Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024938.01.T01 | XP_003611950.1 | 93.529 | 170 | 10 | 1 | 1 | 170 | 1 | 169 | 7.10E-100 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024938.01.T01 | Q9ZU70 | 53.333 | 180 | 70 | 6 | 1 | 169 | 1 | 177 | 4.12E-55 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024938.01.T01 | G7KC76 | 93.529 | 170 | 10 | 1 | 1 | 170 | 1 | 169 | 3.39e-100 | 296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049059.01 | MsG0580024938.01 | 0.800913 | 1.153264e-48 | 5.435211e-46 |
| MsG0180002491.01 | MsG0580024938.01 | 0.817235 | 3.663498e-52 | 2.653097e-49 |
| MsG0180003864.01 | MsG0580024938.01 | 0.803565 | 3.281337e-49 | 1.654422e-46 |
| MsG0180004079.01 | MsG0580024938.01 | 0.844070 | 9.489215e-59 | 1.514475e-55 |
| MsG0180004770.01 | MsG0580024938.01 | 0.809440 | 1.890255e-50 | 1.109891e-47 |
| MsG0180006069.01 | MsG0580024938.01 | 0.838987 | 2.073701e-57 | 2.824466e-54 |
| MsG0280010554.01 | MsG0580024938.01 | 0.802290 | 6.018761e-49 | 2.937267e-46 |
| MsG0480020065.01 | MsG0580024938.01 | 0.828587 | 8.275234e-55 | 8.260743e-52 |
| MsG0480020090.01 | MsG0580024938.01 | 0.850411 | 1.727719e-60 | 3.381521e-57 |
| MsG0480021034.01 | MsG0580024938.01 | 0.824986 | 5.994780e-54 | 5.394608e-51 |
| MsG0480021464.01 | MsG0580024938.01 | 0.809157 | 2.173595e-50 | 1.266694e-47 |
| MsG0480023088.01 | MsG0580024938.01 | 0.841316 | 5.116852e-58 | 7.489202e-55 |
| MsG0580024353.01 | MsG0580024938.01 | 0.805479 | 1.308820e-49 | 6.931587e-47 |
| MsG0580024936.01 | MsG0580024938.01 | 0.814116 | 1.815177e-51 | 1.207347e-48 |
| MsG0580024938.01 | MsG0580025134.01 | 0.826300 | 2.926764e-54 | 2.733939e-51 |
| MsG0580024938.01 | MsG0580025327.01 | 0.804073 | 2.573033e-49 | 1.314341e-46 |
| MsG0580024938.01 | MsG0580026047.01 | 0.817190 | 3.749538e-52 | 2.712061e-49 |
| MsG0580024938.01 | MsG0580027345.01 | 0.812703 | 3.710003e-51 | 2.375421e-48 |
| MsG0580024938.01 | MsG0580028509.01 | 0.817983 | 2.485186e-52 | 1.836973e-49 |
| MsG0580024938.01 | MsG0680031055.01 | 0.807442 | 5.044877e-50 | 2.810195e-47 |
| MsG0580024938.01 | MsG0680035777.01 | 0.851184 | 1.046869e-60 | 2.101670e-57 |
| MsG0580024938.01 | MsG0780037895.01 | 0.815966 | 7.049282e-52 | 4.931000e-49 |
| MsG0580024938.01 | MsG0780039354.01 | -0.819389 | 1.191531e-52 | 9.156174e-50 |
| MsG0580024938.01 | MsG0780040442.01 | 0.827574 | 1.451276e-54 | 1.406474e-51 |
| MsG0580024938.01 | MsG0780041357.01 | 0.825704 | 4.054053e-54 | 3.723455e-51 |
| MsG0580024938.01 | MsG0880041883.01 | 0.821295 | 4.356338e-53 | 3.530002e-50 |
| MsG0580024938.01 | MsG0880041985.01 | 0.805152 | 1.532445e-49 | 8.048117e-47 |
| MsG0580024938.01 | MsG0880043465.01 | 0.805527 | 1.278844e-49 | 6.781018e-47 |
| MsG0580024938.01 | MsG0880045118.01 | 0.825026 | 5.864720e-54 | 5.283801e-51 |
| MsG0580024938.01 | MsG0880045290.01 | 0.825078 | 5.701590e-54 | 5.144274e-51 |
| MsG0580024938.01 | MsG0880047360.01 | -0.807792 | 4.251518e-50 | 2.389978e-47 |
| MsG0380016054.01 | MsG0580024938.01 | 0.807960 | 3.916195e-50 | 2.211144e-47 |
| MsG0480018333.01 | MsG0580024938.01 | 0.802178 | 6.345121e-49 | 3.087558e-46 |
| MsG0280006595.01 | MsG0580024938.01 | 0.828794 | 7.372532e-55 | 7.404024e-52 |
| MsG0280007253.01 | MsG0580024938.01 | 0.817980 | 2.488791e-52 | 1.839512e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024938.01.T01 | MTR_5g019680 | 93.529 | 170 | 10 | 1 | 1 | 170 | 1 | 169 | 8.60e-104 | 296 |
| MsG0580024938.01.T01 | MTR_5g019650 | 89.571 | 163 | 9 | 2 | 1 | 156 | 1 | 162 | 2.52e-99 | 285 |
| MsG0580024938.01.T01 | MTR_4g107650 | 40.141 | 142 | 70 | 3 | 34 | 160 | 67 | 208 | 4.95e-23 | 93.6 |
| MsG0580024938.01.T01 | MTR_3g086790 | 61.972 | 71 | 27 | 0 | 54 | 124 | 60 | 130 | 1.44e-22 | 91.7 |
| MsG0580024938.01.T01 | MTR_8g089895 | 56.250 | 80 | 35 | 0 | 45 | 124 | 45 | 124 | 2.44e-22 | 91.3 |
| MsG0580024938.01.T01 | MTR_6g007647 | 58.904 | 73 | 30 | 0 | 54 | 126 | 33 | 105 | 3.72e-22 | 89.7 |
| MsG0580024938.01.T01 | MTR_6g007647 | 58.904 | 73 | 30 | 0 | 54 | 126 | 67 | 139 | 7.42e-22 | 89.7 |
| MsG0580024938.01.T01 | MTR_5g038280 | 60.563 | 71 | 28 | 0 | 54 | 124 | 87 | 157 | 1.20e-20 | 87.0 |
| MsG0580024938.01.T01 | MTR_6g011610 | 50.505 | 99 | 49 | 0 | 45 | 143 | 87 | 185 | 1.38e-20 | 85.9 |
| MsG0580024938.01.T01 | MTR_6g011610 | 50.505 | 99 | 49 | 0 | 45 | 143 | 68 | 166 | 1.77e-20 | 85.5 |
| MsG0580024938.01.T01 | MTR_8g468210 | 46.809 | 94 | 50 | 0 | 46 | 139 | 69 | 162 | 2.42e-20 | 85.5 |
| MsG0580024938.01.T01 | MTR_1g061660 | 45.545 | 101 | 55 | 0 | 54 | 154 | 59 | 159 | 3.00e-20 | 84.3 |
| MsG0580024938.01.T01 | MTR_8g469430 | 58.571 | 70 | 29 | 0 | 54 | 123 | 89 | 158 | 3.11e-20 | 85.1 |
| MsG0580024938.01.T01 | MTR_3g092150 | 47.959 | 98 | 44 | 1 | 56 | 153 | 40 | 130 | 4.19e-20 | 84.3 |
| MsG0580024938.01.T01 | MTR_5g039000 | 44.737 | 114 | 58 | 1 | 46 | 159 | 69 | 177 | 4.47e-20 | 84.7 |
| MsG0580024938.01.T01 | MTR_3g080100 | 43.396 | 106 | 60 | 0 | 48 | 153 | 14 | 119 | 2.94e-19 | 81.3 |
| MsG0580024938.01.T01 | MTR_3g080100 | 44.660 | 103 | 57 | 0 | 51 | 153 | 56 | 158 | 5.64e-19 | 81.3 |
| MsG0580024938.01.T01 | MTR_7g103340 | 45.918 | 98 | 53 | 0 | 48 | 145 | 57 | 154 | 7.04e-19 | 80.9 |
| MsG0580024938.01.T01 | MTR_8g026960 | 63.793 | 58 | 21 | 0 | 58 | 115 | 38 | 95 | 1.02e-17 | 77.8 |
| MsG0580024938.01.T01 | MTR_7g010020 | 47.778 | 90 | 47 | 0 | 54 | 143 | 80 | 169 | 1.09e-15 | 72.8 |
| MsG0580024938.01.T01 | MTR_4g084750 | 43.564 | 101 | 43 | 1 | 54 | 154 | 65 | 151 | 1.03e-13 | 66.2 |
| MsG0580024938.01.T01 | MTR_4g100550 | 43.564 | 101 | 43 | 1 | 54 | 154 | 120 | 206 | 2.67e-13 | 66.2 |
| MsG0580024938.01.T01 | MTR_8g006705 | 45.263 | 95 | 47 | 1 | 54 | 143 | 146 | 240 | 1.02e-12 | 65.1 |
| MsG0580024938.01.T01 | MTR_2g061030 | 38.017 | 121 | 61 | 1 | 34 | 154 | 180 | 286 | 1.69e-12 | 64.3 |
| MsG0580024938.01.T01 | MTR_1g054285 | 38.938 | 113 | 55 | 1 | 42 | 154 | 142 | 240 | 1.74e-12 | 64.3 |
| MsG0580024938.01.T01 | MTR_4g097600 | 45.263 | 95 | 47 | 1 | 54 | 143 | 127 | 221 | 1.80e-12 | 63.9 |
| MsG0580024938.01.T01 | MTR_1g017090 | 42.574 | 101 | 44 | 1 | 54 | 154 | 130 | 216 | 3.63e-12 | 63.2 |
| MsG0580024938.01.T01 | MTR_7g093430 | 41.584 | 101 | 45 | 1 | 54 | 154 | 160 | 246 | 1.57e-11 | 61.6 |
| MsG0580024938.01.T01 | MTR_5g014890 | 45.263 | 95 | 47 | 1 | 54 | 143 | 123 | 217 | 3.08e-11 | 60.5 |
| MsG0580024938.01.T01 | MTR_5g013010 | 43.158 | 95 | 49 | 1 | 54 | 143 | 136 | 230 | 6.22e-11 | 59.7 |
| MsG0580024938.01.T01 | MTR_3g103590 | 43.836 | 73 | 41 | 0 | 52 | 124 | 143 | 215 | 6.44e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024938.01.T01 | AT4G36740 | 60.000 | 160 | 56 | 6 | 1 | 155 | 1 | 157 | 1.66e-56 | 177 |
| MsG0580024938.01.T01 | AT2G18550 | 53.333 | 180 | 70 | 6 | 1 | 169 | 1 | 177 | 4.20e-56 | 176 |
| MsG0580024938.01.T01 | AT4G36740 | 60.625 | 160 | 54 | 7 | 1 | 155 | 1 | 156 | 7.32e-56 | 175 |
| MsG0580024938.01.T01 | AT5G66700 | 53.659 | 164 | 63 | 3 | 5 | 155 | 9 | 172 | 7.60e-46 | 150 |
| MsG0580024938.01.T01 | AT3G01470 | 34.706 | 170 | 97 | 3 | 2 | 157 | 13 | 182 | 3.64e-24 | 95.5 |
| MsG0580024938.01.T01 | AT1G69780 | 38.961 | 154 | 80 | 3 | 2 | 143 | 23 | 174 | 1.25e-23 | 94.4 |
| MsG0580024938.01.T01 | AT2G22430 | 64.789 | 71 | 25 | 0 | 54 | 124 | 62 | 132 | 2.24e-22 | 91.7 |
| MsG0580024938.01.T01 | AT4G40060 | 63.380 | 71 | 26 | 0 | 54 | 124 | 59 | 129 | 2.53e-22 | 90.9 |
| MsG0580024938.01.T01 | AT5G65310 | 57.143 | 77 | 33 | 0 | 43 | 119 | 43 | 119 | 1.33e-21 | 89.0 |
| MsG0580024938.01.T01 | AT5G65310 | 57.143 | 77 | 33 | 0 | 43 | 119 | 61 | 137 | 1.66e-21 | 89.0 |
| MsG0580024938.01.T01 | AT5G03790 | 39.683 | 126 | 75 | 1 | 14 | 139 | 38 | 162 | 2.53e-20 | 84.7 |
| MsG0580024938.01.T01 | AT2G46680 | 48.000 | 100 | 51 | 1 | 48 | 146 | 26 | 125 | 3.32e-20 | 84.7 |
| MsG0580024938.01.T01 | AT2G46680 | 45.370 | 108 | 52 | 1 | 48 | 155 | 26 | 126 | 3.62e-20 | 84.7 |
| MsG0580024938.01.T01 | AT5G03790 | 40.496 | 121 | 71 | 1 | 19 | 139 | 43 | 162 | 5.78e-20 | 82.8 |
| MsG0580024938.01.T01 | AT5G53980 | 38.095 | 126 | 78 | 0 | 45 | 170 | 2 | 127 | 1.27e-19 | 80.9 |
| MsG0580024938.01.T01 | AT2G36610 | 45.370 | 108 | 51 | 2 | 46 | 145 | 63 | 170 | 2.77e-19 | 80.9 |
| MsG0580024938.01.T01 | AT1G26960 | 52.222 | 90 | 43 | 0 | 54 | 143 | 71 | 160 | 4.11e-19 | 81.6 |
| MsG0580024938.01.T01 | AT3G01220 | 51.852 | 81 | 38 | 1 | 45 | 124 | 77 | 157 | 3.32e-18 | 79.7 |
| MsG0580024938.01.T01 | AT3G61890 | 44.444 | 99 | 55 | 0 | 57 | 155 | 33 | 131 | 5.35e-18 | 78.6 |
| MsG0580024938.01.T01 | AT5G15150 | 58.209 | 67 | 28 | 0 | 54 | 120 | 115 | 181 | 6.25e-18 | 79.3 |
| MsG0580024938.01.T01 | AT1G27045 | 40.152 | 132 | 66 | 1 | 52 | 170 | 15 | 146 | 2.92e-17 | 75.1 |
| MsG0580024938.01.T01 | AT1G27045 | 40.152 | 132 | 66 | 1 | 52 | 170 | 23 | 154 | 3.55e-17 | 75.1 |
| MsG0580024938.01.T01 | AT1G27045 | 40.152 | 132 | 66 | 1 | 52 | 170 | 23 | 154 | 3.55e-17 | 75.1 |
| MsG0580024938.01.T01 | AT1G27045 | 40.152 | 132 | 66 | 1 | 52 | 170 | 66 | 197 | 7.03e-17 | 75.5 |
| MsG0580024938.01.T01 | AT1G27045 | 55.882 | 68 | 30 | 0 | 52 | 119 | 66 | 133 | 1.78e-16 | 74.7 |
| MsG0580024938.01.T01 | AT2G22800 | 44.211 | 95 | 48 | 1 | 54 | 143 | 113 | 207 | 2.11e-12 | 63.9 |
| MsG0580024938.01.T01 | AT4G16780 | 40.741 | 108 | 54 | 2 | 41 | 143 | 121 | 223 | 3.00e-12 | 63.5 |
| MsG0580024938.01.T01 | AT2G01430 | 37.607 | 117 | 55 | 2 | 54 | 166 | 139 | 241 | 5.88e-12 | 62.8 |
| MsG0580024938.01.T01 | AT5G47370 | 35.659 | 129 | 78 | 1 | 20 | 143 | 96 | 224 | 7.21e-12 | 62.4 |
| MsG0580024938.01.T01 | AT4G17460 | 40.385 | 104 | 57 | 1 | 45 | 143 | 126 | 229 | 1.26e-11 | 61.6 |
| MsG0580024938.01.T01 | AT4G37790 | 43.158 | 95 | 49 | 1 | 54 | 143 | 126 | 220 | 1.81e-11 | 61.2 |
| MsG0580024938.01.T01 | AT5G06710 | 36.667 | 120 | 62 | 1 | 35 | 154 | 171 | 276 | 4.56e-11 | 60.5 |
Find 32 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTGAGAAATTATT+TGG | 0.079303 | 5:-11935977 | None:intergenic |
| TCCACCTAGCCCTTCGATTC+TGG | 0.220585 | 5:-11936301 | None:intergenic |
| TGATGAACAAATGAAAATTT+TGG | 0.274227 | 5:+11936181 | MsG0580024938.01.T01:CDS |
| GAACCAAACTGCAACTTGTC+TGG | 0.307826 | 5:-11936279 | None:intergenic |
| GAAGTACTAGAGCTACTATT+TGG | 0.364392 | 5:-11937381 | None:intergenic |
| ATCCCAGACAAGTTGCAGTT+TGG | 0.404850 | 5:+11936276 | MsG0580024938.01.T01:CDS |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5:-11936101 | None:intergenic |
| ACCTTGTTGAGAAATTATTT+GGG | 0.435398 | 5:-11935976 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.440743 | 5:-11936397 | None:intergenic |
| TTCATCAATTTCACAATCCA+TGG | 0.444425 | 5:+11937401 | MsG0580024938.01.T01:CDS |
| ATTTGGGTGTATTCACAAGC+TGG | 0.458844 | 5:-11935960 | None:intergenic |
| ACTGAGACATAAGCATCATT+TGG | 0.463969 | 5:-11935932 | None:intergenic |
| GATAGACTTGCAATGGAGCT+TGG | 0.475779 | 5:+11936248 | MsG0580024938.01.T01:CDS |
| TTTCACAATCCATGGAATAG+TGG | 0.479151 | 5:+11937409 | MsG0580024938.01.T01:CDS |
| AAGGAGACACTTCTCAAGAA+TGG | 0.492858 | 5:-11936378 | None:intergenic |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5:+11936226 | MsG0580024938.01.T01:CDS |
| AACCAAACTGCAACTTGTCT+GGG | 0.501567 | 5:-11936278 | None:intergenic |
| CAGTTTGGTTCCAGAATCGA+AGG | 0.504708 | 5:+11936291 | MsG0580024938.01.T01:CDS |
| TTTGGGTGTATTCACAAGCT+GGG | 0.519334 | 5:-11935959 | None:intergenic |
| GGTTCCAGAATCGAAGGGCT+AGG | 0.526167 | 5:+11936297 | MsG0580024938.01.T01:CDS |
| GCAGCTTTCTGAGGCAGAGA+AGG | 0.540038 | 5:+11937338 | MsG0580024938.01.T01:CDS |
| GAAGAAGGATAGACTTGCAA+TGG | 0.545678 | 5:+11936241 | MsG0580024938.01.T01:CDS |
| ATTGTGGGTCCACTATTCCA+TGG | 0.554026 | 5:-11937418 | None:intergenic |
| AGCTACTATTTGGCTCTCGA+AGG | 0.571565 | 5:-11937371 | None:intergenic |
| GCTAACAGAGCAGCTTTCTG+AGG | 0.593252 | 5:+11937329 | MsG0580024938.01.T01:CDS |
| CGTAGTAAGAAGAACAAAGG+TGG | 0.606299 | 5:+11936113 | MsG0580024938.01.T01:CDS |
| GAGACACTTCTCAAGAATGG+TGG | 0.632257 | 5:-11936375 | None:intergenic |
| GAAGTGTCTCCTTGAAACCA+AGG | 0.638232 | 5:+11936388 | MsG0580024938.01.T01:CDS |
| ACCCAAATAATTTCTCAACA+AGG | 0.645027 | 5:+11935975 | MsG0580024938.01.T01:CDS |
| TCCAGAATCGAAGGGCTAGG+TGG | 0.655135 | 5:+11936300 | MsG0580024938.01.T01:CDS |
| AAGCGTAGTAAGAAGAACAA+AGG | 0.668285 | 5:+11936110 | MsG0580024938.01.T01:CDS |
| AGTTTGGTTCCAGAATCGAA+GGG | 0.690392 | 5:+11936292 | MsG0580024938.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAATTGAACATATA+AGG | - | Chr5:11937297-11937316 | None:intergenic | 10.0% |
| !! | AATATATAAAAACAAAAACA+AGG | + | Chr5:11937006-11937025 | MsG0580024938.01.T01:intron | 10.0% |
| !! | ATAATAAATTAAATAAGAAG+AGG | - | Chr5:11936428-11936447 | None:intergenic | 10.0% |
| !! | TTATTAAAAATTAAAATCAG+TGG | + | Chr5:11936501-11936520 | MsG0580024938.01.T01:intron | 10.0% |
| !!! | ATATTTTGTTATGTTTTTTT+AGG | + | Chr5:11936062-11936081 | MsG0580024938.01.T01:intron | 10.0% |
| !!! | TATTTTGTTATGTTTTTTTA+GGG | + | Chr5:11936063-11936082 | MsG0580024938.01.T01:intron | 10.0% |
| !! | AAAATGAAGAAAATATTGTA+CGG | - | Chr5:11937096-11937115 | None:intergenic | 15.0% |
| !!! | AAAATTTTGGAAGAAAATTT+TGG | + | Chr5:11936194-11936213 | MsG0580024938.01.T01:CDS | 15.0% |
| !!! | ACTTTATCATTTTTCATTTA+AGG | - | Chr5:11936823-11936842 | None:intergenic | 15.0% |
| !!! | ATTTTGTTATGTTTTTTTAG+GGG | + | Chr5:11936064-11936083 | MsG0580024938.01.T01:intron | 15.0% |
| !!! | CTTTATCATTTTTCATTTAA+GGG | - | Chr5:11936822-11936841 | None:intergenic | 15.0% |
| !!! | TTTATCATTTTTCATTTAAG+GGG | - | Chr5:11936821-11936840 | None:intergenic | 15.0% |
| !! | ACACTAGTATATAATATTGT+TGG | - | Chr5:11936576-11936595 | None:intergenic | 20.0% |
| !! | ATTGAACATATAAGGTAATT+AGG | - | Chr5:11937289-11937308 | None:intergenic | 20.0% |
| !! | TCTAAGCAAAGATTATTAAA+AGG | - | Chr5:11937245-11937264 | None:intergenic | 20.0% |
| !!! | GTACAATATTTTCTTCATTT+TGG | + | Chr5:11937095-11937114 | MsG0580024938.01.T01:intron | 20.0% |
| !!! | TGATGAACAAATGAAAATTT+TGG | + | Chr5:11936181-11936200 | MsG0580024938.01.T01:CDS | 20.0% |
| ! | AACCTTGTTGAGAAATTATT+TGG | - | Chr5:11935980-11935999 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | Chr5:11936150-11936169 | MsG0580024938.01.T01:CDS | 25.0% |
| ! | ACCTTGTTGAGAAATTATTT+GGG | - | Chr5:11935979-11935998 | None:intergenic | 25.0% |
| ! | AGAAAATATTGTACGGAATT+AGG | - | Chr5:11937089-11937108 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+GGG | - | Chr5:11936747-11936766 | None:intergenic | 25.0% |
| ! | GAGAACTTTAATAATGTGAA+CGG | - | Chr5:11936911-11936930 | None:intergenic | 25.0% |
| ! | TATTCTCTCTTTCAACATTT+AGG | - | Chr5:11936748-11936767 | None:intergenic | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | Chr5:11936154-11936173 | None:intergenic | 25.0% |
| AACACTAGTAACGTCAATTT+AGG | + | Chr5:11936619-11936638 | MsG0580024938.01.T01:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | Chr5:11936620-11936639 | MsG0580024938.01.T01:intron | 30.0% | |
| ACATAACATGAATGATCATG+TGG | - | Chr5:11936943-11936962 | None:intergenic | 30.0% | |
| ACCCAAATAATTTCTCAACA+AGG | + | Chr5:11935975-11935994 | MsG0580024938.01.T01:CDS | 30.0% | |
| ATTGTTGGAGAAATGATGAT+TGG | - | Chr5:11936561-11936580 | None:intergenic | 30.0% | |
| TCTACTTCATGATAACAAGT+TGG | - | Chr5:11937134-11937153 | None:intergenic | 30.0% | |
| TTCATCAATTTCACAATCCA+TGG | + | Chr5:11937401-11937420 | MsG0580024938.01.T01:CDS | 30.0% | |
| TTCTCTCTTTCAACATTTAG+GGG | - | Chr5:11936746-11936765 | None:intergenic | 30.0% | |
| !! | AGTGTTGTTTGTTGTCTTTA+AGG | - | Chr5:11937048-11937067 | None:intergenic | 30.0% |
| AAATAAGAAGAGGAAGCAAG+AGG | - | Chr5:11936418-11936437 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | Chr5:11936110-11936129 | MsG0580024938.01.T01:CDS | 35.0% | |
| ACTGAGACATAAGCATCATT+TGG | - | Chr5:11935935-11935954 | None:intergenic | 35.0% | |
| CTTTAATAATGTGAACGGCT+TGG | - | Chr5:11936906-11936925 | None:intergenic | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | Chr5:11936226-11936245 | MsG0580024938.01.T01:CDS | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | Chr5:11936753-11936772 | MsG0580024938.01.T01:intron | 35.0% | |
| ! | GAAGTACTAGAGCTACTATT+TGG | - | Chr5:11937384-11937403 | None:intergenic | 35.0% |
| ! | TTCATTTTGGACCTTTCTCA+AGG | + | Chr5:11937108-11937127 | MsG0580024938.01.T01:intron | 35.0% |
| AACCAAACTGCAACTTGTCT+GGG | - | Chr5:11936281-11936300 | None:intergenic | 40.0% | |
| AAGGAGACACTTCTCAAGAA+TGG | - | Chr5:11936381-11936400 | None:intergenic | 40.0% | |
| ATATGCACGTTCATATGTGG+TGG | - | Chr5:11936858-11936877 | None:intergenic | 40.0% | |
| ATGCTACCATGTTTCTTCTC+TGG | + | Chr5:11936648-11936667 | MsG0580024938.01.T01:intron | 40.0% | |
| ATTTGGGTGTATTCACAAGC+TGG | - | Chr5:11935963-11935982 | None:intergenic | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | Chr5:11936113-11936132 | MsG0580024938.01.T01:CDS | 40.0% | |
| CTCATATGCACGTTCATATG+TGG | - | Chr5:11936861-11936880 | None:intergenic | 40.0% | |
| GAAGAAGGATAGACTTGCAA+TGG | + | Chr5:11936241-11936260 | MsG0580024938.01.T01:CDS | 40.0% | |
| TAATGAAAGAGACATGCACG+TGG | - | Chr5:11937216-11937235 | None:intergenic | 40.0% | |
| TATGCACGTTCATATGTGGT+GGG | - | Chr5:11936857-11936876 | None:intergenic | 40.0% | |
| TTTGGGTGTATTCACAAGCT+GGG | - | Chr5:11935962-11935981 | None:intergenic | 40.0% | |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | Chr5:11936400-11936419 | None:intergenic | 40.0% |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | Chr5:11936292-11936311 | MsG0580024938.01.T01:CDS | 40.0% |
| ! | GGACATTGATTAGAGGGTAA+TGG | - | Chr5:11937189-11937208 | None:intergenic | 40.0% |
| ! | GGTGTAGGACATTGATTAGA+GGG | - | Chr5:11937195-11937214 | None:intergenic | 40.0% |
| ! | TGGTGTAGGACATTGATTAG+AGG | - | Chr5:11937196-11937215 | None:intergenic | 40.0% |
| !! | AGGGTAATGGAGTTTCACTT+GGG | - | Chr5:11937176-11937195 | None:intergenic | 40.0% |
| !! | TAACAAGTTGGCCTTGAGAA+AGG | - | Chr5:11937122-11937141 | None:intergenic | 40.0% |
| AGACCACCAGAGAAGAAACA+TGG | - | Chr5:11936657-11936676 | None:intergenic | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | Chr5:11936276-11936295 | MsG0580024938.01.T01:CDS | 45.0% | |
| ATGAACGTGCATATGAGCTC+TGG | + | Chr5:11936864-11936883 | MsG0580024938.01.T01:intron | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | + | Chr5:11936651-11936670 | MsG0580024938.01.T01:intron | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | Chr5:11936282-11936301 | None:intergenic | 45.0% | |
| GAGACACTTCTCAAGAATGG+TGG | - | Chr5:11936378-11936397 | None:intergenic | 45.0% | |
| GATAGACTTGCAATGGAGCT+TGG | + | Chr5:11936248-11936267 | MsG0580024938.01.T01:CDS | 45.0% | |
| TGAACGTGCATATGAGCTCT+GGG | + | Chr5:11936865-11936884 | MsG0580024938.01.T01:intron | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | Chr5:11936104-11936123 | None:intergenic | 45.0% | |
| TTGCTTTGTCCTGAAGAACC+CGG | - | Chr5:11936786-11936805 | None:intergenic | 45.0% | |
| ! | AGGAAGCAAGAGGTATACCT+TGG | - | Chr5:11936408-11936427 | None:intergenic | 45.0% |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | Chr5:11936291-11936310 | MsG0580024938.01.T01:CDS | 45.0% |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | Chr5:11936388-11936407 | MsG0580024938.01.T01:CDS | 45.0% |
| !! | AATAAGCACTGGCATGCAAC+CGG | + | Chr5:11936764-11936783 | MsG0580024938.01.T01:intron | 45.0% |
| !! | AGCTACTATTTGGCTCTCGA+AGG | - | Chr5:11937374-11937393 | None:intergenic | 45.0% |
| !! | GAGGGTAATGGAGTTTCACT+TGG | - | Chr5:11937177-11937196 | None:intergenic | 45.0% |
| AAGAGACATGCACGTGGTGT+AGG | - | Chr5:11937210-11937229 | None:intergenic | 50.0% | |
| GCTAACAGAGCAGCTTTCTG+AGG | + | Chr5:11937329-11937348 | MsG0580024938.01.T01:CDS | 50.0% | |
| !! | ATAAGCACTGGCATGCAACC+GGG | + | Chr5:11936765-11936784 | MsG0580024938.01.T01:intron | 50.0% |
| GGTTCCAGAATCGAAGGGCT+AGG | + | Chr5:11936297-11936316 | MsG0580024938.01.T01:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | Chr5:11936304-11936323 | None:intergenic | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | Chr5:11936300-11936319 | MsG0580024938.01.T01:CDS | 55.0% | |
| !! | GCAGCTTTCTGAGGCAGAGA+AGG | + | Chr5:11937338-11937357 | MsG0580024938.01.T01:CDS | 55.0% |
| GGCATGCAACCGGGTTCTTC+AGG | + | Chr5:11936774-11936793 | MsG0580024938.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 11935918 | 11937428 | 11935918 | ID=MsG0580024938.01;Name=MsG0580024938.01 |
| Chr5 | mRNA | 11935918 | 11937428 | 11935918 | ID=MsG0580024938.01.T01;Parent=MsG0580024938.01;Name=MsG0580024938.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|3|0|170 |
| Chr5 | exon | 11935918 | 11935996 | 11935918 | ID=MsG0580024938.01.T01:exon:26742;Parent=MsG0580024938.01.T01 |
| Chr5 | exon | 11936084 | 11936409 | 11936084 | ID=MsG0580024938.01.T01:exon:26743;Parent=MsG0580024938.01.T01 |
| Chr5 | exon | 11937321 | 11937428 | 11937321 | ID=MsG0580024938.01.T01:exon:26744;Parent=MsG0580024938.01.T01 |
| Chr5 | CDS | 11935918 | 11935996 | 11935918 | ID=MsG0580024938.01.T01:cds;Parent=MsG0580024938.01.T01 |
| Chr5 | CDS | 11936084 | 11936409 | 11936084 | ID=MsG0580024938.01.T01:cds;Parent=MsG0580024938.01.T01 |
| Chr5 | CDS | 11937321 | 11937428 | 11937321 | ID=MsG0580024938.01.T01:cds;Parent=MsG0580024938.01.T01 |
| Gene Sequence |
| Protein sequence |
