Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023591.01.T01 | PNX82141.1 | 83.598 | 189 | 31 | 0 | 25 | 213 | 65 | 253 | 9.55E-113 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023591.01.T01 | A0A140FAN3 | 47.312 | 186 | 85 | 2 | 28 | 201 | 126 | 310 | 8.76E-54 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023591.01.T01 | A0A2K3LUC7 | 83.598 | 189 | 31 | 0 | 25 | 213 | 65 | 253 | 4.56e-113 | 333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005113.01 | MsG0480023591.01 | 0.800313 | 1.527936e-48 | 7.092348e-46 |
| MsG0480023591.01 | MsG0580029941.01 | 0.818548 | 1.850684e-52 | 1.389556e-49 |
| MsG0480023591.01 | MsG0780040430.01 | 0.802344 | 5.864502e-49 | 2.865963e-46 |
| MsG0480023591.01 | MsG0780040431.01 | 0.819134 | 1.361980e-52 | 1.039233e-49 |
| MsG0480023591.01 | MsG0880045179.01 | 0.802623 | 5.139414e-49 | 2.529405e-46 |
| MsG0280008899.01 | MsG0480023591.01 | 0.824302 | 8.688232e-54 | 7.665193e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023591.01.T01 | MTR_8g096580 | 70.792 | 202 | 59 | 0 | 25 | 226 | 123 | 324 | 2.78e-105 | 307 |
| MsG0480023591.01.T01 | MTR_8g096610 | 73.684 | 190 | 32 | 5 | 28 | 212 | 54 | 230 | 4.43e-86 | 254 |
| MsG0480023591.01.T01 | MTR_8g096620 | 42.784 | 194 | 89 | 3 | 25 | 201 | 123 | 311 | 3.58e-50 | 167 |
| MsG0480023591.01.T01 | MTR_5g008850 | 38.043 | 184 | 104 | 3 | 24 | 198 | 127 | 309 | 6.54e-36 | 130 |
| MsG0480023591.01.T01 | MTR_3g087860 | 34.884 | 129 | 77 | 4 | 25 | 151 | 84 | 207 | 5.87e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023591.01.T01 | AT5G50600 | 42.857 | 189 | 95 | 3 | 25 | 201 | 123 | 310 | 5.53e-51 | 169 |
| MsG0480023591.01.T01 | AT5G50700 | 42.857 | 189 | 95 | 3 | 25 | 201 | 123 | 310 | 5.53e-51 | 169 |
| MsG0480023591.01.T01 | AT3G47350 | 44.211 | 190 | 101 | 2 | 25 | 212 | 122 | 308 | 1.13e-46 | 157 |
| MsG0480023591.01.T01 | AT5G50690 | 47.126 | 174 | 83 | 3 | 25 | 193 | 123 | 292 | 1.65e-46 | 156 |
| MsG0480023591.01.T01 | AT5G50590 | 47.126 | 174 | 83 | 3 | 25 | 193 | 123 | 292 | 1.65e-46 | 156 |
| MsG0480023591.01.T01 | AT3G47360 | 43.158 | 190 | 103 | 4 | 25 | 212 | 123 | 309 | 4.50e-43 | 147 |
| MsG0480023591.01.T01 | AT5G50770 | 38.710 | 186 | 101 | 3 | 25 | 198 | 123 | 307 | 6.70e-42 | 145 |
| MsG0480023591.01.T01 | AT4G10020 | 41.011 | 178 | 95 | 4 | 28 | 196 | 128 | 304 | 1.89e-37 | 135 |
| MsG0480023591.01.T01 | AT5G50690 | 54.545 | 110 | 49 | 1 | 25 | 134 | 123 | 231 | 1.24e-33 | 121 |
| MsG0480023591.01.T01 | AT5G50590 | 54.545 | 110 | 49 | 1 | 25 | 134 | 123 | 231 | 1.24e-33 | 121 |
| MsG0480023591.01.T01 | AT3G47350 | 44.755 | 143 | 74 | 2 | 25 | 165 | 122 | 261 | 1.45e-32 | 120 |
| MsG0480023591.01.T01 | AT3G47350 | 34.211 | 190 | 76 | 3 | 25 | 212 | 122 | 264 | 9.87e-23 | 93.2 |
| MsG0480023591.01.T01 | AT5G10050 | 34.884 | 129 | 77 | 4 | 25 | 151 | 78 | 201 | 9.65e-13 | 66.2 |
| MsG0480023591.01.T01 | AT1G49670 | 37.069 | 116 | 70 | 2 | 25 | 137 | 90 | 205 | 1.98e-11 | 63.5 |
| MsG0480023591.01.T01 | AT1G49670 | 37.069 | 116 | 70 | 2 | 25 | 137 | 90 | 205 | 1.99e-11 | 63.5 |
Find 58 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAATAATGCTGGAATTAT+TGG | 0.187644 | 4:-87337295 | MsG0480023591.01.T01:CDS |
| GTCTAAATACACACAAATTA+TGG | 0.246179 | 4:-87337239 | MsG0480023591.01.T01:intron |
| TAAATAATGCTGGAATTATT+GGG | 0.259768 | 4:-87337294 | MsG0480023591.01.T01:CDS |
| ATTGAACTTGGTTGGTCTAT+TGG | 0.282291 | 4:-87336431 | MsG0480023591.01.T01:CDS |
| TTTCTCAGGAAACAAACTTC+TGG | 0.287027 | 4:-87336751 | MsG0480023591.01.T01:intron |
| TCAAAACAGACCTGGCATTC+AGG | 0.295225 | 4:-87336382 | MsG0480023591.01.T01:CDS |
| TGGACCCAACGACACATCTT+TGG | 0.322629 | 4:-87336194 | MsG0480023591.01.T01:CDS |
| TTCTCAGGAAACAAACTTCT+GGG | 0.368129 | 4:-87336750 | MsG0480023591.01.T01:intron |
| GGACCCAACGACACATCTTT+GGG | 0.376556 | 4:-87336193 | MsG0480023591.01.T01:CDS |
| CATTGAAGATGAGGCTACTC+TGG | 0.388998 | 4:-87336357 | MsG0480023591.01.T01:CDS |
| CAAGAGTTACCAAGAGCTTA+AGG | 0.391355 | 4:-87336126 | MsG0480023591.01.T01:CDS |
| GTTTCATGCAGTGGATCATC+TGG | 0.391549 | 4:-87337317 | MsG0480023591.01.T01:CDS |
| TTTATTCTACCTTAAGCTCT+TGG | 0.393929 | 4:+87336117 | None:intergenic |
| CTTAAGCTCTTGGTAACTCT+TGG | 0.396197 | 4:+87336127 | None:intergenic |
| TAAGCAGATTATCATTCTTC+CGG | 0.400439 | 4:+87336153 | None:intergenic |
| TAGATACTGAGTCTCGGAAT+TGG | 0.408361 | 4:+87336638 | None:intergenic |
| TGTATGTGACAAACCCTTCA+TGG | 0.413786 | 4:-87336265 | MsG0480023591.01.T01:CDS |
| TGCACCTTTCACTATGTCCT+TGG | 0.421028 | 4:+87336301 | None:intergenic |
| TTTATCCCCACCTGGTGGAC+TGG | 0.435024 | 4:-87336214 | MsG0480023591.01.T01:CDS |
| AATATTACTTTGACCCATGA+AGG | 0.435612 | 4:+87336251 | None:intergenic |
| AATGATATATCAGGCTAGTA+AGG | 0.453299 | 4:-87336486 | MsG0480023591.01.T01:intron |
| CAAAACAGACCTGGCATTCA+GGG | 0.453872 | 4:-87336381 | MsG0480023591.01.T01:CDS |
| CTTCAATGACCCTGAATGCC+AGG | 0.457896 | 4:+87336372 | None:intergenic |
| AGATTATCATTCTTCCGGTA+AGG | 0.458492 | 4:+87336158 | None:intergenic |
| GATCATCTGGTAAATAATGC+TGG | 0.468710 | 4:-87337304 | MsG0480023591.01.T01:CDS |
| CTTTAAGAATTGAACTTGGT+TGG | 0.480366 | 4:-87336439 | MsG0480023591.01.T01:CDS |
| TACTCTGGGAAGACTTCCAT+TGG | 0.485275 | 4:-87336342 | MsG0480023591.01.T01:CDS |
| GGCATAACAATTGCCACACC+TGG | 0.489859 | 4:-87336410 | MsG0480023591.01.T01:CDS |
| TGGGGTTCCAAGGTTGGTAG+AGG | 0.491125 | 4:-87337275 | MsG0480023591.01.T01:CDS |
| ACATAGTGAAAGGTGCATGC+AGG | 0.491624 | 4:-87336295 | MsG0480023591.01.T01:CDS |
| GATTATCATTCTTCCGGTAA+GGG | 0.496088 | 4:+87336159 | None:intergenic |
| CTGGAATTATTGGGGTTCCA+AGG | 0.514905 | 4:-87337285 | MsG0480023591.01.T01:CDS |
| ACTCTGGGAAGACTTCCATT+GGG | 0.519855 | 4:-87336341 | MsG0480023591.01.T01:CDS |
| AATCCCAAAGATGTGTCGTT+GGG | 0.526397 | 4:+87336190 | None:intergenic |
| CATAGTGAAAGGTGCATGCA+GGG | 0.526660 | 4:-87336294 | MsG0480023591.01.T01:CDS |
| ATAGTCGTTGCTTCAGCTTG+TGG | 0.530720 | 4:-87336668 | MsG0480023591.01.T01:CDS |
| TCGTTGCTTCAGCTTGTGGA+TGG | 0.531934 | 4:-87336664 | MsG0480023591.01.T01:CDS |
| GTCGTTGGGTCCAGTCCACC+AGG | 0.532099 | 4:+87336204 | None:intergenic |
| TTGGGTCCAGTCCACCAGGT+GGG | 0.538985 | 4:+87336208 | None:intergenic |
| GAGACTTTAAGAATTGAACT+TGG | 0.549331 | 4:-87336443 | MsG0480023591.01.T01:CDS |
| AAATCCCAAAGATGTGTCGT+TGG | 0.552388 | 4:+87336189 | None:intergenic |
| AATTATTGGGGTTCCAAGGT+TGG | 0.558074 | 4:-87337281 | MsG0480023591.01.T01:CDS |
| AAATAATGCTGGAATTATTG+GGG | 0.573354 | 4:-87337293 | MsG0480023591.01.T01:CDS |
| GAAGGTGCTTTATCCCCACC+TGG | 0.576932 | 4:-87336222 | MsG0480023591.01.T01:CDS |
| GTATGTGACAAACCCTTCAT+GGG | 0.577043 | 4:-87336264 | MsG0480023591.01.T01:CDS |
| ATATTACTTTGACCCATGAA+GGG | 0.580640 | 4:+87336252 | None:intergenic |
| AACTTCTGGGGAGCAGCTCG+TGG | 0.582009 | 4:-87336737 | MsG0480023591.01.T01:CDS |
| ATTGAAGATGAGGCTACTCT+GGG | 0.592222 | 4:-87336356 | MsG0480023591.01.T01:CDS |
| ACGTTATAGATACTGAGTCT+CGG | 0.601954 | 4:+87336632 | None:intergenic |
| ATTCAGGGTCATTGAAGATG+AGG | 0.603172 | 4:-87336366 | MsG0480023591.01.T01:CDS |
| TCTCAGGAAACAAACTTCTG+GGG | 0.608091 | 4:-87336749 | MsG0480023591.01.T01:intron |
| TGGGTCCAGTCCACCAGGTG+GGG | 0.616076 | 4:+87336209 | None:intergenic |
| TTCATCAGTTGAATGTGCCA+AGG | 0.618817 | 4:-87336318 | MsG0480023591.01.T01:CDS |
| GGTGCTTTATCCCCACCTGG+TGG | 0.631992 | 4:-87336219 | MsG0480023591.01.T01:CDS |
| CATTCAACTGATGAACCCAA+TGG | 0.642419 | 4:+87336326 | None:intergenic |
| GTTGGGTCCAGTCCACCAGG+TGG | 0.645605 | 4:+87336207 | None:intergenic |
| ATAGTGAAAGGTGCATGCAG+GGG | 0.678255 | 4:-87336293 | MsG0480023591.01.T01:CDS |
| TGTGCCAAGGACATAGTGAA+AGG | 0.715969 | 4:-87336305 | MsG0480023591.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAAAATTATATGAT+GGG | - | Chr4:87336153-87336172 | MsG0480023591.01.T01:CDS | 10.0% |
| !! | GAACAAAAAAAATTATATGA+TGG | - | Chr4:87336152-87336171 | MsG0480023591.01.T01:CDS | 15.0% |
| !! | TTATTAACAAATAACAATGT+TGG | - | Chr4:87336365-87336384 | MsG0480023591.01.T01:CDS | 15.0% |
| !!! | TGGAACTTTATTTAAAATTA+TGG | - | Chr4:87336538-87336557 | MsG0480023591.01.T01:intron | 15.0% |
| !! | ATGTTGTAAAGAAACAAAAA+CGG | - | Chr4:87336639-87336658 | MsG0480023591.01.T01:CDS | 20.0% |
| !! | CAACATCTTAAAAATAGTAA+AGG | - | Chr4:87336803-87336822 | MsG0480023591.01.T01:intron | 20.0% |
| !! | GAGTATAATTTACATATACA+TGG | - | Chr4:87336483-87336502 | MsG0480023591.01.T01:intron | 20.0% |
| !! | GCTCTTAATTATTATTATCA+TGG | - | Chr4:87336676-87336695 | MsG0480023591.01.T01:CDS | 20.0% |
| !! | TAAATAATGCTGGAATTATT+GGG | - | Chr4:87336207-87336226 | MsG0480023591.01.T01:CDS | 20.0% |
| !!! | ATAATAATAATTAAGAGCAC+CGG | + | Chr4:87336674-87336693 | None:intergenic | 20.0% |
| !!! | CAAAGTAATATTTTATTGGA+AGG | - | Chr4:87337261-87337280 | MsG0480023591.01.T01:CDS | 20.0% |
| !!! | CTTTACTATTTTTAAGATGT+TGG | + | Chr4:87336805-87336824 | None:intergenic | 20.0% |
| ! | AAATAATGCTGGAATTATTG+GGG | - | Chr4:87336208-87336227 | MsG0480023591.01.T01:CDS | 25.0% |
| ! | AATCTATATATGTGATGTTG+TGG | + | Chr4:87336941-87336960 | None:intergenic | 25.0% |
| ! | ACACACATATATATAGATGA+TGG | - | Chr4:87336971-87336990 | MsG0480023591.01.T01:intron | 25.0% |
| ! | ACCTATTCTTGCAAATATTA+TGG | - | Chr4:87336610-87336629 | MsG0480023591.01.T01:intron | 25.0% |
| ! | ATCTTAAAAATAGTAAAGGC+AGG | - | Chr4:87336807-87336826 | MsG0480023591.01.T01:intron | 25.0% |
| ! | CAAAAGTGGTTTCATATTAA+AGG | - | Chr4:87336708-87336727 | MsG0480023591.01.T01:CDS | 25.0% |
| ! | CCTATTCTTGCAAATATTAT+GGG | - | Chr4:87336611-87336630 | MsG0480023591.01.T01:intron | 25.0% |
| ! | GTAAATAATGCTGGAATTAT+TGG | - | Chr4:87336206-87336225 | MsG0480023591.01.T01:CDS | 25.0% |
| ! | GTCTAAATACACACAAATTA+TGG | - | Chr4:87336262-87336281 | MsG0480023591.01.T01:CDS | 25.0% |
| !! | GGGTCAAAGTAATATTTTAT+TGG | - | Chr4:87337257-87337276 | MsG0480023591.01.T01:CDS | 25.0% |
| !! | TTTATGTGTGTATTTTTCTC+AGG | - | Chr4:87336736-87336755 | MsG0480023591.01.T01:CDS | 25.0% |
| !!! | GATTTGTTGAATGATATATC+AGG | - | Chr4:87337006-87337025 | MsG0480023591.01.T01:intron | 25.0% |
| AATATTACTTTGACCCATGA+AGG | + | Chr4:87337253-87337272 | None:intergenic | 30.0% | |
| AATGATATATCAGGCTAGTA+AGG | - | Chr4:87337015-87337034 | MsG0480023591.01.T01:intron | 30.0% | |
| ATATTACTTTGACCCATGAA+GGG | + | Chr4:87337252-87337271 | None:intergenic | 30.0% | |
| CCCATAATATTTGCAAGAAT+AGG | + | Chr4:87336614-87336633 | None:intergenic | 30.0% | |
| TAAGCAGATTATCATTCTTC+CGG | + | Chr4:87337351-87337370 | None:intergenic | 30.0% | |
| TTTATTCTACCTTAAGCTCT+TGG | + | Chr4:87337387-87337406 | None:intergenic | 30.0% | |
| ! | CTTTAAGAATTGAACTTGGT+TGG | - | Chr4:87337062-87337081 | MsG0480023591.01.T01:intron | 30.0% |
| ! | GAGACTTTAAGAATTGAACT+TGG | - | Chr4:87337058-87337077 | MsG0480023591.01.T01:intron | 30.0% |
| !! | TTACCTCTGAAATTGTAAGA+TGG | - | Chr4:87336518-87336537 | MsG0480023591.01.T01:intron | 30.0% |
| ACGTTATAGATACTGAGTCT+CGG | + | Chr4:87336872-87336891 | None:intergenic | 35.0% | |
| AGATTATCATTCTTCCGGTA+AGG | + | Chr4:87337346-87337365 | None:intergenic | 35.0% | |
| GATCATCTGGTAAATAATGC+TGG | - | Chr4:87336197-87336216 | MsG0480023591.01.T01:CDS | 35.0% | |
| GATTATCATTCTTCCGGTAA+GGG | + | Chr4:87337345-87337364 | None:intergenic | 35.0% | |
| GTTCCATCTTACAATTTCAG+AGG | + | Chr4:87336524-87336543 | None:intergenic | 35.0% | |
| TTCTCAGGAAACAAACTTCT+GGG | - | Chr4:87336751-87336770 | MsG0480023591.01.T01:intron | 35.0% | |
| TTTCTCAGGAAACAAACTTC+TGG | - | Chr4:87336750-87336769 | MsG0480023591.01.T01:intron | 35.0% | |
| !! | ATTGAACTTGGTTGGTCTAT+TGG | - | Chr4:87337070-87337089 | MsG0480023591.01.T01:intron | 35.0% |
| !! | GTACTTTTTGTTTCATGCAG+TGG | - | Chr4:87336175-87336194 | MsG0480023591.01.T01:CDS | 35.0% |
| !!! | AAGGTTGGTAGAGGATTTTT+CGG | - | Chr4:87336235-87336254 | MsG0480023591.01.T01:CDS | 35.0% |
| !!! | AGGTCTGTTTTGATAAAACC+AGG | + | Chr4:87337112-87337131 | None:intergenic | 35.0% |
| !!! | TGGTTTTATCAAAACAGACC+TGG | - | Chr4:87337111-87337130 | MsG0480023591.01.T01:intron | 35.0% |
| !!! | TGTTTTGATAAAACCAGGTG+TGG | + | Chr4:87337107-87337126 | None:intergenic | 35.0% |
| AAATCCCAAAGATGTGTCGT+TGG | + | Chr4:87337315-87337334 | None:intergenic | 40.0% | |
| AATTATTGGGGTTCCAAGGT+TGG | - | Chr4:87336220-87336239 | MsG0480023591.01.T01:CDS | 40.0% | |
| ACAAAAACGGTCATGCTAAC+CGG | - | Chr4:87336652-87336671 | MsG0480023591.01.T01:CDS | 40.0% | |
| ATTCAGGGTCATTGAAGATG+AGG | - | Chr4:87337135-87337154 | MsG0480023591.01.T01:intron | 40.0% | |
| ATTGAAGATGAGGCTACTCT+GGG | - | Chr4:87337145-87337164 | MsG0480023591.01.T01:intron | 40.0% | |
| CAAGAGTTACCAAGAGCTTA+AGG | - | Chr4:87337375-87337394 | MsG0480023591.01.T01:CDS | 40.0% | |
| CATTCAACTGATGAACCCAA+TGG | + | Chr4:87337178-87337197 | None:intergenic | 40.0% | |
| GAAAAATCCTCTACCAACCT+TGG | + | Chr4:87336236-87336255 | None:intergenic | 40.0% | |
| GTATGTGACAAACCCTTCAT+GGG | - | Chr4:87337237-87337256 | MsG0480023591.01.T01:intron | 40.0% | |
| TAGATACTGAGTCTCGGAAT+TGG | + | Chr4:87336866-87336885 | None:intergenic | 40.0% | |
| TCTCAGGAAACAAACTTCTG+GGG | - | Chr4:87336752-87336771 | MsG0480023591.01.T01:intron | 40.0% | |
| TGTATGTGACAAACCCTTCA+TGG | - | Chr4:87337236-87337255 | MsG0480023591.01.T01:intron | 40.0% | |
| TTCATCAGTTGAATGTGCCA+AGG | - | Chr4:87337183-87337202 | MsG0480023591.01.T01:intron | 40.0% | |
| ! | AATCCCAAAGATGTGTCGTT+GGG | + | Chr4:87337314-87337333 | None:intergenic | 40.0% |
| ! | CTTAAGCTCTTGGTAACTCT+TGG | + | Chr4:87337377-87337396 | None:intergenic | 40.0% |
| !! | GGATTTTGACAAACCCTTAC+CGG | - | Chr4:87337329-87337348 | MsG0480023591.01.T01:CDS | 40.0% |
| ATAGTCGTTGCTTCAGCTTG+TGG | - | Chr4:87336833-87336852 | MsG0480023591.01.T01:intron | 45.0% | |
| CAAAACAGACCTGGCATTCA+GGG | - | Chr4:87337120-87337139 | MsG0480023591.01.T01:intron | 45.0% | |
| CATGGTCGTTGTTGCAAAAG+TGG | - | Chr4:87336694-87336713 | MsG0480023591.01.T01:CDS | 45.0% | |
| CATTGAAGATGAGGCTACTC+TGG | - | Chr4:87337144-87337163 | MsG0480023591.01.T01:intron | 45.0% | |
| CTGGAATTATTGGGGTTCCA+AGG | - | Chr4:87336216-87336235 | MsG0480023591.01.T01:CDS | 45.0% | |
| GTTTCATGCAGTGGATCATC+TGG | - | Chr4:87336184-87336203 | MsG0480023591.01.T01:CDS | 45.0% | |
| TCAAAACAGACCTGGCATTC+AGG | - | Chr4:87337119-87337138 | MsG0480023591.01.T01:intron | 45.0% | |
| TGCACCTTTCACTATGTCCT+TGG | + | Chr4:87337203-87337222 | None:intergenic | 45.0% | |
| TGTGCCAAGGACATAGTGAA+AGG | - | Chr4:87337196-87337215 | MsG0480023591.01.T01:intron | 45.0% | |
| ! | ACATAGTGAAAGGTGCATGC+AGG | - | Chr4:87337206-87337225 | MsG0480023591.01.T01:intron | 45.0% |
| ! | ACTCTGGGAAGACTTCCATT+GGG | - | Chr4:87337160-87337179 | MsG0480023591.01.T01:intron | 45.0% |
| ! | ATAGTGAAAGGTGCATGCAG+GGG | - | Chr4:87337208-87337227 | MsG0480023591.01.T01:intron | 45.0% |
| ! | CATAGTGAAAGGTGCATGCA+GGG | - | Chr4:87337207-87337226 | MsG0480023591.01.T01:intron | 45.0% |
| ! | TACTCTGGGAAGACTTCCAT+TGG | - | Chr4:87337159-87337178 | MsG0480023591.01.T01:intron | 45.0% |
| CTTCAATGACCCTGAATGCC+AGG | + | Chr4:87337132-87337151 | None:intergenic | 50.0% | |
| GGACCCAACGACACATCTTT+GGG | - | Chr4:87337308-87337327 | MsG0480023591.01.T01:CDS | 50.0% | |
| GGCATAACAATTGCCACACC+TGG | - | Chr4:87337091-87337110 | MsG0480023591.01.T01:intron | 50.0% | |
| TCGTTGCTTCAGCTTGTGGA+TGG | - | Chr4:87336837-87336856 | MsG0480023591.01.T01:intron | 50.0% | |
| TGGACCCAACGACACATCTT+TGG | - | Chr4:87337307-87337326 | MsG0480023591.01.T01:CDS | 50.0% | |
| ! | TTTATCCCCACCTGGTGGAC+TGG | - | Chr4:87337287-87337306 | MsG0480023591.01.T01:CDS | 55.0% |
| !! | GAAGGTGCTTTATCCCCACC+TGG | - | Chr4:87337279-87337298 | MsG0480023591.01.T01:CDS | 55.0% |
| !! | TGGGGTTCCAAGGTTGGTAG+AGG | - | Chr4:87336226-87336245 | MsG0480023591.01.T01:CDS | 55.0% |
| GGTGCTTTATCCCCACCTGG+TGG | - | Chr4:87337282-87337301 | MsG0480023591.01.T01:CDS | 60.0% | |
| TTGGGTCCAGTCCACCAGGT+GGG | + | Chr4:87337296-87337315 | None:intergenic | 60.0% | |
| ! | AACTTCTGGGGAGCAGCTCG+TGG | - | Chr4:87336764-87336783 | MsG0480023591.01.T01:intron | 60.0% |
| GTCGTTGGGTCCAGTCCACC+AGG | + | Chr4:87337300-87337319 | None:intergenic | 65.0% | |
| GTTGGGTCCAGTCCACCAGG+TGG | + | Chr4:87337297-87337316 | None:intergenic | 65.0% | |
| TGGGTCCAGTCCACCAGGTG+GGG | + | Chr4:87337295-87337314 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 87336113 | 87337410 | 87336113 | ID=MsG0480023591.01;Name=MsG0480023591.01 |
| Chr4 | mRNA | 87336113 | 87337410 | 87336113 | ID=MsG0480023591.01.T01;Parent=MsG0480023591.01;Name=MsG0480023591.01.T01;_AED=0.49;_eAED=0.54;_QI=0|1|0.66|1|1|1|3|5|226 |
| Chr4 | exon | 87336113 | 87336495 | 87336113 | ID=MsG0480023591.01.T01:exon:6141;Parent=MsG0480023591.01.T01 |
| Chr4 | exon | 87336634 | 87336765 | 87336634 | ID=MsG0480023591.01.T01:exon:6140;Parent=MsG0480023591.01.T01 |
| Chr4 | exon | 87337240 | 87337410 | 87337240 | ID=MsG0480023591.01.T01:exon:6139;Parent=MsG0480023591.01.T01 |
| Chr4 | CDS | 87337240 | 87337410 | 87337240 | ID=MsG0480023591.01.T01:cds;Parent=MsG0480023591.01.T01 |
| Chr4 | CDS | 87336634 | 87336765 | 87336634 | ID=MsG0480023591.01.T01:cds;Parent=MsG0480023591.01.T01 |
| Chr4 | CDS | 87336118 | 87336495 | 87336118 | ID=MsG0480023591.01.T01:cds;Parent=MsG0480023591.01.T01 |
| Chr4 | three_prime_UTR | 87336113 | 87336117 | 87336113 | ID=MsG0480023591.01.T01:three_prime_utr;Parent=MsG0480023591.01.T01 |
| Gene Sequence |
| Protein sequence |
