AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046499.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046499.01.T01 MTR_4g109130 86.624 157 5 2 1 141 1 157 1.61e-91 267
MsG0880046499.01.T01 MTR_3g437680 83.439 157 10 2 1 141 1 157 2.84e-87 256
MsG0880046499.01.T01 MTR_3g437680 83.439 157 10 2 1 141 1 157 2.84e-87 256
MsG0880046499.01.T01 MTR_4g130917 81.529 157 13 2 1 141 1 157 2.35e-85 251
MsG0880046499.01.T01 MTR_5g042990 79.618 157 16 2 1 141 1 157 7.84e-85 250
MsG0880046499.01.T01 MTR_5g042990 77.165 127 13 2 1 111 1 127 7.96e-63 194
MsG0880046499.01.T01 MTR_5g042990 77.165 127 13 2 1 111 1 127 1.40e-62 193
MsG0880046499.01.T01 MTR_4g130917 77.953 127 12 2 1 111 1 127 2.97e-62 192
MsG0880046499.01.T01 MTR_4g109130 81.373 102 5 1 1 88 1 102 2.33e-52 166
MsG0880046499.01.T01 MTR_4g112440 63.953 86 17 1 1 72 1 86 1.56e-30 109
MsG0880046499.01.T01 MTR_4g130907 43.860 114 28 4 18 129 42 121 4.70e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046499.01.T01 AT1G13950 78.344 157 17 3 1 141 1 156 2.26e-79 236
MsG0880046499.01.T01 AT1G69410 75.796 157 21 3 1 141 1 156 3.69e-79 236
MsG0880046499.01.T01 AT1G26630 68.750 160 33 3 1 144 1 159 1.56e-72 219
MsG0880046499.01.T01 AT1G26630 69.291 127 22 3 1 111 1 126 3.22e-54 172

Find 69 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGGCCTCGACGGATTATT+AGG 0.287515 8:+74100900 None:intergenic
GGAACATTAGGTATCAATAA+AGG 0.288167 8:+74100921 None:intergenic
CATCGGCCTTAGATTCAAAT+TGG 0.297056 8:+74103481 None:intergenic
GTGAGCTTGCTCACTGAAAA+TGG 0.342511 8:-74102342 MsG0880046499.01.T01:intron
CTTGGCATGTCCATGCTTCC+CGG 0.359341 8:+74103243 None:intergenic
ATCTGTGCTTTGAAGGATAT+TGG 0.363464 8:-74102073 MsG0880046499.01.T01:intron
AGAGCACCAATTTGAATCTA+AGG 0.377994 8:-74103487 MsG0880046499.01.T01:CDS
AGCTTGTTGAGGATAAGTTT+TGG 0.388597 8:+74103449 None:intergenic
GTTCAATGGAATTCATTGTC+AGG 0.397946 8:+74100808 None:intergenic
GACGGATTATTAGGAACATT+AGG 0.412302 8:+74100909 None:intergenic
TAATCTAGAGGTTCTCTTAG+AGG 0.416071 8:-74100877 MsG0880046499.01.T01:CDS
TCCGCTTACGCTTCAATGAC+TGG 0.427634 8:+74100706 None:intergenic
GAACATTAGGTATCAATAAA+GGG 0.438912 8:+74100922 None:intergenic
GGAGCAGATCTGTGCTTTGA+AGG 0.467522 8:-74102080 MsG0880046499.01.T01:CDS
AAGAGAACCTCTAGATTAGC+AGG 0.470980 8:+74100882 None:intergenic
AATGTCAATGAGCTGATAAT+CGG 0.473877 8:+74103004 None:intergenic
GAATTCCATTGAACAGAATC+CGG 0.478860 8:-74100799 MsG0880046499.01.T01:CDS
AGCCATTGTCTGTCATCTGC+AGG 0.482706 8:-74100839 MsG0880046499.01.T01:CDS
GCTCATTGACATTTCTGAGA+TGG 0.482929 8:-74102994 MsG0880046499.01.T01:CDS
TATGAAACAGATTGTAGCTC+AGG 0.489256 8:-74100748 MsG0880046499.01.T01:CDS
GTCTGTCATCTGCAGGATCA+AGG 0.490936 8:-74100832 MsG0880046499.01.T01:CDS
TACTTGTGAGAATGGATACT+TGG 0.507316 8:-74100967 MsG0880046499.01.T01:CDS
TGTATCCGTGATGTCTGCTA+TGG 0.510337 8:-74102107 MsG0880046499.01.T01:CDS
CTTTGTGTGCAGATCAAGGA+TGG 0.512763 8:-74102154 MsG0880046499.01.T01:intron
CACTGAAAATGGAAACACTA+AGG 0.519818 8:-74102331 MsG0880046499.01.T01:CDS
GAAGTTTCGACTTCGAAGAC+CGG 0.527896 8:-74103262 MsG0880046499.01.T01:CDS
GGATGGATTTGCTGAGGGAA+AGG 0.534900 8:-74102137 MsG0880046499.01.T01:CDS
TTCAATGGAATTCATTGTCA+GGG 0.536941 8:+74100809 None:intergenic
TGTCATCGGTGGGAAGTTTG+AGG 0.539905 8:+74102304 None:intergenic
ATACTTGGTGTGGTTCTACA+AGG 0.542056 8:-74100952 MsG0880046499.01.T01:CDS
GTGTGGGCTACTTGTGAGAA+TGG 0.546544 8:-74100975 MsG0880046499.01.T01:CDS
ACTTCGAAGACCGGGAAGCA+TGG 0.555740 8:-74103253 MsG0880046499.01.T01:CDS
CTGAGTGAGCAGACTGTCAT+CGG 0.555770 8:+74102290 None:intergenic
ATACTCCGGATTCTGTTCAA+TGG 0.556785 8:+74100794 None:intergenic
AATGACTGGTACTGAGTCGC+AGG 0.557677 8:+74100720 None:intergenic
TGTTTCATAGCCATGTATAA+CGG 0.558165 8:+74100762 None:intergenic
TTTGAATCTAAGGCCGATGC+CGG 0.559985 8:-74103477 MsG0880046499.01.T01:CDS
TGCAGACACTCCGTTATACA+TGG 0.568353 8:-74100772 MsG0880046499.01.T01:CDS
ACCAGTCATTGAAGCGTAAG+CGG 0.569154 8:-74100707 MsG0880046499.01.T01:CDS
AACGGAGTGTCTGCATACTC+CGG 0.574429 8:+74100780 None:intergenic
CTGGTACTGAGTCGCAGGCG+TGG 0.575097 8:+74100725 None:intergenic
CTTCACTTCAAAGAAGCTTG+AGG 0.580602 8:-74103197 MsG0880046499.01.T01:CDS
AAAACTTATCCTCAACAAGC+TGG 0.581192 8:-74103447 MsG0880046499.01.T01:CDS
AGTGAGCAGACTGTCATCGG+TGG 0.592770 8:+74102293 None:intergenic
AAGTTTCGACTTCGAAGACC+GGG 0.594274 8:-74103261 MsG0880046499.01.T01:CDS
CGGATGGTACCAGCTTGTTG+AGG 0.595998 8:+74103438 None:intergenic
CGTGATGTCTGCTATGGGTG+AGG 0.597852 8:-74102101 MsG0880046499.01.T01:CDS
CGATGACAGTCTGCTCACTC+AGG 0.597987 8:-74102289 MsG0880046499.01.T01:intron
TCTAGATTAGCAGGCCTCGA+CGG 0.608464 8:+74100891 None:intergenic
ACATCACAATTATGTGAAGA+CGG 0.610965 8:+74103166 None:intergenic
GTATCCGTGATGTCTGCTAT+GGG 0.612684 8:-74102106 MsG0880046499.01.T01:CDS
GTGAGCAGACTGTCATCGGT+GGG 0.615967 8:+74102294 None:intergenic
CTTAGAGGAGGAACATGGTG+TGG 0.616245 8:-74100862 MsG0880046499.01.T01:CDS
GATCAAGGATGGATTTGCTG+AGG 0.618132 8:-74102143 MsG0880046499.01.T01:CDS
ATCAAGGATGGATTTGCTGA+GGG 0.621184 8:-74102142 MsG0880046499.01.T01:CDS
AATAGCAACAAAATGACACT+TGG 0.628478 8:+74103225 None:intergenic
GTCGAGGCCTGCTAATCTAG+AGG 0.632431 8:-74100889 MsG0880046499.01.T01:CDS
CAGACATCACGGATACAACA+AGG 0.636222 8:+74102113 None:intergenic
GTTCTCTTAGAGGAGGAACA+TGG 0.643855 8:-74100867 MsG0880046499.01.T01:CDS
ATCCTGCAGATGACAGACAA+TGG 0.646085 8:+74100837 None:intergenic
CTCACCCATAGCAGACATCA+CGG 0.653023 8:+74102102 None:intergenic
TCTAGAGGTTCTCTTAGAGG+AGG 0.653172 8:-74100874 MsG0880046499.01.T01:CDS
GATTTCTGAAGAAGACCGTG+TGG 0.674716 8:-74100992 MsG0880046499.01.T01:intron
ACAATATACAGACATCACTC+AGG 0.678806 8:+74100657 None:intergenic
ATTCTCACAAGTAGCCCACA+CGG 0.683820 8:+74100977 None:intergenic
ATTTCTGAAGAAGACCGTGT+GGG 0.684232 8:-74100991 MsG0880046499.01.T01:intron
GTGAGAATGGATACTTGGTG+TGG 0.714538 8:-74100962 MsG0880046499.01.T01:CDS
ATGTTCCTAATAATCCGTCG+AGG 0.724024 8:-74100905 MsG0880046499.01.T01:CDS
TAATCGGTACGATTCACGTG+AGG 0.748646 8:+74103020 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAACAAACTAAATTAAAA+CGG - Chr8:74101660-74101679 MsG0880046499.01.T01:intron 10.0%
!! CTTATAGAAATAAACATTTA+AGG - Chr8:74102766-74102785 MsG0880046499.01.T01:intron 15.0%
!! TAAACAAACTAAATTAAAAC+GGG - Chr8:74101661-74101680 MsG0880046499.01.T01:intron 15.0%
!!! CAATTGTTTTTATTTTTGTT+AGG - Chr8:74101124-74101143 MsG0880046499.01.T01:intron 15.0%
!!! TTATTTCTATAAGAGAATTT+AGG + Chr8:74102759-74102778 None:intergenic 15.0%
!!! TTTAATATTCTTTGTTGTTT+TGG - Chr8:74102612-74102631 MsG0880046499.01.T01:intron 15.0%
!! TACTATACTTGTAAAGATAA+AGG + Chr8:74102334-74102353 None:intergenic 20.0%
!! TTCATAATATAGCTATCAAA+AGG + Chr8:74101749-74101768 None:intergenic 20.0%
!!! TAAAATAGTCAACTTTTCAA+AGG + Chr8:74101250-74101269 None:intergenic 20.0%
!!! TGATTATGTTTTTGTATTGT+AGG - Chr8:74101805-74101824 MsG0880046499.01.T01:intron 20.0%
!!! TTTAGTTTGTTTAAGCTTTA+TGG + Chr8:74101654-74101673 None:intergenic 20.0%
! AAGCATATTTCCATTACATT+TGG + Chr8:74102594-74102613 None:intergenic 25.0%
! AGAGCTTAGAAAAAAGATTT+GGG + Chr8:74101624-74101643 None:intergenic 25.0%
! CATTACATTTGGCAAATTAA+TGG + Chr8:74102583-74102602 None:intergenic 25.0%
! GAACATTAGGTATCAATAAA+GGG + Chr8:74103250-74103269 None:intergenic 25.0%
! GACACAAATTAATCAAACAA+AGG + Chr8:74101228-74101247 None:intergenic 25.0%
! TAACTATGTATCCATTCTTA+CGG + Chr8:74100754-74100773 None:intergenic 25.0%
! TAATCTGATTTAGATTAGTG+TGG + Chr8:74101566-74101585 None:intergenic 25.0%
!! TTTTTGTACTTCGTTATTCA+TGG - Chr8:74100836-74100855 MsG0880046499.01.T01:CDS 25.0%
!!! CATTAATTTGCCAAATGTAA+TGG - Chr8:74102581-74102600 MsG0880046499.01.T01:intron 25.0%
!!! GAGAATTTAGGATTGTTTTA+AGG + Chr8:74102747-74102766 None:intergenic 25.0%
!!! GTATTTTGGTCATTTACTTT+GGG + Chr8:74102911-74102930 None:intergenic 25.0%
!!! TTTTAAGGAAATTCACCTTT+TGG + Chr8:74102825-74102844 None:intergenic 25.0%
AATAGCAACAAAATGACACT+TGG + Chr8:74100947-74100966 None:intergenic 30.0%
AATGTCAATGAGCTGATAAT+CGG + Chr8:74101168-74101187 None:intergenic 30.0%
ACATCACAATTATGTGAAGA+CGG + Chr8:74101006-74101025 None:intergenic 30.0%
ACTCATTTCATTCCATAGTT+TGG - Chr8:74102509-74102528 MsG0880046499.01.T01:intron 30.0%
ATAAGCCTGTTACAGATTAA+TGG + Chr8:74101721-74101740 None:intergenic 30.0%
ATTTCATTCCATAGTTTGGT+TGG - Chr8:74102513-74102532 MsG0880046499.01.T01:intron 30.0%
CAAACGAGTATTTCCTTATT+GGG - Chr8:74102301-74102320 MsG0880046499.01.T01:CDS 30.0%
CAGAGCTTAGAAAAAAGATT+TGG + Chr8:74101625-74101644 None:intergenic 30.0%
GGAACATTAGGTATCAATAA+AGG + Chr8:74103251-74103270 None:intergenic 30.0%
TAAAGGACAAATACCCAATA+AGG + Chr8:74102317-74102336 None:intergenic 30.0%
TAAGCCTGTTACAGATTAAT+GGG + Chr8:74101720-74101739 None:intergenic 30.0%
TCAAACGAGTATTTCCTTAT+TGG - Chr8:74102300-74102319 MsG0880046499.01.T01:CDS 30.0%
TGTTTCATAGCCATGTATAA+CGG + Chr8:74103410-74103429 None:intergenic 30.0%
TTCAATGGAATTCATTGTCA+GGG + Chr8:74103363-74103382 None:intergenic 30.0%
TTCATGCAATACATAAACTG+TGG + Chr8:74102557-74102576 None:intergenic 30.0%
TTTCATTCCATAGTTTGGTT+GGG - Chr8:74102514-74102533 MsG0880046499.01.T01:intron 30.0%
! GATTTGTTCTTGCATTGTAA+TGG - Chr8:74101911-74101930 MsG0880046499.01.T01:intron 30.0%
! GGTACAATAACTTTTGTAAC+AGG + Chr8:74101698-74101717 None:intergenic 30.0%
!!! GGTATTTTGGTCATTTACTT+TGG + Chr8:74102912-74102931 None:intergenic 30.0%
AAAACTTATCCTCAACAAGC+TGG - Chr8:74100722-74100741 MsG0880046499.01.T01:CDS 35.0%
AAGCCTGTTACAGATTAATG+GGG + Chr8:74101719-74101738 None:intergenic 35.0%
ATAGATTCTTGTGAGACTAG+TGG - Chr8:74102211-74102230 MsG0880046499.01.T01:intron 35.0%
CACAGCTAGAATAAATGAAG+TGG + Chr8:74102672-74102691 None:intergenic 35.0%
CACATTGAACATTCATCAGA+TGG - Chr8:74103135-74103154 MsG0880046499.01.T01:intron 35.0%
CACTGAAAATGGAAACACTA+AGG - Chr8:74101838-74101857 MsG0880046499.01.T01:intron 35.0%
CATACACAAAATCAACTCAC+CGG + Chr8:74101517-74101536 None:intergenic 35.0%
GAATTCCATTGAACAGAATC+CGG - Chr8:74103370-74103389 MsG0880046499.01.T01:intron 35.0%
GTTCAATGGAATTCATTGTC+AGG + Chr8:74103364-74103383 None:intergenic 35.0%
TAATCTAGAGGTTCTCTTAG+AGG - Chr8:74103292-74103311 MsG0880046499.01.T01:intron 35.0%
TACTTGTGAGAATGGATACT+TGG - Chr8:74103202-74103221 MsG0880046499.01.T01:CDS 35.0%
TATGAAACAGATTGTAGCTC+AGG - Chr8:74103421-74103440 MsG0880046499.01.T01:intron 35.0%
TATGTATCCATTCTTACGGA+TGG + Chr8:74100750-74100769 None:intergenic 35.0%
TATTAAAAACCGTCCATGCA+AGG - Chr8:74100772-74100791 MsG0880046499.01.T01:CDS 35.0%
TGATGAATGTTCAATGTGTG+CGG + Chr8:74103133-74103152 None:intergenic 35.0%
TGGCAAGTGTTCAAAAATCA+TGG + Chr8:74103048-74103067 None:intergenic 35.0%
TTACGAATAATCACCTTGCA+TGG + Chr8:74100788-74100807 None:intergenic 35.0%
TTCAGACCCTTTATGTTGAA+GGG - Chr8:74101486-74101505 MsG0880046499.01.T01:intron 35.0%
TTCATTCCATAGTTTGGTTG+GGG - Chr8:74102515-74102534 MsG0880046499.01.T01:intron 35.0%
! AGAGCACCAATTTGAATCTA+AGG - Chr8:74100682-74100701 MsG0880046499.01.T01:CDS 35.0%
! GTGGTGTTTATGGATTTTGT+TGG - Chr8:74102239-74102258 MsG0880046499.01.T01:intron 35.0%
!! ATCTGTGCTTTGAAGGATAT+TGG - Chr8:74102096-74102115 MsG0880046499.01.T01:CDS 35.0%
!! GACGGATTATTAGGAACATT+AGG + Chr8:74103263-74103282 None:intergenic 35.0%
!!! AGCTTGTTGAGGATAAGTTT+TGG + Chr8:74100723-74100742 None:intergenic 35.0%
AAGAGAACCTCTAGATTAGC+AGG + Chr8:74103290-74103309 None:intergenic 40.0%
ACCCTTTATGTTGAAGGGTA+TGG - Chr8:74101491-74101510 MsG0880046499.01.T01:intron 40.0%
ATACTCCGGATTCTGTTCAA+TGG + Chr8:74103378-74103397 None:intergenic 40.0%
ATGAGCATAACCGTTTGGTT+TGG + Chr8:74102887-74102906 None:intergenic 40.0%
ATGTTCCTAATAATCCGTCG+AGG - Chr8:74103264-74103283 MsG0880046499.01.T01:CDS 40.0%
CAATTTCCCCAACCAAACTA+TGG + Chr8:74102524-74102543 None:intergenic 40.0%
CATCGGCCTTAGATTCAAAT+TGG + Chr8:74100691-74100710 None:intergenic 40.0%
CTGTGTCATGATGTGTTAAG+TGG - Chr8:74102687-74102706 MsG0880046499.01.T01:intron 40.0%
CTTCACTTCAAAGAAGCTTG+AGG - Chr8:74100972-74100991 MsG0880046499.01.T01:CDS 40.0%
CTTCTTCAGAAATCAGATGC+TGG + Chr8:74103171-74103190 None:intergenic 40.0%
GAATAATCACCTTGCATGGA+CGG + Chr8:74100784-74100803 None:intergenic 40.0%
GCCATACCCTTCAACATAAA+GGG + Chr8:74101495-74101514 None:intergenic 40.0%
GTACCCCATTAATCTGTAAC+AGG - Chr8:74101713-74101732 MsG0880046499.01.T01:intron 40.0%
GTTCAGACCCTTTATGTTGA+AGG - Chr8:74101485-74101504 MsG0880046499.01.T01:intron 40.0%
TGCTCTTTACCCAAACCAAA+CGG - Chr8:74102874-74102893 MsG0880046499.01.T01:intron 40.0%
TTTGCTTTGTGTGCAGATCA+AGG - Chr8:74102011-74102030 MsG0880046499.01.T01:intron 40.0%
! ACCTTGTGTCATTGAGTTCA+TGG + Chr8:74102717-74102736 None:intergenic 40.0%
! ATTTCTGAAGAAGACCGTGT+GGG - Chr8:74103178-74103197 MsG0880046499.01.T01:CDS 40.0%
! GCTCATTGACATTTCTGAGA+TGG - Chr8:74101175-74101194 MsG0880046499.01.T01:intron 40.0%
! GGAAATTCACCTTTTGGACA+TGG + Chr8:74102819-74102838 None:intergenic 40.0%
! TGAGCATAACCGTTTGGTTT+GGG + Chr8:74102886-74102905 None:intergenic 40.0%
! TGCGGCAATAACAGGATTTT+AGG + Chr8:74103110-74103129 None:intergenic 40.0%
! TTTATGTTGAAGGGTATGGC+CGG - Chr8:74101495-74101514 MsG0880046499.01.T01:intron 40.0%
!! ATACTTGGTGTGGTTCTACA+AGG - Chr8:74103217-74103236 MsG0880046499.01.T01:CDS 40.0%
!! ATCAAGGATGGATTTGCTGA+GGG - Chr8:74102027-74102046 MsG0880046499.01.T01:intron 40.0%
!! TGTGCTTTGAAGGATATTGG+TGG - Chr8:74102099-74102118 MsG0880046499.01.T01:CDS 40.0%
!!! AGGATAAGTTTTGGAAGCAC+CGG + Chr8:74100714-74100733 None:intergenic 40.0%
!!! TAACATGTGGAGGGGTATTT+TGG + Chr8:74102925-74102944 None:intergenic 40.0%
AAGTTTCGACTTCGAAGACC+GGG - Chr8:74100908-74100927 MsG0880046499.01.T01:CDS 45.0%
AATGTTCAATGTGTGCGGTG+CGG + Chr8:74103128-74103147 None:intergenic 45.0%
ACCAGTCATTGAAGCGTAAG+CGG - Chr8:74103462-74103481 MsG0880046499.01.T01:CDS 45.0%
AGCGTGAGTTAACACACACT+GGG + Chr8:74103014-74103033 None:intergenic 45.0%
AGCGTGAGTTAACATGTGGA+GGG + Chr8:74102934-74102953 None:intergenic 45.0%
ATCCTGCAGATGACAGACAA+TGG + Chr8:74103335-74103354 None:intergenic 45.0%
ATTCTCACAAGTAGCCCACA+CGG + Chr8:74103195-74103214 None:intergenic 45.0%
CAGACATCACGGATACAACA+AGG + Chr8:74102059-74102078 None:intergenic 45.0%
CGTAAAACTCTGCTCTAGTC+TGG + Chr8:74102407-74102426 None:intergenic 45.0%
CTTTGTGTGCAGATCAAGGA+TGG - Chr8:74102015-74102034 MsG0880046499.01.T01:intron 45.0%
GAACATTCATCAGATGGCAG+AGG - Chr8:74103141-74103160 MsG0880046499.01.T01:intron 45.0%
GAAGTTTCGACTTCGAAGAC+CGG - Chr8:74100907-74100926 MsG0880046499.01.T01:CDS 45.0%
GCCATGAACTCAATGACACA+AGG - Chr8:74102713-74102732 MsG0880046499.01.T01:intron 45.0%
GGCCATACCCTTCAACATAA+AGG + Chr8:74101496-74101515 None:intergenic 45.0%
GTATCCGTGATGTCTGCTAT+GGG - Chr8:74102063-74102082 MsG0880046499.01.T01:intron 45.0%
GTTCTCTTAGAGGAGGAACA+TGG - Chr8:74103302-74103321 MsG0880046499.01.T01:intron 45.0%
TAATCGGTACGATTCACGTG+AGG + Chr8:74101152-74101171 None:intergenic 45.0%
TCTAGAGGTTCTCTTAGAGG+AGG - Chr8:74103295-74103314 MsG0880046499.01.T01:intron 45.0%
TCTTGTGAGACTAGTGGTGT+TGG - Chr8:74102217-74102236 MsG0880046499.01.T01:intron 45.0%
TGCAGACACTCCGTTATACA+TGG - Chr8:74103397-74103416 MsG0880046499.01.T01:intron 45.0%
TGGGAATGAGCATAACCGTT+TGG + Chr8:74102892-74102911 None:intergenic 45.0%
TGTATCCGTGATGTCTGCTA+TGG - Chr8:74102062-74102081 MsG0880046499.01.T01:intron 45.0%
! GATTTCTGAAGAAGACCGTG+TGG - Chr8:74103177-74103196 MsG0880046499.01.T01:CDS 45.0%
! GTGAGAATGGATACTTGGTG+TGG - Chr8:74103207-74103226 MsG0880046499.01.T01:CDS 45.0%
! GTGAGCTTGCTCACTGAAAA+TGG - Chr8:74101827-74101846 MsG0880046499.01.T01:intron 45.0%
! TTTGAATCTAAGGCCGATGC+CGG - Chr8:74100692-74100711 MsG0880046499.01.T01:CDS 45.0%
!! AGTGGTGTTGGTGGTGTTTA+TGG - Chr8:74102229-74102248 MsG0880046499.01.T01:intron 45.0%
!! GATCAAGGATGGATTTGCTG+AGG - Chr8:74102026-74102045 MsG0880046499.01.T01:intron 45.0%
ACGCAGCGTGAGTTAACATG+TGG + Chr8:74102938-74102957 None:intergenic 50.0%
ACGCTGCGTGACTTAAGTCA+CGG - Chr8:74102949-74102968 MsG0880046499.01.T01:intron 50.0%
AGCCATTGTCTGTCATCTGC+AGG - Chr8:74103330-74103349 MsG0880046499.01.T01:intron 50.0%
CAGCGTGAGTTAACACACAC+TGG + Chr8:74103015-74103034 None:intergenic 50.0%
CAGCGTGAGTTAACATGTGG+AGG + Chr8:74102935-74102954 None:intergenic 50.0%
CAGTGTGTGTTAACTCACGC+TGG - Chr8:74103013-74103032 MsG0880046499.01.T01:CDS 50.0%
CTCACCCATAGCAGACATCA+CGG + Chr8:74102070-74102089 None:intergenic 50.0%
CTGAGTGAGCAGACTGTCAT+CGG + Chr8:74101882-74101901 None:intergenic 50.0%
CTTAGAGGAGGAACATGGTG+TGG - Chr8:74103307-74103326 MsG0880046499.01.T01:intron 50.0%
GCGAACTCACCATGTCCAAA+AGG - Chr8:74102807-74102826 MsG0880046499.01.T01:intron 50.0%
GCGTGAGTTAACATGTGGAG+GGG + Chr8:74102933-74102952 None:intergenic 50.0%
GCTGGTACCATCCGTAAGAA+TGG - Chr8:74100740-74100759 MsG0880046499.01.T01:CDS 50.0%
GGAGCAGATCTGTGCTTTGA+AGG - Chr8:74102089-74102108 MsG0880046499.01.T01:CDS 50.0%
GTCTGTCATCTGCAGGATCA+AGG - Chr8:74103337-74103356 MsG0880046499.01.T01:intron 50.0%
TCCGCTTACGCTTCAATGAC+TGG + Chr8:74103466-74103485 None:intergenic 50.0%
TCTAGATTAGCAGGCCTCGA+CGG + Chr8:74103281-74103300 None:intergenic 50.0%
TGTCATCGGTGGGAAGTTTG+AGG + Chr8:74101868-74101887 None:intergenic 50.0%
! AACGGAGTGTCTGCATACTC+CGG + Chr8:74103392-74103411 None:intergenic 50.0%
! AATGACTGGTACTGAGTCGC+AGG + Chr8:74103452-74103471 None:intergenic 50.0%
! GTGTGGGCTACTTGTGAGAA+TGG - Chr8:74103194-74103213 MsG0880046499.01.T01:CDS 50.0%
! TGTGAGACTAGTGGTGTTGG+TGG - Chr8:74102220-74102239 MsG0880046499.01.T01:intron 50.0%
!! GGATGGATTTGCTGAGGGAA+AGG - Chr8:74102032-74102051 MsG0880046499.01.T01:intron 50.0%
!!! AGTTTTGGAAGCACCGGCAT+CGG + Chr8:74100708-74100727 None:intergenic 50.0%
AATTGCCTCAGCACACGCTC+TGG + Chr8:74103068-74103087 None:intergenic 55.0%
ACTTCGAAGACCGGGAAGCA+TGG - Chr8:74100916-74100935 MsG0880046499.01.T01:CDS 55.0%
AGTGAGCAGACTGTCATCGG+TGG + Chr8:74101879-74101898 None:intergenic 55.0%
CGATGACAGTCTGCTCACTC+AGG - Chr8:74101880-74101899 MsG0880046499.01.T01:intron 55.0%
CGTGATGTCTGCTATGGGTG+AGG - Chr8:74102068-74102087 MsG0880046499.01.T01:intron 55.0%
CTTGGCATGTCCATGCTTCC+CGG + Chr8:74100929-74100948 None:intergenic 55.0%
GAGCGTGTGCTGAGGCAATT+TGG - Chr8:74103068-74103087 MsG0880046499.01.T01:intron 55.0%
GTCGAGGCCTGCTAATCTAG+AGG - Chr8:74103280-74103299 MsG0880046499.01.T01:intron 55.0%
GTGAGCAGACTGTCATCGGT+GGG + Chr8:74101878-74101897 None:intergenic 55.0%
!! CGGATGGTACCAGCTTGTTG+AGG + Chr8:74100734-74100753 None:intergenic 55.0%
!! GCAGGCCTCGACGGATTATT+AGG + Chr8:74103272-74103291 None:intergenic 55.0%
ACTTGCCAGAGCGTGTGCTG+AGG - Chr8:74103060-74103079 MsG0880046499.01.T01:intron 60.0%
GTGTGCGGTGCGGCAATAAC+AGG + Chr8:74103118-74103137 None:intergenic 60.0%
! CTGGTACTGAGTCGCAGGCG+TGG + Chr8:74103447-74103466 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 74100671 74103520 74100671 ID=MsG0880046499.01;Name=MsG0880046499.01
Chr8 mRNA 74100671 74103520 74100671 ID=MsG0880046499.01.T01;Parent=MsG0880046499.01;Name=MsG0880046499.01.T01;_AED=0.50;_eAED=0.58;_QI=0|0|0|1|1|1|7|0|257
Chr8 exon 74103439 74103520 74103439 ID=MsG0880046499.01.T01:exon:17319;Parent=MsG0880046499.01.T01
Chr8 exon 74103168 74103289 74103168 ID=MsG0880046499.01.T01:exon:17318;Parent=MsG0880046499.01.T01
Chr8 exon 74102990 74103045 74102990 ID=MsG0880046499.01.T01:exon:17317;Parent=MsG0880046499.01.T01
Chr8 exon 74102290 74102359 74102290 ID=MsG0880046499.01.T01:exon:17316;Parent=MsG0880046499.01.T01
Chr8 exon 74102074 74102164 74102074 ID=MsG0880046499.01.T01:exon:17315;Parent=MsG0880046499.01.T01
Chr8 exon 74101727 74101746 74101727 ID=MsG0880046499.01.T01:exon:17314;Parent=MsG0880046499.01.T01
Chr8 exon 74100671 74101003 74100671 ID=MsG0880046499.01.T01:exon:17313;Parent=MsG0880046499.01.T01
Chr8 CDS 74103439 74103520 74103439 ID=MsG0880046499.01.T01:cds;Parent=MsG0880046499.01.T01
Chr8 CDS 74103168 74103289 74103168 ID=MsG0880046499.01.T01:cds;Parent=MsG0880046499.01.T01
Chr8 CDS 74102990 74103045 74102990 ID=MsG0880046499.01.T01:cds;Parent=MsG0880046499.01.T01
Chr8 CDS 74102290 74102359 74102290 ID=MsG0880046499.01.T01:cds;Parent=MsG0880046499.01.T01
Chr8 CDS 74102074 74102164 74102074 ID=MsG0880046499.01.T01:cds;Parent=MsG0880046499.01.T01
Chr8 CDS 74101727 74101746 74101727 ID=MsG0880046499.01.T01:cds;Parent=MsG0880046499.01.T01
Chr8 CDS 74100671 74101003 74100671 ID=MsG0880046499.01.T01:cds;Parent=MsG0880046499.01.T01
Gene Sequence

>MsG0880046499.01.T01

ATGTCTGACGAAGAGCACCAATTTGAATCTAAGGCCGATGCCGGTGCTTCCAAAACTTATCCTCAACAAGCTGGTACCATCCTGTTTGAAGTTTCGACTTCGAAGACCGGGAAGCATGGACATGCCAAGTGTCATTTTGTTGCTATTGATATCTTCACTTCAAAGAAGCTTGAGGATATCGTGCCGTCTTCACATAATTGTGATGTTCCTCACGTGAATCGTACCGATTATCAGCTCATTGACATTTCTGAGATGGATTTCTTGCTCACTGAAAATGGAAACACTAAGGATGACCTCAAACTTCCCACCGATGACAGTCTGCTCACTCAGATCAAGGATGGATTTGCTGAGGGAAAGGACCTTGTTGTATCCGTGATGTCTGCTATGGGTGAGGAGCAGATCTGTGCTTTGAAGGATATTGCTGACTTCAAGCTGTCATTAAAGACCGTGTGGGCTACTTGTGAGAATGGATACTTGGTGTGGTTCTACAAGGTCTCGTGCCCTTTATTGATACCTAATGTTCCTAATAATCCGTCGAGGCCTGCTAATCTAGAGGTTCTCTTAGAGGAGGAACATGGTGTGGAGCCATTGTCTGTCATCTGCAGGATCAAGGCCCTGACAATGAATTCCATTGAACAGAATCCGGAGTATGCAGACACTCCGTTATACATGGCTATGAAACAGATTGTAGCTCAGGCCACGCCTGCGACTCAGTACCAGTCATTGAAGCGTAAGCGGAGAAATGTCAGACAATATAGTTCACAACCTGAGTGA
Protein sequence

>MsG0880046499.01.T01

MSDEEHQFESKADAGASKTYPQQAGTILFEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEMDFLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIADFKLSLKTVWATCENGYLVWFYKVSCPLLIPNVPNNPSRPANLEVLLEEEHGVEPLSVICRIKALTMNSIEQNPEYADTPLYMAMKQIVAQATPATQYQSLKRKRRNVRQYSSQPE*