Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024936.01.T01 | XP_003611946.1 | 90.09 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 3.48E-130 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024936.01.T01 | O23208 | 53.774 | 212 | 90 | 7 | 7 | 215 | 10 | 216 | 1.33E-61 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024936.01.T01 | G7KC72 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 1.66e-130 | 375 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580024936.01.T01 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048842.01 | MsG0580024936.01 | -0.800859 | 1.182718e-48 | 5.566394e-46 |
| MsG0180004761.01 | MsG0580024936.01 | -0.802628 | 5.126861e-49 | 2.523548e-46 |
| MsG0480019038.01 | MsG0580024936.01 | 0.808262 | 3.376352e-50 | 1.921723e-47 |
| MsG0580024936.01 | MsG0580024938.01 | 0.814116 | 1.815177e-51 | 1.207347e-48 |
| MsG0580024936.01 | MsG0880041883.01 | 0.827010 | 1.980526e-54 | 1.888183e-51 |
| MsG0580024936.01 | MsG0880047531.01 | 0.802829 | 4.660043e-49 | 2.305767e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024936.01.T01 | MTR_5g019650 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 4.21e-134 | 375 |
| MsG0580024936.01.T01 | MTR_5g019680 | 82.160 | 213 | 32 | 2 | 1 | 213 | 1 | 207 | 1.21e-114 | 326 |
| MsG0580024936.01.T01 | MTR_4g107650 | 43.200 | 125 | 61 | 2 | 41 | 155 | 79 | 203 | 1.68e-23 | 96.3 |
| MsG0580024936.01.T01 | MTR_6g007647 | 48.214 | 112 | 47 | 3 | 54 | 157 | 33 | 141 | 4.17e-22 | 91.3 |
| MsG0580024936.01.T01 | MTR_6g007647 | 48.214 | 112 | 47 | 3 | 54 | 157 | 67 | 175 | 6.00e-22 | 91.3 |
| MsG0580024936.01.T01 | MTR_7g103340 | 35.465 | 172 | 93 | 3 | 48 | 205 | 57 | 224 | 1.30e-21 | 89.4 |
| MsG0580024936.01.T01 | MTR_3g086790 | 60.811 | 74 | 29 | 0 | 54 | 127 | 60 | 133 | 1.52e-21 | 90.5 |
| MsG0580024936.01.T01 | MTR_1g061660 | 39.161 | 143 | 81 | 1 | 54 | 190 | 59 | 201 | 1.61e-21 | 89.0 |
| MsG0580024936.01.T01 | MTR_8g089895 | 52.475 | 101 | 39 | 1 | 54 | 145 | 54 | 154 | 3.14e-21 | 89.7 |
| MsG0580024936.01.T01 | MTR_6g011610 | 50.495 | 101 | 50 | 0 | 43 | 143 | 85 | 185 | 1.02e-20 | 87.8 |
| MsG0580024936.01.T01 | MTR_6g011610 | 50.495 | 101 | 50 | 0 | 43 | 143 | 66 | 166 | 1.24e-20 | 87.4 |
| MsG0580024936.01.T01 | MTR_8g468210 | 42.609 | 115 | 61 | 1 | 46 | 160 | 69 | 178 | 4.02e-20 | 86.3 |
| MsG0580024936.01.T01 | MTR_8g469430 | 48.598 | 107 | 48 | 2 | 54 | 153 | 89 | 195 | 5.44e-20 | 85.9 |
| MsG0580024936.01.T01 | MTR_5g039000 | 43.478 | 115 | 60 | 1 | 46 | 160 | 69 | 178 | 9.34e-20 | 85.5 |
| MsG0580024936.01.T01 | MTR_5g038280 | 59.155 | 71 | 29 | 0 | 54 | 124 | 87 | 157 | 1.67e-19 | 85.1 |
| MsG0580024936.01.T01 | MTR_3g092150 | 39.716 | 141 | 68 | 3 | 56 | 196 | 40 | 163 | 6.02e-19 | 82.4 |
| MsG0580024936.01.T01 | MTR_3g080100 | 47.368 | 95 | 50 | 0 | 51 | 145 | 17 | 111 | 9.45e-18 | 78.6 |
| MsG0580024936.01.T01 | MTR_8g026960 | 44.860 | 107 | 56 | 1 | 58 | 164 | 38 | 141 | 1.30e-17 | 79.0 |
| MsG0580024936.01.T01 | MTR_3g080100 | 47.368 | 95 | 50 | 0 | 51 | 145 | 56 | 150 | 1.41e-17 | 79.0 |
| MsG0580024936.01.T01 | MTR_7g010020 | 47.778 | 90 | 47 | 0 | 54 | 143 | 80 | 169 | 1.95e-15 | 73.6 |
| MsG0580024936.01.T01 | MTR_2g061030 | 35.616 | 146 | 88 | 2 | 34 | 173 | 180 | 325 | 4.47e-14 | 70.1 |
| MsG0580024936.01.T01 | MTR_4g100550 | 42.727 | 110 | 57 | 2 | 39 | 143 | 106 | 214 | 5.08e-14 | 69.7 |
| MsG0580024936.01.T01 | MTR_8g006705 | 45.263 | 95 | 47 | 1 | 54 | 143 | 146 | 240 | 1.61e-13 | 68.6 |
| MsG0580024936.01.T01 | MTR_4g084750 | 53.731 | 67 | 31 | 0 | 54 | 120 | 65 | 131 | 2.91e-13 | 66.2 |
| MsG0580024936.01.T01 | MTR_4g097600 | 45.263 | 95 | 47 | 1 | 54 | 143 | 127 | 221 | 4.30e-13 | 67.0 |
| MsG0580024936.01.T01 | MTR_1g054285 | 38.053 | 113 | 65 | 1 | 34 | 141 | 134 | 246 | 3.42e-12 | 64.7 |
| MsG0580024936.01.T01 | MTR_5g014890 | 45.263 | 95 | 47 | 1 | 54 | 143 | 123 | 217 | 4.69e-12 | 63.9 |
| MsG0580024936.01.T01 | MTR_7g093430 | 37.500 | 112 | 65 | 1 | 35 | 141 | 141 | 252 | 6.77e-12 | 63.5 |
| MsG0580024936.01.T01 | MTR_5g013010 | 43.158 | 95 | 49 | 1 | 54 | 143 | 136 | 230 | 8.38e-12 | 63.5 |
| MsG0580024936.01.T01 | MTR_1g017090 | 45.349 | 86 | 47 | 0 | 54 | 139 | 130 | 215 | 1.17e-11 | 63.2 |
| MsG0580024936.01.T01 | MTR_3g103590 | 43.836 | 73 | 41 | 0 | 52 | 124 | 143 | 215 | 4.01e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024936.01.T01 | AT4G36740 | 53.302 | 212 | 92 | 6 | 7 | 215 | 10 | 217 | 5.15e-63 | 195 |
| MsG0580024936.01.T01 | AT4G36740 | 53.774 | 212 | 90 | 7 | 7 | 215 | 10 | 216 | 1.36e-62 | 194 |
| MsG0580024936.01.T01 | AT2G18550 | 47.788 | 226 | 101 | 8 | 1 | 215 | 1 | 220 | 1.89e-62 | 194 |
| MsG0580024936.01.T01 | AT5G66700 | 45.333 | 225 | 104 | 7 | 5 | 215 | 9 | 228 | 1.37e-44 | 149 |
| MsG0580024936.01.T01 | AT3G01470 | 49.505 | 101 | 44 | 1 | 50 | 143 | 64 | 164 | 1.13e-23 | 95.9 |
| MsG0580024936.01.T01 | AT1G69780 | 38.816 | 152 | 83 | 3 | 2 | 143 | 23 | 174 | 1.22e-22 | 93.2 |
| MsG0580024936.01.T01 | AT4G40060 | 57.317 | 82 | 35 | 0 | 43 | 124 | 48 | 129 | 9.51e-22 | 90.9 |
| MsG0580024936.01.T01 | AT2G22430 | 64.789 | 71 | 25 | 0 | 54 | 124 | 62 | 132 | 1.68e-21 | 90.5 |
| MsG0580024936.01.T01 | AT1G26960 | 44.355 | 124 | 64 | 1 | 54 | 177 | 71 | 189 | 1.88e-21 | 89.4 |
| MsG0580024936.01.T01 | AT5G03790 | 50.000 | 94 | 46 | 1 | 46 | 139 | 70 | 162 | 7.30e-21 | 87.4 |
| MsG0580024936.01.T01 | AT5G65310 | 65.152 | 66 | 23 | 0 | 54 | 119 | 54 | 119 | 1.29e-20 | 87.8 |
| MsG0580024936.01.T01 | AT5G65310 | 58.108 | 74 | 31 | 0 | 46 | 119 | 64 | 137 | 1.36e-20 | 88.2 |
| MsG0580024936.01.T01 | AT5G03790 | 48.936 | 94 | 47 | 1 | 46 | 139 | 70 | 162 | 1.93e-20 | 85.5 |
| MsG0580024936.01.T01 | AT2G46680 | 41.732 | 127 | 67 | 1 | 48 | 174 | 26 | 145 | 2.96e-20 | 86.3 |
| MsG0580024936.01.T01 | AT2G46680 | 47.748 | 111 | 51 | 1 | 48 | 151 | 26 | 136 | 1.14e-19 | 84.7 |
| MsG0580024936.01.T01 | AT2G36610 | 46.296 | 108 | 50 | 2 | 46 | 145 | 63 | 170 | 1.72e-19 | 82.8 |
| MsG0580024936.01.T01 | AT3G01220 | 50.000 | 86 | 43 | 0 | 39 | 124 | 72 | 157 | 1.09e-18 | 82.4 |
| MsG0580024936.01.T01 | AT5G53980 | 44.444 | 99 | 55 | 0 | 45 | 143 | 2 | 100 | 1.64e-18 | 79.3 |
| MsG0580024936.01.T01 | AT5G15150 | 53.750 | 80 | 37 | 0 | 41 | 120 | 102 | 181 | 2.04e-18 | 82.0 |
| MsG0580024936.01.T01 | AT3G61890 | 41.176 | 119 | 64 | 1 | 57 | 169 | 33 | 151 | 1.07e-17 | 79.0 |
| MsG0580024936.01.T01 | AT1G27045 | 42.735 | 117 | 54 | 2 | 52 | 155 | 66 | 182 | 6.05e-17 | 76.6 |
| MsG0580024936.01.T01 | AT1G27045 | 36.054 | 147 | 79 | 2 | 52 | 191 | 15 | 153 | 6.89e-17 | 75.5 |
| MsG0580024936.01.T01 | AT1G27045 | 36.054 | 147 | 79 | 2 | 52 | 191 | 23 | 161 | 8.04e-17 | 75.5 |
| MsG0580024936.01.T01 | AT1G27045 | 36.054 | 147 | 79 | 2 | 52 | 191 | 23 | 161 | 8.04e-17 | 75.5 |
| MsG0580024936.01.T01 | AT1G27045 | 57.353 | 68 | 29 | 0 | 52 | 119 | 66 | 133 | 1.87e-16 | 75.9 |
| MsG0580024936.01.T01 | AT2G22800 | 45.161 | 93 | 46 | 1 | 54 | 141 | 113 | 205 | 1.94e-13 | 67.8 |
| MsG0580024936.01.T01 | AT4G16780 | 40.741 | 108 | 54 | 2 | 41 | 143 | 121 | 223 | 6.79e-13 | 66.6 |
| MsG0580024936.01.T01 | AT4G37790 | 44.086 | 93 | 47 | 1 | 54 | 141 | 126 | 218 | 1.78e-12 | 65.1 |
| MsG0580024936.01.T01 | AT4G17460 | 40.385 | 104 | 57 | 1 | 45 | 143 | 126 | 229 | 3.48e-12 | 64.3 |
| MsG0580024936.01.T01 | AT2G01430 | 37.008 | 127 | 65 | 2 | 54 | 179 | 139 | 251 | 3.93e-12 | 64.3 |
| MsG0580024936.01.T01 | AT5G47370 | 37.931 | 116 | 67 | 1 | 33 | 143 | 109 | 224 | 1.08e-11 | 63.2 |
| MsG0580024936.01.T01 | AT5G06710 | 39.048 | 105 | 64 | 0 | 35 | 139 | 171 | 275 | 1.90e-11 | 62.8 |
| MsG0580024936.01.T01 | AT3G60390 | 40.000 | 105 | 58 | 1 | 44 | 143 | 152 | 256 | 2.61e-11 | 62.4 |
Find 43 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTGAGGAATTATT+TGG | 0.121044 | 5:-11886806 | None:intergenic |
| TCCACCTAGCTCTTCGATTC+TGG | 0.214518 | 5:-11887131 | None:intergenic |
| TGATGAACAGATGAAAATTT+TGG | 0.274813 | 5:+11887011 | MsG0580024936.01.T01:CDS |
| TAAGCATCATTTGGTCTTGA+TGG | 0.320716 | 5:-11886752 | None:intergenic |
| GAACCATACTGCAACTTGTC+TGG | 0.324204 | 5:-11887109 | None:intergenic |
| CTACGCTTGCGTCTTGGCTT+TGG | 0.328958 | 5:-11886925 | None:intergenic |
| TTGTAGTAACATGTTTCATT+AGG | 0.345702 | 5:-11888277 | None:intergenic |
| CTGCATGTTACCCTTTCAAT+TGG | 0.385057 | 5:-11888148 | None:intergenic |
| ATCCCAGACAAGTTGCAGTA+TGG | 0.391231 | 5:+11887106 | MsG0580024936.01.T01:CDS |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5:-11886931 | None:intergenic |
| ACCTTGTTGAGGAATTATTT+GGG | 0.434434 | 5:-11886805 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.439510 | 5:-11887227 | None:intergenic |
| ACTGAGACATAAGCATCATT+TGG | 0.463969 | 5:-11886761 | None:intergenic |
| CGTAGTAAGAAGAACAAAAG+TGG | 0.482800 | 5:+11886943 | MsG0580024936.01.T01:CDS |
| GATAGGCTTGCAATGGAGCT+TGG | 0.487004 | 5:+11887078 | MsG0580024936.01.T01:CDS |
| AAGGAGATACTTCTCAAGAA+TGG | 0.497377 | 5:-11887208 | None:intergenic |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5:+11887056 | MsG0580024936.01.T01:CDS |
| GTCTCAGTCAGTGGAAGTTG+TGG | 0.499926 | 5:+11888192 | MsG0580024936.01.T01:CDS |
| GGTGAATTTGGTGTTGATAA+CGG | 0.514478 | 5:+11888229 | MsG0580024936.01.T01:CDS |
| ACACCAAATTCACCAAGAAA+AGG | 0.517876 | 5:-11888220 | None:intergenic |
| AACCATACTGCAACTTGTCT+GGG | 0.517968 | 5:-11887108 | None:intergenic |
| TTGAGTCAGAGAAGAAGGAT+AGG | 0.537241 | 5:+11887061 | MsG0580024936.01.T01:CDS |
| ATTTGGGTGTATTCACAAGC+GGG | 0.547719 | 5:-11886789 | None:intergenic |
| GCTTCGAGAGCCAATTGAAA+GGG | 0.560533 | 5:+11888138 | MsG0580024936.01.T01:CDS |
| CCAAATTCACCAAGAAAAGG+TGG | 0.566129 | 5:-11888217 | None:intergenic |
| GTTACTACAATGGCATGGAA+TGG | 0.566673 | 5:+11888290 | MsG0580024936.01.T01:CDS |
| GGCTTCGAGAGCCAATTGAA+AGG | 0.569118 | 5:+11888137 | MsG0580024936.01.T01:CDS |
| AATCTGAGAAAGAAAATCAA+AGG | 0.580369 | 5:+11888116 | MsG0580024936.01.T01:CDS |
| AACTTCCACTGACTGAGACA+TGG | 0.581765 | 5:-11888188 | None:intergenic |
| TTCATCCATGTCTCAGTCAG+TGG | 0.582296 | 5:+11888183 | MsG0580024936.01.T01:CDS |
| GAAGAAGGATAGGCTTGCAA+TGG | 0.584642 | 5:+11887071 | MsG0580024936.01.T01:CDS |
| AATGAAACATGTTACTACAA+TGG | 0.596613 | 5:+11888280 | MsG0580024936.01.T01:CDS |
| TGTATAGGTGTTGAAGCTAA+CGG | 0.597602 | 5:+11888081 | MsG0580024936.01.T01:intron |
| GGTTCCAGAATCGAAGAGCT+AGG | 0.598892 | 5:+11887127 | MsG0580024936.01.T01:CDS |
| TATTTGGGTGTATTCACAAG+CGG | 0.604533 | 5:-11886790 | None:intergenic |
| ACTTGATACTAACCTTGTTG+AGG | 0.606044 | 5:-11886816 | None:intergenic |
| GAGATACTTCTCAAGAATGG+TGG | 0.612212 | 5:-11887205 | None:intergenic |
| AACATGTTACTACAATGGCA+TGG | 0.616964 | 5:+11888285 | MsG0580024936.01.T01:CDS |
| GAAGTATCTCCTTGAAACCA+AGG | 0.625666 | 5:+11887218 | MsG0580024936.01.T01:CDS |
| CAAATTCACCAAGAAAAGGT+GGG | 0.668413 | 5:-11888216 | None:intergenic |
| TTTGGGTGTATTCACAAGCG+GGG | 0.669434 | 5:-11886788 | None:intergenic |
| ACCCAAATAATTCCTCAACA+AGG | 0.682907 | 5:+11886804 | MsG0580024936.01.T01:CDS |
| TCCAGAATCGAAGAGCTAGG+TGG | 0.707809 | 5:+11887130 | MsG0580024936.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACAAAGTAATTAAATAA+AGG | - | Chr5:11887598-11887617 | None:intergenic | 10.0% |
| !! | TTCAAAAAATATAATATTGT+TGG | - | Chr5:11887408-11887427 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | Chr5:11887333-11887352 | MsG0580024936.01.T01:intron | 10.0% |
| !! | AAAAAAAAATGCATAAAAAG+AGG | - | Chr5:11887258-11887277 | None:intergenic | 15.0% |
| !! | CTATAGTAATATAATATTGT+TGG | - | Chr5:11887436-11887455 | None:intergenic | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | + | Chr5:11887956-11887975 | MsG0580024936.01.T01:intron | 15.0% |
| !!! | ACTTTATCATTTTTCATTAA+GGG | - | Chr5:11887719-11887738 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTATGTTTTTTT+AGG | + | Chr5:11886892-11886911 | MsG0580024936.01.T01:intron | 15.0% |
| !!! | TACTTTATCATTTTTCATTA+AGG | - | Chr5:11887720-11887739 | None:intergenic | 15.0% |
| !!! | TTTTTTGGTATGTTTTTTTA+GGG | + | Chr5:11886893-11886912 | MsG0580024936.01.T01:intron | 15.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | Chr5:11887338-11887357 | MsG0580024936.01.T01:intron | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | + | Chr5:11887024-11887043 | MsG0580024936.01.T01:CDS | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | + | Chr5:11887959-11887978 | MsG0580024936.01.T01:intron | 20.0% |
| !!! | CTTTATCATTTTTCATTAAG+GGG | - | Chr5:11887718-11887737 | None:intergenic | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | Chr5:11886894-11886913 | MsG0580024936.01.T01:intron | 20.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | + | Chr5:11888116-11888135 | MsG0580024936.01.T01:CDS | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | Chr5:11888280-11888299 | MsG0580024936.01.T01:CDS | 25.0% |
| ! | ACACCTATACAAACAATTAA+TGG | - | Chr5:11888072-11888091 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | Chr5:11886980-11886999 | MsG0580024936.01.T01:CDS | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+AGG | - | Chr5:11887646-11887665 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | - | Chr5:11887961-11887980 | None:intergenic | 25.0% |
| ! | GTTCCATTAATTGTTTGTAT+AGG | + | Chr5:11888066-11888085 | MsG0580024936.01.T01:intron | 25.0% |
| ! | TTCTCTCTTTCAACATTTAA+GGG | - | Chr5:11887645-11887664 | None:intergenic | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | Chr5:11888280-11888299 | None:intergenic | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | Chr5:11886984-11887003 | None:intergenic | 25.0% |
| !! | TGATGAACAGATGAAAATTT+TGG | + | Chr5:11887011-11887030 | MsG0580024936.01.T01:CDS | 25.0% |
| AACACTAGTAACGTCAATTT+AGG | + | Chr5:11887483-11887502 | MsG0580024936.01.T01:intron | 30.0% | |
| AACCTTGTTGAGGAATTATT+TGG | - | Chr5:11886809-11886828 | None:intergenic | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | Chr5:11887484-11887503 | MsG0580024936.01.T01:intron | 30.0% | |
| ACCTTGTTGAGGAATTATTT+GGG | - | Chr5:11886808-11886827 | None:intergenic | 30.0% | |
| TAGATAAATAGCAATGCTCA+TGG | - | Chr5:11887899-11887918 | None:intergenic | 30.0% | |
| ! | TGAACAGATGAAAATTTTGG+AGG | + | Chr5:11887014-11887033 | MsG0580024936.01.T01:CDS | 30.0% |
| ! | TGGAAATATGGTCACATTTT+TGG | - | Chr5:11887879-11887898 | None:intergenic | 30.0% |
| !! | TGAGAACTTGATAATGTGAA+CGG | - | Chr5:11887758-11887777 | None:intergenic | 30.0% |
| AACATGTTACTACAATGGCA+TGG | + | Chr5:11888285-11888304 | MsG0580024936.01.T01:CDS | 35.0% | |
| AAGGAGATACTTCTCAAGAA+TGG | - | Chr5:11887211-11887230 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | - | Chr5:11888223-11888242 | None:intergenic | 35.0% | |
| ACACGATGTTTCATTTCATG+TGG | + | Chr5:11887788-11887807 | MsG0580024936.01.T01:intron | 35.0% | |
| ACATGAAATGAAACATCGTG+TGG | - | Chr5:11887789-11887808 | None:intergenic | 35.0% | |
| ACCCAAATAATTCCTCAACA+AGG | + | Chr5:11886804-11886823 | MsG0580024936.01.T01:CDS | 35.0% | |
| ACTGAGACATAAGCATCATT+TGG | - | Chr5:11886764-11886783 | None:intergenic | 35.0% | |
| ACTTGATACTAACCTTGTTG+AGG | - | Chr5:11886819-11886838 | None:intergenic | 35.0% | |
| CAAATTCACCAAGAAAAGGT+GGG | - | Chr5:11888219-11888238 | None:intergenic | 35.0% | |
| CGTAGTAAGAAGAACAAAAG+TGG | + | Chr5:11886943-11886962 | MsG0580024936.01.T01:CDS | 35.0% | |
| GCATAAAAAGAGGAAGAAAG+AGG | - | Chr5:11887248-11887267 | None:intergenic | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | Chr5:11887056-11887075 | MsG0580024936.01.T01:CDS | 35.0% | |
| TAGCAATGCTCATGGAAATA+TGG | - | Chr5:11887891-11887910 | None:intergenic | 35.0% | |
| TATTTGGGTGTATTCACAAG+CGG | - | Chr5:11886793-11886812 | None:intergenic | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | Chr5:11887652-11887671 | MsG0580024936.01.T01:intron | 35.0% | |
| ! | TGTTATTTGGCGGAAATCAA+GGG | + | Chr5:11887969-11887988 | MsG0580024936.01.T01:intron | 35.0% |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | Chr5:11888229-11888248 | MsG0580024936.01.T01:CDS | 35.0% |
| !! | TAAGCATCATTTGGTCTTGA+TGG | - | Chr5:11886755-11886774 | None:intergenic | 35.0% |
| !! | TGTATAGGTGTTGAAGCTAA+CGG | + | Chr5:11888081-11888100 | MsG0580024936.01.T01:intron | 35.0% |
| !! | TTGTTATTTGGCGGAAATCA+AGG | + | Chr5:11887968-11887987 | MsG0580024936.01.T01:intron | 35.0% |
| AACCATACTGCAACTTGTCT+GGG | - | Chr5:11887111-11887130 | None:intergenic | 40.0% | |
| ATGCTACCATGTTTCTTCTC+TGG | + | Chr5:11887512-11887531 | MsG0580024936.01.T01:intron | 40.0% | |
| ATTTGGGTGTATTCACAAGC+GGG | - | Chr5:11886792-11886811 | None:intergenic | 40.0% | |
| CCAAATTCACCAAGAAAAGG+TGG | - | Chr5:11888220-11888239 | None:intergenic | 40.0% | |
| CTGCATGTTACCCTTTCAAT+TGG | - | Chr5:11888151-11888170 | None:intergenic | 40.0% | |
| GAGATACTTCTCAAGAATGG+TGG | - | Chr5:11887208-11887227 | None:intergenic | 40.0% | |
| GTTACTACAATGGCATGGAA+TGG | + | Chr5:11888290-11888309 | MsG0580024936.01.T01:CDS | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | Chr5:11887061-11887080 | MsG0580024936.01.T01:CDS | 40.0% | |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | Chr5:11887230-11887249 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | Chr5:11887238-11887257 | None:intergenic | 40.0% |
| ! | CCACCTTTTCTTGGTGAATT+TGG | + | Chr5:11888217-11888236 | MsG0580024936.01.T01:CDS | 40.0% |
| ! | GAAGTATCTCCTTGAAACCA+AGG | + | Chr5:11887218-11887237 | MsG0580024936.01.T01:CDS | 40.0% |
| !! | ACTTGATAATGTGAACGGCT+TGG | - | Chr5:11887753-11887772 | None:intergenic | 40.0% |
| AGACCACCAGAGAAGAAACA+TGG | - | Chr5:11887521-11887540 | None:intergenic | 45.0% | |
| ATCCCAGACAAGTTGCAGTA+TGG | + | Chr5:11887106-11887125 | MsG0580024936.01.T01:CDS | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | + | Chr5:11887515-11887534 | MsG0580024936.01.T01:intron | 45.0% | |
| GAACCATACTGCAACTTGTC+TGG | - | Chr5:11887112-11887131 | None:intergenic | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | Chr5:11887071-11887090 | MsG0580024936.01.T01:CDS | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | Chr5:11888138-11888157 | MsG0580024936.01.T01:CDS | 45.0% | |
| TATTTGGCGGAAATCAAGGG+AGG | + | Chr5:11887972-11887991 | MsG0580024936.01.T01:intron | 45.0% | |
| TGTTTCTTCTCTGGTGGTCT+TGG | + | Chr5:11887521-11887540 | MsG0580024936.01.T01:intron | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | + | Chr5:11888183-11888202 | MsG0580024936.01.T01:CDS | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | Chr5:11886934-11886953 | None:intergenic | 45.0% | |
| TTTGGGTGTATTCACAAGCG+GGG | - | Chr5:11886791-11886810 | None:intergenic | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | Chr5:11888191-11888210 | None:intergenic | 45.0% |
| !! | GAATAAGCACTGGCATGCAA+CGG | + | Chr5:11887662-11887681 | MsG0580024936.01.T01:intron | 45.0% |
| !!! | TAGTTAATTATAATATTTTT+TGG | + | Chr5:11886878-11886897 | MsG0580024936.01.T01:intron | 5.0% |
| GATAGGCTTGCAATGGAGCT+TGG | + | Chr5:11887078-11887097 | MsG0580024936.01.T01:CDS | 50.0% | |
| GCGGAAATCAAGGGAGGTAA+TGG | + | Chr5:11887978-11887997 | MsG0580024936.01.T01:intron | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | Chr5:11888137-11888156 | MsG0580024936.01.T01:CDS | 50.0% | |
| GGTTCCAGAATCGAAGAGCT+AGG | + | Chr5:11887127-11887146 | MsG0580024936.01.T01:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | Chr5:11888192-11888211 | MsG0580024936.01.T01:CDS | 50.0% | |
| TCCAGAATCGAAGAGCTAGG+TGG | + | Chr5:11887130-11887149 | MsG0580024936.01.T01:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | + | Chr5:11888208-11888227 | MsG0580024936.01.T01:CDS | 50.0% |
| ! | TCCACCTAGCTCTTCGATTC+TGG | - | Chr5:11887134-11887153 | None:intergenic | 50.0% |
| CTACGCTTGCGTCTTGGCTT+TGG | - | Chr5:11886928-11886947 | None:intergenic | 55.0% | |
| CTGGCATGCAACGGTTCTTC+AGG | + | Chr5:11887671-11887690 | MsG0580024936.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 11886747 | 11888330 | 11886747 | ID=MsG0580024936.01;Name=MsG0580024936.01 |
| Chr5 | mRNA | 11886747 | 11888330 | 11886747 | ID=MsG0580024936.01.T01;Parent=MsG0580024936.01;Name=MsG0580024936.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|3|0|215 |
| Chr5 | exon | 11886747 | 11886825 | 11886747 | ID=MsG0580024936.01.T01:exon:542;Parent=MsG0580024936.01.T01 |
| Chr5 | exon | 11886914 | 11887239 | 11886914 | ID=MsG0580024936.01.T01:exon:543;Parent=MsG0580024936.01.T01 |
| Chr5 | exon | 11888088 | 11888330 | 11888088 | ID=MsG0580024936.01.T01:exon:544;Parent=MsG0580024936.01.T01 |
| Chr5 | CDS | 11886747 | 11886825 | 11886747 | ID=MsG0580024936.01.T01:cds;Parent=MsG0580024936.01.T01 |
| Chr5 | CDS | 11886914 | 11887239 | 11886914 | ID=MsG0580024936.01.T01:cds;Parent=MsG0580024936.01.T01 |
| Chr5 | CDS | 11888088 | 11888330 | 11888088 | ID=MsG0580024936.01.T01:cds;Parent=MsG0580024936.01.T01 |
| Gene Sequence |
| Protein sequence |
