AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006096.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006096.01.T01 MTR_1g114300 83.239 352 23 4 1 317 1 351 0.0 577
MsG0180006096.01.T01 MTR_5g008300 31.250 160 99 4 161 313 353 508 6.53e-17 82.0
MsG0180006096.01.T01 MTR_6g079920 31.667 120 76 2 191 307 275 391 1.81e-15 77.4
MsG0180006096.01.T01 MTR_7g091410 31.092 119 78 2 190 305 165 282 4.13e-15 76.3
MsG0180006096.01.T01 MTR_7g091410 31.092 119 78 2 190 305 59 176 4.27e-15 76.3
MsG0180006096.01.T01 MTR_7g091410 31.092 119 78 2 190 305 100 217 4.39e-15 76.3
MsG0180006096.01.T01 MTR_7g091410 31.092 119 78 2 190 305 304 421 6.01e-15 75.9
MsG0180006096.01.T01 MTR_6g079830 30.833 120 77 2 191 307 275 391 8.31e-15 75.5
MsG0180006096.01.T01 MTR_6g079830 21.495 321 230 9 2 312 123 431 1.08e-11 65.9
MsG0180006096.01.T01 MTR_6g079180 29.655 145 95 3 166 307 68 208 1.04e-14 74.3
MsG0180006096.01.T01 MTR_6g079210 29.655 145 95 3 166 307 68 208 1.68e-14 73.9
MsG0180006096.01.T01 MTR_6g077540 34.400 125 73 4 187 307 271 390 3.12e-14 73.6
MsG0180006096.01.T01 MTR_6g078190 25.000 240 157 5 84 307 41 273 3.21e-14 73.6
MsG0180006096.01.T01 MTR_6g478210 30.000 120 78 2 191 307 92 208 5.35e-14 72.4
MsG0180006096.01.T01 MTR_6g079890 30.000 120 78 2 191 307 228 344 6.28e-14 72.4
MsG0180006096.01.T01 MTR_8g107050 30.000 200 127 5 120 313 245 437 7.45e-14 72.4
MsG0180006096.01.T01 MTR_8g107050 32.432 111 71 2 201 307 391 501 8.48e-12 66.2
MsG0180006096.01.T01 MTR_8g107050 30.000 200 127 5 120 313 245 437 8.52e-14 72.4
MsG0180006096.01.T01 MTR_8g107050 32.432 111 71 2 201 307 391 501 8.83e-12 66.2
MsG0180006096.01.T01 MTR_6g079960 30.833 120 77 2 191 307 253 369 1.89e-13 71.2
MsG0180006096.01.T01 MTR_3g053350 27.723 202 131 7 119 311 182 377 1.92e-13 71.2
MsG0180006096.01.T01 MTR_3g053350 26.437 174 115 5 147 313 282 449 5.19e-12 67.0
MsG0180006096.01.T01 MTR_4g068360 26.977 215 133 7 121 317 220 428 1.99e-13 71.2
MsG0180006096.01.T01 MTR_6g069300 33.333 120 74 2 191 307 254 370 4.93e-13 70.1
MsG0180006096.01.T01 MTR_1g108270 27.273 242 156 9 78 312 65 293 5.02e-13 69.7
MsG0180006096.01.T01 MTR_2g035630 30.833 120 77 2 191 307 248 364 1.31e-12 68.6
MsG0180006096.01.T01 MTR_1g112240 29.697 165 106 5 153 312 219 378 1.49e-12 68.6
MsG0180006096.01.T01 MTR_1g112240 24.757 206 114 4 106 308 102 269 2.32e-11 64.7
MsG0180006096.01.T01 MTR_6g069840 30.833 120 77 2 191 307 231 347 1.64e-12 68.2
MsG0180006096.01.T01 MTR_6g069840 30.833 120 77 2 191 307 247 363 1.99e-12 68.2
MsG0180006096.01.T01 MTR_3g115270 23.643 258 183 8 64 313 307 558 4.07e-12 67.4
MsG0180006096.01.T01 MTR_1g095880 29.586 169 115 2 148 313 216 383 4.38e-12 67.4
MsG0180006096.01.T01 MTR_3g448620 29.600 125 82 2 191 312 243 364 5.75e-12 66.6
MsG0180006096.01.T01 MTR_2g036560 25.962 208 140 7 112 312 244 444 6.05e-12 67.0
MsG0180006096.01.T01 MTR_2g036560 26.136 176 118 3 144 313 591 760 5.57e-11 63.9
MsG0180006096.01.T01 MTR_7g076550 31.667 120 77 2 191 307 260 377 6.77e-12 66.6
MsG0180006096.01.T01 MTR_3g061000 30.000 120 78 2 191 307 259 375 8.08e-12 66.2
MsG0180006096.01.T01 MTR_7g012890 28.000 150 101 3 166 312 225 370 9.08e-12 66.2
MsG0180006096.01.T01 MTR_3g045420 29.167 168 105 5 147 307 448 608 1.17e-11 65.9
MsG0180006096.01.T01 MTR_6g078160 29.167 120 79 2 191 307 246 362 1.34e-11 65.5
MsG0180006096.01.T01 MTR_3g033040 25.824 182 127 4 117 294 215 392 1.59e-11 65.1
MsG0180006096.01.T01 MTR_6g079250 30.000 120 78 2 191 307 92 208 1.94e-11 64.7
MsG0180006096.01.T01 MTR_3g033040 29.605 152 100 3 147 294 244 392 2.10e-11 65.1
MsG0180006096.01.T01 MTR_6g078210 27.500 120 81 2 191 307 262 378 2.13e-11 65.1
MsG0180006096.01.T01 MTR_3g105900 28.814 177 110 6 144 312 448 616 2.32e-11 65.1
MsG0180006096.01.T01 MTR_6g068820 30.000 120 78 2 191 307 169 285 3.64e-11 63.9
MsG0180006096.01.T01 MTR_6g478130 36.667 90 54 1 221 307 133 222 3.69e-11 63.9
MsG0180006096.01.T01 MTR_0573s0020 36.782 87 52 1 224 307 1 87 4.21e-11 62.8
MsG0180006096.01.T01 MTR_6g082970 28.276 145 97 3 166 307 25 165 4.32e-11 62.4
MsG0180006096.01.T01 MTR_0654s0010 28.800 125 83 2 191 312 140 261 6.35e-11 63.2
MsG0180006096.01.T01 MTR_6g080210 30.000 120 78 2 191 307 245 361 6.68e-11 63.5
MsG0180006096.01.T01 MTR_1g031720 25.581 172 120 5 146 313 492 659 6.86e-11 63.5
MsG0180006096.01.T01 MTR_0014s0210 30.000 120 78 2 191 307 202 318 7.15e-11 63.2
MsG0180006096.01.T01 MTR_6g065560 30.000 120 78 2 191 307 291 407 7.49e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006096.01.T01 AT3G59040 59.816 326 93 6 26 313 21 346 7.04e-128 377
MsG0180006096.01.T01 AT3G59040 59.816 326 93 6 26 313 28 353 1.39e-127 377
MsG0180006096.01.T01 AT3G18110 27.500 200 129 7 122 313 279 470 7.60e-14 72.8
MsG0180006096.01.T01 AT2G18940 26.590 173 116 5 146 312 250 417 2.02e-13 71.2
MsG0180006096.01.T01 AT2G18940 22.543 173 128 2 144 313 564 733 8.30e-11 63.5
MsG0180006096.01.T01 AT1G31840 28.455 123 82 2 191 310 622 741 3.88e-13 70.5
MsG0180006096.01.T01 AT1G31840 28.455 123 82 2 191 310 651 770 4.23e-13 70.5
MsG0180006096.01.T01 AT3G22470 32.692 104 67 1 212 312 313 416 8.89e-13 69.3
MsG0180006096.01.T01 AT2G31400 27.778 180 117 4 144 316 271 444 1.24e-12 68.9
MsG0180006096.01.T01 AT2G31400 33.654 104 66 1 213 313 443 546 1.31e-12 68.9
MsG0180006096.01.T01 AT5G61400 27.746 173 113 5 147 313 345 511 1.30e-12 68.9
MsG0180006096.01.T01 AT2G31400 33.654 104 66 1 213 313 443 546 1.67e-12 68.6
MsG0180006096.01.T01 AT2G31400 27.778 180 117 4 144 316 271 444 1.70e-12 68.6
MsG0180006096.01.T01 AT3G23020 34.375 128 79 2 191 313 272 399 5.36e-12 67.0
MsG0180006096.01.T01 AT5G02860 26.257 179 119 5 142 313 244 416 5.82e-12 67.0
MsG0180006096.01.T01 AT5G02860 26.257 179 119 5 142 313 244 416 5.82e-12 67.0
MsG0180006096.01.T01 AT5G02860 26.257 179 119 5 142 313 244 416 5.82e-12 67.0
MsG0180006096.01.T01 AT5G02860 26.257 179 119 5 142 313 244 416 5.82e-12 67.0
MsG0180006096.01.T01 AT5G02860 26.257 179 119 5 142 313 244 416 5.82e-12 67.0
MsG0180006096.01.T01 AT3G22670 26.220 164 113 3 152 311 214 373 6.16e-12 66.6
MsG0180006096.01.T01 AT1G18900 27.053 207 133 7 108 307 370 565 6.71e-12 66.6
MsG0180006096.01.T01 AT3G22470 31.579 114 65 2 212 312 313 426 6.77e-12 66.6
MsG0180006096.01.T01 AT1G18900 27.053 207 133 7 108 307 370 565 7.29e-12 66.6
MsG0180006096.01.T01 AT1G18900 27.053 207 133 7 108 307 370 565 7.29e-12 66.6
MsG0180006096.01.T01 AT1G18900 27.053 207 133 7 108 307 370 565 7.29e-12 66.6
MsG0180006096.01.T01 AT1G09680 27.374 179 122 5 142 316 276 450 9.32e-12 66.2
MsG0180006096.01.T01 AT5G12100 25.417 240 161 7 81 313 123 351 1.14e-11 66.2
MsG0180006096.01.T01 AT4G31850 31.624 117 74 2 194 307 909 1022 1.71e-11 65.5
MsG0180006096.01.T01 AT2G41720 29.231 130 87 3 178 304 154 281 1.98e-11 65.1
MsG0180006096.01.T01 AT2G41720 29.231 130 87 3 178 304 286 413 2.27e-11 65.1
MsG0180006096.01.T01 AT2G41720 29.231 130 87 3 178 304 286 413 2.34e-11 65.1
MsG0180006096.01.T01 AT3G13160 24.280 243 139 8 111 313 77 314 2.39e-11 64.7
MsG0180006096.01.T01 AT1G12775 34.483 116 72 2 201 312 319 434 2.60e-11 64.7
MsG0180006096.01.T01 AT1G63230 31.132 106 70 1 210 312 142 247 2.86e-11 63.9
MsG0180006096.01.T01 AT5G39710 24.561 228 158 6 92 312 331 551 3.72e-11 64.3
MsG0180006096.01.T01 AT2G35130 28.261 138 92 3 179 312 323 457 3.86e-11 64.3
MsG0180006096.01.T01 AT1G51965 29.921 127 83 2 190 313 459 582 4.35e-11 64.3
MsG0180006096.01.T01 AT2G35130 28.261 138 92 3 179 312 301 435 4.71e-11 63.9
MsG0180006096.01.T01 AT2G35130 28.261 138 92 3 179 312 298 432 4.97e-11 63.9

Find 72 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCTTCTTCTTCAATTT+TGG 0.021542 1:-100114711 None:intergenic
TTCCTCTGCATGAACTTTCT+TGG 0.150552 1:+100114399 None:intergenic
AACTGCAGGGGAACAATTTA+AGG 0.167330 1:-100112594 MsG0180006096.01.T01:CDS
TTTATGCTTATTACGGCTTA+TGG 0.188864 1:-100113317 MsG0180006096.01.T01:CDS
GCTCAAAACTGGTGGGATTT+TGG 0.211251 1:-100113353 MsG0180006096.01.T01:CDS
GCCTTACTCATCAATGCTTA+TGG 0.220795 1:-100111673 MsG0180006096.01.T01:CDS
TCGCCAGACATTTGCACTTA+TGG 0.277919 1:-100112453 MsG0180006096.01.T01:CDS
GGATTTCTTTATGCTTATTA+CGG 0.298644 1:-100113324 MsG0180006096.01.T01:CDS
TTTAGATTCTTGAATGGCTT+AGG 0.310081 1:-100113376 MsG0180006096.01.T01:intron
ATTTGCACTTATGGCGGAAC+GGG 0.339204 1:-100112444 MsG0180006096.01.T01:CDS
TGTTTGCAGAAGTTGGAGTA+TGG 0.360152 1:-100114480 MsG0180006096.01.T01:intron
CCTTACTCATCAATGCTTAT+GGG 0.369913 1:-100111672 MsG0180006096.01.T01:CDS
CAATGCTTCTTCCTCCCTCC+TGG 0.387064 1:+100111645 None:intergenic
TTTATTATTCTCTCATTCTC+TGG 0.392864 1:+100111582 None:intergenic
TTAGATTCTTGAATGGCTTA+GGG 0.394966 1:-100113375 MsG0180006096.01.T01:intron
GTACCAACAACAAGGTCTTT+AGG 0.395131 1:+100114240 None:intergenic
CCCATAAGCATTGATGAGTA+AGG 0.401110 1:+100111672 None:intergenic
ATTTATATGTATAAGAAGTC+TGG 0.406112 1:-100112491 MsG0180006096.01.T01:CDS
CATGCAGAGGAAGAGGAAAA+TGG 0.407415 1:-100114388 MsG0180006096.01.T01:CDS
TTCATAATTAATTCAACTGC+AGG 0.407757 1:-100112608 MsG0180006096.01.T01:CDS
TCACACTGTCACTTAGGGTT+GGG 0.413889 1:-100114623 MsG0180006096.01.T01:CDS
TCAAAGTCACACTGTCACTT+AGG 0.424355 1:-100114629 MsG0180006096.01.T01:CDS
TGCTGTTTCAGTGCTCAATT+CGG 0.430863 1:-100114286 MsG0180006096.01.T01:CDS
CAAAGTCACACTGTCACTTA+GGG 0.442782 1:-100114628 MsG0180006096.01.T01:CDS
ATTCCTAAAGACCTTGTTGT+TGG 0.447888 1:-100114243 MsG0180006096.01.T01:CDS
AATGGTGCTGAGAAGGTGTT+GGG 0.450592 1:-100113278 MsG0180006096.01.T01:CDS
GTTCTGTTTAGATTCTTGAA+TGG 0.452606 1:-100113382 MsG0180006096.01.T01:intron
AGAAGCATTGGCTGTATTTG+AGG 0.458970 1:-100111632 MsG0180006096.01.T01:CDS
CCGCCATAAGTGCAAATGTC+TGG 0.460147 1:+100112450 None:intergenic
GATATTGAAGGTGATGTGTA+AGG 0.460607 1:-100114433 MsG0180006096.01.T01:CDS
AAGGCATAGCTAACCACGTC+AGG 0.461004 1:+100111691 None:intergenic
GAAAGTTCATGCAGAGGAAG+AGG 0.464628 1:-100114395 MsG0180006096.01.T01:CDS
ATATTGAACATCTTCTGATC+TGG 0.464743 1:+100112518 None:intergenic
ATTACGGCTTATGGAAAGCT+TGG 0.468370 1:-100113308 MsG0180006096.01.T01:CDS
GGAAAGCTTGGAGATTTCAA+TGG 0.476417 1:-100113296 MsG0180006096.01.T01:CDS
AATGGCTTAGGGCTCAAAAC+TGG 0.478825 1:-100113364 MsG0180006096.01.T01:CDS
ATCTTCTGATCTGGTCTCAA+AGG 0.492817 1:+100112527 None:intergenic
AGTTTCAAACATATATGATC+AGG 0.516346 1:-100112360 MsG0180006096.01.T01:intron
AAATGCTTGATGCTGGTGTC+AGG 0.520395 1:-100111609 MsG0180006096.01.T01:CDS
CAGGAGGGAGGAAGAAGCAT+TGG 0.522084 1:-100111644 MsG0180006096.01.T01:CDS
TCAATGCTTATGGGAAAGCC+AGG 0.531118 1:-100111663 MsG0180006096.01.T01:CDS
TCATAATTAATTCAACTGCA+GGG 0.543465 1:-100112607 MsG0180006096.01.T01:CDS
GTCACACTGTCACTTAGGGT+TGG 0.546213 1:-100114624 MsG0180006096.01.T01:CDS
CAATGGTGCTGAGAAGGTGT+TGG 0.547049 1:-100113279 MsG0180006096.01.T01:CDS
GAAGATGAGTGGGATATTGA+AGG 0.550427 1:-100114445 MsG0180006096.01.T01:CDS
ACACTTTACCGTGTTTGAAG+AGG 0.556761 1:+100114581 None:intergenic
ATGAAGTTAATAGATGAGAC+TGG 0.557120 1:-100114312 MsG0180006096.01.T01:CDS
CTTTGCAACCTCTTCAAACA+CGG 0.559880 1:-100114589 MsG0180006096.01.T01:CDS
CATAATTAATTCAACTGCAG+GGG 0.560813 1:-100112606 MsG0180006096.01.T01:CDS
GGCTTAGGGCTCAAAACTGG+TGG 0.562199 1:-100113361 MsG0180006096.01.T01:CDS
CATAGACTGCTATTGAGTGT+TGG 0.564374 1:-100112646 MsG0180006096.01.T01:intron
TTTGAGGAAATGCTTGATGC+TGG 0.566278 1:-100111616 MsG0180006096.01.T01:CDS
CACACTGTCACTTAGGGTTG+GGG 0.566575 1:-100114622 MsG0180006096.01.T01:CDS
TTGTGAATGTGAAGATGAGT+GGG 0.571158 1:-100114455 MsG0180006096.01.T01:CDS
CATTTGCACTTATGGCGGAA+CGG 0.572626 1:-100112445 MsG0180006096.01.T01:CDS
GTCATTCGAAACAAATTACA+AGG 0.580639 1:-100112384 MsG0180006096.01.T01:CDS
GTTGGGCTTGATGAATAAGA+TGG 0.587825 1:-100113261 MsG0180006096.01.T01:intron
AGATTTCAATGGTGCTGAGA+AGG 0.595053 1:-100113285 MsG0180006096.01.T01:CDS
TGCTTATGGGAAAGCCAGGA+GGG 0.602621 1:-100111659 MsG0180006096.01.T01:CDS
AGCTGATCTCAGACCTGACG+TGG 0.608893 1:-100111704 MsG0180006096.01.T01:CDS
ATTGTGAATGTGAAGATGAG+TGG 0.610107 1:-100114456 MsG0180006096.01.T01:CDS
AAAGTGGAACCTTGTTGCTG+AGG 0.618803 1:-100114193 MsG0180006096.01.T01:intron
CCAGACATTTGCACTTATGG+CGG 0.621392 1:-100112450 MsG0180006096.01.T01:CDS
GCTTAGGGCTCAAAACTGGT+GGG 0.625630 1:-100113360 MsG0180006096.01.T01:CDS
ATATTGAAGGTGATGTGTAA+GGG 0.626046 1:-100114432 MsG0180006096.01.T01:CDS
CACCAAGAAAGTTCATGCAG+AGG 0.653956 1:-100114401 MsG0180006096.01.T01:CDS
TTTGCACTTATGGCGGAACG+GGG 0.655328 1:-100112443 MsG0180006096.01.T01:CDS
TCATCAAAGTACCAACAACA+AGG 0.663724 1:+100114232 None:intergenic
TGGAATATACCTCAGCAACA+AGG 0.672754 1:+100114184 None:intergenic
ATGCTTATGGGAAAGCCAGG+AGG 0.673877 1:-100111660 MsG0180006096.01.T01:CDS
GCAGAGGAAGAGGAAAATGG+TGG 0.696780 1:-100114385 MsG0180006096.01.T01:CDS
TTATGGGAAAGCCAGGAGGG+AGG 0.709109 1:-100111656 MsG0180006096.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAATAAATAATATGTA+TGG - Chr1:100112809-100112828 MsG0180006096.01.T01:intron 10.0%
!! AACAAATAAATAATATGTAT+GGG - Chr1:100112810-100112829 MsG0180006096.01.T01:intron 10.0%
!! CATTCAAAAAAAAAAAAATT+AGG + Chr1:100112303-100112322 None:intergenic 10.0%
!! AACTATAGACAATAAATTAA+AGG + Chr1:100114522-100114541 None:intergenic 15.0%
!! TTTGTTTATTTATTATAAGG+TGG + Chr1:100112796-100112815 None:intergenic 15.0%
!!! AATGTTGTATATTCAATTTT+TGG + Chr1:100114072-100114091 None:intergenic 15.0%
!! AATACTTAAAACATTTGTTC+AGG - Chr1:100113186-100113205 MsG0180006096.01.T01:intron 20.0%
!! ATTTATATGTATAAGAAGTC+TGG - Chr1:100113799-100113818 MsG0180006096.01.T01:intron 20.0%
!! CAGATTATTTATTTAATCTG+TGG - Chr1:100114451-100114470 MsG0180006096.01.T01:CDS 20.0%
!! GATTAAATAAATAATCTGTC+AGG + Chr1:100114449-100114468 None:intergenic 20.0%
!! TAACATAACATGTTAACATT+TGG + Chr1:100112326-100112345 None:intergenic 20.0%
!! TTGTCATATATTAATTGATG+CGG + Chr1:100112595-100112614 None:intergenic 20.0%
!! TTTATTTATTATAAGGTGGT+TGG + Chr1:100112792-100112811 None:intergenic 20.0%
!!! TTAACTTTAATTTCTACACT+TGG - Chr1:100113369-100113388 MsG0180006096.01.T01:CDS 20.0%
! AAAAACTATGAACATTGACA+AGG + Chr1:100112398-100112417 None:intergenic 25.0%
! AAAACTATGAACATTGACAA+GGG + Chr1:100112397-100112416 None:intergenic 25.0%
! AAATACAAAGAAAACAGCAT+TGG + Chr1:100112129-100112148 None:intergenic 25.0%
! AGTTTCAAACATATATGATC+AGG - Chr1:100113930-100113949 MsG0180006096.01.T01:intron 25.0%
! CACATGAGAATATATGTTTA+AGG + Chr1:100113413-100113432 None:intergenic 25.0%
! GATTTAAACAACTCAAAAAG+TGG - Chr1:100112081-100112100 MsG0180006096.01.T01:intron 25.0%
! GGATTTCTTTATGCTTATTA+CGG - Chr1:100112966-100112985 MsG0180006096.01.T01:intron 25.0%
! GTAATTATCAAAGGAACATT+AGG + Chr1:100113588-100113607 None:intergenic 25.0%
! TCATAATTAATTCAACTGCA+GGG - Chr1:100113683-100113702 MsG0180006096.01.T01:intron 25.0%
! TTAAAGGAGAACATATATAC+AGG + Chr1:100114506-100114525 None:intergenic 25.0%
! TTATGTGCTATATTGAAAGA+AGG - Chr1:100113451-100113470 MsG0180006096.01.T01:intron 25.0%
! TTCATAATTAATTCAACTGC+AGG - Chr1:100113682-100113701 MsG0180006096.01.T01:intron 25.0%
!! AGTAGGAGTTAATTTTATCT+TGG + Chr1:100113560-100113579 None:intergenic 25.0%
!! GTAGGAGTTAATTTTATCTT+GGG + Chr1:100113559-100113578 None:intergenic 25.0%
AAAATATACGGTTTCACCAT+AGG + Chr1:100113488-100113507 None:intergenic 30.0%
AACTTTCAGTCGAAGTAAAA+TGG - Chr1:100113324-100113343 MsG0180006096.01.T01:CDS 30.0%
AAGCCTAAATTGCTTATTTG+TGG + Chr1:100114317-100114336 None:intergenic 30.0%
AATCTCTGAGTTATGAAACT+TGG - Chr1:100114385-100114404 MsG0180006096.01.T01:CDS 30.0%
AATTGCTTATTTGTGGGAAT+TGG + Chr1:100114310-100114329 None:intergenic 30.0%
AGCCTAAATTGCTTATTTGT+GGG + Chr1:100114316-100114335 None:intergenic 30.0%
ATATACAGGACAAAAACCAA+TGG + Chr1:100114492-100114511 None:intergenic 30.0%
ATATTGAACATCTTCTGATC+TGG + Chr1:100113775-100113794 None:intergenic 30.0%
ATATTGAAGGTGATGTGTAA+GGG - Chr1:100111858-100111877 MsG0180006096.01.T01:intron 30.0%
ATGAAGCTGAACAGAAAAAT+TGG - Chr1:100111946-100111965 MsG0180006096.01.T01:intron 30.0%
ATGAAGTTAATAGATGAGAC+TGG - Chr1:100111978-100111997 MsG0180006096.01.T01:intron 30.0%
CATAATTAATTCAACTGCAG+GGG - Chr1:100113684-100113703 MsG0180006096.01.T01:intron 30.0%
GAAAAAATCCAACTCTATCA+CGG + Chr1:100113993-100114012 None:intergenic 30.0%
GAGTTCAACGTAATTATCAA+AGG + Chr1:100113597-100113616 None:intergenic 30.0%
GTCATTCGAAACAAATTACA+AGG - Chr1:100113906-100113925 MsG0180006096.01.T01:intron 30.0%
GTTCTGTTTAGATTCTTGAA+TGG - Chr1:100112908-100112927 MsG0180006096.01.T01:intron 30.0%
TGTAGCCTGTTGAAAATATA+CGG + Chr1:100113500-100113519 None:intergenic 30.0%
TTAGATTCTTGAATGGCTTA+GGG - Chr1:100112915-100112934 MsG0180006096.01.T01:intron 30.0%
TTCATAGATTCTAACTGACT+AGG - Chr1:100112465-100112484 MsG0180006096.01.T01:CDS 30.0%
TTCCCACAAATAAGCAATTT+AGG - Chr1:100114311-100114330 MsG0180006096.01.T01:CDS 30.0%
TTCGACTGAAAGTTTCTTAT+GGG + Chr1:100113318-100113337 None:intergenic 30.0%
TTTAGATTCTTGAATGGCTT+AGG - Chr1:100112914-100112933 MsG0180006096.01.T01:intron 30.0%
TTTATGCTTATTACGGCTTA+TGG - Chr1:100112973-100112992 MsG0180006096.01.T01:intron 30.0%
TTTATTATAAGGTGGTTGGA+CGG + Chr1:100112788-100112807 None:intergenic 30.0%
! AAACTGTTGCTATTGATGTA+CGG + Chr1:100114146-100114165 None:intergenic 30.0%
! AGCTCTTTGCATCTAAAATT+AGG + Chr1:100114570-100114589 None:intergenic 30.0%
! ATATCTACCTTTTGCGATTT+TGG - Chr1:100113217-100113236 MsG0180006096.01.T01:intron 30.0%
! ATCACTGTTTCTTGTGTATA+AGG + Chr1:100114412-100114431 None:intergenic 30.0%
! TGAAACCGTATATTTTCAAC+AGG - Chr1:100113492-100113511 MsG0180006096.01.T01:intron 30.0%
! TGTTAGTTACTTTACTCGTT+GGG - Chr1:100111757-100111776 MsG0180006096.01.T01:intron 30.0%
! TTGATAATTACGTTGAACTC+AGG - Chr1:100113597-100113616 MsG0180006096.01.T01:intron 30.0%
!! GTATTTTCAAGAGTTTCCAT+TGG - Chr1:100114473-100114492 MsG0180006096.01.T01:CDS 30.0%
!!! GTTAGTTTTTTCTCCTTTCT+AGG - Chr1:100112342-100112361 MsG0180006096.01.T01:intron 30.0%
AACCTTTCAACATGCTAATC+TGG - Chr1:100114340-100114359 MsG0180006096.01.T01:CDS 35.0%
AAGCTGAACAGAAAAATTGG+TGG - Chr1:100111949-100111968 MsG0180006096.01.T01:intron 35.0%
AATCTATGAAGCACAGACTA+TGG + Chr1:100112455-100112474 None:intergenic 35.0%
ACAAGATATCCTACATGAAG+AGG + Chr1:100114205-100114224 None:intergenic 35.0%
ACATTGTCTTTGTATCGTAG+AGG - Chr1:100114261-100114280 MsG0180006096.01.T01:CDS 35.0%
ACTGCTGATGTAAAAAACAC+AGG + Chr1:100112845-100112864 None:intergenic 35.0%
ATGAACATTGACAAGGGTTA+AGG + Chr1:100112391-100112410 None:intergenic 35.0%
ATTGTGAATGTGAAGATGAG+TGG - Chr1:100111834-100111853 MsG0180006096.01.T01:intron 35.0%
CCTTACTCATCAATGCTTAT+GGG - Chr1:100114618-100114637 MsG0180006096.01.T01:CDS 35.0%
CTAGTCTAACATATGAAGAG+TGG - Chr1:100112239-100112258 MsG0180006096.01.T01:intron 35.0%
CTTCGACTGAAAGTTTCTTA+TGG + Chr1:100113319-100113338 None:intergenic 35.0%
GATATTGAAGGTGATGTGTA+AGG - Chr1:100111857-100111876 MsG0180006096.01.T01:intron 35.0%
GCATGTACACCTATTGTATT+AGG - Chr1:100112749-100112768 MsG0180006096.01.T01:intron 35.0%
TAGATTCTAACTGACTAGGA+TGG - Chr1:100112469-100112488 MsG0180006096.01.T01:CDS 35.0%
TCAGGATTTAAGTCCTAGAA+AGG + Chr1:100112358-100112377 None:intergenic 35.0%
TGATCGTTTGGAGGATAATT+TGG - Chr1:100112190-100112209 MsG0180006096.01.T01:intron 35.0%
TTACTGTAGTAAGCATGCAT+AGG + Chr1:100114041-100114060 None:intergenic 35.0%
TTGTGAATGTGAAGATGAGT+GGG - Chr1:100111835-100111854 MsG0180006096.01.T01:intron 35.0%
TTTAATCTGCCTCTTCATGT+AGG - Chr1:100114193-100114212 MsG0180006096.01.T01:intron 35.0%
! ATGCTGAAGCAATTTTTCGT+AGG - Chr1:100113119-100113138 MsG0180006096.01.T01:intron 35.0%
! ATTCCTAAAGACCTTGTTGT+TGG - Chr1:100112047-100112066 MsG0180006096.01.T01:intron 35.0%
! CTTATGGAAGCATATGGAAA+AGG - Chr1:100113083-100113102 MsG0180006096.01.T01:intron 35.0%
! GTGTTAGTTACTTTACTCGT+TGG - Chr1:100111756-100111775 MsG0180006096.01.T01:intron 35.0%
! TCATCAAAGTACCAACAACA+AGG + Chr1:100112061-100112080 None:intergenic 35.0%
!!! GCTTCATAGATTTTAACTGC+CGG - Chr1:100112865-100112884 MsG0180006096.01.T01:intron 35.0%
AACAATAACCACTAGCACCA+AGG + Chr1:100113273-100113292 None:intergenic 40.0%
AACTGCAGGGGAACAATTTA+AGG - Chr1:100113696-100113715 MsG0180006096.01.T01:intron 40.0%
AATAGGTGTACATGCTTCAG+AGG + Chr1:100112744-100112763 None:intergenic 40.0%
ACAATAACCACTAGCACCAA+GGG + Chr1:100113272-100113291 None:intergenic 40.0%
ACACTTTACCGTGTTTGAAG+AGG + Chr1:100111712-100111731 None:intergenic 40.0%
AGGAACATTAGGAGATGAGT+AGG + Chr1:100113577-100113596 None:intergenic 40.0%
AGTGTCTCAAACTGCACTTA+TGG - Chr1:100113067-100113086 MsG0180006096.01.T01:intron 40.0%
ATATGAAGAGTGGACACATG+TGG - Chr1:100112249-100112268 MsG0180006096.01.T01:intron 40.0%
ATCTGATAAGTGAAAGCCGA+AGG + Chr1:100113166-100113185 None:intergenic 40.0%
ATCTTCTGATCTGGTCTCAA+AGG + Chr1:100113766-100113785 None:intergenic 40.0%
ATGGGAACCAAAATCGCAAA+AGG + Chr1:100113227-100113246 None:intergenic 40.0%
ATGTGGAATTAGGCATGTCT+CGG - Chr1:100112266-100112285 MsG0180006096.01.T01:intron 40.0%
ATTACGGCTTATGGAAAGCT+TGG - Chr1:100112982-100113001 MsG0180006096.01.T01:intron 40.0%
ATTGACAAGGGTTAAGGAGT+TGG + Chr1:100112385-100112404 None:intergenic 40.0%
CAAGACACGCCTAATACAAT+AGG + Chr1:100112761-100112780 None:intergenic 40.0%
CACTTTGTGTTTGCAGAAGT+TGG - Chr1:100111803-100111822 MsG0180006096.01.T01:intron 40.0%
CATAGACTGCTATTGAGTGT+TGG - Chr1:100113644-100113663 MsG0180006096.01.T01:intron 40.0%
CCCATCAGTGCAATGTAAAT+GGG + Chr1:100113245-100113264 None:intergenic 40.0%
CTATTGTATTAGGCGTGTCT+TGG - Chr1:100112759-100112778 MsG0180006096.01.T01:intron 40.0%
CTTTGCAACCTCTTCAAACA+CGG - Chr1:100111701-100111720 MsG0180006096.01.T01:CDS 40.0%
GAAGATGAGTGGGATATTGA+AGG - Chr1:100111845-100111864 MsG0180006096.01.T01:intron 40.0%
GAAGGAAAATGAGAGACCTA+TGG - Chr1:100113469-100113488 MsG0180006096.01.T01:intron 40.0%
GACCAGATTAGCATGTTGAA+AGG + Chr1:100114345-100114364 None:intergenic 40.0%
GACTATGGCATGAACACATA+CGG + Chr1:100112440-100112459 None:intergenic 40.0%
GCCTTACTCATCAATGCTTA+TGG - Chr1:100114617-100114636 MsG0180006096.01.T01:CDS 40.0%
GGAAAGCTTGGAGATTTCAA+TGG - Chr1:100112994-100113013 MsG0180006096.01.T01:intron 40.0%
GTACCAACAACAAGGTCTTT+AGG + Chr1:100112053-100112072 None:intergenic 40.0%
GTTGGGCTTGATGAATAAGA+TGG - Chr1:100113029-100113048 MsG0180006096.01.T01:intron 40.0%
TCCCATCAGTGCAATGTAAA+TGG + Chr1:100113246-100113265 None:intergenic 40.0%
TCCCATTTACATTGCACTGA+TGG - Chr1:100113241-100113260 MsG0180006096.01.T01:intron 40.0%
TGGAATATACCTCAGCAACA+AGG + Chr1:100112109-100112128 None:intergenic 40.0%
TGTTTGCAGAAGTTGGAGTA+TGG - Chr1:100111810-100111829 MsG0180006096.01.T01:intron 40.0%
TTCCTCTGCATGAACTTTCT+TGG + Chr1:100111894-100111913 None:intergenic 40.0%
TTGACGTAGCAACACATTGT+TGG - Chr1:100112638-100112657 MsG0180006096.01.T01:CDS 40.0%
TTTCGTAGGATGCAGACATT+CGG - Chr1:100113133-100113152 MsG0180006096.01.T01:intron 40.0%
TTTGAGGAAATGCTTGATGC+TGG - Chr1:100114674-100114693 MsG0180006096.01.T01:five_prime_UTR 40.0%
! ACTGCACTTATGGAAGCATA+TGG - Chr1:100113077-100113096 MsG0180006096.01.T01:intron 40.0%
! AGATTTCAATGGTGCTGAGA+AGG - Chr1:100113005-100113024 MsG0180006096.01.T01:intron 40.0%
! ATGGAAGCATATGGAAAAGG+AGG - Chr1:100113086-100113105 MsG0180006096.01.T01:intron 40.0%
! CAAAGTCACACTGTCACTTA+GGG - Chr1:100111662-100111681 MsG0180006096.01.T01:CDS 40.0%
! CCCATTTACATTGCACTGAT+GGG - Chr1:100113242-100113261 MsG0180006096.01.T01:intron 40.0%
! GCAGTTTGAGACACTACATT+TGG + Chr1:100113062-100113081 None:intergenic 40.0%
! TCAAAGTCACACTGTCACTT+AGG - Chr1:100111661-100111680 MsG0180006096.01.T01:CDS 40.0%
!! AGAAGCATTGGCTGTATTTG+AGG - Chr1:100114658-100114677 MsG0180006096.01.T01:exon 40.0%
!! CCCATAAGCATTGATGAGTA+AGG + Chr1:100114621-100114640 None:intergenic 40.0%
!! TAGCAACAGTTTTTGAGCTC+TGG - Chr1:100114154-100114173 MsG0180006096.01.T01:intron 40.0%
!! TGCTGTTTCAGTGCTCAATT+CGG - Chr1:100112004-100112023 MsG0180006096.01.T01:intron 40.0%
!!! CATAGATTTTAACTGCCGGT+CGG - Chr1:100112869-100112888 MsG0180006096.01.T01:intron 40.0%
AAAGTGGAACCTTGTTGCTG+AGG - Chr1:100112097-100112116 MsG0180006096.01.T01:intron 45.0%
AAATGCTTGATGCTGGTGTC+AGG - Chr1:100114681-100114700 MsG0180006096.01.T01:five_prime_UTR 45.0%
AAGTGAAAGCCGAAGGTTCA+GGG + Chr1:100113159-100113178 None:intergenic 45.0%
AATGGCTTAGGGCTCAAAAC+TGG - Chr1:100112926-100112945 MsG0180006096.01.T01:intron 45.0%
ACAACCACATAACAACCGAC+CGG + Chr1:100112887-100112906 None:intergenic 45.0%
CACAGAATCCGTGATAGAGT+TGG - Chr1:100113982-100114001 MsG0180006096.01.T01:intron 45.0%
CACCAAGAAAGTTCATGCAG+AGG - Chr1:100111889-100111908 MsG0180006096.01.T01:intron 45.0%
CATGCAGAGGAAGAGGAAAA+TGG - Chr1:100111902-100111921 MsG0180006096.01.T01:intron 45.0%
CCAGACATTTGCACTTATGG+CGG - Chr1:100113840-100113859 MsG0180006096.01.T01:intron 45.0%
GAAAGTTCATGCAGAGGAAG+AGG - Chr1:100111895-100111914 MsG0180006096.01.T01:intron 45.0%
GAGTGGACACATGTGGAATT+AGG - Chr1:100112256-100112275 MsG0180006096.01.T01:intron 45.0%
GATGGCGTGTGATTGTTTCA+AGG - Chr1:100112487-100112506 MsG0180006096.01.T01:CDS 45.0%
TAAGTGAAAGCCGAAGGTTC+AGG + Chr1:100113160-100113179 None:intergenic 45.0%
TCAATGCTTATGGGAAAGCC+AGG - Chr1:100114627-100114646 MsG0180006096.01.T01:CDS 45.0%
TCGCCAGACATTTGCACTTA+TGG - Chr1:100113837-100113856 MsG0180006096.01.T01:intron 45.0%
TTGATGCGGAAACACGTTGT+TGG + Chr1:100112581-100112600 None:intergenic 45.0%
! ATTTGCACTTATGGCGGAAC+GGG - Chr1:100113846-100113865 MsG0180006096.01.T01:intron 45.0%
! CATTTGCACTTATGGCGGAA+CGG - Chr1:100113845-100113864 MsG0180006096.01.T01:intron 45.0%
! GCTCAAAACTGGTGGGATTT+TGG - Chr1:100112937-100112956 MsG0180006096.01.T01:intron 45.0%
! TCACACTGTCACTTAGGGTT+GGG - Chr1:100111667-100111686 MsG0180006096.01.T01:CDS 45.0%
!! AATGGTGCTGAGAAGGTGTT+GGG - Chr1:100113012-100113031 MsG0180006096.01.T01:intron 45.0%
!! TTATTTGTTTATTTATTATA+AGG + Chr1:100112799-100112818 None:intergenic 5.0%
AAGGCATAGCTAACCACGTC+AGG + Chr1:100114602-100114621 None:intergenic 50.0%
ATGCTTATGGGAAAGCCAGG+AGG - Chr1:100114630-100114649 MsG0180006096.01.T01:CDS 50.0%
CCGCCATAAGTGCAAATGTC+TGG + Chr1:100113843-100113862 None:intergenic 50.0%
GACAAGGGTTAAGGAGTTGG+AGG + Chr1:100112382-100112401 None:intergenic 50.0%
GCAGAGGAAGAGGAAAATGG+TGG - Chr1:100111905-100111924 MsG0180006096.01.T01:intron 50.0%
GCTTAGGGCTCAAAACTGGT+GGG - Chr1:100112930-100112949 MsG0180006096.01.T01:intron 50.0%
GGTTAAGGAGTTGGAGGTTC+AGG + Chr1:100112376-100112395 None:intergenic 50.0%
GTTGTGCGTGTGTGATCGTT+TGG - Chr1:100112178-100112197 MsG0180006096.01.T01:intron 50.0%
TGCTTATGGGAAAGCCAGGA+GGG - Chr1:100114631-100114650 MsG0180006096.01.T01:CDS 50.0%
! CAATGGTGCTGAGAAGGTGT+TGG - Chr1:100113011-100113030 MsG0180006096.01.T01:intron 50.0%
! CACACTGTCACTTAGGGTTG+GGG - Chr1:100111668-100111687 MsG0180006096.01.T01:CDS 50.0%
! GTCACACTGTCACTTAGGGT+TGG - Chr1:100111666-100111685 MsG0180006096.01.T01:CDS 50.0%
! TGCACTGATGGGATTACCCT+TGG - Chr1:100113253-100113272 MsG0180006096.01.T01:intron 50.0%
! TTTGCACTTATGGCGGAACG+GGG - Chr1:100113847-100113866 MsG0180006096.01.T01:intron 50.0%
!! CTGGTGGGATTTTGGCAAGA+TGG - Chr1:100112945-100112964 MsG0180006096.01.T01:intron 50.0%
ACTGCCGGTCGGTTGTTATG+TGG - Chr1:100112880-100112899 MsG0180006096.01.T01:intron 55.0%
AGCTGATCTCAGACCTGACG+TGG - Chr1:100114586-100114605 MsG0180006096.01.T01:intron 55.0%
CAATGCTTCTTCCTCCCTCC+TGG + Chr1:100114648-100114667 None:intergenic 55.0%
GACATTCGGCCCTGAACCTT+CGG - Chr1:100113147-100113166 MsG0180006096.01.T01:intron 55.0%
GGCTTAGGGCTCAAAACTGG+TGG - Chr1:100112929-100112948 MsG0180006096.01.T01:intron 55.0%
GTGCGTGTGTGATCGTTTGG+AGG - Chr1:100112181-100112200 MsG0180006096.01.T01:intron 55.0%
TTATGGGAAAGCCAGGAGGG+AGG - Chr1:100114634-100114653 MsG0180006096.01.T01:CDS 55.0%
! CAGGAGGGAGGAAGAAGCAT+TGG - Chr1:100114646-100114665 MsG0180006096.01.T01:CDS 55.0%
!! GGGATTACCCTTGGTGCTAG+TGG - Chr1:100113262-100113281 MsG0180006096.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100111594 100114718 100111594 ID=MsG0180006096.01;Name=MsG0180006096.01
Chr1 mRNA 100111594 100114718 100111594 ID=MsG0180006096.01.T01;Parent=MsG0180006096.01;Name=MsG0180006096.01.T01;_AED=0.46;_eAED=0.46;_QI=52|0.75|0.4|1|0.75|0.8|5|0|317
Chr1 exon 100111594 100111734 100111594 ID=MsG0180006096.01.T01:exon:12704;Parent=MsG0180006096.01.T01
Chr1 exon 100112361 100112663 100112361 ID=MsG0180006096.01.T01:exon:12703;Parent=MsG0180006096.01.T01
Chr1 exon 100113262 100113393 100113262 ID=MsG0180006096.01.T01:exon:12702;Parent=MsG0180006096.01.T01
Chr1 exon 100114194 100114493 100114194 ID=MsG0180006096.01.T01:exon:12701;Parent=MsG0180006096.01.T01
Chr1 exon 100114589 100114718 100114589 ID=MsG0180006096.01.T01:exon:12700;Parent=MsG0180006096.01.T01
Chr1 five_prime_UTR 100114667 100114718 100114667 ID=MsG0180006096.01.T01:five_prime_utr;Parent=MsG0180006096.01.T01
Chr1 CDS 100114589 100114666 100114589 ID=MsG0180006096.01.T01:cds;Parent=MsG0180006096.01.T01
Chr1 CDS 100114194 100114493 100114194 ID=MsG0180006096.01.T01:cds;Parent=MsG0180006096.01.T01
Chr1 CDS 100113262 100113393 100113262 ID=MsG0180006096.01.T01:cds;Parent=MsG0180006096.01.T01
Chr1 CDS 100112361 100112663 100112361 ID=MsG0180006096.01.T01:cds;Parent=MsG0180006096.01.T01
Chr1 CDS 100111594 100111734 100111594 ID=MsG0180006096.01.T01:cds;Parent=MsG0180006096.01.T01
Gene Sequence

>MsG0180006096.01.T01

ATGTGTAGTCTCATTTCAAAGTCACACTGTCACTTAGGGTTGGGGCAGCTATTCTCTTTGCAACCTCTTCAAACACGGAAGTTGGAGTATGGAATTGTGAATGTGAAGATGAGTGGGATATTGAAGGTGATGTGTAAGGGTATGTTGACACCAAGAAAGTTCATGCAGAGGAAGAGGAAAATGGTGGTTTTCAAAGATGCTGCTGATGAAGCTGAACAGAAAAATTGGTGGAGACTTATGAAGTTAATAGATGAGACTGGTTCTGCTGTTTCAGTGCTCAATTCGGAGAAGATGAAAAATCAAACTATTCCTAAAGACCTTGTTGTTGGTACTTTGATGAGATTTAAACAACTCAAAAAGTGGAACCTTGTTGCTGAGATTCTTGAATGGCTTAGGGCTCAAAACTGGTGGGATTTTGGCAAGATGGATTTCTTTATGCTTATTACGGCTTATGGAAAGCTTGGAGATTTCAATGGTGCTGAGAAGGTGTTGGGCTTGATGAATAAGATGACTGCTATTGAGTGTTGGAATTTCAATTTTGCATTCATAATTAATTCAACTGCAGGGGAACAATTTAAGGAAGCTGAAGAAGTATTTGACAAGCTACTGAATGATGAAAAGTCACCTTTGAGACCAGATCAGAAGATGTTCAATATGATGATTTATATGTATAAGAAGTCTGGAAGTCATGAAAAAGCTCGCCAGACATTTGCACTTATGGCGGAACGGGGAATGAAAAAAACTACAGTAACATATAATAGCTTGATGTCATTCGAAACAAATTACAAGGAAGTTTCAAACATATATGATCAGATGCAAAGAGCTGATCTCAGACCTGACGTGGTTAGCTATGCCTTACTCATCAATGCTTATGGGAAAGCCAGGAGGGAGGAAGAAGCATTGGCTGTATTTGAGGAAATGCTTGATGCTGGTGTCAGGTATGCCAGAGAATGA

Protein sequence

>MsG0180006096.01.T01

MCSLISKSHCHLGLGQLFSLQPLQTRKLEYGIVNVKMSGILKVMCKGMLTPRKFMQRKRKMVVFKDAADEAEQKNWWRLMKLIDETGSAVSVLNSEKMKNQTIPKDLVVGTLMRFKQLKKWNLVAEILEWLRAQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKMTAIECWNFNFAFIINSTAGEQFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSHEKARQTFALMAERGMKKTTVTYNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRYARE*