AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023800.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023800.01.T01 MTR_8g102430 92.342 444 16 1 1 444 22 447 0.0 822
MsG0480023800.01.T01 MTR_6g088805 69.462 465 138 2 1 465 26 486 0.0 667
MsG0480023800.01.T01 MTR_5g067460 55.098 461 201 3 3 461 56 512 0.0 533
MsG0480023800.01.T01 MTR_3g111020 56.828 454 194 1 1 452 50 503 0.0 526
MsG0480023800.01.T01 MTR_1g101500 54.978 462 206 1 2 461 64 525 2.39e-179 513
MsG0480023800.01.T01 MTR_5g010830 55.631 444 195 1 1 442 64 507 4.29e-179 512
MsG0480023800.01.T01 MTR_0039s0080 55.217 460 202 2 2 459 38 495 1.48e-174 500
MsG0480023800.01.T01 MTR_6g043810 48.941 472 230 3 2 462 23 494 2.46e-159 461
MsG0480023800.01.T01 MTR_6g043810 48.941 472 230 3 2 462 33 504 3.32e-159 461
MsG0480023800.01.T01 MTR_4g027920 46.485 441 232 2 2 438 156 596 3.23e-141 419
MsG0480023800.01.T01 MTR_2g435930 43.284 469 242 3 1 451 18 480 2.29e-133 395
MsG0480023800.01.T01 MTR_1g108810 35.469 437 278 3 1 434 33 468 3.07e-84 268
MsG0480023800.01.T01 MTR_6g081400 35.294 442 281 3 2 439 15 455 1.11e-83 266
MsG0480023800.01.T01 MTR_6g081410 35.068 442 283 2 1 438 24 465 5.08e-83 264
MsG0480023800.01.T01 MTR_6g081780 34.389 442 286 2 1 438 24 465 2.61e-81 260
MsG0480023800.01.T01 MTR_6g066380 34.396 439 282 4 5 438 30 467 7.58e-80 256
MsG0480023800.01.T01 MTR_1g108840 35.648 432 260 7 2 418 41 469 1.45e-79 256
MsG0480023800.01.T01 MTR_5g011540 35.153 458 264 3 2 441 43 485 7.29e-79 254
MsG0480023800.01.T01 MTR_6g081810 32.877 438 270 3 1 438 26 439 5.97e-76 245
MsG0480023800.01.T01 MTR_6g081240 35.214 443 275 6 1 436 9 446 6.45e-75 242
MsG0480023800.01.T01 MTR_6g081300 34.240 441 286 2 1 438 9 448 8.35e-75 243
MsG0480023800.01.T01 MTR_6g081390 33.258 442 290 3 2 439 12 452 4.82e-73 238
MsG0480023800.01.T01 MTR_8g106670 32.054 443 291 3 3 439 13 451 3.13e-71 234
MsG0480023800.01.T01 MTR_7g082810 29.870 462 312 4 1 456 19 474 2.49e-69 229
MsG0480023800.01.T01 MTR_6g081310 35.431 429 261 4 25 438 19 446 7.47e-68 224
MsG0480023800.01.T01 MTR_2g078930 33.641 434 284 3 1 431 42 474 2.34e-66 221
MsG0480023800.01.T01 MTR_6g004220 30.856 444 300 4 1 439 22 463 3.47e-65 218
MsG0480023800.01.T01 MTR_2g079020 32.794 433 289 1 1 431 36 468 2.28e-63 213
MsG0480023800.01.T01 MTR_6g004220 30.752 439 297 4 1 434 29 465 2.35e-63 213
MsG0480023800.01.T01 MTR_2g078970 33.181 437 282 5 1 431 30 462 2.07e-62 211
MsG0480023800.01.T01 MTR_1g109060 29.638 442 305 4 2 439 24 463 4.19e-62 209
MsG0480023800.01.T01 MTR_4g048000 31.136 440 299 2 3 439 65 503 1.86e-61 209
MsG0480023800.01.T01 MTR_2g088400 30.594 438 302 2 3 438 53 490 3.46e-61 208
MsG0480023800.01.T01 MTR_2g078960 32.564 433 290 1 1 431 32 464 4.99e-61 207
MsG0480023800.01.T01 MTR_1g109060 29.519 437 302 4 2 434 24 458 6.97e-60 204
MsG0480023800.01.T01 MTR_1g108990 29.638 442 305 3 2 439 25 464 1.36e-59 203
MsG0480023800.01.T01 MTR_2g022980 28.474 439 312 2 3 439 49 487 3.17e-55 192
MsG0480023800.01.T01 MTR_2g088400 30.370 405 280 2 3 405 53 457 9.78e-54 187
MsG0480023800.01.T01 MTR_8g069470 30.112 445 300 5 1 439 49 488 3.56e-52 184
MsG0480023800.01.T01 MTR_5g033100 27.790 439 314 2 3 439 57 494 2.07e-49 177
MsG0480023800.01.T01 MTR_7g082800 29.353 402 263 7 65 455 5 396 4.25e-49 173
MsG0480023800.01.T01 MTR_5g032750 29.955 444 303 5 2 440 36 476 2.64e-48 173
MsG0480023800.01.T01 MTR_5g032720 28.668 443 308 5 3 440 37 476 9.98e-48 171
MsG0480023800.01.T01 MTR_8g063590 28.777 417 294 2 25 438 76 492 6.46e-47 170
MsG0480023800.01.T01 MTR_1g021740 27.335 439 316 2 3 439 36 473 1.32e-46 168
MsG0480023800.01.T01 MTR_6g004220 29.661 354 246 2 1 351 29 382 1.41e-46 167
MsG0480023800.01.T01 MTR_5g090290 28.507 442 306 4 3 438 47 484 9.60e-44 162
MsG0480023800.01.T01 MTR_3g099700 28.054 442 310 5 3 439 47 485 5.14e-40 150
MsG0480023800.01.T01 MTR_6g047610 27.765 443 305 9 2 437 31 465 3.92e-39 148
MsG0480023800.01.T01 MTR_1g100180 26.147 436 314 4 3 434 44 475 9.27e-39 147
MsG0480023800.01.T01 MTR_7g087400 25.806 465 319 6 2 451 30 483 1.91e-38 146
MsG0480023800.01.T01 MTR_3g099720 25.624 441 323 3 3 440 42 480 3.89e-37 142
MsG0480023800.01.T01 MTR_6g004220 30.034 293 200 3 1 290 29 319 7.47e-36 135
MsG0480023800.01.T01 MTR_6g047590 28.442 443 302 9 2 437 31 465 6.50e-35 136
MsG0480023800.01.T01 MTR_6g047640 26.862 443 291 9 2 437 31 447 6.08e-34 133
MsG0480023800.01.T01 MTR_7g087410 24.558 452 314 7 2 439 31 469 1.33e-33 132
MsG0480023800.01.T01 MTR_6g047640 27.540 443 307 8 2 437 31 466 1.63e-33 132
MsG0480023800.01.T01 MTR_5g087930 27.708 397 262 5 19 412 43 417 2.77e-33 131
MsG0480023800.01.T01 MTR_2g078990 31.164 292 191 5 146 431 4 291 3.13e-32 125
MsG0480023800.01.T01 MTR_7g087370 25.727 447 275 10 2 434 30 433 1.70e-31 126
MsG0480023800.01.T01 MTR_6g027190 25.330 454 308 7 2 439 24 462 9.44e-30 121
MsG0480023800.01.T01 MTR_7g087430 25.594 379 275 3 65 439 5 380 7.29e-29 117
MsG0480023800.01.T01 MTR_6g027200 25.053 471 320 8 2 453 36 492 4.76e-28 117
MsG0480023800.01.T01 MTR_7g087410 23.393 389 279 5 61 439 1 380 4.26e-27 112
MsG0480023800.01.T01 MTR_2g079030 32.642 193 130 0 239 431 319 511 3.34e-23 102
MsG0480023800.01.T01 MTR_5g090280 22.549 408 272 6 64 438 4 400 7.22e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023800.01.T01 AT4G29140 65.328 473 153 3 1 462 54 526 0.0 636
MsG0480023800.01.T01 AT5G19700 65.247 446 153 1 2 445 35 480 0.0 615
MsG0480023800.01.T01 AT1G58340 57.684 449 188 1 1 447 56 504 1.04e-180 516
MsG0480023800.01.T01 AT5G52050 47.280 478 233 4 1 466 33 503 1.31e-161 467
MsG0480023800.01.T01 AT4G23030 54.167 456 206 2 1 453 30 485 1.31e-157 456
MsG0480023800.01.T01 AT1G71870 46.300 473 233 4 1 452 22 494 2.88e-154 448
MsG0480023800.01.T01 AT2G38510 48.156 461 235 3 2 458 5 465 1.84e-151 440
MsG0480023800.01.T01 AT5G49130 47.712 459 220 4 1 441 24 480 3.61e-140 412
MsG0480023800.01.T01 AT4G22790 36.674 469 273 5 1 452 28 489 3.03e-86 273
MsG0480023800.01.T01 AT5G52450 35.763 439 280 1 2 438 25 463 8.37e-80 256
MsG0480023800.01.T01 AT1G73700 35.526 456 280 4 2 452 23 469 1.52e-77 250
MsG0480023800.01.T01 AT2G34360 31.818 440 290 3 2 438 26 458 1.30e-69 229
MsG0480023800.01.T01 AT1G15150 30.682 440 301 3 3 439 31 469 8.57e-69 228
MsG0480023800.01.T01 AT1G71140 30.562 445 299 4 1 439 24 464 3.73e-68 226
MsG0480023800.01.T01 AT1G15170 31.818 440 296 3 3 439 34 472 1.11e-67 224
MsG0480023800.01.T01 AT1G66760 32.805 442 291 3 2 439 27 466 6.53e-67 222
MsG0480023800.01.T01 AT1G15160 30.000 440 304 3 3 439 31 469 8.53e-67 222
MsG0480023800.01.T01 AT1G66760 32.574 439 290 3 2 436 27 463 2.52e-65 218
MsG0480023800.01.T01 AT1G64820 29.932 441 307 1 1 439 27 467 6.18e-64 215
MsG0480023800.01.T01 AT1G66780 29.762 420 293 1 22 439 54 473 1.91e-62 211
MsG0480023800.01.T01 AT1G15180 31.973 441 294 5 3 439 35 473 1.06e-61 209
MsG0480023800.01.T01 AT2G04050 32.200 441 293 5 3 439 27 465 1.26e-59 203
MsG0480023800.01.T01 AT3G23550 30.415 434 298 3 1 431 29 461 2.04e-59 202
MsG0480023800.01.T01 AT1G61890 30.043 466 313 3 1 463 45 500 3.03e-58 200
MsG0480023800.01.T01 AT3G23560 29.724 434 301 3 1 431 37 469 5.68e-58 199
MsG0480023800.01.T01 AT2G34360 29.157 439 261 2 2 438 26 416 6.06e-58 197
MsG0480023800.01.T01 AT1G61890 30.664 437 299 2 1 434 45 480 1.55e-57 198
MsG0480023800.01.T01 AT1G11670 29.909 438 305 1 3 438 50 487 4.88e-57 197
MsG0480023800.01.T01 AT2G04040 29.613 439 307 1 3 439 27 465 5.03e-57 196
MsG0480023800.01.T01 AT4G21910 29.613 439 306 2 3 439 55 492 1.42e-56 196
MsG0480023800.01.T01 AT4G21910 29.613 439 306 2 3 439 55 492 1.42e-56 196
MsG0480023800.01.T01 AT4G21910 29.841 439 305 2 3 439 57 494 1.66e-56 196
MsG0480023800.01.T01 AT4G21910 29.841 439 305 2 3 439 57 494 1.66e-56 196
MsG0480023800.01.T01 AT2G04070 30.531 452 307 4 3 449 27 476 1.97e-56 194
MsG0480023800.01.T01 AT2G04080 30.820 451 305 6 3 448 27 475 7.47e-56 193
MsG0480023800.01.T01 AT3G26590 28.929 439 309 2 3 439 45 482 8.59e-56 193
MsG0480023800.01.T01 AT2G04100 28.733 442 307 3 3 439 30 468 3.32e-55 191
MsG0480023800.01.T01 AT2G04080 30.474 443 302 5 3 441 27 467 5.23e-54 188
MsG0480023800.01.T01 AT2G04100 28.604 437 304 3 3 434 30 463 1.32e-53 187
MsG0480023800.01.T01 AT2G04090 27.563 439 316 1 3 439 30 468 1.45e-53 187
MsG0480023800.01.T01 AT3G21690 28.311 438 312 2 3 438 52 489 1.14e-52 185
MsG0480023800.01.T01 AT5G38030 28.571 441 308 4 3 439 45 482 1.60e-52 184
MsG0480023800.01.T01 AT4G21903 29.369 412 288 2 30 439 80 490 1.80e-52 184
MsG0480023800.01.T01 AT1G15170 30.484 351 240 3 92 439 4 353 3.98e-52 180
MsG0480023800.01.T01 AT4G21903 29.584 409 285 2 30 436 80 487 4.83e-52 184
MsG0480023800.01.T01 AT1G61890 30.637 408 279 2 1 405 45 451 5.19e-51 180
MsG0480023800.01.T01 AT3G26590 29.365 378 264 2 64 439 4 380 9.70e-50 175
MsG0480023800.01.T01 AT4G00350 28.311 438 310 2 3 438 88 523 1.34e-49 177
MsG0480023800.01.T01 AT1G15150 29.630 351 243 3 92 439 4 353 3.25e-49 172
MsG0480023800.01.T01 AT1G66760 32.791 369 242 3 2 366 27 393 7.06e-49 172
MsG0480023800.01.T01 AT4G21903 29.443 377 264 1 65 439 5 381 1.12e-48 172
MsG0480023800.01.T01 AT1G23300 30.112 445 296 6 3 439 44 481 1.79e-48 174
MsG0480023800.01.T01 AT1G47530 28.442 443 308 6 2 439 34 472 9.85e-48 171
MsG0480023800.01.T01 AT3G23560 31.579 323 219 1 1 321 37 359 3.81e-47 168
MsG0480023800.01.T01 AT5G10420 28.345 441 312 3 3 440 38 477 8.02e-47 169
MsG0480023800.01.T01 AT3G59030 28.571 441 307 3 3 438 51 488 4.81e-46 167
MsG0480023800.01.T01 AT5G44050 28.507 442 310 4 3 440 40 479 1.79e-45 166
MsG0480023800.01.T01 AT1G12950 27.232 448 305 7 3 439 67 504 1.27e-44 164
MsG0480023800.01.T01 AT1G33090 28.341 434 304 3 3 432 36 466 2.39e-42 157
MsG0480023800.01.T01 AT1G33100 29.773 440 290 8 3 432 33 463 1.01e-41 155
MsG0480023800.01.T01 AT4G25640 28.111 434 308 2 3 434 34 465 1.77e-41 154
MsG0480023800.01.T01 AT4G25640 28.111 434 308 2 3 434 34 465 3.08e-41 154
MsG0480023800.01.T01 AT5G65380 27.045 440 315 4 3 438 37 474 4.51e-41 153
MsG0480023800.01.T01 AT1G66760 30.448 335 227 3 106 436 3 335 7.04e-41 149
MsG0480023800.01.T01 AT1G33110 27.500 440 300 8 3 432 36 466 2.79e-40 151
MsG0480023800.01.T01 AT1G33080 27.293 458 309 8 2 446 35 481 1.90e-38 146
MsG0480023800.01.T01 AT4G25640 28.141 398 282 2 3 398 34 429 1.94e-37 143
MsG0480023800.01.T01 AT1G47530 26.842 380 269 6 65 439 5 380 1.94e-37 141
MsG0480023800.01.T01 AT1G33080 26.923 442 306 5 2 434 35 468 3.35e-37 142
MsG0480023800.01.T01 AT3G03620 26.517 445 310 9 2 437 36 472 1.64e-34 135
MsG0480023800.01.T01 AT3G03620 26.517 445 310 9 2 437 36 472 1.64e-34 135
MsG0480023800.01.T01 AT3G59030 28.302 371 258 3 3 368 51 418 1.07e-33 132
MsG0480023800.01.T01 AT5G17700 26.622 447 311 10 2 439 33 471 1.89e-32 129
MsG0480023800.01.T01 AT5G17700 26.622 447 311 10 2 439 33 471 1.89e-32 129
MsG0480023800.01.T01 AT1G15180 30.827 266 178 5 92 353 4 267 1.57e-30 122
MsG0480023800.01.T01 AT1G33110 26.415 371 262 5 3 367 36 401 7.04e-28 115
MsG0480023800.01.T01 AT5G17700 26.087 322 225 8 2 316 33 348 7.03e-17 82.8

Find 165 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGTAACCGTTGCTTCTA+TGG 0.153186 4:-89969699 MsG0480023800.01.T01:CDS
GCAAGTGAGGCTAATGTAAT+TGG 0.227296 4:+89970007 None:intergenic
TGAGCCATGGTTGTGATCTT+TGG 0.229428 4:+89970121 None:intergenic
TCGGCCCAGGTTTGTTGTGC+TGG 0.242952 4:-89969233 MsG0480023800.01.T01:CDS
ATCGCGTATGTTTGGTTAAC+TGG 0.250226 4:-89969875 MsG0480023800.01.T01:CDS
CGGTGGGTTGCGGTGTTGTC+AGG 0.259072 4:-89969385 MsG0480023800.01.T01:CDS
TATTCTTCGGCTGACTTCTT+TGG 0.260087 4:-89969453 MsG0480023800.01.T01:CDS
TACCAGTCAACAACGGTTTC+TGG 0.265851 4:+89969099 None:intergenic
TGGTTGTGATCTTTGGGTTC+TGG 0.308597 4:+89970128 None:intergenic
TGGGTTTCGCGGGCTTTGGT+TGG 0.322674 4:-89969264 MsG0480023800.01.T01:CDS
TTGGAAAAGCAAGCATCATT+AGG 0.333580 4:+89970452 None:intergenic
ATAAGAGCTGTTATGGCTAT+TGG 0.334848 4:+89970433 None:intergenic
GAGCCATGGTTGTGATCTTT+GGG 0.354470 4:+89970122 None:intergenic
AAGCTGCGTTTCCGTTTGTT+TGG 0.358580 4:-89969774 MsG0480023800.01.T01:CDS
GAATCTTGGTGCTTTCTATA+TGG 0.360423 4:-89969330 MsG0480023800.01.T01:CDS
AGGGTTAAGGATAGGAGTTT+AGG 0.362643 4:+89970238 None:intergenic
TGCAGAGGCAGCTGGGACTC+CGG 0.363910 4:+89969928 None:intergenic
TGGAAAAGCAAGCATCATTA+GGG 0.369962 4:+89970453 None:intergenic
ACATGTCACAAATCCTCATT+TGG 0.370537 4:-89970156 MsG0480023800.01.T01:CDS
ATAGAAAATAAGAGCTGTTA+TGG 0.375099 4:+89970426 None:intergenic
TGGCGGTTGTGCTTGCGTTT+TGG 0.379139 4:-89969295 MsG0480023800.01.T01:CDS
CACAGGGATGAGGTTTCGTT+GGG 0.383156 4:-89969501 MsG0480023800.01.T01:CDS
CGGCCCAGGTTTGTTGTGCT+GGG 0.385823 4:-89969232 MsG0480023800.01.T01:CDS
GTTGGGCTTGCTCTCGGCCC+AGG 0.386009 4:-89969246 MsG0480023800.01.T01:CDS
TCTTTGGCACTTCCAATCCT+TGG 0.387985 4:-89969437 MsG0480023800.01.T01:CDS
CCTCTCTGTTCACAAGCCTT+TGG 0.389078 4:-89970271 MsG0480023800.01.T01:CDS
GTCTTTCACTTCGGTTTCAC+CGG 0.390820 4:-89969947 MsG0480023800.01.T01:CDS
ACGTTGGGTTTCGCGGGCTT+TGG 0.391761 4:-89969268 MsG0480023800.01.T01:CDS
ATTACATTAGCCTCACTTGC+TGG 0.391945 4:-89970004 MsG0480023800.01.T01:CDS
GGGTTTCGCGGGCTTTGGTT+GGG 0.394583 4:-89969263 MsG0480023800.01.T01:CDS
GTTAAGCCACATGAAGGAAA+TGG 0.397403 4:+89970177 None:intergenic
TTGGAGGCTGCAGAGGCAGC+TGG 0.401997 4:+89969920 None:intergenic
ATATTCGTCGCTGTAATGAT+AGG 0.402264 4:-89969545 MsG0480023800.01.T01:CDS
ACCGTAACCGTTGCTTCTAT+GGG 0.420509 4:-89969698 MsG0480023800.01.T01:CDS
CTGCTGATGAAAATATTCTT+CGG 0.422541 4:-89969466 MsG0480023800.01.T01:CDS
TGGGAATGGAACATAGTAAC+AGG 0.424607 4:+89970197 None:intergenic
AAGACAAAGAAGTAATTTAG+TGG 0.425047 4:+89969965 None:intergenic
CACGAAGGTAAATACGTATA+GGG 0.425365 4:+89970047 None:intergenic
CCACAGGGATGAGGTTTCGT+TGG 0.426710 4:-89969502 MsG0480023800.01.T01:CDS
AATGAATTTGTGATGAGATC+AGG 0.427364 4:+89970076 None:intergenic
CACGCGTGTTGGAAACGAGC+TGG 0.430440 4:-89969612 MsG0480023800.01.T01:CDS
CTTGGTGCTTTCTATATGGT+GGG 0.430875 4:-89969326 MsG0480023800.01.T01:CDS
GTTCTCTCCGGTCTCTCTCT+CGG 0.430975 4:-89970301 MsG0480023800.01.T01:CDS
TGTTCCTCATCGCGTATGTT+TGG 0.431746 4:-89969883 MsG0480023800.01.T01:CDS
GCACGAAGGTAAATACGTAT+AGG 0.432233 4:+89970046 None:intergenic
AGAAGTAATTTAGTGGAAGA+TGG 0.436636 4:+89969972 None:intergenic
GGTGGGTTGCGGTGTTGTCA+GGG 0.445474 4:-89969384 MsG0480023800.01.T01:CDS
GATGCAACGTTGAAGGGTTA+AGG 0.451908 4:+89970225 None:intergenic
TGAACCCAGCACAACAAACC+TGG 0.453660 4:+89969228 None:intergenic
GAAGGCGATGGCGAGTGAAC+CGG 0.458073 4:+89970345 None:intergenic
ATGATGTTCCTAGGCTATCT+AGG 0.458663 4:-89970385 MsG0480023800.01.T01:CDS
CCATTCCCATTTCCTTCATG+TGG 0.460327 4:-89970183 MsG0480023800.01.T01:CDS
GCGTTTCCGTTTGTTTGGAA+TGG 0.460881 4:-89969769 MsG0480023800.01.T01:CDS
TTGCTTACTTGTGTGGAGAA+TGG 0.463824 4:-89969152 MsG0480023800.01.T01:CDS
TTCCATTCCGAGAGAGAGAC+CGG 0.465257 4:+89970294 None:intergenic
TTTAGGACGGTTTGCTCCAA+AGG 0.467132 4:+89970255 None:intergenic
TGGTTTGACGTTGGGTTTCG+CGG 0.472974 4:-89969275 MsG0480023800.01.T01:CDS
GGTTCTGGTGCAACCAAATG+AGG 0.474606 4:+89970143 None:intergenic
ACCGGAGAGAACGGAGTAGC+CGG 0.474649 4:+89970312 None:intergenic
AATGGAATGGGTAGTGATGA+TGG 0.476279 4:-89969134 MsG0480023800.01.T01:CDS
TTAAGCCACATGAAGGAAAT+GGG 0.477163 4:+89970178 None:intergenic
GCTTTGGTTGGGCTTGCTCT+CGG 0.477408 4:-89969252 MsG0480023800.01.T01:CDS
TGAGGAACAACACAATGAAT+AGG 0.480105 4:+89969897 None:intergenic
TTCACATTCGCCGCCACACC+TGG 0.480133 4:+89969350 None:intergenic
AGTGATGATGGGATGATAAA+CGG 0.483280 4:-89969122 MsG0480023800.01.T01:CDS
ATCGCCTTCGCCAACATCAC+CGG 0.484058 4:-89970331 MsG0480023800.01.T01:CDS
CTCCGGTCTCTCTCTCGGAA+TGG 0.485898 4:-89970296 MsG0480023800.01.T01:CDS
TGTCCTCAGACGGTGGGTTG+CGG 0.495604 4:-89969395 MsG0480023800.01.T01:CDS
GTTTCCAACACGCGTGGAAA+CGG 0.498770 4:+89969619 None:intergenic
TATGTCTTTCCATCTTCACT+TGG 0.500525 4:-89969647 MsG0480023800.01.T01:CDS
ATGTGATTGCGATCACTGAT+TGG 0.500968 4:-89969199 MsG0480023800.01.T01:CDS
CCAAGCTAAGTTATCATCCC+TGG 0.503107 4:-89969573 MsG0480023800.01.T01:CDS
CAAGTGAGGCTAATGTAATT+GGG 0.503400 4:+89970008 None:intergenic
GGAAGAGGATGCAACGTTGA+AGG 0.504510 4:+89970218 None:intergenic
CCCCATAGAAGCAACGGTTA+CGG 0.505664 4:+89969697 None:intergenic
CCAGGGATGATAACTTAGCT+TGG 0.506191 4:+89969573 None:intergenic
GTAGAGAAATTCTCTCCGGC+TGG 0.506195 4:-89969823 MsG0480023800.01.T01:CDS
GGTTTGACGTTGGGTTTCGC+GGG 0.507344 4:-89969274 MsG0480023800.01.T01:CDS
AACAGCAAGGCCAGGTGTGG+CGG 0.508991 4:-89969360 MsG0480023800.01.T01:CDS
ACGGCTAATCCAAGTGAAGA+TGG 0.509085 4:+89969638 None:intergenic
TGTGATTGCGATCACTGATT+GGG 0.512724 4:-89969198 MsG0480023800.01.T01:CDS
ATCCTTGGATTGTGTGAACT+TGG 0.512999 4:-89969422 MsG0480023800.01.T01:CDS
ACCGGCTACTCCGTTCTCTC+CGG 0.514145 4:-89970313 MsG0480023800.01.T01:CDS
ATGGTGTCCATGATGTTCCT+AGG 0.514854 4:-89970394 MsG0480023800.01.T01:CDS
CCACCACCATTCCAAACAAA+CGG 0.515374 4:+89969763 None:intergenic
TACTTCTTTGTCTTTCACTT+CGG 0.515725 4:-89969956 MsG0480023800.01.T01:CDS
CGCAGCTTGGCGTGGCAAGT+CGG 0.517568 4:+89969789 None:intergenic
GTCAGGGGAACAGCAAGGCC+AGG 0.521102 4:-89969368 MsG0480023800.01.T01:CDS
AACGCAAGCACAACCGCCAT+TGG 0.524005 4:+89969299 None:intergenic
TTTCCGTTTGTTTGGAATGG+TGG 0.524547 4:-89969766 MsG0480023800.01.T01:CDS
CCGTTTGTTTGGAATGGTGG+TGG 0.525312 4:-89969763 MsG0480023800.01.T01:CDS
GAGAGAGAGACCGGAGAGAA+CGG 0.527431 4:+89970303 None:intergenic
TCTTGGTGCTTTCTATATGG+TGG 0.529459 4:-89969327 MsG0480023800.01.T01:CDS
TGGAGGCTGCAGAGGCAGCT+GGG 0.530384 4:+89969921 None:intergenic
GAGGAGAGTGCCAGCAAGTG+AGG 0.531668 4:+89969994 None:intergenic
AACGGAGTAGCCGGTGATGT+TGG 0.532013 4:+89970321 None:intergenic
TGGAACATAGTAACAGGAAG+AGG 0.532090 4:+89970203 None:intergenic
GGCCAGAAACCGTTGTTGAC+TGG 0.532184 4:-89969101 MsG0480023800.01.T01:CDS
AGTTCACACAATCCAAGGAT+TGG 0.532587 4:+89969425 None:intergenic
TGACATGTTAAGCCACATGA+AGG 0.533931 4:+89970171 None:intergenic
CAGCGACGAATATTGCTACC+AGG 0.535583 4:+89969555 None:intergenic
GGCGTGGCAAGTCGGAGTAA+AGG 0.536544 4:+89969797 None:intergenic
CGTATTTACCTTCGTGCACA+AGG 0.537215 4:-89970040 MsG0480023800.01.T01:CDS
GGTGATGTTGGCGAAGGCGA+TGG 0.540239 4:+89970333 None:intergenic
TAGATAGCCTAGGAACATCA+TGG 0.544584 4:+89970387 None:intergenic
GAAGAGGATGCAACGTTGAA+GGG 0.547608 4:+89970219 None:intergenic
ACGCGTGTTGGAAACGAGCT+GGG 0.550932 4:-89969611 MsG0480023800.01.T01:CDS
CTATATGGTGGGGATGCCAA+TGG 0.550956 4:-89969315 MsG0480023800.01.T01:CDS
TACCAAGTTCACACAATCCA+AGG 0.551400 4:+89969420 None:intergenic
GGGAACAGCAAGGCCAGGTG+TGG 0.554355 4:-89969363 MsG0480023800.01.T01:CDS
GAACAACACAATGAATAGGT+TGG 0.554841 4:+89969901 None:intergenic
CCACATGAAGGAAATGGGAA+TGG 0.555412 4:+89970183 None:intergenic
GGAGAACTTGAACTTGCAGC+CGG 0.559934 4:-89970364 MsG0480023800.01.T01:CDS
ATGAATTTGTGATGAGATCA+GGG 0.560522 4:+89970077 None:intergenic
TGCCCACTTGCTTACTTGTG+TGG 0.561216 4:-89969159 MsG0480023800.01.T01:CDS
TGGTAACTGTCCTCAGACGG+TGG 0.568794 4:-89969402 MsG0480023800.01.T01:CDS
ACACCGCAACCCACCGTCTG+AGG 0.569573 4:+89969392 None:intergenic
AGTAATTTAGTGGAAGATGG+AGG 0.572015 4:+89969975 None:intergenic
GAATAGGTTGGAGGCTGCAG+AGG 0.573910 4:+89969913 None:intergenic
CTGGCATACACTGCGCCACA+TGG 0.574182 4:-89969856 MsG0480023800.01.T01:CDS
TTAGCCGTTTCCACGCGTGT+TGG 0.576266 4:-89969623 MsG0480023800.01.T01:CDS
CAAGTTCTCCTAGATAGCCT+AGG 0.576301 4:+89970377 None:intergenic
AACGTTGAAGGGTTAAGGAT+AGG 0.580029 4:+89970230 None:intergenic
GTGGCGGCGAATGTGAATCT+TGG 0.580181 4:-89969344 MsG0480023800.01.T01:CDS
TAAAATCCCCATAGAAGCAA+CGG 0.581538 4:+89969691 None:intergenic
GTGGGTTGCGGTGTTGTCAG+GGG 0.581939 4:-89969383 MsG0480023800.01.T01:CDS
ATAACTTAGCTTGGAAAGGA+CGG 0.583020 4:+89969582 None:intergenic
ATGGAATGGGTAGTGATGAT+GGG 0.586061 4:-89969133 MsG0480023800.01.T01:CDS
AACGGAAACGCAGCTTGGCG+TGG 0.586430 4:+89969781 None:intergenic
GTTGACTGGTATTGTTGTTG+AGG 0.589869 4:-89969087 MsG0480023800.01.T01:CDS
AAACAAACGGAAACGCAGCT+TGG 0.594222 4:+89969776 None:intergenic
GATGATAACTTAGCTTGGAA+AGG 0.597780 4:+89969578 None:intergenic
ATAGAAGCAACGGTTACGGT+GGG 0.602058 4:+89969701 None:intergenic
ACTTGTGTGGAGAATGGAAT+GGG 0.602809 4:-89969146 MsG0480023800.01.T01:CDS
TTAAGGATAGGAGTTTAGGA+CGG 0.604091 4:+89970242 None:intergenic
TCGGAGTAAAGGCTTCCAGC+CGG 0.605342 4:+89969808 None:intergenic
CAACACAATGAATAGGTTGG+AGG 0.605721 4:+89969904 None:intergenic
CCGGAGAGAATTTCTCTACT+CGG 0.606415 4:+89969827 None:intergenic
CCGTAACCGTTGCTTCTATG+GGG 0.611433 4:-89969697 MsG0480023800.01.T01:CDS
CATAGAAGCAACGGTTACGG+TGG 0.617561 4:+89969700 None:intergenic
TCTCCACACAAGTAAGCAAG+TGG 0.626487 4:+89969156 None:intergenic
GTAGCCGGTGATGTTGGCGA+AGG 0.633540 4:+89970327 None:intergenic
GAACCCAGCACAACAAACCT+GGG 0.635945 4:+89969229 None:intergenic
GGTAACTGTCCTCAGACGGT+GGG 0.641343 4:-89969401 MsG0480023800.01.T01:CDS
CCGAGTAGAGAAATTCTCTC+CGG 0.642731 4:-89969827 MsG0480023800.01.T01:CDS
TTGGTGCTTTCTATATGGTG+GGG 0.643884 4:-89969325 MsG0480023800.01.T01:CDS
TAGGAACATCATGGACACCA+TGG 0.647534 4:+89970396 None:intergenic
ACTTGGTAACTGTCCTCAGA+CGG 0.655240 4:-89969405 MsG0480023800.01.T01:CDS
TCTACTCGGCGCTGTCCATG+TGG 0.656110 4:+89969841 None:intergenic
AGCGACGAATATTGCTACCA+GGG 0.668909 4:+89969556 None:intergenic
TACTTGTGTGGAGAATGGAA+TGG 0.668929 4:-89969147 MsG0480023800.01.T01:CDS
GAAGGTAAATACGTATAGGG+TGG 0.671979 4:+89970050 None:intergenic
TTAACCAAACATACGCGATG+AGG 0.672780 4:+89969879 None:intergenic
TATGGTGGGGATGCCAATGG+CGG 0.673877 4:-89969312 MsG0480023800.01.T01:CDS
CAGCTCGTTTCCAACACGCG+TGG 0.677563 4:+89969613 None:intergenic
GTGTTGTCAGGGGAACAGCA+AGG 0.686076 4:-89969373 MsG0480023800.01.T01:CDS
GAACCCAAAGATCACAACCA+TGG 0.692294 4:-89970125 MsG0480023800.01.T01:CDS
CTCCACACAAGTAAGCAAGT+GGG 0.696610 4:+89969157 None:intergenic
GATTAGATATGTGTGAGCCA+TGG 0.701135 4:+89970108 None:intergenic
CCAAAGGCTTGTGAACAGAG+AGG 0.712249 4:+89970271 None:intergenic
ACAGGGATGAGGTTTCGTTG+GGG 0.713111 4:-89969500 MsG0480023800.01.T01:CDS
TAGAAGCAACGGTTACGGTG+GGG 0.713451 4:+89969702 None:intergenic
GAGTGATTCCTTGTGCACGA+AGG 0.717544 4:+89970032 None:intergenic
ACAACAATACCAGTCAACAA+CGG 0.720742 4:+89969092 None:intergenic
CCAACGAAACCTCATCCCTG+TGG 0.753980 4:+89969502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGACAAAGAAGTAATTTAG+TGG + Chr4:89969589-89969608 None:intergenic 25.0%
! ATAGAAAATAAGAGCTGTTA+TGG + Chr4:89969128-89969147 None:intergenic 25.0%
!! GAAGTAATGATCATTTTATG+TGG - Chr4:89969814-89969833 MsG0480023800.01.T01:CDS 25.0%
AATGAATTTGTGATGAGATC+AGG + Chr4:89969478-89969497 None:intergenic 30.0%
AGAAGTAATTTAGTGGAAGA+TGG + Chr4:89969582-89969601 None:intergenic 30.0%
ATGAATTTGTGATGAGATCA+GGG + Chr4:89969477-89969496 None:intergenic 30.0%
CTGCTGATGAAAATATTCTT+CGG - Chr4:89970085-89970104 MsG0480023800.01.T01:CDS 30.0%
TACTTCTTTGTCTTTCACTT+CGG - Chr4:89969595-89969614 MsG0480023800.01.T01:CDS 30.0%
! CATTTTATGTGGTTTACTTG+TGG - Chr4:89969825-89969844 MsG0480023800.01.T01:CDS 30.0%
! TATTTTCTATTCTCGTTCCA+TGG - Chr4:89969138-89969157 MsG0480023800.01.T01:CDS 30.0%
ACAACAATACCAGTCAACAA+CGG + Chr4:89970462-89970481 None:intergenic 35.0%
ACATGTCACAAATCCTCATT+TGG - Chr4:89969395-89969414 MsG0480023800.01.T01:CDS 35.0%
AGTAATTTAGTGGAAGATGG+AGG + Chr4:89969579-89969598 None:intergenic 35.0%
ATAAGAGCTGTTATGGCTAT+TGG + Chr4:89969121-89969140 None:intergenic 35.0%
ATATTCGTCGCTGTAATGAT+AGG - Chr4:89970006-89970025 MsG0480023800.01.T01:CDS 35.0%
CAAGTGAGGCTAATGTAATT+GGG + Chr4:89969546-89969565 None:intergenic 35.0%
CACGAAGGTAAATACGTATA+GGG + Chr4:89969507-89969526 None:intergenic 35.0%
GAACAACACAATGAATAGGT+TGG + Chr4:89969653-89969672 None:intergenic 35.0%
TAAAATCCCCATAGAAGCAA+CGG + Chr4:89969863-89969882 None:intergenic 35.0%
TATGTCTTTCCATCTTCACT+TGG - Chr4:89969904-89969923 MsG0480023800.01.T01:CDS 35.0%
TGAGGAACAACACAATGAAT+AGG + Chr4:89969657-89969676 None:intergenic 35.0%
TGGAAAAGCAAGCATCATTA+GGG + Chr4:89969101-89969120 None:intergenic 35.0%
TTAAGCCACATGAAGGAAAT+GGG + Chr4:89969376-89969395 None:intergenic 35.0%
TTAAGGATAGGAGTTTAGGA+CGG + Chr4:89969312-89969331 None:intergenic 35.0%
TTGGAAAAGCAAGCATCATT+AGG + Chr4:89969102-89969121 None:intergenic 35.0%
! ATAACTTAGCTTGGAAAGGA+CGG + Chr4:89969972-89969991 None:intergenic 35.0%
! GATGATAACTTAGCTTGGAA+AGG + Chr4:89969976-89969995 None:intergenic 35.0%
!! AATGATAGGTTTTTCAGCGA+CGG - Chr4:89970020-89970039 MsG0480023800.01.T01:CDS 35.0%
!! AGTGATGATGGGATGATAAA+CGG - Chr4:89970429-89970448 MsG0480023800.01.T01:CDS 35.0%
!! GAATCTTGGTGCTTTCTATA+TGG - Chr4:89970221-89970240 MsG0480023800.01.T01:CDS 35.0%
AACGTTGAAGGGTTAAGGAT+AGG + Chr4:89969324-89969343 None:intergenic 40.0%
AATGGAATGGGTAGTGATGA+TGG - Chr4:89970417-89970436 MsG0480023800.01.T01:CDS 40.0%
ACTTGTGTGGAGAATGGAAT+GGG - Chr4:89970405-89970424 MsG0480023800.01.T01:CDS 40.0%
AGGGTTAAGGATAGGAGTTT+AGG + Chr4:89969316-89969335 None:intergenic 40.0%
AGTTCACACAATCCAAGGAT+TGG + Chr4:89970129-89970148 None:intergenic 40.0%
ATCCTTGGATTGTGTGAACT+TGG - Chr4:89970129-89970148 MsG0480023800.01.T01:CDS 40.0%
ATCGCGTATGTTTGGTTAAC+TGG - Chr4:89969676-89969695 MsG0480023800.01.T01:CDS 40.0%
ATGATGTTCCTAGGCTATCT+AGG - Chr4:89969166-89969185 MsG0480023800.01.T01:CDS 40.0%
ATGGAATGGGTAGTGATGAT+GGG - Chr4:89970418-89970437 MsG0480023800.01.T01:CDS 40.0%
ATGTGATTGCGATCACTGAT+TGG - Chr4:89970352-89970371 MsG0480023800.01.T01:CDS 40.0%
GAAGGTAAATACGTATAGGG+TGG + Chr4:89969504-89969523 None:intergenic 40.0%
GATTAGATATGTGTGAGCCA+TGG + Chr4:89969446-89969465 None:intergenic 40.0%
GCAAGTGAGGCTAATGTAAT+TGG + Chr4:89969547-89969566 None:intergenic 40.0%
GCACGAAGGTAAATACGTAT+AGG + Chr4:89969508-89969527 None:intergenic 40.0%
GTTAAGCCACATGAAGGAAA+TGG + Chr4:89969377-89969396 None:intergenic 40.0%
TACCAAGTTCACACAATCCA+AGG + Chr4:89970134-89970153 None:intergenic 40.0%
TACTTGTGTGGAGAATGGAA+TGG - Chr4:89970404-89970423 MsG0480023800.01.T01:CDS 40.0%
TAGATAGCCTAGGAACATCA+TGG + Chr4:89969167-89969186 None:intergenic 40.0%
TGACATGTTAAGCCACATGA+AGG + Chr4:89969383-89969402 None:intergenic 40.0%
TGGAACATAGTAACAGGAAG+AGG + Chr4:89969351-89969370 None:intergenic 40.0%
TGGGAATGGAACATAGTAAC+AGG + Chr4:89969357-89969376 None:intergenic 40.0%
TTAACCAAACATACGCGATG+AGG + Chr4:89969675-89969694 None:intergenic 40.0%
TTGCTTACTTGTGTGGAGAA+TGG - Chr4:89970399-89970418 MsG0480023800.01.T01:CDS 40.0%
! ATTACATTAGCCTCACTTGC+TGG - Chr4:89969547-89969566 MsG0480023800.01.T01:CDS 40.0%
! CAACACAATGAATAGGTTGG+AGG + Chr4:89969650-89969669 None:intergenic 40.0%
! GTTGACTGGTATTGTTGTTG+AGG - Chr4:89970464-89970483 MsG0480023800.01.T01:CDS 40.0%
! TATTCTTCGGCTGACTTCTT+TGG - Chr4:89970098-89970117 MsG0480023800.01.T01:CDS 40.0%
! TGTGATTGCGATCACTGATT+GGG - Chr4:89970353-89970372 MsG0480023800.01.T01:CDS 40.0%
! TTGGTGCTTTCTATATGGTG+GGG - Chr4:89970226-89970245 MsG0480023800.01.T01:CDS 40.0%
! TTTCCGTTTGTTTGGAATGG+TGG - Chr4:89969785-89969804 MsG0480023800.01.T01:CDS 40.0%
!! CTTGGTGCTTTCTATATGGT+GGG - Chr4:89970225-89970244 MsG0480023800.01.T01:CDS 40.0%
!! TCTTGGTGCTTTCTATATGG+TGG - Chr4:89970224-89970243 MsG0480023800.01.T01:CDS 40.0%
!!! TTGCGTTTTGGTTTGACGTT+GGG - Chr4:89970268-89970287 MsG0480023800.01.T01:CDS 40.0%
AAACAAACGGAAACGCAGCT+TGG + Chr4:89969778-89969797 None:intergenic 45.0%
AAGCTGCGTTTCCGTTTGTT+TGG - Chr4:89969777-89969796 MsG0480023800.01.T01:CDS 45.0%
ACCGTAACCGTTGCTTCTAT+GGG - Chr4:89969853-89969872 MsG0480023800.01.T01:CDS 45.0%
ACGGCTAATCCAAGTGAAGA+TGG + Chr4:89969916-89969935 None:intergenic 45.0%
AGCGACGAATATTGCTACCA+GGG + Chr4:89969998-89970017 None:intergenic 45.0%
ATAGAAGCAACGGTTACGGT+GGG + Chr4:89969853-89969872 None:intergenic 45.0%
ATGGTGTCCATGATGTTCCT+AGG - Chr4:89969157-89969176 MsG0480023800.01.T01:CDS 45.0%
CAAGTTCTCCTAGATAGCCT+AGG + Chr4:89969177-89969196 None:intergenic 45.0%
CCAAGCTAAGTTATCATCCC+TGG - Chr4:89969978-89969997 MsG0480023800.01.T01:CDS 45.0%
CCACATGAAGGAAATGGGAA+TGG + Chr4:89969371-89969390 None:intergenic 45.0%
CCACCACCATTCCAAACAAA+CGG + Chr4:89969791-89969810 None:intergenic 45.0%
CCAGGGATGATAACTTAGCT+TGG + Chr4:89969981-89970000 None:intergenic 45.0%
CCATTCCCATTTCCTTCATG+TGG - Chr4:89969368-89969387 MsG0480023800.01.T01:CDS 45.0%
CCGAGTAGAGAAATTCTCTC+CGG - Chr4:89969724-89969743 MsG0480023800.01.T01:CDS 45.0%
CCGGAGAGAATTTCTCTACT+CGG + Chr4:89969727-89969746 None:intergenic 45.0%
CGTATTTACCTTCGTGCACA+AGG - Chr4:89969511-89969530 MsG0480023800.01.T01:CDS 45.0%
CTCCACACAAGTAAGCAAGT+GGG + Chr4:89970397-89970416 None:intergenic 45.0%
GAACCCAAAGATCACAACCA+TGG - Chr4:89969426-89969445 MsG0480023800.01.T01:CDS 45.0%
GAAGAGGATGCAACGTTGAA+GGG + Chr4:89969335-89969354 None:intergenic 45.0%
GAGCCATGGTTGTGATCTTT+GGG + Chr4:89969432-89969451 None:intergenic 45.0%
GATGCAACGTTGAAGGGTTA+AGG + Chr4:89969329-89969348 None:intergenic 45.0%
GCGTTTCCGTTTGTTTGGAA+TGG - Chr4:89969782-89969801 MsG0480023800.01.T01:CDS 45.0%
GTCTTTCACTTCGGTTTCAC+CGG - Chr4:89969604-89969623 MsG0480023800.01.T01:CDS 45.0%
TACCAGTCAACAACGGTTTC+TGG + Chr4:89970455-89970474 None:intergenic 45.0%
TAGGAACATCATGGACACCA+TGG + Chr4:89969158-89969177 None:intergenic 45.0%
TCTCCACACAAGTAAGCAAG+TGG + Chr4:89970398-89970417 None:intergenic 45.0%
TCTTTGGCACTTCCAATCCT+TGG - Chr4:89970114-89970133 MsG0480023800.01.T01:CDS 45.0%
TGAGCCATGGTTGTGATCTT+TGG + Chr4:89969433-89969452 None:intergenic 45.0%
TGTTCCTCATCGCGTATGTT+TGG - Chr4:89969668-89969687 MsG0480023800.01.T01:CDS 45.0%
! ACTTGGTAACTGTCCTCAGA+CGG - Chr4:89970146-89970165 MsG0480023800.01.T01:CDS 45.0%
! TGGTTGTGATCTTTGGGTTC+TGG + Chr4:89969426-89969445 None:intergenic 45.0%
! TTTAGGACGGTTTGCTCCAA+AGG + Chr4:89969299-89969318 None:intergenic 45.0%
!!! CTTGCGTTTTGGTTTGACGT+TGG - Chr4:89970267-89970286 MsG0480023800.01.T01:CDS 45.0%
ACAGGGATGAGGTTTCGTTG+GGG - Chr4:89970051-89970070 MsG0480023800.01.T01:CDS 50.0%
CACAGGGATGAGGTTTCGTT+GGG - Chr4:89970050-89970069 MsG0480023800.01.T01:CDS 50.0%
CACCGTAACCGTTGCTTCTA+TGG - Chr4:89969852-89969871 MsG0480023800.01.T01:CDS 50.0%
CAGCGACGAATATTGCTACC+AGG + Chr4:89969999-89970018 None:intergenic 50.0%
CATAGAAGCAACGGTTACGG+TGG + Chr4:89969854-89969873 None:intergenic 50.0%
CCAAAGGCTTGTGAACAGAG+AGG + Chr4:89969283-89969302 None:intergenic 50.0%
CCCCATAGAAGCAACGGTTA+CGG + Chr4:89969857-89969876 None:intergenic 50.0%
CCGTAACCGTTGCTTCTATG+GGG - Chr4:89969854-89969873 MsG0480023800.01.T01:CDS 50.0%
CCTCTCTGTTCACAAGCCTT+TGG - Chr4:89969280-89969299 MsG0480023800.01.T01:CDS 50.0%
GAACCCAGCACAACAAACCT+GGG + Chr4:89970325-89970344 None:intergenic 50.0%
GAGTGATTCCTTGTGCACGA+AGG + Chr4:89969522-89969541 None:intergenic 50.0%
GGAAGAGGATGCAACGTTGA+AGG + Chr4:89969336-89969355 None:intergenic 50.0%
GGAGAACTTGAACTTGCAGC+CGG - Chr4:89969187-89969206 MsG0480023800.01.T01:CDS 50.0%
GTAGAGAAATTCTCTCCGGC+TGG - Chr4:89969728-89969747 MsG0480023800.01.T01:CDS 50.0%
GTTTCCAACACGCGTGGAAA+CGG + Chr4:89969935-89969954 None:intergenic 50.0%
TAGAAGCAACGGTTACGGTG+GGG + Chr4:89969852-89969871 None:intergenic 50.0%
TGAACCCAGCACAACAAACC+TGG + Chr4:89970326-89970345 None:intergenic 50.0%
TGCCCACTTGCTTACTTGTG+TGG - Chr4:89970392-89970411 MsG0480023800.01.T01:CDS 50.0%
TGGTTTGACGTTGGGTTTCG+CGG - Chr4:89970276-89970295 MsG0480023800.01.T01:CDS 50.0%
TTCCATTCCGAGAGAGAGAC+CGG + Chr4:89969260-89969279 None:intergenic 50.0%
! CCGTTTGTTTGGAATGGTGG+TGG - Chr4:89969788-89969807 MsG0480023800.01.T01:CDS 50.0%
! CTATATGGTGGGGATGCCAA+TGG - Chr4:89970236-89970255 MsG0480023800.01.T01:CDS 50.0%
! GGTTCTGGTGCAACCAAATG+AGG + Chr4:89969411-89969430 None:intergenic 50.0%
AACGCAAGCACAACCGCCAT+TGG + Chr4:89970255-89970274 None:intergenic 55.0%
AACGGAGTAGCCGGTGATGT+TGG + Chr4:89969233-89969252 None:intergenic 55.0%
ACGCGTGTTGGAAACGAGCT+GGG - Chr4:89969940-89969959 MsG0480023800.01.T01:CDS 55.0%
ATCGCCTTCGCCAACATCAC+CGG - Chr4:89969220-89969239 MsG0480023800.01.T01:CDS 55.0%
CCAACGAAACCTCATCCCTG+TGG + Chr4:89970052-89970071 None:intergenic 55.0%
CCACAGGGATGAGGTTTCGT+TGG - Chr4:89970049-89970068 MsG0480023800.01.T01:CDS 55.0%
GAGAGAGAGACCGGAGAGAA+CGG + Chr4:89969251-89969270 None:intergenic 55.0%
GGCCAGAAACCGTTGTTGAC+TGG - Chr4:89970450-89970469 MsG0480023800.01.T01:CDS 55.0%
GGTAACTGTCCTCAGACGGT+GGG - Chr4:89970150-89970169 MsG0480023800.01.T01:CDS 55.0%
GGTTTGACGTTGGGTTTCGC+GGG - Chr4:89970277-89970296 MsG0480023800.01.T01:CDS 55.0%
GTGGCGGCGAATGTGAATCT+TGG - Chr4:89970207-89970226 MsG0480023800.01.T01:CDS 55.0%
GTGTTGTCAGGGGAACAGCA+AGG - Chr4:89970178-89970197 MsG0480023800.01.T01:CDS 55.0%
GTTCTCTCCGGTCTCTCTCT+CGG - Chr4:89969250-89969269 MsG0480023800.01.T01:CDS 55.0%
TCGGAGTAAAGGCTTCCAGC+CGG + Chr4:89969746-89969765 None:intergenic 55.0%
TGGTAACTGTCCTCAGACGG+TGG - Chr4:89970149-89970168 MsG0480023800.01.T01:CDS 55.0%
TTAGCCGTTTCCACGCGTGT+TGG - Chr4:89969928-89969947 MsG0480023800.01.T01:CDS 55.0%
! CAGCGACGGTTTTTGCCACA+GGG - Chr4:89970034-89970053 MsG0480023800.01.T01:CDS 55.0%
! CGGTTTTTGCCACAGGGATG+AGG - Chr4:89970040-89970059 MsG0480023800.01.T01:CDS 55.0%
! GAATAGGTTGGAGGCTGCAG+AGG + Chr4:89969641-89969660 None:intergenic 55.0%
! GCTTTGGTTGGGCTTGCTCT+CGG - Chr4:89970299-89970318 MsG0480023800.01.T01:CDS 55.0%
! TATGGTGGGGATGCCAATGG+CGG - Chr4:89970239-89970258 MsG0480023800.01.T01:CDS 55.0%
! TCAGCGACGGTTTTTGCCAC+AGG - Chr4:89970033-89970052 MsG0480023800.01.T01:CDS 55.0%
! TGGCGGTTGTGCTTGCGTTT+TGG - Chr4:89970256-89970275 MsG0480023800.01.T01:CDS 55.0%
AACAGCAAGGCCAGGTGTGG+CGG - Chr4:89970191-89970210 MsG0480023800.01.T01:CDS 60.0%
AACGGAAACGCAGCTTGGCG+TGG + Chr4:89969773-89969792 None:intergenic 60.0%
ACCGGAGAGAACGGAGTAGC+CGG + Chr4:89969242-89969261 None:intergenic 60.0%
ACCGGCTACTCCGTTCTCTC+CGG - Chr4:89969238-89969257 MsG0480023800.01.T01:CDS 60.0%
ACGTTGGGTTTCGCGGGCTT+TGG - Chr4:89970283-89970302 MsG0480023800.01.T01:CDS 60.0%
CACGCGTGTTGGAAACGAGC+TGG - Chr4:89969939-89969958 MsG0480023800.01.T01:CDS 60.0%
CAGCTCGTTTCCAACACGCG+TGG + Chr4:89969941-89969960 None:intergenic 60.0%
CTCCGGTCTCTCTCTCGGAA+TGG - Chr4:89969255-89969274 MsG0480023800.01.T01:CDS 60.0%
CTGGCATACACTGCGCCACA+TGG - Chr4:89969695-89969714 MsG0480023800.01.T01:CDS 60.0%
GAAGGCGATGGCGAGTGAAC+CGG + Chr4:89969209-89969228 None:intergenic 60.0%
GGCGTGGCAAGTCGGAGTAA+AGG + Chr4:89969757-89969776 None:intergenic 60.0%
GGTGATGTTGGCGAAGGCGA+TGG + Chr4:89969221-89969240 None:intergenic 60.0%
GTAGCCGGTGATGTTGGCGA+AGG + Chr4:89969227-89969246 None:intergenic 60.0%
TCTACTCGGCGCTGTCCATG+TGG + Chr4:89969713-89969732 None:intergenic 60.0%
TTCACATTCGCCGCCACACC+TGG + Chr4:89970204-89970223 None:intergenic 60.0%
! GGGTTTCGCGGGCTTTGGTT+GGG - Chr4:89970288-89970307 MsG0480023800.01.T01:CDS 60.0%
! TGGGTTTCGCGGGCTTTGGT+TGG - Chr4:89970287-89970306 MsG0480023800.01.T01:CDS 60.0%
!! CGGCCCAGGTTTGTTGTGCT+GGG - Chr4:89970319-89970338 MsG0480023800.01.T01:CDS 60.0%
!! GAGGAGAGTGCCAGCAAGTG+AGG + Chr4:89969560-89969579 None:intergenic 60.0%
!! GGTGGGTTGCGGTGTTGTCA+GGG - Chr4:89970167-89970186 MsG0480023800.01.T01:CDS 60.0%
!! GTGGGTTGCGGTGTTGTCAG+GGG - Chr4:89970168-89970187 MsG0480023800.01.T01:CDS 60.0%
!! TCGGCCCAGGTTTGTTGTGC+TGG - Chr4:89970318-89970337 MsG0480023800.01.T01:CDS 60.0%
!! TGTCCTCAGACGGTGGGTTG+CGG - Chr4:89970156-89970175 MsG0480023800.01.T01:CDS 60.0%
ACACCGCAACCCACCGTCTG+AGG + Chr4:89970162-89970181 None:intergenic 65.0%
CGCAGCTTGGCGTGGCAAGT+CGG + Chr4:89969765-89969784 None:intergenic 65.0%
GGGAACAGCAAGGCCAGGTG+TGG - Chr4:89970188-89970207 MsG0480023800.01.T01:CDS 65.0%
GTCAGGGGAACAGCAAGGCC+AGG - Chr4:89970183-89970202 MsG0480023800.01.T01:CDS 65.0%
TGCAGAGGCAGCTGGGACTC+CGG + Chr4:89969626-89969645 None:intergenic 65.0%
TGGAGGCTGCAGAGGCAGCT+GGG + Chr4:89969633-89969652 None:intergenic 65.0%
TTGGAGGCTGCAGAGGCAGC+TGG + Chr4:89969634-89969653 None:intergenic 65.0%
!! CGGTGGGTTGCGGTGTTGTC+AGG - Chr4:89970166-89970185 MsG0480023800.01.T01:CDS 65.0%
! GTTGGGCTTGCTCTCGGCCC+AGG - Chr4:89970305-89970324 MsG0480023800.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 89969082 89970491 89969082 ID=MsG0480023800.01;Name=MsG0480023800.01
Chr4 mRNA 89969082 89970491 89969082 ID=MsG0480023800.01.T01;Parent=MsG0480023800.01;Name=MsG0480023800.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|469
Chr4 exon 89969082 89970491 89969082 ID=MsG0480023800.01.T01:exon:25496;Parent=MsG0480023800.01.T01
Chr4 CDS 89969082 89970491 89969082 ID=MsG0480023800.01.T01:cds;Parent=MsG0480023800.01.T01
Gene Sequence

>MsG0480023800.01.T01

ATGGAAGAAATGAAATCCCTAATGATGCTTGCTTTTCCAATAGCCATAACAGCTCTTATTTTCTATTCTCGTTCCATGGTGTCCATGATGTTCCTAGGCTATCTAGGAGAACTTGAACTTGCAGCCGGTTCACTCGCCATCGCCTTCGCCAACATCACCGGCTACTCCGTTCTCTCCGGTCTCTCTCTCGGAATGGAACCTCTCTGTTCACAAGCCTTTGGAGCAAACCGTCCTAAACTCCTATCCTTAACCCTTCAACGTTGCATCCTCTTCCTGTTACTATGTTCCATTCCCATTTCCTTCATGTGGCTTAACATGTCACAAATCCTCATTTGGTTGCACCAGAACCCAAAGATCACAACCATGGCTCACACATATCTAATCTTCTCTCTCCCTGATCTCATCACAAATTCATTCATCCACCCTATACGTATTTACCTTCGTGCACAAGGAATCACTCACCCAATTACATTAGCCTCACTTGCTGGCACTCTCCTCCATCTTCCACTAAATTACTTCTTTGTCTTTCACTTCGGTTTCACCGGAGTCCCAGCTGCCTCTGCAGCCTCCAACCTATTCATTGTGTTGTTCCTCATCGCGTATGTTTGGTTAACTGGCATACACTGCGCCACATGGACAGCGCCGAGTAGAGAAATTCTCTCCGGCTGGAAGCCTTTACTCCGACTTGCCACGCCAAGCTGCGTTTCCGTTTGTTTGGAATGGTGGTGGTATGAAGTAATGATCATTTTATGTGGTTTACTTGTGGACCCCACCGTAACCGTTGCTTCTATGGGGATTTTAATTCAAACTACTGCATTCATTTATGTCTTTCCATCTTCACTTGGATTAGCCGTTTCCACGCGTGTTGGAAACGAGCTGGGTGCTAACCGTCCTTTCCAAGCTAAGTTATCATCCCTGGTAGCAATATTCGTCGCTGTAATGATAGGTTTTTCAGCGACGGTTTTTGCCACAGGGATGAGGTTTCGTTGGGGAAGAATGTTTACTGCTGATGAAAATATTCTTCGGCTGACTTCTTTGGCACTTCCAATCCTTGGATTGTGTGAACTTGGTAACTGTCCTCAGACGGTGGGTTGCGGTGTTGTCAGGGGAACAGCAAGGCCAGGTGTGGCGGCGAATGTGAATCTTGGTGCTTTCTATATGGTGGGGATGCCAATGGCGGTTGTGCTTGCGTTTTGGTTTGACGTTGGGTTTCGCGGGCTTTGGTTGGGCTTGCTCTCGGCCCAGGTTTGTTGTGCTGGGTTCATGTTGTATGTGATTGCGATCACTGATTGGGATTTTGAAGCTATGCGTGCCCACTTGCTTACTTGTGTGGAGAATGGAATGGGTAGTGATGATGGGATGATAAACGGCCAGAAACCGTTGTTGACTGGTATTGTTGTTGAGGCTTGA
Protein sequence

>MsG0480023800.01.T01

MEEMKSLMMLAFPIAITALIFYSRSMVSMMFLGYLGELELAAGSLAIAFANITGYSVLSGLSLGMEPLCSQAFGANRPKLLSLTLQRCILFLLLCSIPISFMWLNMSQILIWLHQNPKITTMAHTYLIFSLPDLITNSFIHPIRIYLRAQGITHPITLASLAGTLLHLPLNYFFVFHFGFTGVPAASAASNLFIVLFLIAYVWLTGIHCATWTAPSREILSGWKPLLRLATPSCVSVCLEWWWYEVMIILCGLLVDPTVTVASMGILIQTTAFIYVFPSSLGLAVSTRVGNELGANRPFQAKLSSLVAIFVAVMIGFSATVFATGMRFRWGRMFTADENILRLTSLALPILGLCELGNCPQTVGCGVVRGTARPGVAANVNLGAFYMVGMPMAVVLAFWFDVGFRGLWLGLLSAQVCCAGFMLYVIAITDWDFEAMRAHLLTCVENGMGSDDGMINGQKPLLTGIVVEA*