Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025224.01.T01 | XP_024639420.1 | 89.786 | 421 | 25 | 2 | 1 | 403 | 1 | 421 | 0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025224.01.T01 | Q9FKY4 | 50.594 | 421 | 163 | 5 | 1 | 402 | 1 | 395 | 1.94E-140 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025224.01.T01 | G7K1C1 | 86.936 | 421 | 37 | 2 | 1 | 403 | 1 | 421 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048912.01 | MsG0580025224.01 | 0.804808 | 1.808743e-49 | 9.415913e-47 |
| MsG0180001880.01 | MsG0580025224.01 | 0.813018 | 3.164670e-51 | 2.043199e-48 |
| MsG0380013471.01 | MsG0580025224.01 | 0.804412 | 2.187548e-49 | 1.127113e-46 |
| MsG0580025224.01 | MsG0880042035.01 | 0.800723 | 1.260884e-48 | 5.913471e-46 |
| MsG0380016740.01 | MsG0580025224.01 | 0.802374 | 5.781714e-49 | 2.827743e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580025225.01 | MsG0580025224.01 | PPI |
| MsG0580025224.01 | MsG0580025225.01 | PPI |
| MsG0580025224.01 | MsG0580025225.01 | PPI |
| MsG0580025224.01 | MsG0880045520.01 | PPI |
| MsG0580025225.01 | MsG0580025224.01 | PPI |
| MsG0880045520.01 | MsG0580025224.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025224.01.T01 | MTR_5g024640 | 86.936 | 421 | 37 | 2 | 1 | 403 | 1 | 421 | 0.0 | 730 |
| MsG0580025224.01.T01 | MTR_5g024660 | 83.571 | 420 | 51 | 2 | 1 | 402 | 1 | 420 | 0.0 | 704 |
| MsG0580025224.01.T01 | MTR_5g024640 | 86.280 | 379 | 34 | 2 | 1 | 361 | 1 | 379 | 0.0 | 649 |
| MsG0580025224.01.T01 | MTR_5g024520 | 77.171 | 403 | 44 | 2 | 1 | 403 | 1 | 355 | 0.0 | 605 |
| MsG0580025224.01.T01 | MTR_5g024560 | 90.000 | 280 | 25 | 1 | 124 | 403 | 24 | 300 | 0.0 | 512 |
| MsG0580025224.01.T01 | MTR_5g024640 | 84.000 | 300 | 30 | 2 | 1 | 282 | 1 | 300 | 7.57e-179 | 500 |
| MsG0580025224.01.T01 | MTR_8g073160 | 54.286 | 420 | 133 | 5 | 1 | 402 | 1 | 379 | 8.35e-152 | 434 |
| MsG0580025224.01.T01 | MTR_5g024970 | 38.747 | 431 | 221 | 7 | 1 | 402 | 1 | 417 | 3.56e-105 | 317 |
| MsG0580025224.01.T01 | MTR_5g024970 | 36.681 | 458 | 220 | 8 | 1 | 402 | 1 | 444 | 9.14e-100 | 304 |
| MsG0580025224.01.T01 | MTR_8g072560 | 38.979 | 431 | 205 | 8 | 1 | 401 | 1 | 403 | 1.39e-99 | 302 |
| MsG0580025224.01.T01 | MTR_5g024970 | 40.173 | 346 | 184 | 5 | 67 | 402 | 21 | 353 | 2.47e-89 | 274 |
| MsG0580025224.01.T01 | MTR_5g024970 | 36.735 | 392 | 205 | 7 | 1 | 363 | 1 | 378 | 3.76e-85 | 264 |
| MsG0580025224.01.T01 | MTR_5g024580 | 78.916 | 166 | 17 | 2 | 1 | 148 | 1 | 166 | 1.15e-81 | 248 |
| MsG0580025224.01.T01 | MTR_8g006780 | 36.493 | 422 | 234 | 6 | 1 | 401 | 1 | 409 | 1.47e-79 | 251 |
| MsG0580025224.01.T01 | MTR_8g006775 | 33.176 | 425 | 250 | 8 | 1 | 401 | 1 | 415 | 1.22e-76 | 243 |
| MsG0580025224.01.T01 | MTR_5g024970 | 35.258 | 329 | 170 | 7 | 1 | 300 | 1 | 315 | 9.49e-63 | 204 |
| MsG0580025224.01.T01 | MTR_5g024970 | 34.405 | 311 | 161 | 7 | 1 | 282 | 1 | 297 | 1.77e-55 | 186 |
| MsG0580025224.01.T01 | MTR_7g074190 | 29.227 | 414 | 256 | 7 | 7 | 401 | 26 | 421 | 1.24e-44 | 160 |
| MsG0580025224.01.T01 | MTR_5g024970 | 34.959 | 246 | 119 | 6 | 1 | 219 | 1 | 232 | 1.01e-43 | 153 |
| MsG0580025224.01.T01 | MTR_5g024970 | 32.740 | 281 | 153 | 7 | 1 | 259 | 1 | 267 | 1.45e-43 | 153 |
| MsG0580025224.01.T01 | MTR_5g054950 | 25.000 | 440 | 283 | 10 | 7 | 403 | 17 | 452 | 1.16e-39 | 147 |
| MsG0580025224.01.T01 | MTR_5g024530 | 94.286 | 70 | 4 | 0 | 1 | 70 | 1 | 70 | 1.89e-37 | 133 |
| MsG0580025224.01.T01 | MTR_1g108390 | 22.523 | 444 | 294 | 8 | 7 | 403 | 19 | 459 | 7.96e-35 | 134 |
| MsG0580025224.01.T01 | MTR_8g006780 | 33.188 | 229 | 126 | 5 | 1 | 210 | 1 | 221 | 2.27e-34 | 130 |
| MsG0580025224.01.T01 | MTR_8g006780 | 43.243 | 185 | 100 | 2 | 219 | 401 | 158 | 339 | 2.81e-28 | 114 |
| MsG0580025224.01.T01 | MTR_5g024960 | 53.846 | 104 | 48 | 0 | 299 | 402 | 51 | 154 | 9.77e-32 | 118 |
| MsG0580025224.01.T01 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 8.82e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025224.01.T01 | AT5G65980 | 50.594 | 421 | 163 | 5 | 1 | 402 | 1 | 395 | 1.98e-141 | 409 |
| MsG0580025224.01.T01 | AT2G17500 | 48.456 | 421 | 171 | 6 | 1 | 401 | 1 | 395 | 3.36e-139 | 403 |
| MsG0580025224.01.T01 | AT2G17500 | 48.456 | 421 | 171 | 6 | 1 | 401 | 1 | 395 | 3.36e-139 | 403 |
| MsG0580025224.01.T01 | AT2G17500 | 48.456 | 421 | 171 | 6 | 1 | 401 | 1 | 395 | 3.36e-139 | 403 |
| MsG0580025224.01.T01 | AT2G17500 | 48.456 | 421 | 171 | 6 | 1 | 401 | 1 | 395 | 3.36e-139 | 403 |
| MsG0580025224.01.T01 | AT5G65980 | 49.211 | 380 | 148 | 5 | 1 | 361 | 1 | 354 | 2.13e-121 | 357 |
| MsG0580025224.01.T01 | AT1G76520 | 36.235 | 425 | 211 | 9 | 3 | 402 | 1 | 390 | 1.53e-92 | 284 |
| MsG0580025224.01.T01 | AT1G76520 | 36.235 | 425 | 211 | 9 | 3 | 402 | 1 | 390 | 1.53e-92 | 284 |
| MsG0580025224.01.T01 | AT1G20925 | 34.123 | 422 | 220 | 8 | 1 | 402 | 89 | 472 | 7.91e-85 | 266 |
| MsG0580025224.01.T01 | AT1G76530 | 34.404 | 436 | 231 | 9 | 1 | 402 | 1 | 415 | 7.36e-77 | 244 |
| MsG0580025224.01.T01 | AT1G76530 | 34.404 | 436 | 231 | 9 | 1 | 402 | 1 | 415 | 7.36e-77 | 244 |
| MsG0580025224.01.T01 | AT5G01990 | 29.803 | 406 | 255 | 8 | 7 | 393 | 28 | 422 | 1.35e-50 | 176 |
| MsG0580025224.01.T01 | AT1G71090 | 24.764 | 424 | 269 | 9 | 12 | 391 | 21 | 438 | 7.25e-36 | 137 |
| MsG0580025224.01.T01 | AT1G76530 | 36.310 | 168 | 84 | 4 | 1 | 149 | 1 | 164 | 2.27e-27 | 111 |
Find 80 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGTTTGGTGTCTTTA+TGG | 0.140203 | 5:+15466174 | None:intergenic |
| AAGCAGCTCATTGAGATTTA+AGG | 0.177124 | 5:-15466215 | MsG0580025224.01.T01:CDS |
| CCTTTCTCAGCGCATATTGC+TGG | 0.274602 | 5:+15466572 | None:intergenic |
| GTGCTTTGGATTACTCTAAA+TGG | 0.279594 | 5:+15465595 | None:intergenic |
| CAGCCATAGCTCTCACTTCT+TGG | 0.283765 | 5:-15464903 | MsG0580025224.01.T01:CDS |
| ATTATTGCTGCTTGTTCATC+AGG | 0.302286 | 5:-15466793 | MsG0580025224.01.T01:intron |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5:+15467268 | None:intergenic |
| AGACCTTCCACTTTCAAATT+AGG | 0.311359 | 5:+15466817 | None:intergenic |
| GTCTTACTTGTTAGTGCATT+GGG | 0.316858 | 5:-15467331 | MsG0580025224.01.T01:CDS |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.319565 | 5:-15467320 | MsG0580025224.01.T01:CDS |
| ATCTTGAAGTGAAACACTTT+TGG | 0.323759 | 5:+15467018 | None:intergenic |
| TGGTTAAGGAACTTAATAAT+TGG | 0.328372 | 5:-15465628 | MsG0580025224.01.T01:CDS |
| CAAAGCACTCTTGAATTACT+TGG | 0.330746 | 5:-15465580 | MsG0580025224.01.T01:CDS |
| TCCTCTTTGGCGCGGTTGAA+TGG | 0.337747 | 5:-15465648 | MsG0580025224.01.T01:CDS |
| CTCATATGCATCTTTCTCTA+TGG | 0.347141 | 5:-15466507 | MsG0580025224.01.T01:CDS |
| GTGAAAGCCGCGGCTAATTA+CGG | 0.365243 | 5:-15465317 | MsG0580025224.01.T01:CDS |
| CAAGTAATTCAAGAGTGCTT+TGG | 0.369622 | 5:+15465581 | None:intergenic |
| TTGGCGCGGTTGAATGGTTA+AGG | 0.376725 | 5:-15465642 | MsG0580025224.01.T01:CDS |
| TTTCCTTCAAGATCTTTGTT+TGG | 0.379155 | 5:+15466163 | None:intergenic |
| ACAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5:+15467343 | None:intergenic |
| AAGAAAATCAAAAGCAAAGA+TGG | 0.389103 | 5:-15467398 | MsG0580025224.01.T01:exon |
| ACAATAAACAATCCAATAAC+AGG | 0.393798 | 5:+15465338 | None:intergenic |
| AACTTACCAATACTCATTGC+TGG | 0.425948 | 5:+15465236 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.431551 | 5:+15466545 | None:intergenic |
| TCTTATAATTTGATAAGTAT+AGG | 0.432637 | 5:+15466237 | None:intergenic |
| ACCAATGTATACTGAAACAA+AGG | 0.455002 | 5:+15465278 | None:intergenic |
| AGTCTTACTTGTTAGTGCAT+TGG | 0.460091 | 5:-15467332 | MsG0580025224.01.T01:CDS |
| GTGCTCAGTTATTCTGTTGT+GGG | 0.460284 | 5:-15464938 | MsG0580025224.01.T01:CDS |
| TGTAGATACTCCCTTTCTAA+AGG | 0.462682 | 5:-15466140 | MsG0580025224.01.T01:CDS |
| GTAGATACTCCCTTTCTAAA+GGG | 0.462952 | 5:-15466139 | MsG0580025224.01.T01:CDS |
| GCTGAGAAAGGAGGTCCATT+TGG | 0.463548 | 5:-15466560 | MsG0580025224.01.T01:CDS |
| ATTGCTGGGATAATTACAAT+TGG | 0.467575 | 5:+15466587 | None:intergenic |
| GAACTCACTACAGAAATTGC+TGG | 0.472890 | 5:+15465767 | None:intergenic |
| CACTTCAAGATATGATATCA+TGG | 0.475301 | 5:-15467006 | MsG0580025224.01.T01:intron |
| TGAATCACATACCTTGTTCA+AGG | 0.477557 | 5:+15467252 | None:intergenic |
| CTTGGTCAACATTCCTCTTG+TGG | 0.479125 | 5:-15464885 | MsG0580025224.01.T01:CDS |
| CTTTAATTAACCAGGAAACA+TGG | 0.484143 | 5:-15466618 | MsG0580025224.01.T01:intron |
| TCCTTTGTTTCAGTATACAT+TGG | 0.484161 | 5:-15465279 | MsG0580025224.01.T01:CDS |
| TACTGAAACAAAGGACCCAC+TGG | 0.491887 | 5:+15465287 | None:intergenic |
| CTTTCTCAGCGCATATTGCT+GGG | 0.493209 | 5:+15466573 | None:intergenic |
| ACACCAAACAAAGATCTTGA+AGG | 0.506701 | 5:-15466166 | MsG0580025224.01.T01:CDS |
| AGTGCTCAGTTATTCTGTTG+TGG | 0.513059 | 5:-15464939 | MsG0580025224.01.T01:CDS |
| ATATTTCGATTGTAGCTTGG+TGG | 0.513697 | 5:-15466274 | MsG0580025224.01.T01:intron |
| TCAATCTAATGAATTGAAGA+AGG | 0.519656 | 5:-15465858 | MsG0580025224.01.T01:CDS |
| CTTGGTGGTAACCTCACCGC+TGG | 0.523494 | 5:-15465428 | MsG0580025224.01.T01:CDS |
| CCAGCAATATGCGCTGAGAA+AGG | 0.531441 | 5:-15466572 | MsG0580025224.01.T01:CDS |
| TGGATATTAGTAAAATACTA+AGG | 0.534729 | 5:-15466840 | MsG0580025224.01.T01:CDS |
| ACTAAGGCCTAATTTGAAAG+TGG | 0.545964 | 5:-15466824 | MsG0580025224.01.T01:CDS |
| ATGCCACCAGCAATGAGTAT+TGG | 0.553714 | 5:-15465242 | MsG0580025224.01.T01:intron |
| ACCATTCAACCGCGCCAAAG+AGG | 0.558734 | 5:+15465647 | None:intergenic |
| TTTAATTAACCAGGAAACAT+GGG | 0.559242 | 5:-15466617 | MsG0580025224.01.T01:intron |
| AGGCCTAATTTGAAAGTGGA+AGG | 0.564939 | 5:-15466820 | MsG0580025224.01.T01:CDS |
| GTAAAGTGTTCAGATTAAGC+AGG | 0.569889 | 5:-15467464 | MsG0580025224.01.T01:five_prime_UTR |
| AGAAAATCAAAAGCAAAGAT+GGG | 0.573635 | 5:-15467397 | MsG0580025224.01.T01:exon |
| AAAGCACTCTTGAATTACTT+GGG | 0.574422 | 5:-15465579 | MsG0580025224.01.T01:intron |
| TACTTTGAATTTATTTCTGT+AGG | 0.576922 | 5:+15467484 | None:intergenic |
| AAACTTGAAAATATAAGTGA+AGG | 0.585111 | 5:+15467043 | None:intergenic |
| AGAAAACACCGTGATAGAAG+TGG | 0.591203 | 5:-15466107 | MsG0580025224.01.T01:CDS |
| CAACGGTGCCACTTCTATCA+CGG | 0.595633 | 5:+15466099 | None:intergenic |
| TAATTACGGCTTTCTCCCAG+TGG | 0.598582 | 5:-15465303 | MsG0580025224.01.T01:CDS |
| AATAAGATAATAGCCACAAG+AGG | 0.612170 | 5:+15464872 | None:intergenic |
| ATGATGCAGATGAGTGTCAA+TGG | 0.615768 | 5:+15465383 | None:intergenic |
| AATTACGGCTTTCTCCCAGT+GGG | 0.621145 | 5:-15465302 | MsG0580025224.01.T01:CDS |
| AATTAACCAGGAAACATGGG+AGG | 0.625582 | 5:-15466614 | MsG0580025224.01.T01:intron |
| GATACATTATGTAGGTACAA+TGG | 0.631901 | 5:-15464989 | MsG0580025224.01.T01:intron |
| TCATCTGCATCATCATAACT+CGG | 0.636536 | 5:-15465373 | MsG0580025224.01.T01:CDS |
| CCAAGCAAAAGTGTGATGCA+AGG | 0.640175 | 5:+15465446 | None:intergenic |
| GCAATATGCGCTGAGAAAGG+AGG | 0.652370 | 5:-15466569 | MsG0580025224.01.T01:CDS |
| ACTTGATGATTTCAAGCCAG+CGG | 0.661854 | 5:+15465412 | None:intergenic |
| ATTGTTTATTGTGAAAGCCG+CGG | 0.663100 | 5:-15465327 | MsG0580025224.01.T01:CDS |
| TTTCGGTTTCCTCTTTGGCG+CGG | 0.666266 | 5:-15465656 | MsG0580025224.01.T01:CDS |
| GAGTCTTCAATATAACTCAA+CGG | 0.668737 | 5:+15466082 | None:intergenic |
| CTCACTACAGAAATTGCTGG+TGG | 0.681820 | 5:+15465770 | None:intergenic |
| TTACCAATACTCATTGCTGG+TGG | 0.682899 | 5:+15465239 | None:intergenic |
| ACTGAAACAAAGGACCCACT+GGG | 0.684140 | 5:+15465288 | None:intergenic |
| ATGATTTCAAGCCAGCGGTG+AGG | 0.686628 | 5:+15465417 | None:intergenic |
| ATGGCTCAGCTGTTTGACGT+AGG | 0.688475 | 5:-15464970 | MsG0580025224.01.T01:CDS |
| TGACCAAGAAGTGAGAGCTA+TGG | 0.691891 | 5:+15464900 | None:intergenic |
| GAGAAAGCCGTAATTAGCCG+CGG | 0.706047 | 5:+15465310 | None:intergenic |
| CATATGAGAGTGCATTACTG+TGG | 0.758442 | 5:+15466522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAACTTAATCTAAAA+TGG | - | Chr5:15465673-15465692 | MsG0580025224.01.T01:intron | 15.0% |
| !! | TCTTATAATTTGATAAGTAT+AGG | + | Chr5:15466099-15466118 | None:intergenic | 15.0% |
| !!! | ATTGTTAAATTTGAAACAAA+TGG | + | Chr5:15466637-15466656 | None:intergenic | 15.0% |
| !!! | GTTAAAATTTTCTAATTCAT+CGG | - | Chr5:15466361-15466380 | MsG0580025224.01.T01:intron | 15.0% |
| !!! | TTAAAATTTTCTAATTCATC+GGG | - | Chr5:15466362-15466381 | MsG0580025224.01.T01:intron | 15.0% |
| !! | AAACTTGAAAATATAAGTGA+AGG | + | Chr5:15465293-15465312 | None:intergenic | 20.0% |
| !! | AGTTTAAACAAATAATTGTG+TGG | + | Chr5:15466841-15466860 | None:intergenic | 20.0% |
| !! | CATTAAATTCATACAAAAGA+TGG | + | Chr5:15467188-15467207 | None:intergenic | 20.0% |
| !! | TAGGAACAACAATATAATAT+AGG | + | Chr5:15467308-15467327 | None:intergenic | 20.0% |
| !! | TGGATATTAGTAAAATACTA+AGG | - | Chr5:15465493-15465512 | MsG0580025224.01.T01:intron | 20.0% |
| !!! | AAAAAGTATATAGCATAATC+TGG | + | Chr5:15466305-15466324 | None:intergenic | 20.0% |
| !!! | AAATACCATAATCAGTTTTT+CGG | - | Chr5:15466660-15466679 | MsG0580025224.01.T01:intron | 20.0% |
| !!! | CATCTTTTGTATGAATTTAA+TGG | - | Chr5:15467186-15467205 | MsG0580025224.01.T01:intron | 20.0% |
| !!! | GAAATACTGTTTTGTTTTTT+TGG | - | Chr5:15465230-15465249 | MsG0580025224.01.T01:intron | 20.0% |
| !!! | TAAAATTTTCTAATTCATCG+GGG | - | Chr5:15466363-15466382 | MsG0580025224.01.T01:intron | 20.0% |
| !!! | TGGTTTTTATGAAGAAATTA+AGG | + | Chr5:15466786-15466805 | None:intergenic | 20.0% |
| !!! | TGTAAAAAGTTTTACACTTA+CGG | + | Chr5:15467147-15467166 | None:intergenic | 20.0% |
| !!! | TGTTTATTTCTGATTTATAC+AGG | - | Chr5:15465417-15465436 | MsG0580025224.01.T01:CDS | 20.0% |
| ! | AACTTAATTCTTTGCAGAAA+TGG | - | Chr5:15466857-15466876 | MsG0580025224.01.T01:intron | 25.0% |
| ! | AAGAAAATCAAAAGCAAAGA+TGG | - | Chr5:15464935-15464954 | MsG0580025224.01.T01:CDS | 25.0% |
| ! | AATGTCTTCTATAAGAAGTA+TGG | - | Chr5:15465975-15465994 | MsG0580025224.01.T01:intron | 25.0% |
| ! | ACAATAAACAATCCAATAAC+AGG | + | Chr5:15466998-15467017 | None:intergenic | 25.0% |
| ! | ACATAATATAGCATCAAAGT+TGG | - | Chr5:15465643-15465662 | MsG0580025224.01.T01:CDS | 25.0% |
| ! | AGAAAATCAAAAGCAAAGAT+GGG | - | Chr5:15464936-15464955 | MsG0580025224.01.T01:CDS | 25.0% |
| ! | ATAATATTTCGATTGTAGCT+TGG | - | Chr5:15466056-15466075 | MsG0580025224.01.T01:intron | 25.0% |
| ! | ATATGATATCATGGTACATA+TGG | - | Chr5:15465336-15465355 | MsG0580025224.01.T01:CDS | 25.0% |
| ! | ATTTCGATGATACATTATGT+AGG | - | Chr5:15467336-15467355 | MsG0580025224.01.T01:CDS | 25.0% |
| ! | CAAGAAAGAAAGAAAGAAAA+AGG | + | Chr5:15466591-15466610 | None:intergenic | 25.0% |
| ! | CTTCACATTGAAAATGTATT+TGG | + | Chr5:15465170-15465189 | None:intergenic | 25.0% |
| ! | GAATTATGCTTTAATTAACC+AGG | - | Chr5:15465707-15465726 | MsG0580025224.01.T01:intron | 25.0% |
| ! | TCAATCTAATGAATTGAAGA+AGG | - | Chr5:15466475-15466494 | MsG0580025224.01.T01:intron | 25.0% |
| ! | TGGTTAAGGAACTTAATAAT+TGG | - | Chr5:15466705-15466724 | MsG0580025224.01.T01:intron | 25.0% |
| ! | TTGGAAAATGTTAGCATATT+AGG | - | Chr5:15466332-15466351 | MsG0580025224.01.T01:intron | 25.0% |
| ! | TTTAATTAACCAGGAAACAT+GGG | - | Chr5:15465716-15465735 | MsG0580025224.01.T01:intron | 25.0% |
| !! | CTTATCATTGTCTGAAATAA+AGG | + | Chr5:15466409-15466428 | None:intergenic | 25.0% |
| !!! | ATCATCGAAATTTTGAAGTT+AGG | + | Chr5:15467327-15467346 | None:intergenic | 25.0% |
| !!! | TTATTTCTGATTTATACAGG+TGG | - | Chr5:15465420-15465439 | MsG0580025224.01.T01:CDS | 25.0% |
| AATAAGATAATAGCCACAAG+AGG | + | Chr5:15467464-15467483 | None:intergenic | 30.0% | |
| ACAAGTAAGACTTGAATAAC+TGG | + | Chr5:15464993-15465012 | None:intergenic | 30.0% | |
| ACCAATGTATACTGAAACAA+AGG | + | Chr5:15467058-15467077 | None:intergenic | 30.0% | |
| ATTGCTGGGATAATTACAAT+TGG | + | Chr5:15465749-15465768 | None:intergenic | 30.0% | |
| CACTTCAAGATATGATATCA+TGG | - | Chr5:15465327-15465346 | MsG0580025224.01.T01:CDS | 30.0% | |
| CTTTAATTAACCAGGAAACA+TGG | - | Chr5:15465715-15465734 | MsG0580025224.01.T01:intron | 30.0% | |
| GAAAAGAAGTAGAGACTTTA+AGG | + | Chr5:15466815-15466834 | None:intergenic | 30.0% | |
| GAGTCTTCAATATAACTCAA+CGG | + | Chr5:15466254-15466273 | None:intergenic | 30.0% | |
| GATACATTATGTAGGTACAA+TGG | - | Chr5:15467344-15467363 | MsG0580025224.01.T01:CDS | 30.0% | |
| GTGAAGAGCAAATATTTAAC+AGG | - | Chr5:15465184-15465203 | MsG0580025224.01.T01:intron | 30.0% | |
| TAAAATCCCTCCAATTAAGA+AGG | + | Chr5:15465470-15465489 | None:intergenic | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | Chr5:15465068-15465087 | None:intergenic | 30.0% | |
| TTTCCTTCAAGATCTTTGTT+TGG | + | Chr5:15466173-15466192 | None:intergenic | 30.0% | |
| ! | AAAGATGGTTTGTAATCGAT+CGG | + | Chr5:15467173-15467192 | None:intergenic | 30.0% |
| ! | AAAGCACTCTTGAATTACTT+GGG | - | Chr5:15466754-15466773 | MsG0580025224.01.T01:intron | 30.0% |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | Chr5:15465054-15465073 | MsG0580025224.01.T01:intron | 30.0% |
| ! | ATCTTGAAGTGAAACACTTT+TGG | + | Chr5:15465318-15465337 | None:intergenic | 30.0% |
| ! | TAGAGACTTTAAGGACTATT+TGG | + | Chr5:15466806-15466825 | None:intergenic | 30.0% |
| ! | TCCTTTGTTTCAGTATACAT+TGG | - | Chr5:15467054-15467073 | MsG0580025224.01.T01:CDS | 30.0% |
| ! | TCTCAACTATCTTGATTTTC+AGG | - | Chr5:15466439-15466458 | MsG0580025224.01.T01:intron | 30.0% |
| ! | TTCTTAATTGGAGGGATTTT+AGG | - | Chr5:15465469-15465488 | MsG0580025224.01.T01:intron | 30.0% |
| ! | TTGTCTGAAATAAAGGTTGA+AGG | + | Chr5:15466402-15466421 | None:intergenic | 30.0% |
| ! | TTTTACTGATCCAAGAGTTA+TGG | - | Chr5:15467232-15467251 | MsG0580025224.01.T01:intron | 30.0% |
| ! | TTTTGTACAACTATTGGAAG+TGG | - | Chr5:15464959-15464978 | MsG0580025224.01.T01:CDS | 30.0% |
| !! | ATCTTTGTTTGGTGTCTTTA+TGG | + | Chr5:15466162-15466181 | None:intergenic | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | Chr5:15465070-15465089 | MsG0580025224.01.T01:intron | 30.0% |
| AACTTACCAATACTCATTGC+TGG | + | Chr5:15467100-15467119 | None:intergenic | 35.0% | |
| AAGCAGCTCATTGAGATTTA+AGG | - | Chr5:15466118-15466137 | MsG0580025224.01.T01:CDS | 35.0% | |
| ACACCAAACAAAGATCTTGA+AGG | - | Chr5:15466167-15466186 | MsG0580025224.01.T01:CDS | 35.0% | |
| ACTAAGGCCTAATTTGAAAG+TGG | - | Chr5:15465509-15465528 | MsG0580025224.01.T01:intron | 35.0% | |
| AGACCTTCCACTTTCAAATT+AGG | + | Chr5:15465519-15465538 | None:intergenic | 35.0% | |
| ATATTTCGATTGTAGCTTGG+TGG | - | Chr5:15466059-15466078 | MsG0580025224.01.T01:intron | 35.0% | |
| ATTGTTTATTGTGAAAGCCG+CGG | - | Chr5:15467006-15467025 | MsG0580025224.01.T01:intron | 35.0% | |
| CTCATATGCATCTTTCTCTA+TGG | - | Chr5:15465826-15465845 | MsG0580025224.01.T01:CDS | 35.0% | |
| GAAATAAAGGTTGAAGGACT+AGG | + | Chr5:15466396-15466415 | None:intergenic | 35.0% | |
| GGAAACCGAAAAACTGATTA+TGG | + | Chr5:15466668-15466687 | None:intergenic | 35.0% | |
| GTAGATACTCCCTTTCTAAA+GGG | - | Chr5:15466194-15466213 | MsG0580025224.01.T01:CDS | 35.0% | |
| TCATCTGCATCATCATAACT+CGG | - | Chr5:15466960-15466979 | MsG0580025224.01.T01:intron | 35.0% | |
| TGAATCACATACCTTGTTCA+AGG | + | Chr5:15465084-15465103 | None:intergenic | 35.0% | |
| TGTAGATACTCCCTTTCTAA+AGG | - | Chr5:15466193-15466212 | MsG0580025224.01.T01:CDS | 35.0% | |
| TGTCAATCAACCATAACTCT+TGG | + | Chr5:15467245-15467264 | None:intergenic | 35.0% | |
| TTTATACAGGTGGTTTATGC+CGG | - | Chr5:15465430-15465449 | MsG0580025224.01.T01:CDS | 35.0% | |
| ! | AGTCTTACTTGTTAGTGCAT+TGG | - | Chr5:15465001-15465020 | MsG0580025224.01.T01:intron | 35.0% |
| ! | ATTATTGCTGCTTGTTCATC+AGG | - | Chr5:15465540-15465559 | MsG0580025224.01.T01:intron | 35.0% |
| ! | CAAAGCACTCTTGAATTACT+TGG | - | Chr5:15466753-15466772 | MsG0580025224.01.T01:intron | 35.0% |
| ! | GTAAAGTGTTCAGATTAAGC+AGG | - | Chr5:15464869-15464888 | MsG0580025224.01.T01:exon | 35.0% |
| ! | GTCTTACTTGTTAGTGCATT+GGG | - | Chr5:15465002-15465021 | MsG0580025224.01.T01:intron | 35.0% |
| ! | GTGCTTTGGATTACTCTAAA+TGG | + | Chr5:15466741-15466760 | None:intergenic | 35.0% |
| !! | AGCTTGGTGGTATTTTCATA+TGG | - | Chr5:15466072-15466091 | MsG0580025224.01.T01:CDS | 35.0% |
| !! | CAAGTAATTCAAGAGTGCTT+TGG | + | Chr5:15466755-15466774 | None:intergenic | 35.0% |
| !! | GATGGGTTTTGTACAACTAT+TGG | - | Chr5:15464953-15464972 | MsG0580025224.01.T01:CDS | 35.0% |
| !! | TAATTGGAGGGATTTTAGGA+TGG | - | Chr5:15465473-15465492 | MsG0580025224.01.T01:intron | 35.0% |
| !! | TCGTCTTTTCCCTTTAGAAA+GGG | + | Chr5:15466206-15466225 | None:intergenic | 35.0% |
| !! | TGTTGACTCACCTTCTTAAT+TGG | - | Chr5:15465457-15465476 | MsG0580025224.01.T01:CDS | 35.0% |
| !! | TTCGTCTTTTCCCTTTAGAA+AGG | + | Chr5:15466207-15466226 | None:intergenic | 35.0% |
| AAAGCCAAATCGTAAGACCT+TGG | - | Chr5:15466276-15466295 | MsG0580025224.01.T01:intron | 40.0% | |
| AAGAATACAACCTGCAGAAC+AGG | + | Chr5:15465260-15465279 | None:intergenic | 40.0% | |
| AAGCCAAATCGTAAGACCTT+GGG | - | Chr5:15466277-15466296 | MsG0580025224.01.T01:intron | 40.0% | |
| AATTAACCAGGAAACATGGG+AGG | - | Chr5:15465719-15465738 | MsG0580025224.01.T01:intron | 40.0% | |
| AGAAAACACCGTGATAGAAG+TGG | - | Chr5:15466226-15466245 | MsG0580025224.01.T01:CDS | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+AGG | - | Chr5:15465513-15465532 | MsG0580025224.01.T01:intron | 40.0% | |
| AGTGCTCAGTTATTCTGTTG+TGG | - | Chr5:15467394-15467413 | MsG0580025224.01.T01:exon | 40.0% | |
| ATGATGCAGATGAGTGTCAA+TGG | + | Chr5:15466953-15466972 | None:intergenic | 40.0% | |
| GAACTCACTACAGAAATTGC+TGG | + | Chr5:15466569-15466588 | None:intergenic | 40.0% | |
| GAAGGTGAGTCAACATTAAC+CGG | + | Chr5:15465452-15465471 | None:intergenic | 40.0% | |
| GACTCACCTTCTTAATTGGA+GGG | - | Chr5:15465461-15465480 | MsG0580025224.01.T01:CDS | 40.0% | |
| GTGCTCAGTTATTCTGTTGT+GGG | - | Chr5:15467395-15467414 | MsG0580025224.01.T01:exon | 40.0% | |
| TGACTCACCTTCTTAATTGG+AGG | - | Chr5:15465460-15465479 | MsG0580025224.01.T01:CDS | 40.0% | |
| TTACCAATACTCATTGCTGG+TGG | + | Chr5:15467097-15467116 | None:intergenic | 40.0% | |
| ! | ACTTGATGATTTCAAGCCAG+CGG | + | Chr5:15466924-15466943 | None:intergenic | 40.0% |
| ! | CATATGAGAGTGCATTACTG+TGG | + | Chr5:15465814-15465833 | None:intergenic | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | Chr5:15466983-15467002 | MsG0580025224.01.T01:intron | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+TGG | - | Chr5:15466672-15466691 | MsG0580025224.01.T01:intron | 40.0% |
| !! | GACATTTCTAGTGTCTGACA+TGG | + | Chr5:15465961-15465980 | None:intergenic | 40.0% |
| !!! | TTTTGGTTTACCTGTTCTGC+AGG | - | Chr5:15465247-15465266 | MsG0580025224.01.T01:CDS | 40.0% |
| AATTACGGCTTTCTCCCAGT+GGG | - | Chr5:15467031-15467050 | MsG0580025224.01.T01:CDS | 45.0% | |
| ACTGAAACAAAGGACCCACT+GGG | + | Chr5:15467048-15467067 | None:intergenic | 45.0% | |
| ATGCCACCAGCAATGAGTAT+TGG | - | Chr5:15467091-15467110 | MsG0580025224.01.T01:intron | 45.0% | |
| CTCACTACAGAAATTGCTGG+TGG | + | Chr5:15466566-15466585 | None:intergenic | 45.0% | |
| CTTGGTCAACATTCCTCTTG+TGG | - | Chr5:15467448-15467467 | MsG0580025224.01.T01:five_prime_UTR | 45.0% | |
| CTTTCTCAGCGCATATTGCT+GGG | + | Chr5:15465763-15465782 | None:intergenic | 45.0% | |
| TAATTACGGCTTTCTCCCAG+TGG | - | Chr5:15467030-15467049 | MsG0580025224.01.T01:CDS | 45.0% | |
| TACTGAAACAAAGGACCCAC+TGG | + | Chr5:15467049-15467068 | None:intergenic | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | Chr5:15465013-15465032 | MsG0580025224.01.T01:intron | 45.0% | |
| TGACCAAGAAGTGAGAGCTA+TGG | + | Chr5:15467436-15467455 | None:intergenic | 45.0% | |
| ! | ATAGCATAATCTGGCTCCCA+AGG | + | Chr5:15466296-15466315 | None:intergenic | 45.0% |
| ! | CCAAGCAAAAGTGTGATGCA+AGG | + | Chr5:15466890-15466909 | None:intergenic | 45.0% |
| ! | CCTTGCATCACACTTTTGCT+TGG | - | Chr5:15466887-15466906 | MsG0580025224.01.T01:intron | 45.0% |
| ! | TGCATCACACTTTTGCTTGG+TGG | - | Chr5:15466890-15466909 | MsG0580025224.01.T01:intron | 45.0% |
| !!! | ATATTTCTAAAATATATTTT+TGG | - | Chr5:15465572-15465591 | MsG0580025224.01.T01:intron | 5.0% |
| !!! | ATTAATACTATATTTAATTT+AGG | + | Chr5:15465108-15465127 | None:intergenic | 5.0% |
| !!! | TATATACTTTTTTTTTTAAT+TGG | - | Chr5:15466313-15466332 | MsG0580025224.01.T01:intron | 5.0% |
| ATGATTTCAAGCCAGCGGTG+AGG | + | Chr5:15466919-15466938 | None:intergenic | 50.0% | |
| ATGGCTCAGCTGTTTGACGT+AGG | - | Chr5:15467363-15467382 | MsG0580025224.01.T01:CDS | 50.0% | |
| CAAACATCGCGTGCACCAAA+TGG | + | Chr5:15465791-15465810 | None:intergenic | 50.0% | |
| CAGCCATAGCTCTCACTTCT+TGG | - | Chr5:15467430-15467449 | MsG0580025224.01.T01:five_prime_UTR | 50.0% | |
| CCAGCAATATGCGCTGAGAA+AGG | - | Chr5:15465761-15465780 | MsG0580025224.01.T01:intron | 50.0% | |
| CCTTTCTCAGCGCATATTGC+TGG | + | Chr5:15465764-15465783 | None:intergenic | 50.0% | |
| CGATGTGTCAGTGTCGTGTT+CGG | + | Chr5:15465883-15465902 | None:intergenic | 50.0% | |
| GAGAAAGCCGTAATTAGCCG+CGG | + | Chr5:15467026-15467045 | None:intergenic | 50.0% | |
| GCAATATGCGCTGAGAAAGG+AGG | - | Chr5:15465764-15465783 | MsG0580025224.01.T01:intron | 50.0% | |
| GCTCCCAAGGTCTTACGATT+TGG | + | Chr5:15466283-15466302 | None:intergenic | 50.0% | |
| GCTGAGAAAGGAGGTCCATT+TGG | - | Chr5:15465773-15465792 | MsG0580025224.01.T01:intron | 50.0% | |
| GTGAAAGCCGCGGCTAATTA+CGG | - | Chr5:15467016-15467035 | MsG0580025224.01.T01:CDS | 50.0% | |
| TTGGCGCGGTTGAATGGTTA+AGG | - | Chr5:15466691-15466710 | MsG0580025224.01.T01:intron | 50.0% | |
| TTTCGGTTTCCTCTTTGGCG+CGG | - | Chr5:15466677-15466696 | MsG0580025224.01.T01:intron | 50.0% | |
| !! | CAACGGTGCCACTTCTATCA+CGG | + | Chr5:15466237-15466256 | None:intergenic | 50.0% |
| ACCATTCAACCGCGCCAAAG+AGG | + | Chr5:15466689-15466708 | None:intergenic | 55.0% | |
| TCCTCTTTGGCGCGGTTGAA+TGG | - | Chr5:15466685-15466704 | MsG0580025224.01.T01:intron | 55.0% | |
| GGCAAGCCTCCCATGTTTCC+TGG | + | Chr5:15465728-15465747 | None:intergenic | 60.0% | |
| ! | CTTGGTGGTAACCTCACCGC+TGG | - | Chr5:15466905-15466924 | MsG0580025224.01.T01:intron | 60.0% |
| !! | GTGTTCGGTGTCGACGTGTC+AGG | + | Chr5:15465868-15465887 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 15464852 | 15467503 | 15464852 | ID=MsG0580025224.01;Name=MsG0580025224.01 |
| Chr5 | mRNA | 15464852 | 15467503 | 15464852 | ID=MsG0580025224.01.T01;Parent=MsG0580025224.01;Name=MsG0580025224.01.T01;_AED=0.19;_eAED=0.19;_QI=102|0.87|0.88|1|1|1|9|18|403 |
| Chr5 | exon | 15464852 | 15464997 | 15464852 | ID=MsG0580025224.01.T01:exon:20930;Parent=MsG0580025224.01.T01 |
| Chr5 | exon | 15465243 | 15465481 | 15465243 | ID=MsG0580025224.01.T01:exon:20929;Parent=MsG0580025224.01.T01 |
| Chr5 | exon | 15465580 | 15465680 | 15465580 | ID=MsG0580025224.01.T01:exon:20928;Parent=MsG0580025224.01.T01 |
| Chr5 | exon | 15465775 | 15465894 | 15465775 | ID=MsG0580025224.01.T01:exon:20927;Parent=MsG0580025224.01.T01 |
| Chr5 | exon | 15466069 | 15466281 | 15466069 | ID=MsG0580025224.01.T01:exon:20926;Parent=MsG0580025224.01.T01 |
| Chr5 | exon | 15466505 | 15466626 | 15466505 | ID=MsG0580025224.01.T01:exon:20925;Parent=MsG0580025224.01.T01 |
| Chr5 | exon | 15466794 | 15466864 | 15466794 | ID=MsG0580025224.01.T01:exon:20924;Parent=MsG0580025224.01.T01 |
| Chr5 | exon | 15467007 | 15467086 | 15467007 | ID=MsG0580025224.01.T01:exon:20923;Parent=MsG0580025224.01.T01 |
| Chr5 | exon | 15467264 | 15467503 | 15467264 | ID=MsG0580025224.01.T01:exon:20922;Parent=MsG0580025224.01.T01 |
| Chr5 | five_prime_UTR | 15467402 | 15467503 | 15467402 | ID=MsG0580025224.01.T01:five_prime_utr;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15467264 | 15467401 | 15467264 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15467007 | 15467086 | 15467007 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15466794 | 15466864 | 15466794 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15466505 | 15466626 | 15466505 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15466069 | 15466281 | 15466069 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15465775 | 15465894 | 15465775 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15465580 | 15465680 | 15465580 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15465243 | 15465481 | 15465243 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | CDS | 15464870 | 15464997 | 15464870 | ID=MsG0580025224.01.T01:cds;Parent=MsG0580025224.01.T01 |
| Chr5 | three_prime_UTR | 15464852 | 15464869 | 15464852 | ID=MsG0580025224.01.T01:three_prime_utr;Parent=MsG0580025224.01.T01 |
| Gene Sequence |
| Protein sequence |
