AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008899.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008899.01.T01 MTR_2g450310 75.915 328 74 1 1 328 1 323 2.05e-178 504
MsG0280008899.01.T01 MTR_2g450510 70.427 328 92 1 1 328 1 323 1.51e-165 473
MsG0280008899.01.T01 MTR_1088s0010 94.737 152 8 0 1 152 1 152 2.88e-106 308
MsG0280008899.01.T01 MTR_2g020630 36.747 332 197 6 1 328 10 332 2.91e-70 228
MsG0280008899.01.T01 MTR_4g124800 38.339 313 182 6 21 328 29 335 1.25e-63 211
MsG0280008899.01.T01 MTR_1308s0010 93.814 97 6 0 232 328 1 97 1.50e-61 195
MsG0280008899.01.T01 MTR_2g044140 36.308 325 196 5 5 326 14 330 5.76e-61 204
MsG0280008899.01.T01 MTR_2g043850 36.923 325 194 5 5 326 14 330 1.73e-58 198
MsG0280008899.01.T01 MTR_1372s0010 86.792 53 7 0 178 230 27 79 4.16e-25 97.4
MsG0280008899.01.T01 MTR_1g069275 25.941 239 135 9 7 244 27 224 5.81e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008899.01.T01 AT1G19250 35.671 328 196 7 4 326 12 329 6.08e-65 215
MsG0280008899.01.T01 AT5G45180 32.317 328 167 9 4 326 12 289 5.71e-52 179

Find 79 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTACCTTTAAGATTTC+TGG 0.063150 2:+41286331 None:intergenic
AAGGGGAACTTAGGAATATT+TGG 0.185688 2:+41286363 None:intergenic
TGCAAATATGCTCTACAAAT+TGG 0.214406 2:-41287424 MsG0280008899.01.T01:CDS
GGAAGTCTTGTTTGTTAGTT+TGG 0.241397 2:+41287326 None:intergenic
ATGTATGTTACAGTGTTAAA+TGG 0.267837 2:-41284224 MsG0280008899.01.T01:CDS
TGGAAGTCCATTTGGTTCTA+AGG 0.280378 2:-41287107 MsG0280008899.01.T01:CDS
AGGTAAAGTTATGCATTCTT+TGG 0.285374 2:-41286318 MsG0280008899.01.T01:CDS
AAATGAAGTCATGGGAATTA+TGG 0.290096 2:-41287138 MsG0280008899.01.T01:CDS
GAAACCAGTGTGTAGTTCTT+TGG 0.303585 2:+41286037 None:intergenic
ATGATGGCATTGGTGGAATA+TGG 0.334253 2:-41287375 MsG0280008899.01.T01:CDS
TCTTGCACTTGTTGATTACT+TGG 0.340440 2:+41287259 None:intergenic
AGCTGCAGTCTTGTTGTCTA+AGG 0.341399 2:+41286286 None:intergenic
GACATTGCGGGCATTAATCT+TGG 0.343163 2:-41286003 MsG0280008899.01.T01:CDS
GACTATGGTATTGGTGAAAC+GGG 0.348358 2:+41284175 None:intergenic
CCCATGGAAAATCTGTAAAC+TGG 0.363372 2:+41287305 None:intergenic
AGGAAATTTGACTATGGTAT+TGG 0.365817 2:+41284166 None:intergenic
AAAAGGCCCAGAAATCTTAA+AGG 0.366782 2:-41286338 MsG0280008899.01.T01:CDS
TCATTGATATTGATTATGTT+GGG 0.373374 2:-41287174 MsG0280008899.01.T01:CDS
ACTTTACCTTTAAGATTTCT+GGG 0.376003 2:+41286332 None:intergenic
TTGGAATTGAATCTTATGTA+TGG 0.382205 2:+41287199 None:intergenic
CTCTCTAGGAAATTTGACTA+TGG 0.384855 2:+41284160 None:intergenic
TTGTTTGTTAGTTTGGAGTT+TGG 0.394924 2:+41287333 None:intergenic
GTCATTGATATTGATTATGT+TGG 0.404807 2:-41287175 MsG0280008899.01.T01:CDS
CTTTGCATTGGAAAGTATAG+TGG 0.412036 2:-41286390 MsG0280008899.01.T01:CDS
AATTTGTAGAGCATATTTGC+AGG 0.413362 2:+41287426 None:intergenic
TTGTTGAAACATATTTGAAA+TGG 0.419853 2:-41284853 MsG0280008899.01.T01:CDS
ATGCCCGCAATGTCAAAATC+TGG 0.420705 2:+41286012 None:intergenic
CATTTGGTTCTAAGGGAACT+TGG 0.423541 2:-41287099 MsG0280008899.01.T01:CDS
TCATCAGATTCGTAGACAAT+TGG 0.431340 2:+41287394 None:intergenic
AGAGTTACAATAGTAGGCTC+AGG 0.434337 2:-41286245 MsG0280008899.01.T01:CDS
ATAATCAATATCAATGACTT+TGG 0.438062 2:+41287180 None:intergenic
TGGGAATTATGGAGTGGTAA+TGG 0.443970 2:-41287127 MsG0280008899.01.T01:CDS
TCCTAAGTTCCCCTTGGAAA+AGG 0.444561 2:-41286355 MsG0280008899.01.T01:CDS
TGACTATGGTATTGGTGAAA+CGG 0.446142 2:+41284174 None:intergenic
TCTTGAAGAAAACTGTAATC+AGG 0.450865 2:+41284800 None:intergenic
AAGTTTGTCATTCTTTGCAT+TGG 0.451719 2:-41286402 MsG0280008899.01.T01:CDS
AACAAGAGAGTTACAATAGT+AGG 0.452094 2:-41286251 MsG0280008899.01.T01:CDS
AGTGGTAATGGAAGTCCATT+TGG 0.462695 2:-41287115 MsG0280008899.01.T01:CDS
GGAAGTCCATTTGGTTCTAA+GGG 0.467978 2:-41287106 MsG0280008899.01.T01:CDS
GGCCACTTTACTTTCACCAT+TGG 0.477134 2:-41285908 MsG0280008899.01.T01:intron
GAATCTTATGTATGGAATGA+TGG 0.480663 2:+41287207 None:intergenic
AAATATTCCTAAGTTCCCCT+TGG 0.494028 2:-41286361 MsG0280008899.01.T01:CDS
AATGTTGCAATTGTTGGGGC+AGG 0.496768 2:-41287466 MsG0280008899.01.T01:CDS
CTCATGAAGAAATGAAGTCA+TGG 0.511087 2:-41287147 MsG0280008899.01.T01:CDS
ATATCTCTACATGTCGAGCT+GGG 0.514908 2:-41284778 MsG0280008899.01.T01:CDS
AGCTGCCACTGAAGAAGTAC+GGG 0.515558 2:-41284829 MsG0280008899.01.T01:CDS
GAAATTCTTAGTATCTTCTA+CGG 0.519004 2:+41287069 None:intergenic
GATATCTCTACATGTCGAGC+TGG 0.519980 2:-41284779 MsG0280008899.01.T01:CDS
AAGTGGCCACAAGGCTAAGT+AGG 0.524274 2:+41285923 None:intergenic
GGATAAACATGCACGTGAGT+TGG 0.524654 2:+41284197 None:intergenic
CTAAGTAGGAATGGTTCTCC+AGG 0.528761 2:+41285937 None:intergenic
GAATCTGATGATGGCATTGG+TGG 0.530274 2:-41287382 MsG0280008899.01.T01:CDS
AAGCTGCCACTGAAGAAGTA+CGG 0.532930 2:-41284830 MsG0280008899.01.T01:CDS
CAAGTTCCCTTAGAACCAAA+TGG 0.541301 2:+41287100 None:intergenic
TTCTAATTCTACTCCTCTCT+AGG 0.545779 2:+41284146 None:intergenic
ATTGTCTACGAATCTGATGA+TGG 0.545835 2:-41287391 MsG0280008899.01.T01:CDS
ATTGTTGGGGCAGGAATAAG+TGG 0.555531 2:-41287457 MsG0280008899.01.T01:CDS
CAATTCATATTTACATACCT+CGG 0.556023 2:+41287042 None:intergenic
CATTGATATTGATTATGTTG+GGG 0.562755 2:-41287173 MsG0280008899.01.T01:CDS
TCATGAAGAAATGAAGTCAT+GGG 0.573176 2:-41287146 MsG0280008899.01.T01:CDS
GCTGAATGTGCAAATGCAAA+TGG 0.573735 2:-41286200 MsG0280008899.01.T01:intron
TACCAATGGTGAAAGTAAAG+TGG 0.578127 2:+41285906 None:intergenic
GCCACAAGGCTAAGTAGGAA+TGG 0.579646 2:+41285928 None:intergenic
GCCACTGAAGAAGTACGGGC+TGG 0.586016 2:-41284825 MsG0280008899.01.T01:CDS
CATAGTCAAATTTCCTAGAG+AGG 0.588596 2:-41284159 MsG0280008899.01.T01:CDS
GTACTAAAAGCTCCGCAAAA+CGG 0.593919 2:+41285965 None:intergenic
GAGTTACAATAGTAGGCTCA+GGG 0.602052 2:-41286244 MsG0280008899.01.T01:CDS
ACCATTCCTACTTAGCCTTG+TGG 0.606013 2:-41285929 MsG0280008899.01.T01:CDS
TACGAATCTGATGATGGCAT+TGG 0.612809 2:-41287385 MsG0280008899.01.T01:CDS
GTGAAAGTAAAGTGGCCACA+AGG 0.620197 2:+41285914 None:intergenic
TTTGTAAATTCAGGTTCACA+AGG 0.623646 2:-41286427 MsG0280008899.01.T01:intron
GTTCTTTGGATAATTGTGCA+AGG 0.631927 2:+41286051 None:intergenic
ACCAGCCCGTACTTCTTCAG+TGG 0.637602 2:+41284824 None:intergenic
TATCTCTACATGTCGAGCTG+GGG 0.655759 2:-41284777 MsG0280008899.01.T01:intron
AAGTCATGGGAATTATGGAG+TGG 0.662418 2:-41287133 MsG0280008899.01.T01:CDS
TTCATATTTACATACCTCGG+TGG 0.678741 2:+41287045 None:intergenic
TTATCCAAAGAACTACACAC+TGG 0.687255 2:-41286041 MsG0280008899.01.T01:CDS
ACTATGGTATTGGTGAAACG+GGG 0.719893 2:+41284176 None:intergenic
TACTAAGAATTTCACCACCG+AGG 0.721507 2:-41287059 MsG0280008899.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTAATAAAAATAAA+AGG + Chr2:41286573-41286592 None:intergenic 0.0%
!! ATCATTTAGTTAATTAAATA+TGG - Chr2:41287274-41287293 MsG0280008899.01.T01:CDS 10.0%
!! TCATTTAGTTAATTAAATAT+GGG - Chr2:41287275-41287294 MsG0280008899.01.T01:CDS 10.0%
!!! ATAAATATTTAATTAGCTTA+AGG - Chr2:41285118-41285137 MsG0280008899.01.T01:intron 10.0%
!!! ATTATTAATTTTTTAGAGAA+CGG - Chr2:41286741-41286760 MsG0280008899.01.T01:intron 10.0%
!!! TTCCTTTTTTTTTTTTTTAT+GGG + Chr2:41285152-41285171 None:intergenic 10.0%
!!! TTTAAGACAAATTTTATAAT+GGG - Chr2:41284799-41284818 MsG0280008899.01.T01:CDS 10.0%
!!! TTTCCTTTTTTTTTTTTTTA+TGG + Chr2:41285153-41285172 None:intergenic 10.0%
!!! TTTTTTAATATTGTTAATCT+TGG - Chr2:41286142-41286161 MsG0280008899.01.T01:intron 10.0%
!!! TTTTTTGACAAAATAATAAA+AGG - Chr2:41286889-41286908 MsG0280008899.01.T01:intron 10.0%
!!! TTTTTTTATTCAAAATTTGA+AGG - Chr2:41284948-41284967 MsG0280008899.01.T01:intron 10.0%
!! AATATATGTAAAAGTTTACA+TGG - Chr2:41286196-41286215 MsG0280008899.01.T01:intron 15.0%
!! ATAAAAATAAAACAAGATTG+AGG + Chr2:41286346-41286365 None:intergenic 15.0%
!! TAAAAATAAAACAAGATTGA+GGG + Chr2:41286345-41286364 None:intergenic 15.0%
!! TTCCCATAAAAAAAAAAAAA+AGG - Chr2:41285147-41285166 MsG0280008899.01.T01:intron 15.0%
!!! GTTGATATAATTTTGAAATA+TGG + Chr2:41287064-41287083 None:intergenic 15.0%
!!! GTTTAAGACAAATTTTATAA+TGG - Chr2:41284798-41284817 MsG0280008899.01.T01:CDS 15.0%
!!! TAGTAAATTTTTATCTATCT+TGG - Chr2:41286370-41286389 MsG0280008899.01.T01:CDS 15.0%
!!! TTATTAATTTTTTAGAGAAC+GGG - Chr2:41286742-41286761 MsG0280008899.01.T01:intron 15.0%
!!! TTCATATTTTTTTCTTGTTT+GGG - Chr2:41284659-41284678 MsG0280008899.01.T01:intron 15.0%
!!! TTTCATATTTTTTTCTTGTT+TGG - Chr2:41284658-41284677 MsG0280008899.01.T01:intron 15.0%
!!! TTTCTTTTTCTTTTTCATTT+TGG - Chr2:41284631-41284650 MsG0280008899.01.T01:intron 15.0%
!! AAAAAAATGTTGCAATTGTT+GGG - Chr2:41284158-41284177 MsG0280008899.01.T01:CDS 20.0%
!! ATAATCAATATCAATGACTT+TGG + Chr2:41284452-41284471 None:intergenic 20.0%
!! GATCTATATGATATAAGTTT+CGG + Chr2:41286068-41286087 None:intergenic 20.0%
!! GTTTGAATATTTGTAAATTC+AGG - Chr2:41285193-41285212 MsG0280008899.01.T01:intron 20.0%
!! TCATTTCTCTAATAATAAAG+CGG - Chr2:41285976-41285995 MsG0280008899.01.T01:CDS 20.0%
!! TTGTGATTTCTTTATATTGA+TGG + Chr2:41286917-41286936 None:intergenic 20.0%
!! TTGTTGAAACATATTTGAAA+TGG - Chr2:41286776-41286795 MsG0280008899.01.T01:intron 20.0%
!! TTTAATATTGTTAATCTTGG+TGG - Chr2:41286145-41286164 MsG0280008899.01.T01:intron 20.0%
!!! ATTTTGTCAAAAAAATGATC+AGG + Chr2:41286883-41286902 None:intergenic 20.0%
!!! TCATTGATATTGATTATGTT+GGG - Chr2:41284455-41284474 MsG0280008899.01.T01:intron 20.0%
! AAAAAATGTTGCAATTGTTG+GGG - Chr2:41284159-41284178 MsG0280008899.01.T01:CDS 25.0%
! AAAGAAGGTTTAACCATTAA+TGG - Chr2:41286952-41286971 MsG0280008899.01.T01:intron 25.0%
! AAGAAAAAATCAAATTGCAG+TGG - Chr2:41284728-41284747 MsG0280008899.01.T01:intron 25.0%
! ACTACACAAATAAACATGAA+AGG + Chr2:41285027-41285046 None:intergenic 25.0%
! ATGTATGTTACAGTGTTAAA+TGG - Chr2:41287405-41287424 MsG0280008899.01.T01:CDS 25.0%
! ATGTTTATTTGTGTAGTTGT+TGG - Chr2:41285030-41285049 MsG0280008899.01.T01:intron 25.0%
! ATTAGTTAGATTCTTCTTAG+GGG + Chr2:41286527-41286546 None:intergenic 25.0%
! ATTTATTCACGTGTATAGTA+TGG + Chr2:41285079-41285098 None:intergenic 25.0%
! CAATTCATATTTACATACCT+CGG + Chr2:41284590-41284609 None:intergenic 25.0%
! CTACACAAATAAACATGAAA+GGG + Chr2:41285026-41285045 None:intergenic 25.0%
! GAAAAAAATGTTGCAATTGT+TGG - Chr2:41284157-41284176 MsG0280008899.01.T01:CDS 25.0%
! GAAATTCTTAGTATCTTCTA+CGG + Chr2:41284563-41284582 None:intergenic 25.0%
! TTGGAATTGAATCTTATGTA+TGG + Chr2:41284433-41284452 None:intergenic 25.0%
!! AGATTAGTTAGATTCTTCTT+AGG + Chr2:41286529-41286548 None:intergenic 25.0%
!! ATTTTTATCTATCTTGGAGT+TGG - Chr2:41286376-41286395 MsG0280008899.01.T01:CDS 25.0%
!! CATTGATATTGATTATGTTG+GGG - Chr2:41284456-41284475 MsG0280008899.01.T01:intron 25.0%
!! GATTAGTTAGATTCTTCTTA+GGG + Chr2:41286528-41286547 None:intergenic 25.0%
!! GTCATTGATATTGATTATGT+TGG - Chr2:41284454-41284473 MsG0280008899.01.T01:intron 25.0%
!!! AACCACTTTTTGATAACTTT+TGG + Chr2:41285947-41285966 None:intergenic 25.0%
!!! AACTTTACCTTTAAGATTTC+TGG + Chr2:41285301-41285320 None:intergenic 25.0%
!!! ACTTTACCTTTAAGATTTCT+GGG + Chr2:41285300-41285319 None:intergenic 25.0%
!!! ATATTTTGACATCCATTTGA+TGG - Chr2:41285809-41285828 MsG0280008899.01.T01:intron 25.0%
!!! ATTGACTTTTCAAGAGAAAA+TGG - Chr2:41287145-41287164 MsG0280008899.01.T01:CDS 25.0%
AAAAAATCAAATTGCAGTGG+TGG - Chr2:41284731-41284750 MsG0280008899.01.T01:intron 30.0%
AAAATTGCAACATGTACATG+CGG + Chr2:41287338-41287357 None:intergenic 30.0%
AAATGAAGTCATGGGAATTA+TGG - Chr2:41284491-41284510 MsG0280008899.01.T01:intron 30.0%
AACAAGAGAGTTACAATAGT+AGG - Chr2:41285378-41285397 MsG0280008899.01.T01:intron 30.0%
AAGTTTGTCATTCTTTGCAT+TGG - Chr2:41285227-41285246 MsG0280008899.01.T01:intron 30.0%
AATTTGTAGAGCATATTTGC+AGG + Chr2:41284206-41284225 None:intergenic 30.0%
AGGAAATTTGACTATGGTAT+TGG + Chr2:41287466-41287485 None:intergenic 30.0%
AGGTAAAGTTATGCATTCTT+TGG - Chr2:41285311-41285330 MsG0280008899.01.T01:intron 30.0%
AGTAAGAAGTGAGAAAAACA+AGG + Chr2:41285850-41285869 None:intergenic 30.0%
ATAAAGGTGACCAAAAACTT+AGG - Chr2:41287022-41287041 MsG0280008899.01.T01:intron 30.0%
CTCTATACACTGTACAATTA+TGG + Chr2:41285470-41285489 None:intergenic 30.0%
GAAGAATCTAACTAATCTCT+AGG - Chr2:41286531-41286550 MsG0280008899.01.T01:intron 30.0%
GAATCTTATGTATGGAATGA+TGG + Chr2:41284425-41284444 None:intergenic 30.0%
GTAGTAATAGATCTTACCAA+TGG + Chr2:41285740-41285759 None:intergenic 30.0%
GTATATACAAACCTGTAGAT+AGG + Chr2:41287108-41287127 None:intergenic 30.0%
GTCCAAAAGTTATCAAAAAG+TGG - Chr2:41285942-41285961 MsG0280008899.01.T01:CDS 30.0%
TAAAACAAGATTGAGGGATT+AGG + Chr2:41286339-41286358 None:intergenic 30.0%
TCAACAAAATTGCCATCAAA+TGG + Chr2:41285824-41285843 None:intergenic 30.0%
TCATGAAGAAATGAAGTCAT+GGG - Chr2:41284483-41284502 MsG0280008899.01.T01:intron 30.0%
TCTTGAAGAAAACTGTAATC+AGG + Chr2:41286832-41286851 None:intergenic 30.0%
TGCAAATATGCTCTACAAAT+TGG - Chr2:41284205-41284224 MsG0280008899.01.T01:CDS 30.0%
TTAATGAACTTCACCAAAAG+AGG + Chr2:41287244-41287263 None:intergenic 30.0%
TTCTTACTGGTCAAAAACAA+TGG - Chr2:41285862-41285881 MsG0280008899.01.T01:intron 30.0%
! AATCAATTTTTCACCGCTAT+AGG - Chr2:41285545-41285564 MsG0280008899.01.T01:intron 30.0%
! AATGTAAGCATATTTCTGCT+TGG + Chr2:41287382-41287401 None:intergenic 30.0%
! CTTATATTTCAACCGTTTTG+CGG - Chr2:41285652-41285671 MsG0280008899.01.T01:intron 30.0%
! GAAGGTTTAAAACCCTAATT+TGG - Chr2:41284966-41284985 MsG0280008899.01.T01:intron 30.0%
! TATTTTATGTTTGCTCACTG+TGG - Chr2:41286591-41286610 MsG0280008899.01.T01:intron 30.0%
! TCTTTTATAGAAGAATCCCA+TGG + Chr2:41284343-41284362 None:intergenic 30.0%
! TGAATATGCTCCTAAGTTTT+TGG + Chr2:41287035-41287054 None:intergenic 30.0%
! TTGTTTGTTAGTTTGGAGTT+TGG + Chr2:41284299-41284318 None:intergenic 30.0%
! TTTGTAAATTCAGGTTCACA+AGG - Chr2:41285202-41285221 MsG0280008899.01.T01:intron 30.0%
!! AAATGTTTCTCTAGCTTTGT+TGG + Chr2:41284875-41284894 None:intergenic 30.0%
!! CGACTCGGTAAAATAATTAT+TGG + Chr2:41287198-41287217 None:intergenic 30.0%
!! TTGTTTTTCTCACTTCTTAC+TGG - Chr2:41285849-41285868 MsG0280008899.01.T01:intron 30.0%
AAAAACGCATAACCCTTGAT+TGG + Chr2:41286124-41286143 None:intergenic 35.0%
AAAAGGCCCAGAAATCTTAA+AGG - Chr2:41285291-41285310 MsG0280008899.01.T01:intron 35.0%
AAACCCTAATTTGGATTGCT+TGG - Chr2:41284975-41284994 MsG0280008899.01.T01:intron 35.0%
AAATATTCCTAAGTTCCCCT+TGG - Chr2:41285268-41285287 MsG0280008899.01.T01:intron 35.0%
AAATTGCAACATGTACATGC+GGG + Chr2:41287337-41287356 None:intergenic 35.0%
AAGGGGAACTTAGGAATATT+TGG + Chr2:41285269-41285288 None:intergenic 35.0%
AATAACTAGGTCAGCTTCTT+GGG + Chr2:41286989-41287008 None:intergenic 35.0%
ATATGGGATCTCAAACTAGT+TGG - Chr2:41286619-41286638 MsG0280008899.01.T01:intron 35.0%
ATGCTGAAGCAATAGAATAG+AGG + Chr2:41286654-41286673 None:intergenic 35.0%
ATTGTCTACGAATCTGATGA+TGG - Chr2:41284238-41284257 MsG0280008899.01.T01:CDS 35.0%
CACAAATAAACATGAAAGGG+AGG + Chr2:41285023-41285042 None:intergenic 35.0%
CATAGTCAAATTTCCTAGAG+AGG - Chr2:41287470-41287489 MsG0280008899.01.T01:CDS 35.0%
CTCATGAAGAAATGAAGTCA+TGG - Chr2:41284482-41284501 MsG0280008899.01.T01:intron 35.0%
GATGGAAAAATGTTGAGCAT+AGG + Chr2:41284407-41284426 None:intergenic 35.0%
GCTAGAGAAACATTTGTAGT+TGG - Chr2:41284880-41284899 MsG0280008899.01.T01:intron 35.0%
GTAACATTACATCGCTGTAT+TGG - Chr2:41286298-41286317 MsG0280008899.01.T01:CDS 35.0%
GTATAGTATGGTGTTCGATA+AGG + Chr2:41285067-41285086 None:intergenic 35.0%
GTTCTTTGGATAATTGTGCA+AGG + Chr2:41285581-41285600 None:intergenic 35.0%
TACCAATGGTGAAAGTAAAG+TGG + Chr2:41285726-41285745 None:intergenic 35.0%
TCATCAGATTCGTAGACAAT+TGG + Chr2:41284238-41284257 None:intergenic 35.0%
TCTTAAACCTCCAAACATGT+TGG + Chr2:41284786-41284805 None:intergenic 35.0%
TGAAGCAATAGAATAGAGGA+AGG + Chr2:41286650-41286669 None:intergenic 35.0%
TGGTGTTCGATAAGGTAAAA+TGG + Chr2:41285059-41285078 None:intergenic 35.0%
TTATCCAAAGAACTACACAC+TGG - Chr2:41285588-41285607 MsG0280008899.01.T01:intron 35.0%
TTCATATTTACATACCTCGG+TGG + Chr2:41284587-41284606 None:intergenic 35.0%
TTCTTAGACTCACCAATCAA+GGG - Chr2:41286109-41286128 MsG0280008899.01.T01:intron 35.0%
TTTCTTAGACTCACCAATCA+AGG - Chr2:41286108-41286127 MsG0280008899.01.T01:intron 35.0%
! CCAGTTTACAGATTTTCCAT+GGG - Chr2:41284324-41284343 MsG0280008899.01.T01:intron 35.0%
! CTCTCTAGGAAATTTGACTA+TGG + Chr2:41287472-41287491 None:intergenic 35.0%
! CTTTGCATTGGAAAGTATAG+TGG - Chr2:41285239-41285258 MsG0280008899.01.T01:intron 35.0%
! TCCAGTTTACAGATTTTCCA+TGG - Chr2:41284323-41284342 MsG0280008899.01.T01:intron 35.0%
! TCTTGCACTTGTTGATTACT+TGG + Chr2:41284373-41284392 None:intergenic 35.0%
!! AGCTTTGTTGGTTAGAAAGA+AGG + Chr2:41284863-41284882 None:intergenic 35.0%
!! GGAAGTCTTGTTTGTTAGTT+TGG + Chr2:41284306-41284325 None:intergenic 35.0%
!! TCTTCCAGATTTTGACATTG+CGG - Chr2:41285613-41285632 MsG0280008899.01.T01:intron 35.0%
!! TGACTATGGTATTGGTGAAA+CGG + Chr2:41287458-41287477 None:intergenic 35.0%
!!! TGTATTGGTTCGTAGGATTT+TGG - Chr2:41286313-41286332 MsG0280008899.01.T01:CDS 35.0%
AAGTCATGGGAATTATGGAG+TGG - Chr2:41284496-41284515 MsG0280008899.01.T01:intron 40.0%
AGAGTTACAATAGTAGGCTC+AGG - Chr2:41285384-41285403 MsG0280008899.01.T01:intron 40.0%
ATAACTAGGTCAGCTTCTTG+GGG + Chr2:41286988-41287007 None:intergenic 40.0%
ATATCTCTACATGTCGAGCT+GGG - Chr2:41286851-41286870 MsG0280008899.01.T01:intron 40.0%
ATTCTTGCCACGGGATATAA+AGG - Chr2:41287006-41287025 MsG0280008899.01.T01:intron 40.0%
CAAGTTCCCTTAGAACCAAA+TGG + Chr2:41284532-41284551 None:intergenic 40.0%
CAGTGGTGGTTAGAACTATT+CGG - Chr2:41284745-41284764 MsG0280008899.01.T01:intron 40.0%
CCCATGGAAAATCTGTAAAC+TGG + Chr2:41284327-41284346 None:intergenic 40.0%
GAAACCAGTGTGTAGTTCTT+TGG + Chr2:41285595-41285614 None:intergenic 40.0%
GAATAACTAGGTCAGCTTCT+TGG + Chr2:41286990-41287009 None:intergenic 40.0%
GAGTTACAATAGTAGGCTCA+GGG - Chr2:41285385-41285404 MsG0280008899.01.T01:intron 40.0%
GCTCACTGTGGTTGTTATAT+GGG - Chr2:41286603-41286622 MsG0280008899.01.T01:intron 40.0%
GCTGAATGTGCAAATGCAAA+TGG - Chr2:41285429-41285448 MsG0280008899.01.T01:intron 40.0%
GGAAGAATCACATTTCGACT+CGG + Chr2:41287213-41287232 None:intergenic 40.0%
GGGCTTATCTTCTCCATTAA+TGG + Chr2:41286968-41286987 None:intergenic 40.0%
GTACTAAAAGCTCCGCAAAA+CGG + Chr2:41285667-41285686 None:intergenic 40.0%
TACTAAGAATTTCACCACCG+AGG - Chr2:41284570-41284589 MsG0280008899.01.T01:intron 40.0%
TAGAACTATTCGGACTCACA+TGG - Chr2:41284755-41284774 MsG0280008899.01.T01:intron 40.0%
TCACCAAAAGAGGAATCGTT+TGG + Chr2:41287234-41287253 None:intergenic 40.0%
TGACCTAGTTATTCTTGCCA+CGG - Chr2:41286996-41287015 MsG0280008899.01.T01:intron 40.0%
TGCTCACTGTGGTTGTTATA+TGG - Chr2:41286602-41286621 MsG0280008899.01.T01:intron 40.0%
TGGGAATTATGGAGTGGTAA+TGG - Chr2:41284502-41284521 MsG0280008899.01.T01:intron 40.0%
! AGCTTTAGCTTCTGCAAAGA+AGG - Chr2:41286937-41286956 MsG0280008899.01.T01:intron 40.0%
! CTTCCAAACGATTCCTCTTT+TGG - Chr2:41287228-41287247 MsG0280008899.01.T01:CDS 40.0%
!! ACTATGGTATTGGTGAAACG+GGG + Chr2:41287456-41287475 None:intergenic 40.0%
!! AGTGGTAATGGAAGTCCATT+TGG - Chr2:41284514-41284533 MsG0280008899.01.T01:intron 40.0%
!! ATGATGGCATTGGTGGAATA+TGG - Chr2:41284254-41284273 MsG0280008899.01.T01:intron 40.0%
!! CATTTGGTTCTAAGGGAACT+TGG - Chr2:41284530-41284549 MsG0280008899.01.T01:intron 40.0%
!! CTTCCAGATTTTGACATTGC+GGG - Chr2:41285614-41285633 MsG0280008899.01.T01:intron 40.0%
!! GACTATGGTATTGGTGAAAC+GGG + Chr2:41287457-41287476 None:intergenic 40.0%
!! GGAAGTCCATTTGGTTCTAA+GGG - Chr2:41284523-41284542 MsG0280008899.01.T01:intron 40.0%
!! TACGAATCTGATGATGGCAT+TGG - Chr2:41284244-41284263 MsG0280008899.01.T01:CDS 40.0%
!! TGGAAGTCCATTTGGTTCTA+AGG - Chr2:41284522-41284541 MsG0280008899.01.T01:intron 40.0%
AACCTCCAAACATGTTGGAC+CGG + Chr2:41284781-41284800 None:intergenic 45.0%
AAGCTGCCACTGAAGAAGTA+CGG - Chr2:41286799-41286818 MsG0280008899.01.T01:intron 45.0%
AATGTTGCAATTGTTGGGGC+AGG - Chr2:41284163-41284182 MsG0280008899.01.T01:CDS 45.0%
ACTCAACGGTTCCTATCTAC+AGG - Chr2:41287094-41287113 MsG0280008899.01.T01:CDS 45.0%
AGGATGAGTGACTCCTATAG+CGG + Chr2:41285561-41285580 None:intergenic 45.0%
ATCCCGTGGCAAGAATAACT+AGG + Chr2:41287002-41287021 None:intergenic 45.0%
ATGAAAGGGAGGTCGTGTTA+TGG + Chr2:41285012-41285031 None:intergenic 45.0%
ATGCCCGCAATGTCAAAATC+TGG + Chr2:41285620-41285639 None:intergenic 45.0%
ATTGTTGGGGCAGGAATAAG+TGG - Chr2:41284172-41284191 MsG0280008899.01.T01:CDS 45.0%
CAACGAATCAGCAGACTCAA+CGG - Chr2:41287080-41287099 MsG0280008899.01.T01:CDS 45.0%
CTAAGTAGGAATGGTTCTCC+AGG + Chr2:41285695-41285714 None:intergenic 45.0%
GACATTGCGGGCATTAATCT+TGG - Chr2:41285626-41285645 MsG0280008899.01.T01:intron 45.0%
GACCTAGTTATTCTTGCCAC+GGG - Chr2:41286997-41287016 MsG0280008899.01.T01:intron 45.0%
GATATCTCTACATGTCGAGC+TGG - Chr2:41286850-41286869 MsG0280008899.01.T01:intron 45.0%
GGATAAACATGCACGTGAGT+TGG + Chr2:41287435-41287454 None:intergenic 45.0%
GGGCCAAGCAATCCAAATTA+GGG + Chr2:41284981-41285000 None:intergenic 45.0%
GTGAAAGTAAAGTGGCCACA+AGG + Chr2:41285718-41285737 None:intergenic 45.0%
TATCTCTACATGTCGAGCTG+GGG - Chr2:41286852-41286871 MsG0280008899.01.T01:intron 45.0%
TCCTAAGTTCCCCTTGGAAA+AGG - Chr2:41285274-41285293 MsG0280008899.01.T01:intron 45.0%
TGAAAGGGAGGTCGTGTTAT+GGG + Chr2:41285011-41285030 None:intergenic 45.0%
TTGGTCACCTTTATATCCCG+TGG + Chr2:41287016-41287035 None:intergenic 45.0%
! GAGCTTTTAGTACACAAGCC+TGG - Chr2:41285674-41285693 MsG0280008899.01.T01:intron 45.0%
! GGCCACTTTACTTTCACCAT+TGG - Chr2:41285721-41285740 MsG0280008899.01.T01:intron 45.0%
!! ACATCGCTGTATTGGTTCGT+AGG - Chr2:41286306-41286325 MsG0280008899.01.T01:CDS 45.0%
!! ACCATTCCTACTTAGCCTTG+TGG - Chr2:41285700-41285719 MsG0280008899.01.T01:intron 45.0%
!! AGATTTCTGGGCCTTTTCCA+AGG + Chr2:41285288-41285307 None:intergenic 45.0%
!! AGCTGCAGTCTTGTTGTCTA+AGG + Chr2:41285346-41285365 None:intergenic 45.0%
!! ATTTCTGGGCCTTTTCCAAG+GGG + Chr2:41285286-41285305 None:intergenic 45.0%
!! GAATCTGATGATGGCATTGG+TGG - Chr2:41284247-41284266 MsG0280008899.01.T01:intron 45.0%
!! GATTTCTGGGCCTTTTCCAA+GGG + Chr2:41285287-41285306 None:intergenic 45.0%
!!! ATTTTTTCATTTATTTTATA+AGG + Chr2:41284826-41284845 None:intergenic 5.0%
AAGTGGCCACAAGGCTAAGT+AGG + Chr2:41285709-41285728 None:intergenic 50.0%
ACTATTCGGACTCACATGGC+CGG - Chr2:41284759-41284778 MsG0280008899.01.T01:intron 50.0%
AGGTCGTGTTATGGGTTCGT+TGG + Chr2:41285003-41285022 None:intergenic 50.0%
GCCACAAGGCTAAGTAGGAA+TGG + Chr2:41285704-41285723 None:intergenic 50.0%
GGGGCCAAGCAATCCAAATT+AGG + Chr2:41284982-41285001 None:intergenic 50.0%
GGTCGTGTTATGGGTTCGTT+GGG + Chr2:41285002-41285021 None:intergenic 50.0%
GTCGTGTTATGGGTTCGTTG+GGG + Chr2:41285001-41285020 None:intergenic 50.0%
! AGCTGCCACTGAAGAAGTAC+GGG - Chr2:41286800-41286819 MsG0280008899.01.T01:intron 50.0%
! GCCTTTTCCAAGGGGAACTT+AGG + Chr2:41285278-41285297 None:intergenic 50.0%
ACCAGCCCGTACTTCTTCAG+TGG + Chr2:41286808-41286827 None:intergenic 55.0%
CATGGCCGGTCCAACATGTT+TGG - Chr2:41284773-41284792 MsG0280008899.01.T01:intron 55.0%
GGCCGGTCCAACATGTTTGG+AGG - Chr2:41284776-41284795 MsG0280008899.01.T01:intron 60.0%
! GCCACTGAAGAAGTACGGGC+TGG - Chr2:41286804-41286823 MsG0280008899.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 41284154 41287497 41284154 ID=MsG0280008899.01;Name=MsG0280008899.01
Chr2 mRNA 41284154 41287497 41284154 ID=MsG0280008899.01.T01;Parent=MsG0280008899.01;Name=MsG0280008899.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0|0.8|1|1|5|0|364
Chr2 exon 41287043 41287497 41287043 ID=MsG0280008899.01.T01:exon:29951;Parent=MsG0280008899.01.T01
Chr2 exon 41286201 41286436 41286201 ID=MsG0280008899.01.T01:exon:29952;Parent=MsG0280008899.01.T01
Chr2 exon 41285909 41286084 41285909 ID=MsG0280008899.01.T01:exon:29953;Parent=MsG0280008899.01.T01
Chr2 exon 41284778 41284894 41284778 ID=MsG0280008899.01.T01:exon:29954;Parent=MsG0280008899.01.T01
Chr2 exon 41284154 41284264 41284154 ID=MsG0280008899.01.T01:exon:29955;Parent=MsG0280008899.01.T01
Chr2 CDS 41287043 41287497 41287043 ID=MsG0280008899.01.T01:cds;Parent=MsG0280008899.01.T01
Chr2 CDS 41286201 41286436 41286201 ID=MsG0280008899.01.T01:cds;Parent=MsG0280008899.01.T01
Chr2 CDS 41285909 41286084 41285909 ID=MsG0280008899.01.T01:cds;Parent=MsG0280008899.01.T01
Chr2 CDS 41284778 41284894 41284778 ID=MsG0280008899.01.T01:cds;Parent=MsG0280008899.01.T01
Chr2 CDS 41284154 41284264 41284154 ID=MsG0280008899.01.T01:cds;Parent=MsG0280008899.01.T01
Gene Sequence

>MsG0280008899.01.T01

ATGGAAAAAAATGTTGCAATTGTTGGGGCAGGAATAAGTGGTATACTTGCCTGCAAATATGCTCTACAAATTGGTTTTCATCCAATTGTCTACGAATCTGATGATGGCATTGGTGGAATATGGAGACATACTATTCAGTCTACCAAACTCCAAACTAACAAACAAGACTTCCAGTTTACAGATTTTCCATGGGATTCTTCTATAAAAGAAGATTTTCCAAGTAATCAACAAGTGCAAGATTATCTTAACTCCTATGCTCAACATTTTTCCATCATTCCATACATAAGATTCAATTCCAAAGTCATTGATATTGATTATGTTGGGGAGTCTCATGAAGAAATGAAGTCATGGGAATTATGGAGTGGTAATGGAAGTCCATTTGGTTCTAAGGGAACTTGGCATCTAACCGTAGAAGATACTAAGAATTTCACCACCGAGGTATGTAAATATGAATTGTTCACAAGGCTAAGTTTGTCATTCTTTGCATTGGAAAGTATAGTGGCTTTCCAAATATTCCTAAGTTCCCCTTGGAAAAGGCCCAGAAATCTTAAAGGTAAAGTTATGCATTCTTTGGATTATTCTGCCTTAGACAACAAGACTGCAGCTGAAATGATAAAAAACAAGAGAGTTACAATAGTAGGCTCAGGGAAATCTGCTTTTGATATTGCTGCTGAATGTGCAAATGCAAATGGAGTCACTCATCCTTGCACAATTATCCAAAGAACTACACACTGGTTTCTTCCAGATTTTGACATTGCGGGCATTAATCTTGGATACTTATATTTCAACCGTTTTGCGGAGCTTTTAGTACACAAGCCTGGAGAACCATTCCTACTTAGCCTTGTGGCCACTTTACTTTCACCATTGAGAACGGGAATTTCAAAACTTGTTGAAACATATTTGAAATGGAAGCTGCCACTGAAGAAGTACGGGCTGGTACCTGATTACAGTTTTCTTCAAGATATCTCTACATGTCGAGCTGGGAAATATGCTTACATTGTCATGTATGTTACAGTGTTAAATGGATTTCCAACTCACGTGCATGTTTATCCCCGTTTCACCAATACCATAGTCAAATTTCCTAGAGAGGAGTAG

Protein sequence

>MsG0280008899.01.T01

MEKNVAIVGAGISGILACKYALQIGFHPIVYESDDGIGGIWRHTIQSTKLQTNKQDFQFTDFPWDSSIKEDFPSNQQVQDYLNSYAQHFSIIPYIRFNSKVIDIDYVGESHEEMKSWELWSGNGSPFGSKGTWHLTVEDTKNFTTEVCKYELFTRLSLSFFALESIVAFQIFLSSPWKRPRNLKGKVMHSLDYSALDNKTAAEMIKNKRVTIVGSGKSAFDIAAECANANGVTHPCTIIQRTTHWFLPDFDIAGINLGYLYFNRFAELLVHKPGEPFLLSLVATLLSPLRTGISKLVETYLKWKLPLKKYGLVPDYSFLQDISTCRAGKYAYIVMYVTVLNGFPTHVHVYPRFTNTIVKFPREE*