCGTCCAATCATTCAAGCACATCGAAAGCTGAAACGCACAACACGTTGAAGAAAATGAACAAAATGGTGTTGAGACCACCAACACAACTGAGTCGTTTGAACGTTGGATTTGAAATAATTGATAGTCTTTCTCAATCAGAAGGTATTCTGATGAATACAATACAGTCAAAGGCCTTGATTGGAATAGGTTCTATAGGAGAAGTACCAGTTTTGTTGGCGAAACCTCAAACATACATGAATTTTAGTGGGGAATCGGTTGGGCCACTTGCTGCATATTATCGAGTGCCCTTGCACCATATTCTAGTGGTTTATGATGAAACTAGCCTTCCAAACAGTGTTTTAAAGCTTCAACCTAAAGGTGGACATGGGCATCACAACGGATTGAAAAATGTGATAGGCCATTTGGATGGTTCCCGTGATTTTCCTCGACTTGCAATCGGAATTGGAAATCCTCCTGGAACTATGGATTTAAGAGCATTTCTTCTACAGAAATTCAGTTCGGTGGAAAGAAAGCAGATTGATGAGTCATTGGAGCAGGGAGTTCAAGCTGTTAGGACCTTAGTGCTCAATGGGTTTAACCATCATGTCAATAGATTCAATTTAGGGCAAAAATACAAGTACAATAAAGTTTAA
Protein sequence

>MsG0480023540.01.T01

MDSPLKLLSSNHSSTSKAETHNTLKKMNKMVLRPPTQLSRLNVGFEIIDSLSQSEGILMNTIQSKALIGIGSIGEVPVLLAKPQTYMNFSGESVGPLAAYYRVPLHHILVVYDETSLPNSVLKLQPKGGHGHHNGLKNVIGHLDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQIDESLEQGVQAVRTLVLNGFNHHVNRFNLGQKYKYNKV*