AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023061.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023061.01.T01 MTR_8g085910 97.283 184 5 0 2 185 35 218 1.45e-131 367
MsG0480023061.01.T01 MTR_7g082240 56.180 178 78 0 2 179 74 251 1.89e-69 211
MsG0480023061.01.T01 MTR_8g095500 55.618 178 79 0 2 179 66 243 2.99e-69 211
MsG0480023061.01.T01 MTR_8g103890 53.714 175 81 0 2 176 82 256 1.63e-65 202
MsG0480023061.01.T01 MTR_8g103890 64.348 115 41 0 2 116 82 196 4.51e-49 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023061.01.T01 AT5G19830 72.928 181 49 0 2 182 36 216 1.87e-92 269
MsG0480023061.01.T01 AT1G18440 50.000 176 88 0 2 177 112 287 1.50e-63 197
MsG0480023061.01.T01 AT5G16140 53.933 178 82 0 2 179 63 240 1.80e-63 196
MsG0480023061.01.T01 AT5G16140 53.933 178 82 0 2 179 63 240 1.80e-63 196
MsG0480023061.01.T01 AT5G38290 53.933 178 82 0 2 179 73 250 2.66e-63 196
MsG0480023061.01.T01 AT5G38290 53.933 178 82 0 2 179 69 246 3.00e-63 196
MsG0480023061.01.T01 AT1G18440 59.770 87 35 0 2 88 112 198 8.34e-33 117

Find 60 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAGCTTCTTCTATTTAA+AGG 0.160898 4:-80311493 MsG0480023061.01.T01:CDS
TTACCACAAGCACCTGATTA+AGG 0.270638 4:+80315386 None:intergenic
GGCAAGTCGTGTTATAAGTA+TGG 0.331377 4:-80311380 MsG0480023061.01.T01:three_prime_UTR
TTACAAGTTACCCCTTAATC+AGG 0.359613 4:-80315398 MsG0480023061.01.T01:CDS
GTTTGGTAGTGAGTGCAAAA+AGG 0.363808 4:-80311471 MsG0480023061.01.T01:CDS
AGTTTGGTAGGATTCGATTA+TGG 0.365540 4:-80311401 MsG0480023061.01.T01:exon
GAATTTCCTCGTCTAAGAAT+TGG 0.379292 4:-80312112 MsG0480023061.01.T01:intron
TTTAAATAGAAGAAGCTTCA+AGG 0.387124 4:+80311495 None:intergenic
TGAGGCTTTGCAAGGAAAAC+GGG 0.410154 4:+80317135 None:intergenic
GCTTCTTCTATTTAAAGGTT+TGG 0.412204 4:-80311488 MsG0480023061.01.T01:CDS
CTGAGATTCATATAAGTTTG+AGG 0.413922 4:+80317117 None:intergenic
ATATAATGGTGTACCCTTTG+TGG 0.418031 4:+80315208 None:intergenic
TTGAGGCTTTGCAAGGAAAA+CGG 0.428515 4:+80317134 None:intergenic
TTAAGGTTTCATAGATTGCC+TGG 0.435165 4:-80311344 MsG0480023061.01.T01:three_prime_UTR
TGGGAAGCCTCCTGGACAAA+TGG 0.438531 4:-80311994 MsG0480023061.01.T01:CDS
TACCACAAGCACCTGATTAA+GGG 0.444523 4:+80315387 None:intergenic
AAGTGCAGACATTACCAGTT+TGG 0.444811 4:-80311417 MsG0480023061.01.T01:CDS
ACAGGGATTGGGAAGCCTCC+TGG 0.466135 4:-80312002 MsG0480023061.01.T01:intron
ATAATCGAATCCTACCAAAC+TGG 0.489126 4:+80311403 None:intergenic
TGCTTCGTCTTAATGACAAA+GGG 0.493860 4:-80315242 MsG0480023061.01.T01:CDS
GCTTTAGGATCCATTTGTCC+AGG 0.507125 4:+80311984 None:intergenic
GTACTGAGAGCAAGCTGGTA+GGG 0.520903 4:-80311179 MsG0480023061.01.T01:three_prime_UTR
ATCTATGAAACCTTAAAATG+AGG 0.526449 4:+80311351 None:intergenic
GCAGACATTACCAGTTTGGT+AGG 0.529698 4:-80311413 MsG0480023061.01.T01:exon
CAAAATAAAACAAGTCAAGA+TGG 0.535355 4:+80311219 None:intergenic
TATAAGTTTGAGGCTTTGCA+AGG 0.536193 4:+80317127 None:intergenic
TTTACTATAGGCAGGACCAC+TGG 0.548061 4:-80315428 MsG0480023061.01.T01:intron
GACGAAGCACCCCACATGGC+AGG 0.549108 4:+80315256 None:intergenic
TGAGAGCAAGCTGGTAGGGT+GGG 0.555466 4:-80311175 MsG0480023061.01.T01:three_prime_UTR
ACCCCTTAATCAGGTGCTTG+TGG 0.558666 4:-80315389 MsG0480023061.01.T01:intron
TAAGGTTTCATAGATTGCCT+GGG 0.577186 4:-80311343 MsG0480023061.01.T01:three_prime_UTR
GGGGTCATGGAAGCCACAAA+GGG 0.578213 4:-80315221 MsG0480023061.01.T01:intron
GATGCATTTGCTGAGTCACA+AGG 0.578919 4:-80317292 MsG0480023061.01.T01:CDS
CTGAGAGCAAGCTGGTAGGG+TGG 0.580394 4:-80311176 MsG0480023061.01.T01:three_prime_UTR
TTAGGATCCATTTGTCCAGG+AGG 0.588942 4:+80311987 None:intergenic
ATGATATGAACCTGCCATGT+GGG 0.592556 4:-80315266 MsG0480023061.01.T01:CDS
TTGACGAGGCTTTGCACGAG+GGG 0.595008 4:-80311525 MsG0480023061.01.T01:CDS
ATATTGATGTATAAAACGTA+AGG 0.597574 4:-80311317 MsG0480023061.01.T01:three_prime_UTR
TTTGCAATGAACTGTATCCA+TGG 0.598839 4:+80317264 None:intergenic
ACCACAAGCACCTGATTAAG+GGG 0.601653 4:+80315388 None:intergenic
ATGGCAGGTTCATATCATCA+TGG 0.602883 4:+80315271 None:intergenic
GATTGACGAGGCTTTGCACG+AGG 0.603038 4:-80311527 MsG0480023061.01.T01:CDS
TGTACTGAGAGCAAGCTGGT+AGG 0.614240 4:-80311180 MsG0480023061.01.T01:three_prime_UTR
AGCTATATTAATATACACGA+TGG 0.621783 4:+80311267 None:intergenic
GTGCTTCGTCTTAATGACAA+AGG 0.624708 4:-80315243 MsG0480023061.01.T01:CDS
ATGCATTTGCTGAGTCACAA+GGG 0.647645 4:-80317291 MsG0480023061.01.T01:CDS
TGACGAGGCTTTGCACGAGG+GGG 0.650076 4:-80311524 MsG0480023061.01.T01:CDS
TTAAGACGAAGCACCCCACA+TGG 0.652687 4:+80315252 None:intergenic
TACTAACCAATTCTTAGACG+AGG 0.656829 4:+80312106 None:intergenic
TCTTGTTGGACAGATTGACG+AGG 0.661063 4:-80311539 MsG0480023061.01.T01:intron
AACTTGTAATAAGCAGCCAG+TGG 0.676299 4:+80315412 None:intergenic
ATTGACGAGGCTTTGCACGA+GGG 0.680803 4:-80311526 MsG0480023061.01.T01:CDS
GTAATGTACTGAGAGCAAGC+TGG 0.695353 4:-80311184 MsG0480023061.01.T01:three_prime_UTR
TGAGTCACAAGGGATTGCCA+TGG 0.696153 4:-80317281 MsG0480023061.01.T01:CDS
GCTTCGTCTTAATGACAAAG+GGG 0.699742 4:-80315241 MsG0480023061.01.T01:CDS
CTTCGTCTTAATGACAAAGG+GGG 0.701059 4:-80315240 MsG0480023061.01.T01:CDS
TTATACATCAATATGCACCC+AGG 0.708635 4:+80311326 None:intergenic
TGATATGAACCTGCCATGTG+GGG 0.716207 4:-80315265 MsG0480023061.01.T01:CDS
CAAACTTATATGAATCTCAG+TGG 0.724547 4:-80317114 MsG0480023061.01.T01:CDS
GATGATATGAACCTGCCATG+TGG 0.757788 4:-80315267 MsG0480023061.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATGC+AGG + Chr4:80313329-80313348 None:intergenic 10.0%
!! TTAATAAATTAAGGATAAAA+GGG - Chr4:80314304-80314323 MsG0480023061.01.T01:intron 10.0%
!! TTTAATAAATTAAGGATAAA+AGG - Chr4:80314303-80314322 MsG0480023061.01.T01:intron 10.0%
!!! AGTTTTTTAATTTTATTTTC+TGG - Chr4:80315944-80315963 MsG0480023061.01.T01:intron 10.0%
!!! TTCATTCAATATATTTTTTA+TGG - Chr4:80313167-80313186 MsG0480023061.01.T01:intron 10.0%
!! AAATTAATAATTGAATCTGA+GGG - Chr4:80311480-80311499 MsG0480023061.01.T01:CDS 15.0%
!! AAGATTATTAATTTAAAGAC+TGG - Chr4:80312445-80312464 MsG0480023061.01.T01:intron 15.0%
!! AATTATTGTAAAACATTTAC+AGG - Chr4:80314088-80314107 MsG0480023061.01.T01:intron 15.0%
!! ATATATATAAATTATCACAC+TGG - Chr4:80313341-80313360 MsG0480023061.01.T01:intron 15.0%
!! ATTAGTCAATTATCATATAA+TGG + Chr4:80313278-80313297 None:intergenic 15.0%
!! ATTATTGTAAAACATTTACA+GGG - Chr4:80314089-80314108 MsG0480023061.01.T01:intron 15.0%
!! GAATTCATTTCATTATATAT+TGG - Chr4:80311451-80311470 MsG0480023061.01.T01:CDS 15.0%
!! GATTCAATAATATTGTTTAT+GGG - Chr4:80316179-80316198 MsG0480023061.01.T01:intron 15.0%
!! TGATTCAATAATATTGTTTA+TGG - Chr4:80316178-80316197 MsG0480023061.01.T01:intron 15.0%
!!! ATTTTGAAAAAACATTTGTT+GGG + Chr4:80313463-80313482 None:intergenic 15.0%
!!! GTATTTTTGGTTTTTTTTAA+GGG + Chr4:80314267-80314286 None:intergenic 15.0%
!!! TTAGTTATTTATTCTTTTGA+AGG + Chr4:80312531-80312550 None:intergenic 15.0%
!! AATAACTAAATAAAAGAACC+TGG - Chr4:80312542-80312561 MsG0480023061.01.T01:intron 20.0%
!! AATTAATAATTGAATCTGAG+GGG - Chr4:80311481-80311500 MsG0480023061.01.T01:CDS 20.0%
!! AATTAGAAAGTTAAAAGAGA+AGG + Chr4:80313128-80313147 None:intergenic 20.0%
!! ACAATTGCCTAAAATAATTA+AGG + Chr4:80312754-80312773 None:intergenic 20.0%
!! AGAATTATCTGTGTATTTAT+TGG - Chr4:80313658-80313677 MsG0480023061.01.T01:intron 20.0%
!! ATATAATGAAATGAATTCAC+AGG + Chr4:80311449-80311468 None:intergenic 20.0%
!! ATATTGATGTATAAAACGTA+AGG - Chr4:80317152-80317171 MsG0480023061.01.T01:CDS 20.0%
!! ATGAAAGAAAAACATAAAAG+AGG + Chr4:80311264-80311283 None:intergenic 20.0%
!! CAAATTAATAATTGAATCTG+AGG - Chr4:80311479-80311498 MsG0480023061.01.T01:CDS 20.0%
!! GTACAAAAATAAAAGCTAAA+AGG + Chr4:80314186-80314205 None:intergenic 20.0%
!! TGATGAATTTGAAAACATTT+GGG - Chr4:80316725-80316744 MsG0480023061.01.T01:intron 20.0%
!!! AAATGAAGATTTTTGTAACT+TGG + Chr4:80316883-80316902 None:intergenic 20.0%
!!! AATATTGATCTAAAAAGCAT+GGG + Chr4:80316415-80316434 None:intergenic 20.0%
!!! AATTTATTAAGGCGTATTTT+TGG + Chr4:80314280-80314299 None:intergenic 20.0%
!!! ATTTCTCTTATAGTTTTTCT+AGG + Chr4:80311994-80312013 None:intergenic 20.0%
!!! CGTATTTTTGGTTTTTTTTA+AGG + Chr4:80314268-80314287 None:intergenic 20.0%
!!! GATTTTGAAAAAACATTTGT+TGG + Chr4:80313464-80313483 None:intergenic 20.0%
!!! TATTAATATAGCTTTTCAAG+TGG - Chr4:80317212-80317231 MsG0480023061.01.T01:intron 20.0%
!!! TTAATTTTTTGAGTTGAAGT+TGG - Chr4:80316142-80316161 MsG0480023061.01.T01:intron 20.0%
!!! TTATTTTTGTACCAAAACTT+TGG - Chr4:80314194-80314213 MsG0480023061.01.T01:intron 20.0%
!!! TTCTCTTTTAACTTTCTAAT+TGG - Chr4:80313127-80313146 MsG0480023061.01.T01:intron 20.0%
!!! TTTATGATTTTGTAGTTACT+TGG - Chr4:80315822-80315841 MsG0480023061.01.T01:intron 20.0%
!!! TTTTTTAACTTCAGATTTTG+AGG - Chr4:80313995-80314014 MsG0480023061.01.T01:intron 20.0%
! AAAAAAACATGTCAAACGAT+TGG - Chr4:80316674-80316693 MsG0480023061.01.T01:intron 25.0%
! AAAAAACATGTCAAACGATT+GGG - Chr4:80316675-80316694 MsG0480023061.01.T01:intron 25.0%
! AAAAAAGAATAACATCTCAG+AGG + Chr4:80315710-80315729 None:intergenic 25.0%
! AAAAACATGCATATAGATGT+AGG - Chr4:80314438-80314457 MsG0480023061.01.T01:intron 25.0%
! AAAACATGCATATAGATGTA+GGG - Chr4:80314439-80314458 MsG0480023061.01.T01:intron 25.0%
! AAAGCTAAAAGGACAAAATT+AGG + Chr4:80314175-80314194 None:intergenic 25.0%
! AAATCTCATAATATCTCTAG+AGG + Chr4:80313403-80313422 None:intergenic 25.0%
! AACAAGAAAGATAAGAGAAA+AGG + Chr4:80316917-80316936 None:intergenic 25.0%
! AAGCTAAAAGGACAAAATTA+GGG + Chr4:80314174-80314193 None:intergenic 25.0%
! ACATATACTAGTAGAAAAGA+TGG - Chr4:80311867-80311886 MsG0480023061.01.T01:intron 25.0%
! ACTAAATAATACAGACAAGA+AGG + Chr4:80312417-80312436 None:intergenic 25.0%
! AGAAATCAAATTACATGTGT+TGG - Chr4:80313596-80313615 MsG0480023061.01.T01:intron 25.0%
! AGATTTAGAGATTAATGAGT+TGG - Chr4:80312023-80312042 MsG0480023061.01.T01:intron 25.0%
! AGCTATATTAATATACACGA+TGG + Chr4:80317205-80317224 None:intergenic 25.0%
! AGTGCATATATGACAATATA+TGG + Chr4:80316098-80316117 None:intergenic 25.0%
! ATACTACCAACAAAGAAAAA+AGG + Chr4:80314021-80314040 None:intergenic 25.0%
! ATCATAACAAAAGGTAGAAT+TGG + Chr4:80313546-80313565 None:intergenic 25.0%
! ATCTATGAAACCTTAAAATG+AGG + Chr4:80317121-80317140 None:intergenic 25.0%
! ATGATGAATTGACGATTAAA+TGG - Chr4:80315413-80315432 MsG0480023061.01.T01:CDS 25.0%
! CAAAATAAAACAAGTCAAGA+TGG + Chr4:80317253-80317272 None:intergenic 25.0%
! CAATATTGATCTAAAAAGCA+TGG + Chr4:80316416-80316435 None:intergenic 25.0%
! GACAAAAAAATGACTATGTT+GGG - Chr4:80315764-80315783 MsG0480023061.01.T01:intron 25.0%
! GTGATGAATTTGAAAACATT+TGG - Chr4:80316724-80316743 MsG0480023061.01.T01:intron 25.0%
! TTGAAGCTTCTTCTATTTAA+AGG - Chr4:80316976-80316995 MsG0480023061.01.T01:intron 25.0%
! TTTAAATAGAAGAAGCTTCA+AGG + Chr4:80316977-80316996 None:intergenic 25.0%
! TTTACAATAATTCTGCACAA+AGG + Chr4:80314080-80314099 None:intergenic 25.0%
!! ATAATTTTTGTGAGACTGTT+TGG + Chr4:80311781-80311800 None:intergenic 25.0%
!! ATATTGATCTAAAAAGCATG+GGG + Chr4:80316414-80316433 None:intergenic 25.0%
!! ATGACTCTTTCTTTTACTAT+AGG - Chr4:80313029-80313048 MsG0480023061.01.T01:intron 25.0%
!! GTGCATTCCTTAATTATTTT+AGG - Chr4:80312744-80312763 MsG0480023061.01.T01:intron 25.0%
!! GTTGAATATTTGTTACTTAC+AGG - Chr4:80311295-80311314 MsG0480023061.01.T01:three_prime_UTR 25.0%
!! TAATTTTTGTGAGACTGTTT+GGG + Chr4:80311780-80311799 None:intergenic 25.0%
!! TATACGTTTTACACGTAAAA+AGG - Chr4:80315260-80315279 MsG0480023061.01.T01:CDS 25.0%
!! TGACACTGATAAATTGTTTT+AGG - Chr4:80314471-80314490 MsG0480023061.01.T01:intron 25.0%
!! TGATCGATTCTTAATTTACT+CGG + Chr4:80312353-80312372 None:intergenic 25.0%
!! TTTTCTCTTATCTTTCTTGT+TGG - Chr4:80316916-80316935 MsG0480023061.01.T01:intron 25.0%
!!! CATCTTGACTTGTTTTATTT+TGG - Chr4:80317251-80317270 MsG0480023061.01.T01:CDS 25.0%
!!! GTTTTTTTTAAGGGTACAAT+AGG + Chr4:80314258-80314277 None:intergenic 25.0%
!!! TTCAATTTGTTTTGTTGACA+GGG - Chr4:80316450-80316469 MsG0480023061.01.T01:intron 25.0%
!!! TTTCAATTTGTTTTGTTGAC+AGG - Chr4:80316449-80316468 MsG0480023061.01.T01:intron 25.0%
!!! TTTTGAAGCAAAAATGCTTT+AGG + Chr4:80316503-80316522 None:intergenic 25.0%
AAAAACACCACAAACTAAAC+TGG + Chr4:80314046-80314065 None:intergenic 30.0%
AAAATATGCTTAGGTGGTTT+GGG - Chr4:80311893-80311912 MsG0480023061.01.T01:intron 30.0%
AAACATGCATATAGATGTAG+GGG - Chr4:80314440-80314459 MsG0480023061.01.T01:intron 30.0%
AAATTAAGAATCGATCAGAG+AGG - Chr4:80312356-80312375 MsG0480023061.01.T01:intron 30.0%
AATATAAGCAATCAGACATG+AGG + Chr4:80312808-80312827 None:intergenic 30.0%
AGTAAGTCACCAAGAATAAA+GGG - Chr4:80314701-80314720 MsG0480023061.01.T01:intron 30.0%
AGTGTAACTAAGGTTTCAAT+TGG - Chr4:80316592-80316611 MsG0480023061.01.T01:intron 30.0%
AGTTACACTAGAGTAACAAA+AGG + Chr4:80316581-80316600 None:intergenic 30.0%
ATAAATAACACTCTTTAGCC+TGG + Chr4:80316319-80316338 None:intergenic 30.0%
ATATAAGCAATCAGACATGA+GGG + Chr4:80312807-80312826 None:intergenic 30.0%
ATTACAGTTACCATGACATA+GGG + Chr4:80311841-80311860 None:intergenic 30.0%
ATTGCTTGAGTACCAAAATA+TGG + Chr4:80315184-80315203 None:intergenic 30.0%
CAAACTTATATGAATCTCAG+TGG - Chr4:80311355-80311374 MsG0480023061.01.T01:three_prime_UTR 30.0%
CGACAAAAAAATGACTATGT+TGG - Chr4:80315763-80315782 MsG0480023061.01.T01:intron 30.0%
CTGAGATTCATATAAGTTTG+AGG + Chr4:80311355-80311374 None:intergenic 30.0%
GCTTCTTCTATTTAAAGGTT+TGG - Chr4:80316981-80317000 MsG0480023061.01.T01:intron 30.0%
GTGTAACTAAGGTTTCAATT+GGG - Chr4:80316593-80316612 MsG0480023061.01.T01:intron 30.0%
TACTACATACCATGCATTAT+TGG - Chr4:80311569-80311588 MsG0480023061.01.T01:intron 30.0%
TAGCCTTTGCATTTGTATAT+TGG - Chr4:80313623-80313642 MsG0480023061.01.T01:intron 30.0%
TATACTAGTAGAAAAGATGG+TGG - Chr4:80311870-80311889 MsG0480023061.01.T01:intron 30.0%
TATTACAGTTACCATGACAT+AGG + Chr4:80311842-80311861 None:intergenic 30.0%
TGAAGTCATGTAGATGTTAT+TGG - Chr4:80313489-80313508 MsG0480023061.01.T01:intron 30.0%
TGAATATTATCTACTAGAGC+AGG - Chr4:80315344-80315363 MsG0480023061.01.T01:intron 30.0%
TTAAAAGCTAGCTATTAAGG+TGG + Chr4:80315035-80315054 None:intergenic 30.0%
TTACCAAGATAAATTGATCC+CGG + Chr4:80315494-80315513 None:intergenic 30.0%
TTATCATCAAATAGGGATGA+AGG - Chr4:80314900-80314919 MsG0480023061.01.T01:intron 30.0%
TTGAAAACATTTGGGCAAAT+GGG - Chr4:80316733-80316752 MsG0480023061.01.T01:intron 30.0%
TTGCCAATATACAAATGCAA+AGG + Chr4:80313629-80313648 None:intergenic 30.0%
TTGTTACTCTAGTGTAACTA+AGG - Chr4:80316582-80316601 MsG0480023061.01.T01:intron 30.0%
TTTGAAAACATTTGGGCAAA+TGG - Chr4:80316732-80316751 MsG0480023061.01.T01:intron 30.0%
! ACCGACTATTTACAAGTTTT+GGG + Chr4:80315577-80315596 None:intergenic 30.0%
! ATATGCACTGCACTATTTTA+GGG - Chr4:80316109-80316128 MsG0480023061.01.T01:intron 30.0%
! ATTTGGAGTTGTTAATGGTA+TGG - Chr4:80314506-80314525 MsG0480023061.01.T01:intron 30.0%
! CATAATTGATAACCAGCATA+AGG + Chr4:80312997-80313016 None:intergenic 30.0%
! CTGTTAGGATTGACTTATTT+GGG + Chr4:80311817-80311836 None:intergenic 30.0%
! TAACGTTAGTTTATCCAAAC+AGG + Chr4:80311646-80311665 None:intergenic 30.0%
! TAATGAGTTGGATTGCAATA+TGG - Chr4:80312035-80312054 MsG0480023061.01.T01:intron 30.0%
! TATATGCACTGCACTATTTT+AGG - Chr4:80316108-80316127 MsG0480023061.01.T01:intron 30.0%
! TCCTAAAAGAACCAAAGTTT+TGG + Chr4:80314208-80314227 None:intergenic 30.0%
! TTTGGAGTTGTTAATGGTAT+GGG - Chr4:80314507-80314526 MsG0480023061.01.T01:intron 30.0%
!! AGTATTTCCAGTTTAGTTTG+TGG - Chr4:80314036-80314055 MsG0480023061.01.T01:intron 30.0%
!! ATGGTTAGTTCCTCATTTTA+AGG - Chr4:80317108-80317127 MsG0480023061.01.T01:CDS 30.0%
!! ATTTTGGTACTCAAGCAATT+TGG - Chr4:80315185-80315204 MsG0480023061.01.T01:intron 30.0%
!! CTTTTGTTATGATGATGATC+CGG - Chr4:80313553-80313572 MsG0480023061.01.T01:intron 30.0%
!! GTTCATTGCAAAGCTATTTT+TGG - Chr4:80311216-80311235 MsG0480023061.01.T01:three_prime_UTR 30.0%
!! TTATCTTGGTAATGTTCCTT+TGG - Chr4:80315502-80315521 MsG0480023061.01.T01:intron 30.0%
!! TTGTTACTTACAGGTTTTGT+TGG - Chr4:80311304-80311323 MsG0480023061.01.T01:three_prime_UTR 30.0%
!!! ACCAAAACTTTGGTTCTTTT+AGG - Chr4:80314204-80314223 MsG0480023061.01.T01:intron 30.0%
!!! ACCTTAATAGCTAGCTTTTA+AGG - Chr4:80315034-80315053 MsG0480023061.01.T01:intron 30.0%
!!! CCTTAATAGCTAGCTTTTAA+GGG - Chr4:80315035-80315054 MsG0480023061.01.T01:intron 30.0%
!!! GTTTAGTTTGTGGTGTTTTT+TGG - Chr4:80314046-80314065 MsG0480023061.01.T01:intron 30.0%
!!! TGCAAAGCTATTTTTGGAAA+AGG - Chr4:80311222-80311241 MsG0480023061.01.T01:three_prime_UTR 30.0%
AAAAGGTCTGGGTTTATGAT+AGG - Chr4:80314929-80314948 MsG0480023061.01.T01:intron 35.0%
AAAGAGCTACTTGACATTAG+TGG + Chr4:80315631-80315650 None:intergenic 35.0%
AAAGGTCTGGGTTTATGATA+GGG - Chr4:80314930-80314949 MsG0480023061.01.T01:intron 35.0%
AAATGACTATGTTGGGCTTA+AGG - Chr4:80315771-80315790 MsG0480023061.01.T01:intron 35.0%
AACATGCATATAGATGTAGG+GGG - Chr4:80314441-80314460 MsG0480023061.01.T01:intron 35.0%
AACGAAATAGAATCAGCTAG+TGG + Chr4:80316825-80316844 None:intergenic 35.0%
AAGTCCCATAATCAGTAGTA+TGG - Chr4:80314974-80314993 MsG0480023061.01.T01:intron 35.0%
AATCTCACCAAGTAAAACCA+TGG - Chr4:80314731-80314750 MsG0480023061.01.T01:intron 35.0%
ACCATACCACAGCAAAAAAA+TGG + Chr4:80312868-80312887 None:intergenic 35.0%
ACGTGTAAAACGTATAAGTC+TGG + Chr4:80315256-80315275 None:intergenic 35.0%
ACTTATTTGGGCTTATCTAC+TGG + Chr4:80311805-80311824 None:intergenic 35.0%
AGAAAATTAGTTACTCCCTC+TGG - Chr4:80314148-80314167 MsG0480023061.01.T01:intron 35.0%
AGGAGTGGTTATCATCAAAT+AGG - Chr4:80314892-80314911 MsG0480023061.01.T01:intron 35.0%
AGGTGACATGGATCAAATTA+TGG + Chr4:80312078-80312097 None:intergenic 35.0%
AGTCATAGACTACTGCATAT+GGG + Chr4:80315110-80315129 None:intergenic 35.0%
AGTCCCATAATCAGTAGTAT+GGG - Chr4:80314975-80314994 MsG0480023061.01.T01:intron 35.0%
AGTGTTTGATTCCAACGAAA+TGG - Chr4:80312225-80312244 MsG0480023061.01.T01:intron 35.0%
AGTTCACTTGGCAAATATCA+TGG - Chr4:80316623-80316642 MsG0480023061.01.T01:intron 35.0%
AGTTCCAATAAGCATTTGGA+TGG + Chr4:80314658-80314677 None:intergenic 35.0%
AGTTGATTAGAATTGTTGCG+AGG - Chr4:80311538-80311557 MsG0480023061.01.T01:intron 35.0%
AGTTTGGTAGGATTCGATTA+TGG - Chr4:80317068-80317087 MsG0480023061.01.T01:intron 35.0%
ATAATCGAATCCTACCAAAC+TGG + Chr4:80317069-80317088 None:intergenic 35.0%
ATATAATGGTGTACCCTTTG+TGG + Chr4:80313264-80313283 None:intergenic 35.0%
ATGCAACTTCCAATAATGCA+TGG + Chr4:80311581-80311600 None:intergenic 35.0%
ATTTCACTACGCATATAGAG+TGG - Chr4:80312200-80312219 MsG0480023061.01.T01:intron 35.0%
ATTTGTCATACCTATTGGGA+AGG + Chr4:80314799-80314818 None:intergenic 35.0%
CAAAACTTGTAAATAGTCGG+TGG - Chr4:80315576-80315595 MsG0480023061.01.T01:intron 35.0%
CAAACAGCTAACATGTCTTA+TGG + Chr4:80315865-80315884 None:intergenic 35.0%
CAGGATTTGTCATACCTATT+GGG + Chr4:80314803-80314822 None:intergenic 35.0%
CATCTATCTAAGTAGCTAAC+TGG + Chr4:80315448-80315467 None:intergenic 35.0%
CATTAACAACTCCAAATGTC+AGG + Chr4:80314503-80314522 None:intergenic 35.0%
CATTTAGAAGACCATTTCGT+TGG + Chr4:80312239-80312258 None:intergenic 35.0%
CCAAATAAGTCAATCCTAAC+AGG - Chr4:80311815-80311834 MsG0480023061.01.T01:intron 35.0%
CCCTTAAAAGCTAGCTATTA+AGG + Chr4:80315038-80315057 None:intergenic 35.0%
CGGATCATCATCATAACAAA+AGG + Chr4:80313555-80313574 None:intergenic 35.0%
CGGTAGATATTACTATGATC+CGG - Chr4:80315472-80315491 MsG0480023061.01.T01:intron 35.0%
CGTGTAAAACGTATAAGTCT+GGG + Chr4:80315255-80315274 None:intergenic 35.0%
GAAAATATGCTTAGGTGGTT+TGG - Chr4:80311892-80311911 MsG0480023061.01.T01:intron 35.0%
GAATTTCCTCGTCTAAGAAT+TGG - Chr4:80316357-80316376 MsG0480023061.01.T01:intron 35.0%
GAGTAAGTCACCAAGAATAA+AGG - Chr4:80314700-80314719 MsG0480023061.01.T01:intron 35.0%
GATAGGGATTTGGGTATTAT+GGG - Chr4:80314946-80314965 MsG0480023061.01.T01:intron 35.0%
GCCCAAAACTTGTAAATAGT+CGG - Chr4:80315573-80315592 MsG0480023061.01.T01:intron 35.0%
GCCTGTCAAAATTTAGGTAT+TGG + Chr4:80314584-80314603 None:intergenic 35.0%
GCTACTTAGATAGATGTCTT+CGG - Chr4:80315452-80315471 MsG0480023061.01.T01:intron 35.0%
GGAAGAAAATCTAGTAAACC+AGG + Chr4:80312563-80312582 None:intergenic 35.0%
GGAGTGGTTATCATCAAATA+GGG - Chr4:80314893-80314912 MsG0480023061.01.T01:intron 35.0%
GGTAGATATTACTATGATCC+GGG - Chr4:80315473-80315492 MsG0480023061.01.T01:intron 35.0%
GTAAAAAGGCAGAAGGAAAT+GGG - Chr4:80315274-80315293 MsG0480023061.01.T01:CDS 35.0%
GTAGAATTGGATTTCAGAAG+TGG + Chr4:80313533-80313552 None:intergenic 35.0%
GTTGTGATGAAGAAAGGAAA+AGG + Chr4:80314544-80314563 None:intergenic 35.0%
TAAGACATGTTAGCTGTTTG+TGG - Chr4:80315865-80315884 MsG0480023061.01.T01:intron 35.0%
TAAGGTTTCATAGATTGCCT+GGG - Chr4:80317126-80317145 MsG0480023061.01.T01:CDS 35.0%
TAAGTGAGAATGACTGCTAA+AGG - Chr4:80312158-80312177 MsG0480023061.01.T01:intron 35.0%
TAATAATTGAATCTGAGGGG+CGG - Chr4:80311484-80311503 MsG0480023061.01.T01:CDS 35.0%
TACTAACCAATTCTTAGACG+AGG + Chr4:80316366-80316385 None:intergenic 35.0%
TAGTCATAGACTACTGCATA+TGG + Chr4:80315111-80315130 None:intergenic 35.0%
TATGAAGTCCTTCATATGTG+CGG + Chr4:80312584-80312603 None:intergenic 35.0%
TCACAGTTCCAATAAGCATT+TGG + Chr4:80314662-80314681 None:intergenic 35.0%
TCACTAAACATATGCAGTTC+AGG + Chr4:80314822-80314841 None:intergenic 35.0%
TCAGGATTTGTCATACCTAT+TGG + Chr4:80314804-80314823 None:intergenic 35.0%
TCGAAAGTTTGCGAGATTAT+GGG - Chr4:80311620-80311639 MsG0480023061.01.T01:intron 35.0%
TCTTGACGAGGATTTATTTG+CGG + Chr4:80315735-80315754 None:intergenic 35.0%
TGATAGGGATTTGGGTATTA+TGG - Chr4:80314945-80314964 MsG0480023061.01.T01:intron 35.0%
TGATCTATTCTCCTTACTAC+AGG + Chr4:80311934-80311953 None:intergenic 35.0%
TGATGTAACATGTTGGTCAA+TGG - Chr4:80313878-80313897 MsG0480023061.01.T01:intron 35.0%
TGCTTCGTCTTAATGACAAA+GGG - Chr4:80313227-80313246 MsG0480023061.01.T01:intron 35.0%
TGGGTTTATGATAGGGATTT+GGG - Chr4:80314937-80314956 MsG0480023061.01.T01:intron 35.0%
TGTTCGAGAAAATTTCACGT+TGG + Chr4:80316780-80316799 None:intergenic 35.0%
TTAAGGTTTCATAGATTGCC+TGG - Chr4:80317125-80317144 MsG0480023061.01.T01:CDS 35.0%
TTACAAGTTACCCCTTAATC+AGG - Chr4:80313071-80313090 MsG0480023061.01.T01:intron 35.0%
TTATACATCAATATGCACCC+AGG + Chr4:80317146-80317165 None:intergenic 35.0%
TTTACACGTAAAAAGGCAGA+AGG - Chr4:80315267-80315286 MsG0480023061.01.T01:CDS 35.0%
TTTGCAATGAACTGTATCCA+TGG + Chr4:80311208-80311227 None:intergenic 35.0%
! AAATGTGAGTGTTTGCCTTT+TGG + Chr4:80314776-80314795 None:intergenic 35.0%
! ACGTTTTTGCATGTAGAAAG+TGG + Chr4:80311421-80311440 None:intergenic 35.0%
! ATTTTCTTCCGCACATATGA+AGG - Chr4:80312573-80312592 MsG0480023061.01.T01:intron 35.0%
! CATCCCATACTACTGATTAT+GGG + Chr4:80314981-80315000 None:intergenic 35.0%
! CCTGTTAGGATTGACTTATT+TGG + Chr4:80311818-80311837 None:intergenic 35.0%
! CTCTTTCTTTTACTATAGGC+AGG - Chr4:80313033-80313052 MsG0480023061.01.T01:intron 35.0%
! CTGACATTTGGAGTTGTTAA+TGG - Chr4:80314501-80314520 MsG0480023061.01.T01:intron 35.0%
! CTTGTACTGATGTAACATGT+TGG - Chr4:80313871-80313890 MsG0480023061.01.T01:intron 35.0%
! GGATATTTTCCTATTGGATC+TGG - Chr4:80315305-80315324 MsG0480023061.01.T01:intron 35.0%
! GGATGAGGATATTTTCCTAT+TGG - Chr4:80315299-80315318 MsG0480023061.01.T01:intron 35.0%
! GTCAATGGTCATACATTTTG+TGG - Chr4:80313893-80313912 MsG0480023061.01.T01:intron 35.0%
! TATAAGTTTGAGGCTTTGCA+AGG + Chr4:80311345-80311364 None:intergenic 35.0%
! TCTGACATCATTCGATTTTC+TGG - Chr4:80312720-80312739 MsG0480023061.01.T01:intron 35.0%
! TTTAGCCTTCCCTTTATTCT+TGG + Chr4:80314713-80314732 None:intergenic 35.0%
! TTTTCCTATTGGATCTGGAA+TGG - Chr4:80315310-80315329 MsG0480023061.01.T01:intron 35.0%
!! ACAAAAGGTGCATTTTCAAC+AGG + Chr4:80316566-80316585 None:intergenic 35.0%
!! AGATGGTGGAAAATATGCTT+AGG - Chr4:80311884-80311903 MsG0480023061.01.T01:intron 35.0%
!! AGGATTTTGTTTGCCAATCT+AGG - Chr4:80312376-80312395 MsG0480023061.01.T01:intron 35.0%
!! CACCGACTATTTACAAGTTT+TGG + Chr4:80315578-80315597 None:intergenic 35.0%
!! GCCAATACCTAAATTTTGAC+AGG - Chr4:80314580-80314599 MsG0480023061.01.T01:intron 35.0%
!! GGATTTTGTTTGCCAATCTA+GGG - Chr4:80312377-80312396 MsG0480023061.01.T01:intron 35.0%
!! GTCAGAAGAAGCATTCAAAA+TGG + Chr4:80312706-80312725 None:intergenic 35.0%
!! TATGCACTGCACTATTTTAG+GGG - Chr4:80316110-80316129 MsG0480023061.01.T01:intron 35.0%
!! TTGTTAGCCATGGTTTTACT+TGG + Chr4:80314741-80314760 None:intergenic 35.0%
!! TTGTTTTGTTGACAGGGATT+GGG - Chr4:80316456-80316475 MsG0480023061.01.T01:intron 35.0%
!! TTTAGGTATTGGCATACAAC+TGG + Chr4:80314573-80314592 None:intergenic 35.0%
!!! AATAGCTAGCTTTTAAGGGT+GGG - Chr4:80315039-80315058 MsG0480023061.01.T01:intron 35.0%
!!! ACTATTTACAAGTTTTGGGC+AGG + Chr4:80315573-80315592 None:intergenic 35.0%
!!! CTGATAAATTGTTTTAGGCC+TGG - Chr4:80314476-80314495 MsG0480023061.01.T01:intron 35.0%
!!! TAATAGCTAGCTTTTAAGGG+TGG - Chr4:80315038-80315057 MsG0480023061.01.T01:intron 35.0%
!!! TTGAGGCCTTTTTTCTTTGT+TGG - Chr4:80314012-80314031 MsG0480023061.01.T01:intron 35.0%
!!! TTTGTTTTGTTGACAGGGAT+TGG - Chr4:80316455-80316474 MsG0480023061.01.T01:intron 35.0%
!!! TTTTTGAAGCAGTACACAAC+TGG - Chr4:80312930-80312949 MsG0480023061.01.T01:intron 35.0%
AAACATGTCAAACGATTGGG+TGG - Chr4:80316678-80316697 MsG0480023061.01.T01:intron 40.0%
AAATAGAATCAGCTAGTGGC+TGG + Chr4:80316821-80316840 None:intergenic 40.0%
AACTTGTAATAAGCAGCCAG+TGG + Chr4:80313060-80313079 None:intergenic 40.0%
AAGTGCAGACATTACCAGTT+TGG - Chr4:80317052-80317071 MsG0480023061.01.T01:intron 40.0%
AAGTTGCTGAGCAGAATCAA+AGG + Chr4:80313956-80313975 None:intergenic 40.0%
AATAATTGAATCTGAGGGGC+GGG - Chr4:80311485-80311504 MsG0480023061.01.T01:CDS 40.0%
AATCAGTAGTATGGGATGCT+TGG - Chr4:80314983-80315002 MsG0480023061.01.T01:intron 40.0%
ACATCAAGCTACATCCACTA+TGG - Chr4:80316850-80316869 MsG0480023061.01.T01:intron 40.0%
ACCTTGTAGGACCAAAGATT+AGG - Chr4:80314372-80314391 MsG0480023061.01.T01:intron 40.0%
ACTCACATTTCCTTCCCAAT+AGG - Chr4:80314786-80314805 MsG0480023061.01.T01:intron 40.0%
ACTTGGAGTCTTGAACTTGA+TGG - Chr4:80315839-80315858 MsG0480023061.01.T01:intron 40.0%
AGCAGTCATTCTCACTTACA+AGG + Chr4:80312156-80312175 None:intergenic 40.0%
AGTAAGGAGAATAGATCAGC+TGG - Chr4:80311936-80311955 MsG0480023061.01.T01:intron 40.0%
AGTCACCAAGAATAAAGGGA+AGG - Chr4:80314705-80314724 MsG0480023061.01.T01:intron 40.0%
ATCTCAGTGGTGAATCAGTA+AGG - Chr4:80311368-80311387 MsG0480023061.01.T01:three_prime_UTR 40.0%
ATCTTTGGTCCTACAAGGTT+TGG + Chr4:80314371-80314390 None:intergenic 40.0%
ATGATATGAACCTGCCATGT+GGG - Chr4:80313203-80313222 MsG0480023061.01.T01:intron 40.0%
ATGGCAGGTTCATATCATCA+TGG + Chr4:80313201-80313220 None:intergenic 40.0%
CAAGAGTAGAGTACAATGAG+TGG + Chr4:80316284-80316303 None:intergenic 40.0%
CAAGCAGAAATGTTAGATGG+TGG + Chr4:80316067-80316086 None:intergenic 40.0%
CAATGCCATAAGAAGCCAAA+AGG - Chr4:80314758-80314777 MsG0480023061.01.T01:intron 40.0%
CCTTGTAGGACCAAAGATTA+GGG - Chr4:80314373-80314392 MsG0480023061.01.T01:intron 40.0%
CGACAAGCAGAAATGTTAGA+TGG + Chr4:80316070-80316089 None:intergenic 40.0%
CGTAAAAAGGCAGAAGGAAA+TGG - Chr4:80315273-80315292 MsG0480023061.01.T01:CDS 40.0%
CTAACATTTCTGCTTGTCGA+GGG - Chr4:80316071-80316090 MsG0480023061.01.T01:intron 40.0%
CTGGGTTTATGATAGGGATT+TGG - Chr4:80314936-80314955 MsG0480023061.01.T01:intron 40.0%
CTGTGTATTTATTGGAGTCC+TGG - Chr4:80313666-80313685 MsG0480023061.01.T01:intron 40.0%
CTTCGTCTTAATGACAAAGG+GGG - Chr4:80313229-80313248 MsG0480023061.01.T01:intron 40.0%
CTTGACGAGGATTTATTTGC+GGG + Chr4:80315734-80315753 None:intergenic 40.0%
GAATGACTGCTAAAGGAATG+AGG - Chr4:80312165-80312184 MsG0480023061.01.T01:intron 40.0%
GAGGATAGTCATATCACTAG+AGG - Chr4:80311958-80311977 MsG0480023061.01.T01:CDS 40.0%
GATAAGTACGCAAGCACTTA+GGG + Chr4:80315067-80315086 None:intergenic 40.0%
GATCCGGGATCAATTTATCT+TGG - Chr4:80315488-80315507 MsG0480023061.01.T01:intron 40.0%
GATGCCATCCAAATGCTTAT+TGG - Chr4:80314651-80314670 MsG0480023061.01.T01:intron 40.0%
GCTTCGTCTTAATGACAAAG+GGG - Chr4:80313228-80313247 MsG0480023061.01.T01:intron 40.0%
GGACAAGCCTGTCAAAATTT+AGG + Chr4:80314590-80314609 None:intergenic 40.0%
GGCAAGTCGTGTTATAAGTA+TGG - Chr4:80317089-80317108 MsG0480023061.01.T01:intron 40.0%
GTCATAGACTACTGCATATG+GGG + Chr4:80315109-80315128 None:intergenic 40.0%
GTCGAAAGTTTGCGAGATTA+TGG - Chr4:80311619-80311638 MsG0480023061.01.T01:intron 40.0%
GTGCTTCGTCTTAATGACAA+AGG - Chr4:80313226-80313245 MsG0480023061.01.T01:intron 40.0%
GTTGTTAATGGTATGGGAGT+TGG - Chr4:80314513-80314532 MsG0480023061.01.T01:intron 40.0%
TAACATTTCTGCTTGTCGAG+GGG - Chr4:80316072-80316091 MsG0480023061.01.T01:intron 40.0%
TACCACAAGCACCTGATTAA+GGG + Chr4:80313085-80313104 None:intergenic 40.0%
TAGTGGAGCTTCTCTACTAT+AGG + Chr4:80315614-80315633 None:intergenic 40.0%
TCAAAAACTGAAACCTCGCA+TGG + Chr4:80312917-80312936 None:intergenic 40.0%
TCACTTGGCAAATATCATGG+TGG - Chr4:80316626-80316645 MsG0480023061.01.T01:intron 40.0%
TCATCAAATAGGGATGAAGG+TGG - Chr4:80314903-80314922 MsG0480023061.01.T01:intron 40.0%
TCTAACATTTCTGCTTGTCG+AGG - Chr4:80316070-80316089 MsG0480023061.01.T01:intron 40.0%
TCTTATGGCATTGTTAGCCA+TGG + Chr4:80314751-80314770 None:intergenic 40.0%
TGATAAGTACGCAAGCACTT+AGG + Chr4:80315068-80315087 None:intergenic 40.0%
TGGTGACTTACTCGAATAGA+GGG + Chr4:80314693-80314712 None:intergenic 40.0%
TGGTGGAAAATATGCTTAGG+TGG - Chr4:80311887-80311906 MsG0480023061.01.T01:intron 40.0%
TTACATAAACCAATGCCTCG+TGG + Chr4:80312489-80312508 None:intergenic 40.0%
TTACCACAAGCACCTGATTA+AGG + Chr4:80313086-80313105 None:intergenic 40.0%
TTATGTTCGCCTGCCTAATA+TGG + Chr4:80314869-80314888 None:intergenic 40.0%
TTGAGGCTTTGCAAGGAAAA+CGG + Chr4:80311338-80311357 None:intergenic 40.0%
TTGGGTTCTCATAGTTCACT+TGG - Chr4:80316611-80316630 MsG0480023061.01.T01:intron 40.0%
! ATGCATTTGCTGAGTCACAA+GGG - Chr4:80311178-80311197 MsG0480023061.01.T01:three_prime_UTR 40.0%
! CCTGGTTTGTGTTGCATTAA+GGG - Chr4:80313684-80313703 MsG0480023061.01.T01:intron 40.0%
! GCATCCCATACTACTGATTA+TGG + Chr4:80314982-80315001 None:intergenic 40.0%
! GTCAGATATCTAGAATGTCG+AGG - Chr4:80315379-80315398 MsG0480023061.01.T01:intron 40.0%
! TATCTAGAATGTCGAGGACT+TGG - Chr4:80315385-80315404 MsG0480023061.01.T01:intron 40.0%
! TCCTGGTTTGTGTTGCATTA+AGG - Chr4:80313683-80313702 MsG0480023061.01.T01:intron 40.0%
! TCTGGGTGTTTTCTAGATTG+TGG + Chr4:80315238-80315257 None:intergenic 40.0%
! TTGGTGACTTACTCGAATAG+AGG + Chr4:80314694-80314713 None:intergenic 40.0%
!! ACTGCACTATTTTAGGGGAA+AGG - Chr4:80316115-80316134 MsG0480023061.01.T01:intron 40.0%
!! CTCTTGCTTTTCAATGATCC+AGG - Chr4:80316298-80316317 MsG0480023061.01.T01:intron 40.0%
!! GTTTGGTAGTGAGTGCAAAA+AGG - Chr4:80316998-80317017 MsG0480023061.01.T01:intron 40.0%
!! TCTTGGTAATGTTCCTTTGG+AGG - Chr4:80315505-80315524 MsG0480023061.01.T01:intron 40.0%
!!! GAAGTGCCATTTTTTTGCTG+TGG - Chr4:80312859-80312878 MsG0480023061.01.T01:intron 40.0%
!!! GCCATTTTTTTGCTGTGGTA+TGG - Chr4:80312864-80312883 MsG0480023061.01.T01:intron 40.0%
!!! GGCTGGTGCTATTTTCATTT+TGG + Chr4:80316804-80316823 None:intergenic 40.0%
!!! GTTTGCCTTTTGGCTTCTTA+TGG + Chr4:80314766-80314785 None:intergenic 40.0%
AAACCTGTTCCCACTAAGTG+GGG - Chr4:80312301-80312320 MsG0480023061.01.T01:intron 45.0%
AAGGACAAAATTAGGGCCAG+AGG + Chr4:80314167-80314186 None:intergenic 45.0%
AAGGAGAATAGATCAGCTGG+AGG - Chr4:80311939-80311958 MsG0480023061.01.T01:intron 45.0%
ACAGGCTTGTCCAATTCATC+TGG - Chr4:80314598-80314617 MsG0480023061.01.T01:intron 45.0%
ACCACAAGCACCTGATTAAG+GGG + Chr4:80313084-80313103 None:intergenic 45.0%
ACTGACATCAATTCCATGCG+AGG - Chr4:80312901-80312920 MsG0480023061.01.T01:intron 45.0%
AGGACAAAATTAGGGCCAGA+GGG + Chr4:80314166-80314185 None:intergenic 45.0%
AGGGATGAAGGTGGAGAAAA+AGG - Chr4:80314912-80314931 MsG0480023061.01.T01:intron 45.0%
AGTCATATCACTAGAGGCAG+AGG - Chr4:80311964-80311983 MsG0480023061.01.T01:CDS 45.0%
ATTGCGTGTCCAAACCTTGT+AGG - Chr4:80314359-80314378 MsG0480023061.01.T01:intron 45.0%
CAAACCTGTTCCCACTAAGT+GGG - Chr4:80312300-80312319 MsG0480023061.01.T01:intron 45.0%
CAGGAGGTTGTGATGAAGAA+AGG + Chr4:80314550-80314569 None:intergenic 45.0%
CCCTAATCTTTGGTCCTACA+AGG + Chr4:80314376-80314395 None:intergenic 45.0%
CCCTTAATGCAACACAAACC+AGG + Chr4:80313687-80313706 None:intergenic 45.0%
CCTACCATTCCAGATCCAAT+AGG + Chr4:80315317-80315336 None:intergenic 45.0%
CTAGACAACGAGTAAGCTCT+TGG - Chr4:80316537-80316556 MsG0480023061.01.T01:intron 45.0%
CTTAATGACAAAGGGGGTCA+TGG - Chr4:80313235-80313254 MsG0480023061.01.T01:intron 45.0%
GAAGGTGGAGAAAAAGGTCT+GGG - Chr4:80314918-80314937 MsG0480023061.01.T01:intron 45.0%
GATGATATGAACCTGCCATG+TGG - Chr4:80313202-80313221 MsG0480023061.01.T01:intron 45.0%
GCAGACATTACCAGTTTGGT+AGG - Chr4:80317056-80317075 MsG0480023061.01.T01:intron 45.0%
GCTCGGCAACAGGTTTATTA+CGG + Chr4:80313367-80313386 None:intergenic 45.0%
GTAATGTACTGAGAGCAAGC+TGG - Chr4:80317285-80317304 MsG0480023061.01.T01:CDS 45.0%
GTAGGACCAAAGATTAGGGA+CGG - Chr4:80314377-80314396 MsG0480023061.01.T01:intron 45.0%
TCTTGTTGGACAGATTGACG+AGG - Chr4:80316930-80316949 MsG0480023061.01.T01:intron 45.0%
TGAAGGTGGAGAAAAAGGTC+TGG - Chr4:80314917-80314936 MsG0480023061.01.T01:intron 45.0%
TGAGGCTTTGCAAGGAAAAC+GGG + Chr4:80311337-80311356 None:intergenic 45.0%
TGATATGAACCTGCCATGTG+GGG - Chr4:80313204-80313223 MsG0480023061.01.T01:intron 45.0%
TGGACACAAGGTAGCTGTTA+CGG - Chr4:80315157-80315176 MsG0480023061.01.T01:intron 45.0%
TGGAGAGAAGACCTGTAGTA+AGG - Chr4:80311920-80311939 MsG0480023061.01.T01:intron 45.0%
TGTTATGGGCCATATTAGGC+AGG - Chr4:80314857-80314876 MsG0480023061.01.T01:intron 45.0%
TGTTTAGTGAGCCACAAGTG+AGG - Chr4:80314832-80314851 MsG0480023061.01.T01:intron 45.0%
TTAGGATCCATTTGTCCAGG+AGG + Chr4:80316485-80316504 None:intergenic 45.0%
TTTACTATAGGCAGGACCAC+TGG - Chr4:80313041-80313060 MsG0480023061.01.T01:intron 45.0%
! AACTTGGCTCGTTTCCATAG+TGG + Chr4:80316867-80316886 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr4:80312102-80312121 None:intergenic 45.0%
! ACTCATCTGAAGCCCTAGAT+TGG + Chr4:80312392-80312411 None:intergenic 45.0%
! AGCTGTTACGGGCCATATTT+TGG - Chr4:80315169-80315188 MsG0480023061.01.T01:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr4:80312103-80312122 None:intergenic 45.0%
! CCTATTGGATCTGGAATGGT+AGG - Chr4:80315314-80315333 MsG0480023061.01.T01:intron 45.0%
! CTCTAGAGGAGTATGCACTT+GGG + Chr4:80313389-80313408 None:intergenic 45.0%
! GATGCATTTGCTGAGTCACA+AGG - Chr4:80311177-80311196 MsG0480023061.01.T01:three_prime_UTR 45.0%
! GGAGTGTTATGGGCCATATT+AGG - Chr4:80314853-80314872 MsG0480023061.01.T01:intron 45.0%
! GGGTGTTTTCTAGATTGTGG+TGG + Chr4:80315235-80315254 None:intergenic 45.0%
! GTAATGTTCCTTTGGAGGAG+AGG - Chr4:80315510-80315529 MsG0480023061.01.T01:intron 45.0%
! TCTCTAGAGGAGTATGCACT+TGG + Chr4:80313390-80313409 None:intergenic 45.0%
! TGCTTGGTGGAGTACTTAAG+TGG - Chr4:80314999-80315018 MsG0480023061.01.T01:intron 45.0%
! TGTGTCGATGCCAGATGAAT+TGG + Chr4:80314611-80314630 None:intergenic 45.0%
! TTATGTGCGAAGCCTTATGC+TGG - Chr4:80312982-80313001 MsG0480023061.01.T01:intron 45.0%
! TTCTAGATTGTGGTGGAAGC+TGG + Chr4:80315228-80315247 None:intergenic 45.0%
!! ATTCATCTGGCATCGACACA+AGG - Chr4:80314611-80314630 MsG0480023061.01.T01:intron 45.0%
!! CCACAAGTGAGGAGTGTTAT+GGG - Chr4:80314843-80314862 MsG0480023061.01.T01:intron 45.0%
!! GCTTTAGGATCCATTTGTCC+AGG + Chr4:80316488-80316507 None:intergenic 45.0%
!! TGTTAGATGGTGGATCATGC+TGG + Chr4:80316057-80316076 None:intergenic 45.0%
!! TTATTAAAAGAAATTTATTA+AGG + Chr4:80314291-80314310 None:intergenic 5.0%
!!! AAATTTCTTTTAATAAATTA+AGG - Chr4:80314295-80314314 MsG0480023061.01.T01:intron 5.0%
AAAGGCAGAAGGAAATGGGC+AGG - Chr4:80315278-80315297 MsG0480023061.01.T01:intron 50.0%
ACCATGACATAGGGCCTGTT+AGG + Chr4:80311832-80311851 None:intergenic 50.0%
ACCCCTTAATCAGGTGCTTG+TGG - Chr4:80313080-80313099 MsG0480023061.01.T01:intron 50.0%
ACTAAGTGGGGTAGGTGACA+TGG + Chr4:80312090-80312109 None:intergenic 50.0%
AGAAGGAAATGGGCAGGATG+AGG - Chr4:80315284-80315303 MsG0480023061.01.T01:intron 50.0%
AGGCGAACATAAGTGAGGAG+TGG - Chr4:80314877-80314896 MsG0480023061.01.T01:intron 50.0%
ATCCCCGATGCTTCCATCAT+AGG - Chr4:80315998-80316017 MsG0480023061.01.T01:intron 50.0%
ATCCGGAAGACAGTCTAGGA+AGG - Chr4:80313570-80313589 MsG0480023061.01.T01:intron 50.0%
ATGTCACCTACCCCACTTAG+TGG - Chr4:80312089-80312108 MsG0480023061.01.T01:intron 50.0%
ATTGACGAGGCTTTGCACGA+GGG - Chr4:80316943-80316962 MsG0480023061.01.T01:intron 50.0%
ATTGGCATACAACTGGCAGG+AGG + Chr4:80314566-80314585 None:intergenic 50.0%
CAACTCCAAATGTCAGGACC+AGG + Chr4:80314497-80314516 None:intergenic 50.0%
CACCTTCCTAGACTGTCTTC+CGG + Chr4:80313575-80313594 None:intergenic 50.0%
CAGTAGTATGGGATGCTTGG+TGG - Chr4:80314986-80315005 MsG0480023061.01.T01:intron 50.0%
CCAAACCTGTTCCCACTAAG+TGG - Chr4:80312299-80312318 MsG0480023061.01.T01:intron 50.0%
CCACTTAGTGGGAACAGGTT+TGG + Chr4:80312302-80312321 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr4:80312101-80312120 MsG0480023061.01.T01:intron 50.0%
CCCATAACACTCCTCACTTG+TGG + Chr4:80314846-80314865 None:intergenic 50.0%
CTACCCCACTTAGTGGGATA+AGG - Chr4:80312096-80312115 MsG0480023061.01.T01:intron 50.0%
CTCCTTCCGTCCCTAATCTT+TGG + Chr4:80314386-80314405 None:intergenic 50.0%
CTTAGTGGGATAAGGCTTGG+TGG - Chr4:80312104-80312123 MsG0480023061.01.T01:intron 50.0%
CTTATCCCACTAAGTGGGGT+AGG + Chr4:80312098-80312117 None:intergenic 50.0%
GACCAAAGATTAGGGACGGA+AGG - Chr4:80314381-80314400 MsG0480023061.01.T01:intron 50.0%
GATGATCCGGAAGACAGTCT+AGG - Chr4:80313566-80313585 MsG0480023061.01.T01:intron 50.0%
GATTCAGTTGCCTAGAGCGT+TGG - Chr4:80315663-80315682 MsG0480023061.01.T01:intron 50.0%
GGACACAAGGTAGCTGTTAC+GGG - Chr4:80315158-80315177 MsG0480023061.01.T01:intron 50.0%
GTACTGAGAGCAAGCTGGTA+GGG - Chr4:80317290-80317309 MsG0480023061.01.T01:CDS 50.0%
GTCGTCTAGAAGTCTTGACG+AGG + Chr4:80315747-80315766 None:intergenic 50.0%
TAGGCAGGCGAACATAAGTG+AGG - Chr4:80314872-80314891 MsG0480023061.01.T01:intron 50.0%
TCCTAACAGGCCCTATGTCA+TGG - Chr4:80311828-80311847 MsG0480023061.01.T01:intron 50.0%
TGAGTCACAAGGGATTGCCA+TGG - Chr4:80311188-80311207 MsG0480023061.01.T01:three_prime_UTR 50.0%
TGCGAGATTATGGGCCTGTT+TGG - Chr4:80311629-80311648 MsG0480023061.01.T01:intron 50.0%
TGTACTGAGAGCAAGCTGGT+AGG - Chr4:80317289-80317308 MsG0480023061.01.T01:CDS 50.0%
TGTCACCTACCCCACTTAGT+GGG - Chr4:80312090-80312109 MsG0480023061.01.T01:intron 50.0%
TTAGGCCTGGTCCTGACATT+TGG - Chr4:80314489-80314508 MsG0480023061.01.T01:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr4:80312104-80312123 None:intergenic 50.0%
! GATGGCTTTGCAGCCTATGA+TGG + Chr4:80316014-80316033 None:intergenic 50.0%
! GCAGCCTATGATGGAAGCAT+CGG + Chr4:80316005-80316024 None:intergenic 50.0%
! GGTGGAGTACTTAAGTGGCT+TGG - Chr4:80315004-80315023 MsG0480023061.01.T01:intron 50.0%
! TTAAGACGAAGCACCCCACA+TGG + Chr4:80313220-80313239 None:intergenic 50.0%
!! AGCCTATGATGGAAGCATCG+GGG + Chr4:80316003-80316022 None:intergenic 50.0%
!! CAGCCTATGATGGAAGCATC+GGG + Chr4:80316004-80316023 None:intergenic 50.0%
!! GCCACAAGTGAGGAGTGTTA+TGG - Chr4:80314842-80314861 MsG0480023061.01.T01:intron 50.0%
!! GGTATTGGCATACAACTGGC+AGG + Chr4:80314569-80314588 None:intergenic 50.0%
ACTCCACTCCTCTCCTCCAA+AGG + Chr4:80315521-80315540 None:intergenic 55.0%
CAATGCCTCGTGGCTGTACT+AGG + Chr4:80312479-80312498 None:intergenic 55.0%
CATAGCCGACCCCACTTAGT+GGG + Chr4:80312313-80312332 None:intergenic 55.0%
CTAGTACAGCCACGAGGCAT+TGG - Chr4:80312477-80312496 MsG0480023061.01.T01:intron 55.0%
CTGTTCCCACTAAGTGGGGT+CGG - Chr4:80312305-80312324 MsG0480023061.01.T01:intron 55.0%
GATTGACGAGGCTTTGCACG+AGG - Chr4:80316942-80316961 MsG0480023061.01.T01:intron 55.0%
GCTGGCAGGCAAAAAATCCG+CGG + Chr4:80316039-80316058 None:intergenic 55.0%
GGCAAAAAATCCGCGGCAGA+TGG + Chr4:80316032-80316051 None:intergenic 55.0%
GGGGTCATGGAAGCCACAAA+GGG - Chr4:80313248-80313267 MsG0480023061.01.T01:intron 55.0%
TCATAGCCGACCCCACTTAG+TGG + Chr4:80312314-80312333 None:intergenic 55.0%
TGAGAGCAAGCTGGTAGGGT+GGG - Chr4:80317294-80317313 MsG0480023061.01.T01:CDS 55.0%
TGGGAAGCCTCCTGGACAAA+TGG - Chr4:80316475-80316494 MsG0480023061.01.T01:intron 55.0%
TGTCACCTAGCCAACGCTCT+AGG + Chr4:80315676-80315695 None:intergenic 55.0%
TTGACGAGGCTTTGCACGAG+GGG - Chr4:80316944-80316963 MsG0480023061.01.T01:intron 55.0%
TTTCGCCTAGTACAGCCACG+AGG - Chr4:80312471-80312490 MsG0480023061.01.T01:intron 55.0%
! GAGGAGTATGCACTTGGGCT+CGG + Chr4:80313384-80313403 None:intergenic 55.0%
! GCTTAGGTGGTTTGGGCATG+TGG - Chr4:80311900-80311919 MsG0480023061.01.T01:intron 55.0%
! GTTCCTTTGGAGGAGAGGAG+TGG - Chr4:80315515-80315534 MsG0480023061.01.T01:intron 55.0%
!! AGAGGAGTGGAGTGTCGTTG+GGG - Chr4:80315528-80315547 MsG0480023061.01.T01:intron 55.0%
!! AGATGGTGGATCATGCTGGC+AGG + Chr4:80316053-80316072 None:intergenic 55.0%
!! AGTTGCCTAGAGCGTTGGCT+AGG - Chr4:80315668-80315687 MsG0480023061.01.T01:intron 55.0%
!! GAGAGGAGTGGAGTGTCGTT+GGG - Chr4:80315527-80315546 MsG0480023061.01.T01:intron 55.0%
AATCTGAGGGGCGGGTGTTC+TGG - Chr4:80311493-80311512 MsG0480023061.01.T01:CDS 60.0%
ACAGGGATTGGGAAGCCTCC+TGG - Chr4:80316467-80316486 MsG0480023061.01.T01:intron 60.0%
ATGCACTTGGGCTCGGCAAC+AGG + Chr4:80313377-80313396 None:intergenic 60.0%
CGACCCCACTTAGTGGGAAC+AGG + Chr4:80312307-80312326 None:intergenic 60.0%
CTGAGAGCAAGCTGGTAGGG+TGG - Chr4:80317293-80317312 MsG0480023061.01.T01:CDS 60.0%
GGGGGTCATGGAAGCCACAA+AGG - Chr4:80313247-80313266 MsG0480023061.01.T01:intron 60.0%
TGACGAGGCTTTGCACGAGG+GGG - Chr4:80316945-80316964 MsG0480023061.01.T01:intron 60.0%
!! GCGTTGGCTAGGTGACAGAG+AGG - Chr4:80315679-80315698 MsG0480023061.01.T01:intron 60.0%
!! GGAGAGGAGTGGAGTGTCGT+TGG - Chr4:80315526-80315545 MsG0480023061.01.T01:intron 60.0%
GGCTGCAAAGCCATCTGCCG+CGG - Chr4:80316019-80316038 MsG0480023061.01.T01:intron 65.0%
! GACGAAGCACCCCACATGGC+AGG + Chr4:80313216-80313235 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 80311150 80317341 80311150 ID=MsG0480023061.01;Name=MsG0480023061.01
Chr4 mRNA 80311150 80317341 80311150 ID=MsG0480023061.01.T01;Parent=MsG0480023061.01;Name=MsG0480023061.01.T01;_AED=0.44;_eAED=0.45;_QI=0|1|0.85|1|1|1|7|264|185
Chr4 exon 80311150 80311548 80311150 ID=MsG0480023061.01.T01:exon:32452;Parent=MsG0480023061.01.T01
Chr4 exon 80311944 80312020 80311944 ID=MsG0480023061.01.T01:exon:32451;Parent=MsG0480023061.01.T01
Chr4 exon 80312113 80312171 80312113 ID=MsG0480023061.01.T01:exon:32450;Parent=MsG0480023061.01.T01
Chr4 exon 80315222 80315295 80315222 ID=MsG0480023061.01.T01:exon:32449;Parent=MsG0480023061.01.T01
Chr4 exon 80315390 80315440 80315390 ID=MsG0480023061.01.T01:exon:32448;Parent=MsG0480023061.01.T01
Chr4 exon 80317107 80317174 80317107 ID=MsG0480023061.01.T01:exon:32447;Parent=MsG0480023061.01.T01
Chr4 exon 80317248 80317341 80317248 ID=MsG0480023061.01.T01:exon:32446;Parent=MsG0480023061.01.T01
Chr4 CDS 80317248 80317341 80317248 ID=MsG0480023061.01.T01:cds;Parent=MsG0480023061.01.T01
Chr4 CDS 80317107 80317174 80317107 ID=MsG0480023061.01.T01:cds;Parent=MsG0480023061.01.T01
Chr4 CDS 80315390 80315440 80315390 ID=MsG0480023061.01.T01:cds;Parent=MsG0480023061.01.T01
Chr4 CDS 80315222 80315295 80315222 ID=MsG0480023061.01.T01:cds;Parent=MsG0480023061.01.T01
Chr4 CDS 80312113 80312171 80312113 ID=MsG0480023061.01.T01:cds;Parent=MsG0480023061.01.T01
Chr4 CDS 80311944 80312020 80311944 ID=MsG0480023061.01.T01:cds;Parent=MsG0480023061.01.T01
Chr4 CDS 80311414 80311548 80311414 ID=MsG0480023061.01.T01:cds;Parent=MsG0480023061.01.T01
Chr4 three_prime_UTR 80311150 80311413 80311150 ID=MsG0480023061.01.T01:three_prime_utr;Parent=MsG0480023061.01.T01
Gene Sequence

>MsG0480023061.01.T01

TTGAATCAGGTAGGTTTTGAGATGATTGATGCATTTGCTGAGTCACAAGGGATTGCCATGGATACAGTTCATTGCAAAGCTATTTTTGGAAAAGGTTTTGTTGGTGATGTTCCCGTTTTCCTTGCAAAGCCTCAAACTTATATGAATCTCAGTGGTGAATCAGCAGGACCACTGGCTGCTTATTACAAGTTACCCCTTAATCAGGTGCTTGTGTTCCATGATGATATGAACCTGCCATGTGGGGTGCTTCGTCTTAATGACAAAGGGGGTCATGGAAGCCACAAAGGGCTAAAGAGTGTTATTTATAACTTCAGAGATAATAGTGAATTTCCTCGTCTAAGAATTGGGATTGGGAAGCCTCCTGGACAAATGGATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGACAACGAATTGACGAGGCTTTGCACGAGGGGGTTGATGCCTTGAAGCTTCTTCTATTTAAAGGTTTGGTAGTGAGTGCAAAAAGGTTCAACAAAGAACAGAAATATAAGCACTTAAAAGTGCAGACATTACCAGTTTGGTAG
Protein sequence

>MsG0480023061.01.T01

LNQVGFEMIDAFAESQGIAMDTVHCKAIFGKGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLNDKGGHGSHKGLKSVIYNFRDNSEFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALHEGVDALKLLLFKGLVVSAKRFNKEQKYKHLKVQTLPVW*