AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023779.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023779.01.T01 MTR_8g102050 97.993 548 11 0 14 561 4 551 0.0 1114
MsG0480023779.01.T01 MTR_7g101050 88.774 579 44 7 1 561 1 576 0.0 1028
MsG0480023779.01.T01 MTR_8g011530 46.369 537 280 5 25 560 103 632 1.78e-169 495
MsG0480023779.01.T01 MTR_4g100920 48.502 534 202 9 33 561 81 546 3.64e-167 486
MsG0480023779.01.T01 MTR_4g100920 61.453 179 65 2 279 456 266 441 6.56e-69 229
MsG0480023779.01.T01 MTR_4g100920 47.159 176 85 4 33 204 81 252 5.36e-43 160
MsG0480023779.01.T01 MTR_1g014140 30.605 281 175 8 285 558 271 538 1.21e-27 117
MsG0480023779.01.T01 MTR_5g028360 30.605 281 175 9 285 558 319 586 1.88e-27 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023779.01.T01 AT5G56680 73.866 551 142 1 13 561 22 572 0.0 879
MsG0480023779.01.T01 AT1G70980 72.152 553 147 4 13 561 22 571 0.0 842
MsG0480023779.01.T01 AT4G17300 46.995 549 219 9 18 561 86 567 7.30e-167 486
MsG0480023779.01.T01 AT4G17300 46.995 549 219 9 18 561 106 587 8.99e-167 486
MsG0480023779.01.T01 AT3G07420 47.628 506 251 7 61 560 140 637 1.16e-165 485
MsG0480023779.01.T01 AT3G07420 44.935 385 198 7 61 439 140 516 5.58e-109 337
MsG0480023779.01.T01 AT4G31180 31.317 281 173 8 285 558 288 555 2.39e-28 119
MsG0480023779.01.T01 AT4G31180 31.317 281 173 8 285 558 288 555 2.39e-28 119
MsG0480023779.01.T01 AT1G68420 63.636 77 28 0 315 391 1 77 5.24e-28 107
MsG0480023779.01.T01 AT4G26870 29.242 277 176 9 285 554 262 525 3.41e-26 112
MsG0480023779.01.T01 AT5G38750 35.570 149 51 5 26 169 19 127 2.28e-15 73.6

Find 159 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAGGATATGGAATTTA+TGG 0.136941 4:+89679853 MsG0480023779.01.T01:CDS
TCGAAACGCAATTTCGTATT+AGG 0.142045 4:+89677982 MsG0480023779.01.T01:five_prime_UTR
CCAGGCATTTGGCTGAATTT+TGG 0.190908 4:+89679478 MsG0480023779.01.T01:CDS
TTGATTCAATGAATTATATT+TGG 0.200312 4:+89681273 MsG0480023779.01.T01:three_prime_UTR
TAGAATGCTTTGATTTCTTT+TGG 0.211540 4:-89680294 None:intergenic
TTTCAGGTTGGAGAGTTAAT+TGG 0.238466 4:+89680643 MsG0480023779.01.T01:intron
AATTTGAGAAAGAAGTAAAA+TGG 0.264571 4:+89679996 MsG0480023779.01.T01:CDS
CCTCGGTTACGGTGGATAAT+TGG 0.276758 4:-89678088 None:intergenic
AGCTGCTAAGCTTGTTGTTC+AGG 0.277489 4:+89679161 MsG0480023779.01.T01:CDS
TGACAACTGCCTTGAGGATA+TGG 0.287783 4:+89679844 MsG0480023779.01.T01:CDS
GAAGCTTACCGTGTTGGTTC+TGG 0.296078 4:-89678519 None:intergenic
TTCAGGTTGGAGAGTTAATT+GGG 0.300812 4:+89680644 MsG0480023779.01.T01:intron
CATCTCAAACTTCCTCCTTC+TGG 0.307642 4:+89678368 MsG0480023779.01.T01:CDS
TTGCATTGATCGTTTGAAAA+TGG 0.308329 4:+89679895 MsG0480023779.01.T01:CDS
CGAAACGCAATTTCGTATTA+GGG 0.309231 4:+89677983 MsG0480023779.01.T01:five_prime_UTR
TTCTCACACTTCCAGGCATT+TGG 0.323004 4:+89679467 MsG0480023779.01.T01:CDS
GACGCTTCGCTTGCTGATCT+TGG 0.338136 4:+89678305 MsG0480023779.01.T01:CDS
AAGTCTGCAAACGCAATTTC+AGG 0.340094 4:-89679510 None:intergenic
GATCGAGCTTCGCGCTGAAC+AGG 0.346443 4:+89678403 MsG0480023779.01.T01:CDS
CCATAGCAGCCACTGTCTTT+AGG 0.350322 4:-89680335 None:intergenic
ATGTTACAGACTAGAGGATA+TGG 0.353962 4:+89680839 MsG0480023779.01.T01:intron
CAGAGAATTCTCACACTTCC+AGG 0.362661 4:+89679460 MsG0480023779.01.T01:CDS
TGAAATTGCGTTTGCAGACT+TGG 0.364314 4:+89679512 MsG0480023779.01.T01:CDS
TCTGATACTTCACCTCTGTT+AGG 0.364762 4:-89680248 None:intergenic
CGCCGTGAAGACGGCGGATC+AGG 0.364782 4:+89678158 MsG0480023779.01.T01:CDS
ATGGCCGACAAGTTTGATAA+AGG 0.367425 4:+89679872 MsG0480023779.01.T01:CDS
TACAGAAGCTGTGGAAATAC+TGG 0.367791 4:+89679949 MsG0480023779.01.T01:CDS
ATTTGAGAAAGAAGTAAAAT+GGG 0.373720 4:+89679997 MsG0480023779.01.T01:CDS
AAAGGCGAAAGCGTCCTTAT+CGG 0.375770 4:-89678234 None:intergenic
GACGATAACTTGAAGGTTAC+CGG 0.386145 4:-89678282 None:intergenic
TACCATTCATATGGCTCAAC+AGG 0.392016 4:-89680867 None:intergenic
CTTAGTCGCGTGTATACATT+TGG 0.394717 4:+89679423 MsG0480023779.01.T01:CDS
TAGAATTGAAACAACTTGAT+AGG 0.401086 4:+89681244 MsG0480023779.01.T01:three_prime_UTR
GGATATTTAGCAGGATCAAC+AGG 0.402646 4:-89678440 None:intergenic
TCCGTCCTTTCGAGGAATAC+CGG 0.412212 4:-89679313 None:intergenic
TTCAAAGCCAAGACCGAATC+CGG 0.420519 4:-89680925 None:intergenic
CAAGGATTCAAGAGTGAGTC+TGG 0.425712 4:-89678474 None:intergenic
TCCGTCGTTCAATTCCAAAA+AGG 0.425770 4:-89678252 None:intergenic
GCTGTCGGAGAATTCAGCTT+TGG 0.429447 4:-89678114 None:intergenic
TATCTGCTGTTGCTCGGATT+CGG 0.429555 4:+89678947 MsG0480023779.01.T01:CDS
CATCATAACGCTCCTCCCTT+TGG 0.431653 4:-89680672 None:intergenic
AAACATGCCGGATTCGGTCT+TGG 0.433671 4:+89680918 MsG0480023779.01.T01:CDS
TCCACCTTTCCGTCCTTTCG+AGG 0.434861 4:-89679321 None:intergenic
CTGTCGGAGAATTCAGCTTT+GGG 0.435015 4:-89678113 None:intergenic
ACAGTGAAACATGCCGGATT+CGG 0.441656 4:+89680912 MsG0480023779.01.T01:CDS
CAATCACTAGTGGTGACAAT+TGG 0.443292 4:-89679033 None:intergenic
AGCTTTGGGAACCTCGGTTA+CGG 0.446521 4:-89678099 None:intergenic
CCAAAATTCAGCCAAATGCC+TGG 0.449352 4:-89679478 None:intergenic
TCTCTTGAAAGTAAATTAGT+TGG 0.449996 4:-89681159 None:intergenic
TTGGTAGAAGAGTGTAAGCC+AGG 0.460795 4:-89681140 None:intergenic
CCTAAAGACAGTGGCTGCTA+TGG 0.464078 4:+89680335 MsG0480023779.01.T01:CDS
GCAACCTTTATCAAACTTGT+CGG 0.464855 4:-89679876 None:intergenic
CTGAAATTTATGCCTCTACA+TGG 0.465585 4:-89681109 None:intergenic
TAAATTTCAGTCTTATGTCC+TGG 0.465801 4:+89681122 MsG0480023779.01.T01:three_prime_UTR
TCACTGTTCCATACCGCCTC+AGG 0.466762 4:-89680896 None:intergenic
AACCTGATCCGCCGTCTTCA+CGG 0.469954 4:-89678160 None:intergenic
GATTCGGTCTTGGCTTTGAA+AGG 0.469967 4:+89680928 MsG0480023779.01.T01:CDS
CCGTCCTTTCGAGGAATACC+GGG 0.472290 4:-89679312 None:intergenic
GCCGTCTTCACGGCGGATGA+TGG 0.473112 4:-89678150 None:intergenic
CAGGCAAGAAAGCAAGAATC+GGG 0.476509 4:+89678186 MsG0480023779.01.T01:CDS
TGTAGATCTTTCCACCAGCT+TGG 0.481572 4:-89679283 None:intergenic
ATTCCCTTCCCACGATATCC+TGG 0.485303 4:+89680993 MsG0480023779.01.T01:CDS
AGGTCAATGTACCATTCATA+TGG 0.485564 4:-89680876 None:intergenic
AACCGGAAGAAAAGCCGATA+AGG 0.487481 4:+89678220 MsG0480023779.01.T01:CDS
TGTATATGTAAGTCGAATGA+AGG 0.488290 4:-89679930 None:intergenic
GTTCAGTGAAGCAGAGAGGT+TGG 0.488710 4:+89679092 MsG0480023779.01.T01:CDS
TTAGGCAAAGGATATTTAGC+AGG 0.489337 4:-89678449 None:intergenic
TCAACATCAGCTTCAGTTGG+AGG 0.491857 4:-89679138 None:intergenic
AAGCTTGTTGTTCAGGAGAA+GGG 0.495167 4:+89679168 MsG0480023779.01.T01:CDS
GCTGAACAGGTTCTTCATGT+TGG 0.497814 4:+89678416 MsG0480023779.01.T01:CDS
GGAACTTGTGTTGTTGTTGA+GGG 0.498325 4:+89678344 MsG0480023779.01.T01:CDS
GGCGGATGATGGATTTGATC+AGG 0.500013 4:-89678139 None:intergenic
TGCAGATATCTGCTGTTGCT+CGG 0.500801 4:+89678941 MsG0480023779.01.T01:intron
TGTTATGCGGCGGCGATGGA+TGG 0.501113 4:-89678042 None:intergenic
TACATTGACCTGAGGCGGTA+TGG 0.502024 4:+89680888 MsG0480023779.01.T01:CDS
AATTCTCTGCACGAAATGTC+GGG 0.502631 4:-89679446 None:intergenic
AATCATAAATCTGCTCTGCC+AGG 0.503281 4:-89681011 None:intergenic
GGATAATTATAGACTATGAC+AGG 0.507099 4:-89680273 None:intergenic
TTGTTGTTATGCGGCGGCGA+TGG 0.509306 4:-89678046 None:intergenic
ATCTGCAAAAGCAGATAAGA+AGG 0.510339 4:+89679212 MsG0480023779.01.T01:CDS
CTTGGACAACTTGTTCAGAC+TGG 0.510383 4:+89678323 MsG0480023779.01.T01:CDS
GACGGCGGATCAGGTTTAGC+AGG 0.513325 4:+89678167 MsG0480023779.01.T01:CDS
TACTTTCAAGAGAGAATACC+GGG 0.513406 4:+89681169 MsG0480023779.01.T01:three_prime_UTR
GCAGGCAAGAAAGCAAGAAT+CGG 0.515281 4:+89678185 MsG0480023779.01.T01:CDS
ATCTTCTGTTTCGCTCCAGA+AGG 0.521124 4:-89678383 None:intergenic
TACTCTTCGCTGCTAACAGA+AGG 0.521613 4:+89677956 None:intergenic
GCTTCAACATCAGCTTCAGT+TGG 0.525178 4:-89679141 None:intergenic
AAGCGTCGACGATAACTTGA+AGG 0.525722 4:-89678289 None:intergenic
AATTGCGTTTGCAGACTTGG+AGG 0.525936 4:+89679515 MsG0480023779.01.T01:CDS
TCCATCATCCGCCGTGAAGA+CGG 0.526839 4:+89678149 MsG0480023779.01.T01:CDS
TTACTTTCAAGAGAGAATAC+CGG 0.527707 4:+89681168 MsG0480023779.01.T01:three_prime_UTR
TAAGCTTGTTGTTCAGGAGA+AGG 0.533592 4:+89679167 MsG0480023779.01.T01:CDS
TTGAACGACGGAAGCTGCGC+CGG 0.541271 4:+89678263 MsG0480023779.01.T01:CDS
GAATTCTCTGCACGAAATGT+CGG 0.541676 4:-89679447 None:intergenic
CAGCTCAACTACTTCAGCAA+GGG 0.544374 4:-89681068 None:intergenic
CCGTGTTGGTTCTGGAACGA+AGG 0.558261 4:-89678511 None:intergenic
AGCTTGTTGTTCAGGAGAAG+GGG 0.558894 4:+89679169 MsG0480023779.01.T01:CDS
TCTGCTCTGCCAGGATATCG+TGG 0.559764 4:-89681002 None:intergenic
TGGATAATTGGCCGGATGAG+AGG 0.561575 4:-89678076 None:intergenic
ACAATGTCAGACCTCTCATC+CGG 0.561641 4:+89678065 MsG0480023779.01.T01:exon
AAAAGAAAATGTATCCAAGC+TGG 0.561643 4:+89679269 MsG0480023779.01.T01:CDS
TTCTGTTTCGCTCCAGAAGG+AGG 0.561830 4:-89678380 None:intergenic
TGAAGCAGAGAGGTTGGAGA+AGG 0.562538 4:+89679098 MsG0480023779.01.T01:CDS
GAATTCAGCTTTGGGAACCT+CGG 0.563789 4:-89678105 None:intergenic
CCCGGTATTCCTCGAAAGGA+CGG 0.564925 4:+89679312 MsG0480023779.01.T01:CDS
TCAGGTTGGAGAGTTAATTG+GGG 0.567841 4:+89680645 MsG0480023779.01.T01:intron
TGGAACTTGTGTTGTTGTTG+AGG 0.575683 4:+89678343 MsG0480023779.01.T01:CDS
ATTTAGCTTCTGAGCATGAA+AGG 0.578456 4:+89680026 MsG0480023779.01.T01:CDS
ACTAGTGATTGTGAGGGTGC+TGG 0.579234 4:+89679045 MsG0480023779.01.T01:CDS
GTATATGTAAGTCGAATGAA+GGG 0.579832 4:-89679929 None:intergenic
ACATCAGCTTCAGTTGGAGG+CGG 0.581956 4:-89679135 None:intergenic
GGATTTGATCAGGACGCTGT+CGG 0.584016 4:-89678129 None:intergenic
CTGCCAGGATATCGTGGGAA+GGG 0.584465 4:-89680996 None:intergenic
AGAAAATGTATCCAAGCTGG+TGG 0.588613 4:+89679272 MsG0480023779.01.T01:CDS
CTGGAAGAATCTGTGACGAA+TGG 0.592469 4:+89679968 MsG0480023779.01.T01:CDS
TCCTCGAAAGGACGGAAAGG+TGG 0.597542 4:+89679320 MsG0480023779.01.T01:CDS
TCAGCTCAACTACTTCAGCA+AGG 0.601526 4:-89681069 None:intergenic
GGTTACGGTGGATAATTGGC+CGG 0.603196 4:-89678084 None:intergenic
TATGGATGTTCTTGTGCCAA+AGG 0.605646 4:+89680353 MsG0480023779.01.T01:CDS
GAAGGAGATTAGTGCTGCTG+TGG 0.610064 4:+89679230 MsG0480023779.01.T01:CDS
TCAGCCCGGTATTCCTCGAA+AGG 0.611373 4:+89679308 MsG0480023779.01.T01:CDS
GGTCTGACATTGTTGTTATG+CGG 0.616008 4:-89678055 None:intergenic
TATGGAACAGTGAAACATGC+CGG 0.617944 4:+89680906 MsG0480023779.01.T01:CDS
GAAAGATCTACACTTCAGCC+CGG 0.620865 4:+89679294 MsG0480023779.01.T01:CDS
CCATAAATTCCATATCCTCA+AGG 0.622708 4:-89679853 None:intergenic
CTGACATTGTTGTTATGCGG+CGG 0.624241 4:-89678052 None:intergenic
ACTCTTCGCTGCTAACAGAA+GGG 0.624348 4:+89677957 None:intergenic
TTTGAGAAAGAAGTAAAATG+GGG 0.624348 4:+89679998 MsG0480023779.01.T01:CDS
CTGCTCTGCCAGGATATCGT+GGG 0.624533 4:-89681001 None:intergenic
CTTTGTTCAGTGAAGCAGAG+AGG 0.632800 4:+89679088 MsG0480023779.01.T01:CDS
GTTATAATGTTACAGACTAG+AGG 0.632976 4:+89680833 MsG0480023779.01.T01:intron
GGCAAGAAAGCAAGAATCGG+GGG 0.633348 4:+89678188 MsG0480023779.01.T01:CDS
CAGGTTGGAGAGTTAATTGG+GGG 0.635147 4:+89680646 MsG0480023779.01.T01:intron
CCTTCGTTCCAGAACCAACA+CGG 0.635811 4:+89678511 MsG0480023779.01.T01:CDS
GCTTGTTGTTCAGGAGAAGG+GGG 0.639836 4:+89679170 MsG0480023779.01.T01:CDS
TCTGCCAGGATATCGTGGGA+AGG 0.640927 4:-89680997 None:intergenic
GTTACTTGACAACTGCCTTG+AGG 0.641332 4:+89679838 MsG0480023779.01.T01:CDS
CTGTCTTTAGGTCATCATTG+AGG 0.642743 4:-89680323 None:intergenic
CCAATTATCCACCGTAACCG+AGG 0.644381 4:+89678088 MsG0480023779.01.T01:CDS
AATGGTACATTGACCTGAGG+CGG 0.645218 4:+89680883 MsG0480023779.01.T01:CDS
ACTTACATATACAGAAGCTG+TGG 0.652239 4:+89679940 MsG0480023779.01.T01:CDS
TATTCCTCGAAAGGACGGAA+AGG 0.658806 4:+89679317 MsG0480023779.01.T01:CDS
ATCATCCGCCGTGAAGACGG+CGG 0.659218 4:+89678152 MsG0480023779.01.T01:CDS
TGCCTGTTGAGCCATATGAA+TGG 0.659840 4:+89680865 MsG0480023779.01.T01:CDS
TTTGGGAACCTCGGTTACGG+TGG 0.663451 4:-89678096 None:intergenic
ATAATGAAATAAAAGAAATG+CGG 0.665464 4:-89681220 None:intergenic
GTTATGATGTCATTCAACAA+AGG 0.665614 4:+89680686 MsG0480023779.01.T01:CDS
AGCACCCTCACAATCACTAG+TGG 0.672495 4:-89679043 None:intergenic
AAGGTGAACGAAATCACGCA+AGG 0.674910 4:-89678492 None:intergenic
TGTCACCACTAGTGATTGTG+AGG 0.675390 4:+89679038 MsG0480023779.01.T01:CDS
ATGAATGGTACATTGACCTG+AGG 0.689555 4:+89680880 MsG0480023779.01.T01:CDS
AGGCAAGAAAGCAAGAATCG+GGG 0.689745 4:+89678187 MsG0480023779.01.T01:CDS
CAATGATGACCTAAAGACAG+TGG 0.699761 4:+89680326 MsG0480023779.01.T01:CDS
ATATGTAAGTCGAATGAAGG+GGG 0.701471 4:-89679927 None:intergenic
TATATGTAAGTCGAATGAAG+GGG 0.702544 4:-89679928 None:intergenic
GGATGATATGAAGTGCGCCG+AGG 0.712177 4:+89679790 MsG0480023779.01.T01:intron
CTGATCCGCCGTCTTCACGG+CGG 0.741003 4:-89678157 None:intergenic
GGTATGCAGATACCTAACAG+AGG 0.750059 4:+89680236 MsG0480023779.01.T01:intron
GTCACCACTAGTGATTGTGA+GGG 0.751157 4:+89679039 MsG0480023779.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATAAAAAGTTAAATT+CGG + Chr4:89678778-89678797 MsG0480023779.01.T01:intron 10.0%
!! TAATTACAATAATTCTTATT+CGG + Chr4:89678814-89678833 MsG0480023779.01.T01:intron 10.0%
!!! TTATAATTTCGTTAATTTTA+GGG + Chr4:89678689-89678708 MsG0480023779.01.T01:intron 10.0%
!!! TTTATAATTTCGTTAATTTT+AGG + Chr4:89678688-89678707 MsG0480023779.01.T01:intron 10.0%
!! ATAATGAAATAAAAGAAATG+CGG - Chr4:89681223-89681242 None:intergenic 15.0%
!! TTATAAAATAATCCCTAAAT+TGG - Chr4:89678675-89678694 None:intergenic 15.0%
!! TTGATTCAATGAATTATATT+TGG + Chr4:89681273-89681292 MsG0480023779.01.T01:three_prime_UTR 15.0%
!!! AATTCAAATACTGTTTTTTA+GGG + Chr4:89679655-89679674 MsG0480023779.01.T01:intron 15.0%
!!! TTTTTATGCATGTTATTATT+GGG + Chr4:89678916-89678935 MsG0480023779.01.T01:intron 15.0%
!!! TTTTTTATGCATGTTATTAT+TGG + Chr4:89678915-89678934 MsG0480023779.01.T01:intron 15.0%
!! AAACAACACAATTTAATAAG+AGG - Chr4:89680200-89680219 None:intergenic 20.0%
!! AACTACATATCAAACTATTA+AGG + Chr4:89680493-89680512 MsG0480023779.01.T01:intron 20.0%
!! AATAATTCTTATTCGGAATT+GGG + Chr4:89678821-89678840 MsG0480023779.01.T01:intron 20.0%
!! AATTTGAGAAAGAAGTAAAA+TGG + Chr4:89679996-89680015 MsG0480023779.01.T01:CDS 20.0%
!! AGAATTATTGTAATTACCAA+AGG - Chr4:89678810-89678829 None:intergenic 20.0%
!! ATTTAATAAGAGGAATGATA+AGG - Chr4:89680190-89680209 None:intergenic 20.0%
!! ATTTGAGAAAGAAGTAAAAT+GGG + Chr4:89679997-89680016 MsG0480023779.01.T01:CDS 20.0%
!! CATGTTAAAACAAAATATAC+AGG - Chr4:89680386-89680405 None:intergenic 20.0%
!! TAATATTTGCATTATTGTGT+AGG + Chr4:89679769-89679788 MsG0480023779.01.T01:intron 20.0%
!! TATTTATGAATTAGTGTAAG+CGG - Chr4:89680725-89680744 None:intergenic 20.0%
!!! ATTTTGTTTTAACATGTCTA+TGG + Chr4:89680390-89680409 MsG0480023779.01.T01:intron 20.0%
!!! CAATTCAAATACTGTTTTTT+AGG + Chr4:89679654-89679673 MsG0480023779.01.T01:intron 20.0%
!!! GTGTTTTTTACGATTAATAT+TGG + Chr4:89680092-89680111 MsG0480023779.01.T01:intron 20.0%
!!! TACAATTTTAAGGATTGAAT+AGG + Chr4:89678730-89678749 MsG0480023779.01.T01:intron 20.0%
!!! TTTGTTATAAACCACATTAT+CGG + Chr4:89679623-89679642 MsG0480023779.01.T01:intron 20.0%
! AATCATATACAAATCTCCTT+AGG + Chr4:89681309-89681328 MsG0480023779.01.T01:three_prime_UTR 25.0%
! ACAGAAAAATCCTTTACAAA+AGG - Chr4:89680773-89680792 None:intergenic 25.0%
! ACATTATAACAGTAGAAACA+AGG - Chr4:89680823-89680842 None:intergenic 25.0%
! CAATAATTCTTATTCGGAAT+TGG + Chr4:89678820-89678839 MsG0480023779.01.T01:intron 25.0%
! TAGAATTGAAACAACTTGAT+AGG + Chr4:89681244-89681263 MsG0480023779.01.T01:three_prime_UTR 25.0%
! TCATCATTACTATACACAAT+TGG - Chr4:89678575-89678594 None:intergenic 25.0%
! TCTCTTGAAAGTAAATTAGT+TGG - Chr4:89681162-89681181 None:intergenic 25.0%
! TTTGAGAAAGAAGTAAAATG+GGG + Chr4:89679998-89680017 MsG0480023779.01.T01:CDS 25.0%
!! TTGGAACACATTAGTTTATT+TGG - Chr4:89678647-89678666 None:intergenic 25.0%
!!! AGTTTTTGAAATTGTCTTGA+AGG - Chr4:89678612-89678631 None:intergenic 25.0%
!!! ATACATTTTTCAACAAGCAT+GGG + Chr4:89678992-89679011 MsG0480023779.01.T01:CDS 25.0%
!!! ATTTCCTGTTGTTGTTTTAT+TGG - Chr4:89678763-89678782 None:intergenic 25.0%
!!! GTTTTTGAAATTGTCTTGAA+GGG - Chr4:89678611-89678630 None:intergenic 25.0%
!!! TAGAATGCTTTGATTTCTTT+TGG - Chr4:89680297-89680316 None:intergenic 25.0%
AAAAGAAAATGTATCCAAGC+TGG + Chr4:89679269-89679288 MsG0480023779.01.T01:CDS 30.0%
AATCCCTAAATTGGAAATCT+TGG - Chr4:89678666-89678685 None:intergenic 30.0%
AGATTTAACATCCAAAAACC+CGG - Chr4:89681190-89681209 None:intergenic 30.0%
ATATACAGGATACATACCTT+TGG - Chr4:89680372-89680391 None:intergenic 30.0%
CAAAAATTTCACATATGCCT+CGG - Chr4:89679810-89679829 None:intergenic 30.0%
GAAAAATTGTTTCCATGTAG+AGG + Chr4:89681097-89681116 MsG0480023779.01.T01:three_prime_UTR 30.0%
GGATAATTATAGACTATGAC+AGG - Chr4:89680276-89680295 None:intergenic 30.0%
GTATATGTAAGTCGAATGAA+GGG - Chr4:89679932-89679951 None:intergenic 30.0%
GTTATAATGTTACAGACTAG+AGG + Chr4:89680833-89680852 MsG0480023779.01.T01:intron 30.0%
GTTATGATGTCATTCAACAA+AGG + Chr4:89680686-89680705 MsG0480023779.01.T01:CDS 30.0%
GTTCCAAGATTTCCAATTTA+GGG + Chr4:89678660-89678679 MsG0480023779.01.T01:intron 30.0%
TAATAAGAGGAATGATAAGG+TGG - Chr4:89680187-89680206 None:intergenic 30.0%
TATATGTAAGTCGAATGAAG+GGG - Chr4:89679931-89679950 None:intergenic 30.0%
TGTATATGTAAGTCGAATGA+AGG - Chr4:89679933-89679952 None:intergenic 30.0%
TGTTCCAAGATTTCCAATTT+AGG + Chr4:89678659-89678678 MsG0480023779.01.T01:intron 30.0%
TTAAATTCGGAATGAACCTT+TGG + Chr4:89678791-89678810 MsG0480023779.01.T01:intron 30.0%
TTACTTATATGACACTGAGT+GGG + Chr4:89680550-89680569 MsG0480023779.01.T01:intron 30.0%
TTACTTTCAAGAGAGAATAC+CGG + Chr4:89681168-89681187 MsG0480023779.01.T01:three_prime_UTR 30.0%
TTTACTTATATGACACTGAG+TGG + Chr4:89680549-89680568 MsG0480023779.01.T01:intron 30.0%
! ATGTGAAATTTTTGTGTCAG+TGG + Chr4:89679816-89679835 MsG0480023779.01.T01:CDS 30.0%
! GTAAAGGATTTTTCTGTTCA+TGG + Chr4:89680776-89680795 MsG0480023779.01.T01:intron 30.0%
! TAAATTTCAGTCTTATGTCC+TGG + Chr4:89681122-89681141 MsG0480023779.01.T01:three_prime_UTR 30.0%
! TACTGTGTTTCCTTTTGTAA+AGG + Chr4:89680760-89680779 MsG0480023779.01.T01:intron 30.0%
! TCACATCTCTAATATTTTCC+AGG - Chr4:89680974-89680993 None:intergenic 30.0%
! TTGCATTGATCGTTTGAAAA+TGG + Chr4:89679895-89679914 MsG0480023779.01.T01:CDS 30.0%
!! CATACATTTTTCAACAAGCA+TGG + Chr4:89678991-89679010 MsG0480023779.01.T01:CDS 30.0%
AAAAAAGAAGCTTACCGTGT+TGG - Chr4:89678528-89678547 None:intergenic 35.0%
AAACAGTCAAAAACGCTTGA+CGG - Chr4:89679368-89679387 None:intergenic 35.0%
AATTGTAGAGACCAGACAAT+TGG - Chr4:89678717-89678736 None:intergenic 35.0%
ACTTACATATACAGAAGCTG+TGG + Chr4:89679940-89679959 MsG0480023779.01.T01:CDS 35.0%
AGGTCAATGTACCATTCATA+TGG - Chr4:89680879-89680898 None:intergenic 35.0%
ATATGTAAGTCGAATGAAGG+GGG - Chr4:89679930-89679949 None:intergenic 35.0%
ATCTGCAAAAGCAGATAAGA+AGG + Chr4:89679212-89679231 MsG0480023779.01.T01:CDS 35.0%
ATGTTACAGACTAGAGGATA+TGG + Chr4:89680839-89680858 MsG0480023779.01.T01:intron 35.0%
ATTGTAGAGACCAGACAATT+GGG - Chr4:89678716-89678735 None:intergenic 35.0%
CCATAAATTCCATATCCTCA+AGG - Chr4:89679856-89679875 None:intergenic 35.0%
CCTTGAGGATATGGAATTTA+TGG + Chr4:89679853-89679872 MsG0480023779.01.T01:CDS 35.0%
CGAAACGCAATTTCGTATTA+GGG + Chr4:89677983-89678002 MsG0480023779.01.T01:five_prime_UTR 35.0%
CTCACCAATAAAACAACAAC+AGG + Chr4:89678756-89678775 MsG0480023779.01.T01:intron 35.0%
CTGAAATTTATGCCTCTACA+TGG - Chr4:89681112-89681131 None:intergenic 35.0%
CTTGGGAAAAGAACTATAGA+AGG + Chr4:89680415-89680434 MsG0480023779.01.T01:intron 35.0%
GAACGTGTAACTGTAATTTC+AGG + Chr4:89680627-89680646 MsG0480023779.01.T01:intron 35.0%
GCAACCTTTATCAAACTTGT+CGG - Chr4:89679879-89679898 None:intergenic 35.0%
TACTTATATGACACTGAGTG+GGG + Chr4:89680551-89680570 MsG0480023779.01.T01:intron 35.0%
TACTTTCAAGAGAGAATACC+GGG + Chr4:89681169-89681188 MsG0480023779.01.T01:three_prime_UTR 35.0%
TCGAAACGCAATTTCGTATT+AGG + Chr4:89677982-89678001 MsG0480023779.01.T01:five_prime_UTR 35.0%
TTAACATGTCTATGGTGCTT+GGG + Chr4:89680398-89680417 MsG0480023779.01.T01:intron 35.0%
TTAGGCAAAGGATATTTAGC+AGG - Chr4:89678452-89678471 None:intergenic 35.0%
TTTAACATGTCTATGGTGCT+TGG + Chr4:89680397-89680416 MsG0480023779.01.T01:intron 35.0%
! AGGATGATTCTTTTTGCAAC+CGG + Chr4:89680948-89680967 MsG0480023779.01.T01:CDS 35.0%
! ATCTCTAATATTTTCCAGGC+CGG - Chr4:89680970-89680989 None:intergenic 35.0%
! ATTTAGCTTCTGAGCATGAA+AGG + Chr4:89680026-89680045 MsG0480023779.01.T01:CDS 35.0%
! GTCTGGTCTCTACAATTTTA+AGG + Chr4:89678720-89678739 MsG0480023779.01.T01:intron 35.0%
! GTGTAACTGTAATTTCAGGT+TGG + Chr4:89680631-89680650 MsG0480023779.01.T01:intron 35.0%
!! ATTGTGTTGTTTGATGCCTT+TGG + Chr4:89680208-89680227 MsG0480023779.01.T01:intron 35.0%
!! TTCAGGTTGGAGAGTTAATT+GGG + Chr4:89680644-89680663 MsG0480023779.01.T01:intron 35.0%
!! TTGTGTTGTTTGATGCCTTT+GGG + Chr4:89680209-89680228 MsG0480023779.01.T01:intron 35.0%
!! TTTCAGGTTGGAGAGTTAAT+TGG + Chr4:89680643-89680662 MsG0480023779.01.T01:intron 35.0%
AACAGTCAAAAACGCTTGAC+GGG - Chr4:89679367-89679386 None:intergenic 40.0%
AAGTCTGCAAACGCAATTTC+AGG - Chr4:89679513-89679532 None:intergenic 40.0%
AATCATAAATCTGCTCTGCC+AGG - Chr4:89681014-89681033 None:intergenic 40.0%
AATTCTCTGCACGAAATGTC+GGG - Chr4:89679449-89679468 None:intergenic 40.0%
ACACTGCTTACTATGATGGT+AGG - Chr4:89680441-89680460 None:intergenic 40.0%
AGAAAATGTATCCAAGCTGG+TGG + Chr4:89679272-89679291 MsG0480023779.01.T01:CDS 40.0%
ATCTGCATACCATAACCCAA+AGG - Chr4:89680227-89680246 None:intergenic 40.0%
ATGAATGGTACATTGACCTG+AGG + Chr4:89680880-89680899 MsG0480023779.01.T01:CDS 40.0%
ATGGCCGACAAGTTTGATAA+AGG + Chr4:89679872-89679891 MsG0480023779.01.T01:CDS 40.0%
CAATCACTAGTGGTGACAAT+TGG - Chr4:89679036-89679055 None:intergenic 40.0%
CAATGATGACCTAAAGACAG+TGG + Chr4:89680326-89680345 MsG0480023779.01.T01:CDS 40.0%
CTGTCTTTAGGTCATCATTG+AGG - Chr4:89680326-89680345 None:intergenic 40.0%
CTTAGTCGCGTGTATACATT+TGG + Chr4:89679423-89679442 MsG0480023779.01.T01:CDS 40.0%
GAATTCTCTGCACGAAATGT+CGG - Chr4:89679450-89679469 None:intergenic 40.0%
GACGATAACTTGAAGGTTAC+CGG - Chr4:89678285-89678304 None:intergenic 40.0%
GGATATTTAGCAGGATCAAC+AGG - Chr4:89678443-89678462 None:intergenic 40.0%
GTCTACACTGCTTACTATGA+TGG - Chr4:89680445-89680464 None:intergenic 40.0%
TACAGAAGCTGTGGAAATAC+TGG + Chr4:89679949-89679968 MsG0480023779.01.T01:CDS 40.0%
TACCATTCATATGGCTCAAC+AGG - Chr4:89680870-89680889 None:intergenic 40.0%
TATGGAACAGTGAAACATGC+CGG + Chr4:89680906-89680925 MsG0480023779.01.T01:CDS 40.0%
TATGGATGTTCTTGTGCCAA+AGG + Chr4:89680353-89680372 MsG0480023779.01.T01:CDS 40.0%
TCCGTCGTTCAATTCCAAAA+AGG - Chr4:89678255-89678274 None:intergenic 40.0%
TCTGATACTTCACCTCTGTT+AGG - Chr4:89680251-89680270 None:intergenic 40.0%
TGAAATTGCGTTTGCAGACT+TGG + Chr4:89679512-89679531 MsG0480023779.01.T01:CDS 40.0%
! AAGAGAGAATACCGGGTTTT+TGG + Chr4:89681176-89681195 MsG0480023779.01.T01:three_prime_UTR 40.0%
! GCATTTGGCTGAATTTTGGA+TGG + Chr4:89679482-89679501 MsG0480023779.01.T01:CDS 40.0%
! GGAACTTGTGTTGTTGTTGA+GGG + Chr4:89678344-89678363 MsG0480023779.01.T01:CDS 40.0%
! GGTCTGACATTGTTGTTATG+CGG - Chr4:89678058-89678077 None:intergenic 40.0%
! TGGAACTTGTGTTGTTGTTG+AGG + Chr4:89678343-89678362 MsG0480023779.01.T01:CDS 40.0%
! TGTTTGATGCCTTTGGGTTA+TGG + Chr4:89680215-89680234 MsG0480023779.01.T01:intron 40.0%
!! AAGCTTGTTGTTCAGGAGAA+GGG + Chr4:89679168-89679187 MsG0480023779.01.T01:CDS 40.0%
!! ATTTTAGGGACCCAATTGTC+TGG + Chr4:89678703-89678722 MsG0480023779.01.T01:intron 40.0%
!! CAAGCGTTTTTGACTGTTTC+TGG + Chr4:89679369-89679388 MsG0480023779.01.T01:CDS 40.0%
!! CTGTTACTTTCGTGAATGTG+TGG + Chr4:89680115-89680134 MsG0480023779.01.T01:intron 40.0%
!! GCTTTTGTGGTTGGTGTAAT+AGG + Chr4:89680605-89680624 MsG0480023779.01.T01:intron 40.0%
!! TAAGCTTGTTGTTCAGGAGA+AGG + Chr4:89679167-89679186 MsG0480023779.01.T01:CDS 40.0%
!! TCAGGTTGGAGAGTTAATTG+GGG + Chr4:89680645-89680664 MsG0480023779.01.T01:intron 40.0%
!!! GCCTTTTTGGAATTGAACGA+CGG + Chr4:89678251-89678270 MsG0480023779.01.T01:CDS 40.0%
!!! GTTATACCCAGTTGCTTTTG+TGG + Chr4:89680592-89680611 MsG0480023779.01.T01:intron 40.0%
!!! TCAAGAGTGAGTCTGGTTTT+AGG - Chr4:89678470-89678489 None:intergenic 40.0%
AACCGGAAGAAAAGCCGATA+AGG + Chr4:89678220-89678239 MsG0480023779.01.T01:CDS 45.0%
AAGCACCAACCATAGGAGTA+GGG - Chr4:89679726-89679745 None:intergenic 45.0%
AAGGTGAACGAAATCACGCA+AGG - Chr4:89678495-89678514 None:intergenic 45.0%
AATGGTACATTGACCTGAGG+CGG + Chr4:89680883-89680902 MsG0480023779.01.T01:CDS 45.0%
AATTGCGTTTGCAGACTTGG+AGG + Chr4:89679515-89679534 MsG0480023779.01.T01:CDS 45.0%
ACAATGTCAGACCTCTCATC+CGG + Chr4:89678065-89678084 MsG0480023779.01.T01:exon 45.0%
ACACCAACCACAAAAGCAAC+TGG - Chr4:89680602-89680621 None:intergenic 45.0%
ACAGTGAAACATGCCGGATT+CGG + Chr4:89680912-89680931 MsG0480023779.01.T01:CDS 45.0%
AGAGGAATGATAAGGTGGCT+TGG - Chr4:89680182-89680201 None:intergenic 45.0%
AGGCAAGAAAGCAAGAATCG+GGG + Chr4:89678187-89678206 MsG0480023779.01.T01:CDS 45.0%
AGTTAATTGGGGGAAGCCAA+AGG + Chr4:89680656-89680675 MsG0480023779.01.T01:CDS 45.0%
ATCTTCTGTTTCGCTCCAGA+AGG - Chr4:89678386-89678405 None:intergenic 45.0%
CAAGGATTCAAGAGTGAGTC+TGG - Chr4:89678477-89678496 None:intergenic 45.0%
CACCAACCACAAAAGCAACT+GGG - Chr4:89680601-89680620 None:intergenic 45.0%
CAGAGAATTCTCACACTTCC+AGG + Chr4:89679460-89679479 MsG0480023779.01.T01:CDS 45.0%
CAGCTCAACTACTTCAGCAA+GGG - Chr4:89681071-89681090 None:intergenic 45.0%
CAGGCAAGAAAGCAAGAATC+GGG + Chr4:89678186-89678205 MsG0480023779.01.T01:CDS 45.0%
CATCTCAAACTTCCTCCTTC+TGG + Chr4:89678368-89678387 MsG0480023779.01.T01:CDS 45.0%
CCAAAATTCAGCCAAATGCC+TGG - Chr4:89679481-89679500 None:intergenic 45.0%
CTGGAAGAATCTGTGACGAA+TGG + Chr4:89679968-89679987 MsG0480023779.01.T01:CDS 45.0%
CTGTCGGAGAATTCAGCTTT+GGG - Chr4:89678116-89678135 None:intergenic 45.0%
CTTTGTTCAGTGAAGCAGAG+AGG + Chr4:89679088-89679107 MsG0480023779.01.T01:CDS 45.0%
GAAAGATCTACACTTCAGCC+CGG + Chr4:89679294-89679313 MsG0480023779.01.T01:CDS 45.0%
GCAGGCAAGAAAGCAAGAAT+CGG + Chr4:89678185-89678204 MsG0480023779.01.T01:CDS 45.0%
GCTGAACAGGTTCTTCATGT+TGG + Chr4:89678416-89678435 MsG0480023779.01.T01:CDS 45.0%
GCTTCAACATCAGCTTCAGT+TGG - Chr4:89679144-89679163 None:intergenic 45.0%
GGTATGCAGATACCTAACAG+AGG + Chr4:89680236-89680255 MsG0480023779.01.T01:intron 45.0%
GTCACCACTAGTGATTGTGA+GGG + Chr4:89679039-89679058 MsG0480023779.01.T01:CDS 45.0%
GTTAATTGGGGGAAGCCAAA+GGG + Chr4:89680657-89680676 MsG0480023779.01.T01:CDS 45.0%
GTTACTTGACAACTGCCTTG+AGG + Chr4:89679838-89679857 MsG0480023779.01.T01:CDS 45.0%
TATCTGCTGTTGCTCGGATT+CGG + Chr4:89678947-89678966 MsG0480023779.01.T01:CDS 45.0%
TATTCCTCGAAAGGACGGAA+AGG + Chr4:89679317-89679336 MsG0480023779.01.T01:CDS 45.0%
TCAACATCAGCTTCAGTTGG+AGG - Chr4:89679141-89679160 None:intergenic 45.0%
TCAGCTCAACTACTTCAGCA+AGG - Chr4:89681072-89681091 None:intergenic 45.0%
TGACAACTGCCTTGAGGATA+TGG + Chr4:89679844-89679863 MsG0480023779.01.T01:CDS 45.0%
TGCAGATATCTGCTGTTGCT+CGG + Chr4:89678941-89678960 MsG0480023779.01.T01:intron 45.0%
TGCCTGTTGAGCCATATGAA+TGG + Chr4:89680865-89680884 MsG0480023779.01.T01:CDS 45.0%
TGTAGATCTTTCCACCAGCT+TGG - Chr4:89679286-89679305 None:intergenic 45.0%
TGTCACCACTAGTGATTGTG+AGG + Chr4:89679038-89679057 MsG0480023779.01.T01:CDS 45.0%
TTCAAAGCCAAGACCGAATC+CGG - Chr4:89680928-89680947 None:intergenic 45.0%
TTCTCACACTTCCAGGCATT+TGG + Chr4:89679467-89679486 MsG0480023779.01.T01:CDS 45.0%
TTGACACTCAGCCGATAATG+TGG - Chr4:89679637-89679656 None:intergenic 45.0%
! AAAGCACCAACCATAGGAGT+AGG - Chr4:89679727-89679746 None:intergenic 45.0%
! CAGGTTGGAGAGTTAATTGG+GGG + Chr4:89680646-89680665 MsG0480023779.01.T01:intron 45.0%
! CCAGGCATTTGGCTGAATTT+TGG + Chr4:89679478-89679497 MsG0480023779.01.T01:CDS 45.0%
! CTGACATTGTTGTTATGCGG+CGG - Chr4:89678055-89678074 None:intergenic 45.0%
! CTTGGACAACTTGTTCAGAC+TGG + Chr4:89678323-89678342 MsG0480023779.01.T01:CDS 45.0%
! TAAGGACGCTTTCGCCTTTT+TGG + Chr4:89678238-89678257 MsG0480023779.01.T01:CDS 45.0%
! TTGGTAGAAGAGTGTAAGCC+AGG - Chr4:89681143-89681162 None:intergenic 45.0%
!! AAAGGCGAAAGCGTCCTTAT+CGG - Chr4:89678237-89678256 None:intergenic 45.0%
!! AAGCGTCGACGATAACTTGA+AGG - Chr4:89678292-89678311 None:intergenic 45.0%
!! ACAGCAAAAGCACCAACCAT+AGG - Chr4:89679733-89679752 None:intergenic 45.0%
!! AGCTGCTAAGCTTGTTGTTC+AGG + Chr4:89679161-89679180 MsG0480023779.01.T01:CDS 45.0%
!! AGCTTGTTGTTCAGGAGAAG+GGG + Chr4:89679169-89679188 MsG0480023779.01.T01:CDS 45.0%
!! GAATTCAGCTTTGGGAACCT+CGG - Chr4:89678108-89678127 None:intergenic 45.0%
!! GATTCGGTCTTGGCTTTGAA+AGG + Chr4:89680928-89680947 MsG0480023779.01.T01:CDS 45.0%
!! TATGGTTGGTGCTTTTGCTG+TGG + Chr4:89679732-89679751 MsG0480023779.01.T01:intron 45.0%
!!! GTCCTTATCGGCTTTTCTTC+CGG - Chr4:89678225-89678244 None:intergenic 45.0%
!!! GTGAGTCTGGTTTTAGGCAA+AGG - Chr4:89678464-89678483 None:intergenic 45.0%
!!! TACCCAGTTGCTTTTGTGGT+TGG + Chr4:89680596-89680615 MsG0480023779.01.T01:intron 45.0%
ACATCAGCTTCAGTTGGAGG+CGG - Chr4:89679138-89679157 None:intergenic 50.0%
AGAAAGCAAGAATCGGGGGA+TGG + Chr4:89678192-89678211 MsG0480023779.01.T01:CDS 50.0%
AGCACCAACCATAGGAGTAG+GGG - Chr4:89679725-89679744 None:intergenic 50.0%
AGCACCCTCACAATCACTAG+TGG - Chr4:89679046-89679065 None:intergenic 50.0%
ATTCCCTTCCCACGATATCC+TGG + Chr4:89680993-89681012 MsG0480023779.01.T01:CDS 50.0%
CAACTTCACCCCTACTCCTA+TGG + Chr4:89679714-89679733 MsG0480023779.01.T01:intron 50.0%
CATAGGAGTAGGGGTGAAGT+TGG - Chr4:89679716-89679735 None:intergenic 50.0%
CATCATAACGCTCCTCCCTT+TGG - Chr4:89680675-89680694 None:intergenic 50.0%
CCAATTATCCACCGTAACCG+AGG + Chr4:89678088-89678107 MsG0480023779.01.T01:CDS 50.0%
CCATAGCAGCCACTGTCTTT+AGG - Chr4:89680338-89680357 None:intergenic 50.0%
CCTAAAGACAGTGGCTGCTA+TGG + Chr4:89680335-89680354 MsG0480023779.01.T01:CDS 50.0%
CCTCGGTTACGGTGGATAAT+TGG - Chr4:89678091-89678110 None:intergenic 50.0%
CCTTCGTTCCAGAACCAACA+CGG + Chr4:89678511-89678530 MsG0480023779.01.T01:CDS 50.0%
GAAAGCAAGAATCGGGGGAT+GGG + Chr4:89678193-89678212 MsG0480023779.01.T01:CDS 50.0%
GCTGTCGGAGAATTCAGCTT+TGG - Chr4:89678117-89678136 None:intergenic 50.0%
GGATTTGATCAGGACGCTGT+CGG - Chr4:89678132-89678151 None:intergenic 50.0%
GGCAAGAAAGCAAGAATCGG+GGG + Chr4:89678188-89678207 MsG0480023779.01.T01:CDS 50.0%
GGTTACGGTGGATAATTGGC+CGG - Chr4:89678087-89678106 None:intergenic 50.0%
GTTCAGTGAAGCAGAGAGGT+TGG + Chr4:89679092-89679111 MsG0480023779.01.T01:CDS 50.0%
TACATTGACCTGAGGCGGTA+TGG + Chr4:89680888-89680907 MsG0480023779.01.T01:CDS 50.0%
TCCGTCCTTTCGAGGAATAC+CGG - Chr4:89679316-89679335 None:intergenic 50.0%
TGAAGCAGAGAGGTTGGAGA+AGG + Chr4:89679098-89679117 MsG0480023779.01.T01:CDS 50.0%
TGGATAATTGGCCGGATGAG+AGG - Chr4:89678079-89678098 None:intergenic 50.0%
TTCACCCCTACTCCTATGGT+TGG + Chr4:89679718-89679737 MsG0480023779.01.T01:intron 50.0%
TTCTGTTTCGCTCCAGAAGG+AGG - Chr4:89678383-89678402 None:intergenic 50.0%
! AAACATGCCGGATTCGGTCT+TGG + Chr4:89680918-89680937 MsG0480023779.01.T01:CDS 50.0%
! ACTAGTGATTGTGAGGGTGC+TGG + Chr4:89679045-89679064 MsG0480023779.01.T01:CDS 50.0%
! CTTTGCATCGACACTCAGTC+TGG - Chr4:89678864-89678883 None:intergenic 50.0%
! GAAGGAGATTAGTGCTGCTG+TGG + Chr4:89679230-89679249 MsG0480023779.01.T01:CDS 50.0%
! GATTCTTTTTGCAACCGGCC+TGG + Chr4:89680953-89680972 MsG0480023779.01.T01:CDS 50.0%
! GGAATGATAAGGTGGCTTGG+TGG - Chr4:89680179-89680198 None:intergenic 50.0%
!! AGCTTTGGGAACCTCGGTTA+CGG - Chr4:89678102-89678121 None:intergenic 50.0%
!! AGGTGGCTTGGTGGTTGAAT+AGG - Chr4:89680170-89680189 None:intergenic 50.0%
!! CAGACTGAGTGTCGATGCAA+AGG + Chr4:89678862-89678881 MsG0480023779.01.T01:intron 50.0%
!! GAAGCTTACCGTGTTGGTTC+TGG - Chr4:89678522-89678541 None:intergenic 50.0%
!! GCTTGTTGTTCAGGAGAAGG+GGG + Chr4:89679170-89679189 MsG0480023779.01.T01:CDS 50.0%
!! GGCGGATGATGGATTTGATC+AGG - Chr4:89678142-89678161 None:intergenic 50.0%
!! GGTGGCTTGGTGGTTGAATA+GGG - Chr4:89680169-89680188 None:intergenic 50.0%
AACCTGATCCGCCGTCTTCA+CGG - Chr4:89678163-89678182 None:intergenic 55.0%
AATTGGGGGAAGCCAAAGGG+AGG + Chr4:89680660-89680679 MsG0480023779.01.T01:CDS 55.0%
ATCGGGGGATGGGTGAAAAC+CGG + Chr4:89678203-89678222 MsG0480023779.01.T01:CDS 55.0%
CCCGGTATTCCTCGAAAGGA+CGG + Chr4:89679312-89679331 MsG0480023779.01.T01:CDS 55.0%
CCGTCCTTTCGAGGAATACC+GGG - Chr4:89679315-89679334 None:intergenic 55.0%
CTGCCAGGATATCGTGGGAA+GGG - Chr4:89680999-89681018 None:intergenic 55.0%
CTGCTCTGCCAGGATATCGT+GGG - Chr4:89681004-89681023 None:intergenic 55.0%
GGATGATATGAAGTGCGCCG+AGG + Chr4:89679790-89679809 MsG0480023779.01.T01:intron 55.0%
TCACTGTTCCATACCGCCTC+AGG - Chr4:89680899-89680918 None:intergenic 55.0%
TCAGCCCGGTATTCCTCGAA+AGG + Chr4:89679308-89679327 MsG0480023779.01.T01:CDS 55.0%
TCCACCTTTCCGTCCTTTCG+AGG - Chr4:89679324-89679343 None:intergenic 55.0%
TCCATCATCCGCCGTGAAGA+CGG + Chr4:89678149-89678168 MsG0480023779.01.T01:CDS 55.0%
TCCTCGAAAGGACGGAAAGG+TGG + Chr4:89679320-89679339 MsG0480023779.01.T01:CDS 55.0%
TCTGCCAGGATATCGTGGGA+AGG - Chr4:89681000-89681019 None:intergenic 55.0%
TCTGCTCTGCCAGGATATCG+TGG - Chr4:89681005-89681024 None:intergenic 55.0%
TGAATAGGGCGGAGCAGCAA+AGG - Chr4:89680155-89680174 None:intergenic 55.0%
TGTTGTTCAGGAGAAGGGGG+AGG + Chr4:89679173-89679192 MsG0480023779.01.T01:CDS 55.0%
TTTGGGAACCTCGGTTACGG+TGG - Chr4:89678099-89678118 None:intergenic 55.0%
! GACGCTTCGCTTGCTGATCT+TGG + Chr4:89678305-89678324 MsG0480023779.01.T01:CDS 55.0%
! TTGTTGTTATGCGGCGGCGA+TGG - Chr4:89678049-89678068 None:intergenic 55.0%
!! CCGTGTTGGTTCTGGAACGA+AGG - Chr4:89678514-89678533 None:intergenic 55.0%
!! GGCTTGGTGGTTGAATAGGG+CGG - Chr4:89680166-89680185 None:intergenic 55.0%
ATCATCCGCCGTGAAGACGG+CGG + Chr4:89678152-89678171 MsG0480023779.01.T01:CDS 60.0%
GACGGCGGATCAGGTTTAGC+AGG + Chr4:89678167-89678186 MsG0480023779.01.T01:CDS 60.0%
GATCGAGCTTCGCGCTGAAC+AGG + Chr4:89678403-89678422 MsG0480023779.01.T01:CDS 60.0%
GGCGGAGCAGCAAAGGACAT+AGG - Chr4:89680148-89680167 None:intergenic 60.0%
TGTTATGCGGCGGCGATGGA+TGG - Chr4:89678045-89678064 None:intergenic 60.0%
TTGAACGACGGAAGCTGCGC+CGG + Chr4:89678263-89678282 MsG0480023779.01.T01:CDS 60.0%
CTGATCCGCCGTCTTCACGG+CGG - Chr4:89678160-89678179 None:intergenic 65.0%
GCCGTCTTCACGGCGGATGA+TGG - Chr4:89678153-89678172 None:intergenic 65.0%
CGCCGTGAAGACGGCGGATC+AGG + Chr4:89678158-89678177 MsG0480023779.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 89677967 89681330 89677967 ID=MsG0480023779.01;Name=MsG0480023779.01
Chr4 mRNA 89677967 89681330 89677967 ID=MsG0480023779.01.T01;Parent=MsG0480023779.01;Name=MsG0480023779.01.T01;_AED=0.43;_eAED=0.43;_QI=101|1|1|1|1|1|6|299|561
Chr4 exon 89677967 89678532 89677967 ID=MsG0480023779.01.T01:exon:33637;Parent=MsG0480023779.01.T01
Chr4 exon 89678946 89679536 89678946 ID=MsG0480023779.01.T01:exon:33638;Parent=MsG0480023779.01.T01
Chr4 exon 89679791 89680047 89679791 ID=MsG0480023779.01.T01:exon:33639;Parent=MsG0480023779.01.T01
Chr4 exon 89680245 89680374 89680245 ID=MsG0480023779.01.T01:exon:33640;Parent=MsG0480023779.01.T01
Chr4 exon 89680649 89680707 89680649 ID=MsG0480023779.01.T01:exon:33641;Parent=MsG0480023779.01.T01
Chr4 exon 89680848 89681330 89680848 ID=MsG0480023779.01.T01:exon:33642;Parent=MsG0480023779.01.T01
Chr4 five_prime_UTR 89677967 89678067 89677967 ID=MsG0480023779.01.T01:five_prime_utr;Parent=MsG0480023779.01.T01
Chr4 CDS 89678068 89678532 89678068 ID=MsG0480023779.01.T01:cds;Parent=MsG0480023779.01.T01
Chr4 CDS 89678946 89679536 89678946 ID=MsG0480023779.01.T01:cds;Parent=MsG0480023779.01.T01
Chr4 CDS 89679791 89680047 89679791 ID=MsG0480023779.01.T01:cds;Parent=MsG0480023779.01.T01
Chr4 CDS 89680245 89680374 89680245 ID=MsG0480023779.01.T01:cds;Parent=MsG0480023779.01.T01
Chr4 CDS 89680649 89680707 89680649 ID=MsG0480023779.01.T01:cds;Parent=MsG0480023779.01.T01
Chr4 CDS 89680848 89681031 89680848 ID=MsG0480023779.01.T01:cds;Parent=MsG0480023779.01.T01
Chr4 three_prime_UTR 89681032 89681330 89681032 ID=MsG0480023779.01.T01:three_prime_utr;Parent=MsG0480023779.01.T01
Gene Sequence

>MsG0480023779.01.T01

ATGTCAGACCTCTCATCCGGCCAATTATCCACCGTAACCGAGGTTCCCAAAGCTGAATTCTCCGACAGCGTCCTGATCAAATCCATCATCCGCCGTGAAGACGGCGGATCAGGTTTAGCAGGCAAGAAAGCAAGAATCGGGGGATGGGTGAAAACCGGAAGAAAAGCCGATAAGGACGCTTTCGCCTTTTTGGAATTGAACGACGGAAGCTGCGCCGGTAACCTTCAAGTTATCGTCGACGCTTCGCTTGCTGATCTTGGACAACTTGTTCAGACTGGAACTTGTGTTGTTGTTGAGGGACATCTCAAACTTCCTCCTTCTGGAGCGAAACAGAAGATCGAGCTTCGCGCTGAACAGGTTCTTCATGTTGGTCCTGTTGATCCTGCTAAATATCCTTTGCCTAAAACCAGACTCACTCTTGAATCCTTGCGTGATTTCGTTCACCTTCGTTCCAGAACCAACACGATATCTGCTGTTGCTCGGATTCGGAATGCTCTTGCTTATGCTACACATACATTTTTCAACAAGCATGGGTTTCTTTATGTGCACACTCCAATTGTCACCACTAGTGATTGTGAGGGTGCTGGTGAAATGTTTCAAGTGACAACTTTGTTCAGTGAAGCAGAGAGGTTGGAGAAGGAACTGATACAGAATCCGCCTCCAACTGAAGCTGATGTTGAAGCTGCTAAGCTTGTTGTTCAGGAGAAGGGGGAGGTTGTTTCACAATTGAAATCTGCAAAAGCAGATAAGAAGGAGATTAGTGCTGCTGTGGATGAACTTAAAAAAGCAAAAGAAAATGTATCCAAGCTGGTGGAAAGATCTACACTTCAGCCCGGTATTCCTCGAAAGGACGGAAAGGTGGATTATACTAAAGATTTCTTTGCCCGTCAAGCGTTTTTGACTGTTTCTGGTCAGCTTCAAGTTGAGTCTTATGCATGTGCTCTTAGTCGCGTGTATACATTTGGCCCGACATTTCGTGCAGAGAATTCTCACACTTCCAGGCATTTGGCTGAATTTTGGATGGTAGAACCTGAAATTGCGTTTGCAGACTTGGAGGATGATATGAAGTGCGCCGAGGCATATGTGAAATTTTTGTGTCAGTGGTTACTTGACAACTGCCTTGAGGATATGGAATTTATGGCCGACAAGTTTGATAAAGGTTGCATTGATCGTTTGAAAATGGTTGCGTCAACCCCCTTCATTCGACTTACATATACAGAAGCTGTGGAAATACTGGAAGAATCTGTGACGAATGGTAAGAAATTTGAGAAAGAAGTAAAATGGGGAATAGATTTAGCTTCTGAGCATGAAAGATACCTAACAGAGGTGAAGTATCAGAAGCCTGTCATAGTCTATAATTATCCAAAAGAAATCAAAGCATTCTACATGCGCCTCAATGATGACCTAAAGACAGTGGCTGCTATGGATGTTCTTGTGCCAAAGGTTGGAGAGTTAATTGGGGGAAGCCAAAGGGAGGAGCGTTATGATGTCATTCAACAAAGACTAGAGGATATGGATCTGCCTGTTGAGCCATATGAATGGTACATTGACCTGAGGCGGTATGGAACAGTGAAACATGCCGGATTCGGTCTTGGCTTTGAAAGGATGATTCTTTTTGCAACCGGCCTGGAAAATATTAGAGATGTGATTCCCTTCCCACGATATCCTGGCAGAGCAGATTTATGA
Protein sequence

>MsG0480023779.01.T01

MSDLSSGQLSTVTEVPKAEFSDSVLIKSIIRREDGGSGLAGKKARIGGWVKTGRKADKDAFAFLELNDGSCAGNLQVIVDASLADLGQLVQTGTCVVVEGHLKLPPSGAKQKIELRAEQVLHVGPVDPAKYPLPKTRLTLESLRDFVHLRSRTNTISAVARIRNALAYATHTFFNKHGFLYVHTPIVTTSDCEGAGEMFQVTTLFSEAERLEKELIQNPPPTEADVEAAKLVVQEKGEVVSQLKSAKADKKEISAAVDELKKAKENVSKLVERSTLQPGIPRKDGKVDYTKDFFARQAFLTVSGQLQVESYACALSRVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMKCAEAYVKFLCQWLLDNCLEDMEFMADKFDKGCIDRLKMVASTPFIRLTYTEAVEILEESVTNGKKFEKEVKWGIDLASEHERYLTEVKYQKPVIVYNYPKEIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIQQRLEDMDLPVEPYEWYIDLRRYGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL*