AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025141.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025141.01.T01 MTR_5g022860 98.283 233 4 0 22 254 1 233 6.14e-172 473
MsG0580025141.01.T01 MTR_3g096570 89.831 118 7 1 142 254 150 267 3.19e-67 209
MsG0580025141.01.T01 MTR_3g096562 84.921 126 12 2 136 254 270 395 1.07e-62 201
MsG0580025141.01.T01 MTR_2g078490 70.270 111 18 1 144 254 441 536 6.42e-39 142
MsG0580025141.01.T01 MTR_7g113850 31.690 142 81 3 61 187 139 279 2.86e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025141.01.T01 AT1G63855 76.303 211 47 2 44 252 9 218 3.84e-117 334
MsG0580025141.01.T01 AT1G63855 65.877 211 42 3 44 252 9 191 2.63e-92 270
MsG0580025141.01.T01 AT1G63855 68.000 150 45 2 44 191 9 157 8.00e-67 204
MsG0580025141.01.T01 AT1G63855 68.000 150 45 2 44 191 9 157 8.00e-67 204
MsG0580025141.01.T01 AT1G63855 70.192 104 28 2 44 145 9 111 1.43e-46 151
MsG0580025141.01.T01 AT1G63855 70.192 104 28 2 44 145 9 111 1.43e-46 151

Find 59 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGCCTTCTGCTGTAATTC+TGG 0.132363 5:+14290568 MsG0580025141.01.T01:CDS
TCGAGTTCTTGATGCGAAAA+TGG 0.190254 5:+14292520 MsG0580025141.01.T01:CDS
ATGTCTCCCGCCAAAGAAAA+TGG 0.196443 5:-14290312 None:intergenic
TAATTCTGGGCGAGTATATT+TGG 0.205875 5:+14290582 MsG0580025141.01.T01:CDS
TTACGACCTACAATTATTCT+AGG 0.242560 5:+14292166 MsG0580025141.01.T01:CDS
TGTAGGTCGTAAATCAAATA+TGG 0.295737 5:-14292155 None:intergenic
TATCATTGCTCTTGTATATA+AGG 0.300760 5:+14290265 None:intergenic
TAGGACTGACATGGGGAGTT+TGG 0.301837 5:+14292125 MsG0580025141.01.T01:CDS
ATGAAAAGTACCTTCTATTA+TGG 0.310956 5:-14292373 None:intergenic
AAGTGTCTCAAGCTTCTTGA+TGG 0.312433 5:+14292549 MsG0580025141.01.T01:CDS
CGCCAAAGAAAATGGGGTTT+TGG 0.315838 5:-14290304 None:intergenic
TGATGACTCCACCAGATTAG+AGG 0.326697 5:+14290789 MsG0580025141.01.T01:CDS
TTCTATCCTACCATCCTTCA+AGG 0.334225 5:+14292575 MsG0580025141.01.T01:CDS
TGGAACTTGCTTACCTGGTT+TGG 0.347388 5:+14290732 MsG0580025141.01.T01:CDS
AGGACTGACATGGGGAGTTT+GGG 0.363410 5:+14292126 MsG0580025141.01.T01:CDS
CGAGTTCTTGATGCGAAAAT+GGG 0.371442 5:+14292521 MsG0580025141.01.T01:CDS
GGTGCTGGAACTTGCTTACC+TGG 0.375474 5:+14290727 MsG0580025141.01.T01:CDS
ACTTAGCTGAGAAGCCTTGA+AGG 0.408758 5:-14292589 None:intergenic
AAAGTTGAAGACCTCGATAA+TGG 0.412418 5:-14290445 None:intergenic
CAACAAAAGCACCGATTCTC+AGG 0.419420 5:+14290605 MsG0580025141.01.T01:CDS
TGTCTCCCGCCAAAGAAAAT+GGG 0.424413 5:-14290311 None:intergenic
GTACCTTCTATTATGGTATG+AGG 0.429223 5:-14292366 None:intergenic
TGGCCTTCTGCTGTAATTCT+GGG 0.448480 5:+14290569 MsG0580025141.01.T01:CDS
CAGAATCGGATTCTTCGTTC+CGG 0.449753 5:-14290347 None:intergenic
TTGCTTACCTGGTTTGGTTG+CGG 0.449796 5:+14290738 MsG0580025141.01.T01:CDS
TAACCTCATACCATAATAGA+AGG 0.454087 5:+14292363 MsG0580025141.01.T01:CDS
ATGTTTGTGTAGCTTGGTGC+TGG 0.473082 5:+14290712 MsG0580025141.01.T01:intron
CAGACTATGAGCGAGGATTA+CGG 0.475406 5:+14290536 MsG0580025141.01.T01:intron
GGCTTCTTTCTGAAGGTGCT+AGG 0.479478 5:+14292106 MsG0580025141.01.T01:intron
GCTAAGTGGAAACATTCAAT+TGG 0.482597 5:+14292605 MsG0580025141.01.T01:CDS
TTCGCATCAAGAACTCGATA+AGG 0.484262 5:-14292515 None:intergenic
TCAGCGCCTAGAATAATTGT+AGG 0.498057 5:-14292172 None:intergenic
AGTGGCTGTATTATCAGAAT+CGG 0.498888 5:-14290361 None:intergenic
TATAAGGAGTATATGCAAAC+GGG 0.509355 5:+14290281 MsG0580025141.01.T01:CDS
CAACGTTAGCTCCTGAGAAT+CGG 0.517718 5:-14290616 None:intergenic
ATATAAGGAGTATATGCAAA+CGG 0.527679 5:+14290280 MsG0580025141.01.T01:CDS
GGTTTGGTTGCGGCAAAAGT+TGG 0.540499 5:+14290748 MsG0580025141.01.T01:CDS
TTCCTGCTTCAAAATTCACC+TGG 0.542189 5:+14292329 MsG0580025141.01.T01:CDS
TTCAAGGCTTCTCAGCTAAG+TGG 0.557955 5:+14292591 MsG0580025141.01.T01:CDS
CTCAGGAGCTAACGTTGTTG+AGG 0.559345 5:+14290622 MsG0580025141.01.T01:CDS
AAGTGGAAACATTCAATTGG+TGG 0.569922 5:+14292608 MsG0580025141.01.T01:CDS
AGCTGAGAAGCCTTGAAGGA+TGG 0.578858 5:-14292585 None:intergenic
AATTCTGCTCATAGTCATAG+TGG 0.579897 5:-14290379 None:intergenic
GAGAAGCCTTGAAGGATGGT+AGG 0.584686 5:-14292581 None:intergenic
TCGCCCAGAATTACAGCAGA+AGG 0.588542 5:-14290572 None:intergenic
TGAAGGTGCTAGGACTGACA+TGG 0.595570 5:+14292116 MsG0580025141.01.T01:intron
GAGACATGGAAGAAGATGAC+CGG 0.603265 5:+14290328 MsG0580025141.01.T01:CDS
GAGTTCTTGATGCGAAAATG+GGG 0.618784 5:+14292522 MsG0580025141.01.T01:CDS
TCTCACAATTTCCATTATCG+AGG 0.623357 5:+14290434 MsG0580025141.01.T01:CDS
TTCCACACAGACTATGAGCG+AGG 0.629697 5:+14290529 MsG0580025141.01.T01:intron
GGAATGTCACAGTGGCAAAG+AGG 0.634637 5:-14292310 None:intergenic
GTCTCCCGCCAAAGAAAATG+GGG 0.639338 5:-14290310 None:intergenic
ACATCGAAAGATAATGCTTG+AGG 0.642960 5:+14292642 MsG0580025141.01.T01:CDS
GAAGGTGCTAGGACTGACAT+GGG 0.653850 5:+14292117 MsG0580025141.01.T01:intron
AGTTCTTGATGCGAAAATGG+GGG 0.655640 5:+14292523 MsG0580025141.01.T01:CDS
GACGTGTTGTATGACTCAAA+TGG 0.659811 5:+14292193 MsG0580025141.01.T01:CDS
AGGATTACGGCTTATACGTG+TGG 0.694720 5:+14290549 MsG0580025141.01.T01:CDS
AAGGTGCTAGGACTGACATG+GGG 0.740494 5:+14292118 MsG0580025141.01.T01:intron
TTGAAGCAGGAATGTCACAG+TGG 0.749256 5:-14292318 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATCACTAAATAAAC+AGG - Chr5:14290825-14290844 None:intergenic 15.0%
!! ACTCTAATATTAAAATGAAA+AGG - Chr5:14291973-14291992 None:intergenic 15.0%
!! CTTTAATAAGAGTTTAATTA+AGG + Chr5:14291678-14291697 MsG0580025141.01.T01:intron 15.0%
!! TGTTTATAAAATCTCATATT+TGG + Chr5:14291643-14291662 MsG0580025141.01.T01:intron 15.0%
!!! AATTTAGTTTGTATAATCAT+CGG + Chr5:14290881-14290900 MsG0580025141.01.T01:intron 15.0%
!!! AGTGATATATTTTTGAAATT+AGG + Chr5:14290833-14290852 MsG0580025141.01.T01:intron 15.0%
!! ATGAAAACAAATACAAATCA+TGG - Chr5:14290692-14290711 None:intergenic 20.0%
!! TAAACTCTTATTAAAGCTTA+TGG - Chr5:14291674-14291693 None:intergenic 20.0%
!! TAAATACTACTAACGAAAAT+CGG - Chr5:14291784-14291803 None:intergenic 20.0%
!!! AAGTGTTTGAAATTTTTTAG+AGG + Chr5:14290856-14290875 MsG0580025141.01.T01:intron 20.0%
!!! ACTATAAATTAGTTTTACAC+TGG + Chr5:14291284-14291303 MsG0580025141.01.T01:intron 20.0%
!!! CCATTTTTACAAATTACTAT+CGG - Chr5:14291444-14291463 None:intergenic 20.0%
!!! GTAAAATAATGAATTTTCAC+AGG - Chr5:14291313-14291332 None:intergenic 20.0%
! AAATACTACTAACGAAAATC+GGG - Chr5:14291783-14291802 None:intergenic 25.0%
! AAGATAAGTACTAGAGTTAA+TGG - Chr5:14291612-14291631 None:intergenic 25.0%
! ACATAATTTCTATCGAATGT+CGG - Chr5:14290955-14290974 None:intergenic 25.0%
! AGATAAGTACTAGAGTTAAT+GGG - Chr5:14291611-14291630 None:intergenic 25.0%
! ATTTAAAGGATATGCAACAT+CGG + Chr5:14290912-14290931 MsG0580025141.01.T01:intron 25.0%
! CTTTAGTAAGGGTTTAATTA+AGG + Chr5:14291149-14291168 MsG0580025141.01.T01:intron 25.0%
! GATATGATATGACAAAATAG+CGG + Chr5:14291006-14291025 MsG0580025141.01.T01:intron 25.0%
! GTTTATCAATATGACACAAT+GGG + Chr5:14291756-14291775 MsG0580025141.01.T01:intron 25.0%
! TAGAATGTAATCATATGTGT+CGG + Chr5:14291469-14291488 MsG0580025141.01.T01:intron 25.0%
! TTAGTACATCAAATCCAAAA+AGG - Chr5:14292254-14292273 None:intergenic 25.0%
! TTGTAACTACATCTTAAAAG+TGG + Chr5:14291348-14291367 MsG0580025141.01.T01:intron 25.0%
!! ATATAAGGAGTATATGCAAA+CGG + Chr5:14290280-14290299 MsG0580025141.01.T01:CDS 25.0%
!! CATCGGTATTTAAGATTTAA+AGG + Chr5:14290898-14290917 MsG0580025141.01.T01:intron 25.0%
!! CCGATAGTAATTTGTAAAAA+TGG + Chr5:14291441-14291460 MsG0580025141.01.T01:intron 25.0%
!! TGTTTGTTAGTTTGAGATTT+GGG - Chr5:14290501-14290520 None:intergenic 25.0%
!!! AATGGTTTTAAGGGATTTAA+AGG + Chr5:14291243-14291262 MsG0580025141.01.T01:intron 25.0%
!!! ATGAAAAGTACCTTCTATTA+TGG - Chr5:14292376-14292395 None:intergenic 25.0%
!!! TTGTAGCTACATTTTAAAAG+TGG + Chr5:14290977-14290996 MsG0580025141.01.T01:intron 25.0%
AATACTACTAACGAAAATCG+GGG - Chr5:14291782-14291801 None:intergenic 30.0%
ACCGAAATTTCTGATTAAAG+GGG - Chr5:14291529-14291548 None:intergenic 30.0%
CACCGAAATTTCTGATTAAA+GGG - Chr5:14291530-14291549 None:intergenic 30.0%
GAAGAAAAAAACCTCTAATC+TGG - Chr5:14290803-14290822 None:intergenic 30.0%
GAGGTTATAAAAATTGATCC+AGG - Chr5:14292350-14292369 None:intergenic 30.0%
GGTTTATCAATATGACACAA+TGG + Chr5:14291755-14291774 MsG0580025141.01.T01:intron 30.0%
GTAAAACTACTTAACTACAC+TGG + Chr5:14291051-14291070 MsG0580025141.01.T01:intron 30.0%
TAAACCCTTACTAAAGCTTA+TGG - Chr5:14291145-14291164 None:intergenic 30.0%
TAACCTCATACCATAATAGA+AGG + Chr5:14292363-14292382 MsG0580025141.01.T01:CDS 30.0%
TACATCAAATCCAAAAAGGA+AGG - Chr5:14292250-14292269 None:intergenic 30.0%
TCACCGAAATTTCTGATTAA+AGG - Chr5:14291531-14291550 None:intergenic 30.0%
TGTAGGTCGTAAATCAAATA+TGG - Chr5:14292158-14292177 None:intergenic 30.0%
TTACGACCTACAATTATTCT+AGG + Chr5:14292166-14292185 MsG0580025141.01.T01:CDS 30.0%
TTTCATATGTTTGTGTAGCT+TGG + Chr5:14290706-14290725 MsG0580025141.01.T01:intron 30.0%
TTTGTGTTGTCTGAATGTAT+TGG + Chr5:14292085-14292104 MsG0580025141.01.T01:intron 30.0%
! AAAAGGCAAATTTTTCCAAC+AGG - Chr5:14291956-14291975 None:intergenic 30.0%
! ATGTCCATAAGCTTTAGTAA+GGG + Chr5:14291138-14291157 MsG0580025141.01.T01:intron 30.0%
! CTTAAAAGTGGTGATGTATA+TGG + Chr5:14291360-14291379 MsG0580025141.01.T01:intron 30.0%
! CTTTGAATCAACTGTTTTCT+GGG + Chr5:14291734-14291753 MsG0580025141.01.T01:intron 30.0%
! GTGTTTGTTAGTTTGAGATT+TGG - Chr5:14290502-14290521 None:intergenic 30.0%
! TATAAGGAGTATATGCAAAC+GGG + Chr5:14290281-14290300 MsG0580025141.01.T01:CDS 30.0%
! TTTGAATCCAACTGTTTTCT+GGG + Chr5:14291204-14291223 MsG0580025141.01.T01:intron 30.0%
!!! TGAGAAAATGGGAGTTTTTT+GGG - Chr5:14290476-14290495 None:intergenic 30.0%
AAAGTTGAAGACCTCGATAA+TGG - Chr5:14290448-14290467 None:intergenic 35.0%
AAGGTGTGTATGTTTACCAA+AGG + Chr5:14291697-14291716 MsG0580025141.01.T01:intron 35.0%
AAGTGGAAACATTCAATTGG+TGG + Chr5:14292608-14292627 MsG0580025141.01.T01:CDS 35.0%
AATTCTGCTCATAGTCATAG+TGG - Chr5:14290382-14290401 None:intergenic 35.0%
AGATTTGGGTGTGAGAAAAT+GGG - Chr5:14290487-14290506 None:intergenic 35.0%
AGCACTGTGTCTATATATCA+TGG + Chr5:14291999-14292018 MsG0580025141.01.T01:intron 35.0%
AGTGGCTGTATTATCAGAAT+CGG - Chr5:14290364-14290383 None:intergenic 35.0%
CCCCCTTTAATCAGAAATTT+CGG + Chr5:14291525-14291544 MsG0580025141.01.T01:intron 35.0%
CCGAAATTTCTGATTAAAGG+GGG - Chr5:14291528-14291547 None:intergenic 35.0%
GAAAAAAACCTCTAATCTGG+TGG - Chr5:14290800-14290819 None:intergenic 35.0%
GCTAAGTGGAAACATTCAAT+TGG + Chr5:14292605-14292624 MsG0580025141.01.T01:CDS 35.0%
GTACCTTCTATTATGGTATG+AGG - Chr5:14292369-14292388 None:intergenic 35.0%
TAATTCTGGGCGAGTATATT+TGG + Chr5:14290582-14290601 MsG0580025141.01.T01:CDS 35.0%
TCTCACAATTTCCATTATCG+AGG + Chr5:14290434-14290453 MsG0580025141.01.T01:CDS 35.0%
TTGGATTCAAAGCTACACTT+GGG - Chr5:14291195-14291214 None:intergenic 35.0%
! CATGTCCATAAGCTTTAGTA+AGG + Chr5:14291137-14291156 MsG0580025141.01.T01:intron 35.0%
! CTTTGAATCCAACTGTTTTC+TGG + Chr5:14291203-14291222 MsG0580025141.01.T01:intron 35.0%
! GTCTTTGTTACCTTCCTTTT+TGG + Chr5:14292237-14292256 MsG0580025141.01.T01:intron 35.0%
! TTCTGATTAAAGGGGGTTTT+CGG - Chr5:14291521-14291540 None:intergenic 35.0%
!! AATGGGACACAATGGTTTTA+AGG + Chr5:14291233-14291252 MsG0580025141.01.T01:intron 35.0%
!! ACAAAATAGCGGACTCATAT+TGG + Chr5:14291017-14291036 MsG0580025141.01.T01:intron 35.0%
!! ATGTATTGGCTTCTTTCTGA+AGG + Chr5:14292099-14292118 MsG0580025141.01.T01:intron 35.0%
!! GCTTTGAATCAACTGTTTTC+TGG + Chr5:14291733-14291752 MsG0580025141.01.T01:intron 35.0%
!!! ATGGGACACAATGGTTTTAA+GGG + Chr5:14291234-14291253 MsG0580025141.01.T01:intron 35.0%
!!! GTGAGAAAATGGGAGTTTTT+TGG - Chr5:14290477-14290496 None:intergenic 35.0%
!!! TGTTTTCTGGGATTGTCAAT+GGG + Chr5:14291216-14291235 MsG0580025141.01.T01:intron 35.0%
AAGTGTCTCAAGCTTCTTGA+TGG + Chr5:14292549-14292568 MsG0580025141.01.T01:CDS 40.0%
AGCAACACTTAGTACACCTT+TGG - Chr5:14291716-14291735 None:intergenic 40.0%
AGTTCTTGATGCGAAAATGG+GGG + Chr5:14292523-14292542 MsG0580025141.01.T01:CDS 40.0%
ATCACTGTAATGAAGCCTGT+TGG + Chr5:14291938-14291957 MsG0580025141.01.T01:intron 40.0%
ATGACTCAAATGGTGAGAGA+AGG + Chr5:14292203-14292222 MsG0580025141.01.T01:intron 40.0%
CGAGTTCTTGATGCGAAAAT+GGG + Chr5:14292521-14292540 MsG0580025141.01.T01:CDS 40.0%
GACGTGTTGTATGACTCAAA+TGG + Chr5:14292193-14292212 MsG0580025141.01.T01:CDS 40.0%
GAGATTTGGGTGTGAGAAAA+TGG - Chr5:14290488-14290507 None:intergenic 40.0%
GAGTTCTTGATGCGAAAATG+GGG + Chr5:14292522-14292541 MsG0580025141.01.T01:CDS 40.0%
GTTGGATTCAAAGCTACACT+TGG - Chr5:14291196-14291215 None:intergenic 40.0%
TCAGCGCCTAGAATAATTGT+AGG - Chr5:14292175-14292194 None:intergenic 40.0%
TCGAGTTCTTGATGCGAAAA+TGG + Chr5:14292520-14292539 MsG0580025141.01.T01:CDS 40.0%
TGACAATCCCAGAAAACAGT+TGG - Chr5:14291214-14291233 None:intergenic 40.0%
TGTCGAACACAAACACATGT+TGG + Chr5:14291492-14291511 MsG0580025141.01.T01:intron 40.0%
TTCCTGCTTCAAAATTCACC+TGG + Chr5:14292329-14292348 MsG0580025141.01.T01:CDS 40.0%
TTCGCATCAAGAACTCGATA+AGG - Chr5:14292518-14292537 None:intergenic 40.0%
TTCTATCCTACCATCCTTCA+AGG + Chr5:14292575-14292594 MsG0580025141.01.T01:CDS 40.0%
! AAAACCCCATTTTCTTTGGC+GGG + Chr5:14290306-14290325 MsG0580025141.01.T01:CDS 40.0%
! CAAAACCCCATTTTCTTTGG+CGG + Chr5:14290305-14290324 MsG0580025141.01.T01:CDS 40.0%
! GTGAGAGAAGGATCTGTTTT+AGG + Chr5:14292215-14292234 MsG0580025141.01.T01:intron 40.0%
! TAAATGACCGCTGCTTGTTT+TGG + Chr5:14291849-14291868 MsG0580025141.01.T01:intron 40.0%
!!! ATCCAGGTGAATTTTGAAGC+AGG - Chr5:14292334-14292353 None:intergenic 40.0%
!!! CTGTTTTCTGGGATTGTCAA+TGG + Chr5:14291215-14291234 MsG0580025141.01.T01:intron 40.0%
ACTTAGCTGAGAAGCCTTGA+AGG - Chr5:14292592-14292611 None:intergenic 45.0%
AGCTACACTTGGGACATGTT+TGG - Chr5:14291185-14291204 None:intergenic 45.0%
AGGATTACGGCTTATACGTG+TGG + Chr5:14290549-14290568 MsG0580025141.01.T01:CDS 45.0%
ATGTCTCCCGCCAAAGAAAA+TGG - Chr5:14290315-14290334 None:intergenic 45.0%
CAACGTTAGCTCCTGAGAAT+CGG - Chr5:14290619-14290638 None:intergenic 45.0%
CAGAATCGGATTCTTCGTTC+CGG - Chr5:14290350-14290369 None:intergenic 45.0%
CAGACTATGAGCGAGGATTA+CGG + Chr5:14290536-14290555 MsG0580025141.01.T01:intron 45.0%
CGGTGATACGCAGATATAGA+GGG + Chr5:14291545-14291564 MsG0580025141.01.T01:intron 45.0%
GAGACATGGAAGAAGATGAC+CGG + Chr5:14290328-14290347 MsG0580025141.01.T01:CDS 45.0%
GAGCTATGAAACACCAACAC+AGG + Chr5:14291390-14291409 MsG0580025141.01.T01:intron 45.0%
GGATTGTCAATGGGACACAA+TGG + Chr5:14291225-14291244 MsG0580025141.01.T01:intron 45.0%
TCGGTGATACGCAGATATAG+AGG + Chr5:14291544-14291563 MsG0580025141.01.T01:intron 45.0%
TGATGACTCCACCAGATTAG+AGG + Chr5:14290789-14290808 MsG0580025141.01.T01:CDS 45.0%
TGCAAGTCCAAAACAAGCAG+CGG - Chr5:14291859-14291878 None:intergenic 45.0%
TGGCCTTCTGCTGTAATTCT+GGG + Chr5:14290569-14290588 MsG0580025141.01.T01:CDS 45.0%
TGTCTCCCGCCAAAGAAAAT+GGG - Chr5:14290314-14290333 None:intergenic 45.0%
TTCAAGGCTTCTCAGCTAAG+TGG + Chr5:14292591-14292610 MsG0580025141.01.T01:CDS 45.0%
TTGAAGCAGGAATGTCACAG+TGG - Chr5:14292321-14292340 None:intergenic 45.0%
! AGCCATGTAACCTTTTGCAG+TGG + Chr5:14292486-14292505 MsG0580025141.01.T01:intron 45.0%
! ATTTTCTTTGGCGGGAGACA+TGG + Chr5:14290314-14290333 MsG0580025141.01.T01:CDS 45.0%
! CGCCAAAGAAAATGGGGTTT+TGG - Chr5:14290307-14290326 None:intergenic 45.0%
! GCCATGTAACCTTTTGCAGT+GGG + Chr5:14292487-14292506 MsG0580025141.01.T01:intron 45.0%
! GGCCAAAACCCCATTTTCTT+TGG + Chr5:14290302-14290321 MsG0580025141.01.T01:CDS 45.0%
! TGGAACTTGCTTACCTGGTT+TGG + Chr5:14290732-14290751 MsG0580025141.01.T01:CDS 45.0%
!! ATGTTTGTGTAGCTTGGTGC+TGG + Chr5:14290712-14290731 MsG0580025141.01.T01:intron 45.0%
!! CAACAAAAGCACCGATTCTC+AGG + Chr5:14290605-14290624 MsG0580025141.01.T01:CDS 45.0%
!! TTGCTTACCTGGTTTGGTTG+CGG + Chr5:14290738-14290757 MsG0580025141.01.T01:CDS 45.0%
AAGGTGATGCCCACTGCAAA+AGG - Chr5:14292499-14292518 None:intergenic 50.0%
AGCTGAGAAGCCTTGAAGGA+TGG - Chr5:14292588-14292607 None:intergenic 50.0%
AGGACTGACATGGGGAGTTT+GGG + Chr5:14292126-14292145 MsG0580025141.01.T01:CDS 50.0%
ATCCTCGCTCATAGTCTGTG+TGG - Chr5:14290534-14290553 None:intergenic 50.0%
CTCAGGAGCTAACGTTGTTG+AGG + Chr5:14290622-14290641 MsG0580025141.01.T01:CDS 50.0%
GAGAAGCCTTGAAGGATGGT+AGG - Chr5:14292584-14292603 None:intergenic 50.0%
GCCCACTGCAAAAGGTTACA+TGG - Chr5:14292491-14292510 None:intergenic 50.0%
GGAATGTCACAGTGGCAAAG+AGG - Chr5:14292313-14292332 None:intergenic 50.0%
GTCTCCCGCCAAAGAAAATG+GGG - Chr5:14290313-14290332 None:intergenic 50.0%
GTGGCCTTCTGCTGTAATTC+TGG + Chr5:14290568-14290587 MsG0580025141.01.T01:CDS 50.0%
GTTGTGTACGATGCCTGTGT+TGG - Chr5:14291406-14291425 None:intergenic 50.0%
TAGGACTGACATGGGGAGTT+TGG + Chr5:14292125-14292144 MsG0580025141.01.T01:CDS 50.0%
TCGCCCAGAATTACAGCAGA+AGG - Chr5:14290575-14290594 None:intergenic 50.0%
TTCCACACAGACTATGAGCG+AGG + Chr5:14290529-14290548 MsG0580025141.01.T01:intron 50.0%
! AAGGTGCTAGGACTGACATG+GGG + Chr5:14292118-14292137 MsG0580025141.01.T01:intron 50.0%
! ACTTTTGCCGCAACCAAACC+AGG - Chr5:14290748-14290767 None:intergenic 50.0%
! GGTTTGGTTGCGGCAAAAGT+TGG + Chr5:14290748-14290767 MsG0580025141.01.T01:CDS 50.0%
!! GAAGGTGCTAGGACTGACAT+GGG + Chr5:14292117-14292136 MsG0580025141.01.T01:intron 50.0%
!! GGCTTCTTTCTGAAGGTGCT+AGG + Chr5:14292106-14292125 MsG0580025141.01.T01:intron 50.0%
!! TGAAGGTGCTAGGACTGACA+TGG + Chr5:14292116-14292135 MsG0580025141.01.T01:intron 50.0%
!!! GCTGCTTGTTTTGGACTTGC+AGG + Chr5:14291858-14291877 MsG0580025141.01.T01:intron 50.0%
! GGTGCTGGAACTTGCTTACC+TGG + Chr5:14290727-14290746 MsG0580025141.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 14290270 14292662 14290270 ID=MsG0580025141.01;Name=MsG0580025141.01
Chr5 mRNA 14290270 14292662 14290270 ID=MsG0580025141.01.T01;Parent=MsG0580025141.01;Name=MsG0580025141.01.T01;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|7|0|254
Chr5 exon 14290270 14290455 14290270 ID=MsG0580025141.01.T01:exon:20574;Parent=MsG0580025141.01.T01
Chr5 exon 14290539 14290643 14290539 ID=MsG0580025141.01.T01:exon:20575;Parent=MsG0580025141.01.T01
Chr5 exon 14290724 14290810 14290724 ID=MsG0580025141.01.T01:exon:20576;Parent=MsG0580025141.01.T01
Chr5 exon 14291880 14291930 14291880 ID=MsG0580025141.01.T01:exon:20577;Parent=MsG0580025141.01.T01
Chr5 exon 14292121 14292214 14292121 ID=MsG0580025141.01.T01:exon:20578;Parent=MsG0580025141.01.T01
Chr5 exon 14292300 14292384 14292300 ID=MsG0580025141.01.T01:exon:20579;Parent=MsG0580025141.01.T01
Chr5 exon 14292506 14292662 14292506 ID=MsG0580025141.01.T01:exon:20580;Parent=MsG0580025141.01.T01
Chr5 CDS 14290270 14290455 14290270 ID=MsG0580025141.01.T01:cds;Parent=MsG0580025141.01.T01
Chr5 CDS 14290539 14290643 14290539 ID=MsG0580025141.01.T01:cds;Parent=MsG0580025141.01.T01
Chr5 CDS 14290724 14290810 14290724 ID=MsG0580025141.01.T01:cds;Parent=MsG0580025141.01.T01
Chr5 CDS 14291880 14291930 14291880 ID=MsG0580025141.01.T01:cds;Parent=MsG0580025141.01.T01
Chr5 CDS 14292121 14292214 14292121 ID=MsG0580025141.01.T01:cds;Parent=MsG0580025141.01.T01
Chr5 CDS 14292300 14292384 14292300 ID=MsG0580025141.01.T01:cds;Parent=MsG0580025141.01.T01
Chr5 CDS 14292506 14292662 14292506 ID=MsG0580025141.01.T01:cds;Parent=MsG0580025141.01.T01
Gene Sequence

>MsG0580025141.01.T01

TTGCTCTTGTATATAAGGAGTATATGCAAACGGGCCAAAACCCCATTTTCTTTGGCGGGAGACATGGAAGAAGATGACCGGAACGAAGAATCCGATTCTGATAATACAGCCACTATGACTATGAGCAGAATTTCTCAGCACAATTTCAACGACGACTCTGAAACTCTCACAATTTCCATTATCGAGACTATGAGCGAGGATTACGGCTTATACGTGTGGCCTTCTGCTGTAATTCTGGGCGAGTATATTTGGCAACAAAAGCACCGATTCTCAGGAGCTAACGTTGTTGAGCTTGGTGCTGGAACTTGCTTACCTGGTTTGGTTGCGGCAAAAGTTGGTGCGAATGTCACTCTTACTGATGACTCCACCAGATTAGAGGTGCTTGATAACATGAGAAGAGTTTGCGACTTGAATAAACTTGAGTGCAATGTGCTAGGACTGACATGGGGAGTTTGGGATTCGTCCATATTTGATTTACGACCTACAATTATTCTAGGCGCTGACGTGTTGTATGACTCAAATGCTTTTGATGACCTCTTTGCCACTGTGACATTCCTGCTTCAAAATTCACCTGGATCAATTTTTATAACCTCATACCATAATAGAAGTGGGCATCACCTTATCGAGTTCTTGATGCGAAAATGGGGGTTGAAGTGTCTCAAGCTTCTTGATGGATTTTCTATCCTACCATCCTTCAAGGCTTCTCAGCTAAGTGGAAACATTCAATTGGTGGAGATAGCACTAACATCGAAAGATAATGCTTGA
Protein sequence

>MsG0580025141.01.T01

LLLYIRSICKRAKTPFSLAGDMEEDDRNEESDSDNTATMTMSRISQHNFNDDSETLTISIIETMSEDYGLYVWPSAVILGEYIWQQKHRFSGANVVELGAGTCLPGLVAAKVGANVTLTDDSTRLEVLDNMRRVCDLNKLECNVLGLTWGVWDSSIFDLRPTIILGADVLYDSNAFDDLFATVTFLLQNSPGSIFITSYHNRSGHHLIEFLMRKWGLKCLKLLDGFSILPSFKASQLSGNIQLVEIALTSKDNA*