Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013471.01.T01 | XP_013459310.1 | 60.811 | 370 | 17 | 3 | 1 | 289 | 1 | 323 | 2.72E-139 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013471.01.T01 | O48946 | 47.239 | 163 | 45 | 5 | 73 | 196 | 28 | 188 | 3.23E-35 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013471.01.T01 | A0A072UVE3 | 60.811 | 370 | 17 | 3 | 1 | 289 | 1 | 323 | 1.30e-139 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000114.01 | MsG0380013471.01 | 0.813098 | 3.040258e-51 | 1.966952e-48 |
| MsG0180000680.01 | MsG0380013471.01 | 0.803579 | 3.259257e-49 | 1.643892e-46 |
| MsG0180000854.01 | MsG0380013471.01 | 0.817042 | 4.047329e-52 | 2.915778e-49 |
| MsG0180001130.01 | MsG0380013471.01 | 0.824723 | 6.917197e-54 | 6.178201e-51 |
| MsG0180002185.01 | MsG0380013471.01 | 0.810581 | 1.073738e-50 | 6.496969e-48 |
| MsG0180003357.01 | MsG0380013471.01 | 0.841296 | 5.179325e-58 | 7.575877e-55 |
| MsG0180003379.01 | MsG0380013471.01 | 0.840492 | 8.415451e-58 | 1.200780e-54 |
| MsG0180003809.01 | MsG0380013471.01 | 0.808654 | 2.784403e-50 | 1.600981e-47 |
| MsG0180004684.01 | MsG0380013471.01 | 0.857929 | 1.167105e-62 | 2.928566e-59 |
| MsG0180005106.01 | MsG0380013471.01 | 0.840253 | 9.719195e-58 | 1.376557e-54 |
| MsG0180005160.01 | MsG0380013471.01 | 0.807107 | 5.941694e-50 | 3.280869e-47 |
| MsG0180005268.01 | MsG0380013471.01 | 0.811445 | 6.974913e-51 | 4.318558e-48 |
| MsG0180005354.01 | MsG0380013471.01 | 0.854622 | 1.088742e-61 | 2.446305e-58 |
| MsG0180005787.01 | MsG0380013471.01 | 0.824247 | 8.952994e-54 | 7.886498e-51 |
| MsG0180006050.01 | MsG0380013471.01 | 0.811909 | 5.530090e-51 | 3.465967e-48 |
| MsG0180006104.01 | MsG0380013471.01 | 0.836389 | 9.630244e-57 | 1.211847e-53 |
| MsG0280006440.01 | MsG0380013471.01 | 0.819905 | 9.084419e-53 | 7.082667e-50 |
| MsG0280010976.01 | MsG0380013471.01 | 0.801657 | 8.119870e-49 | 3.899138e-46 |
| MsG0280011073.01 | MsG0380013471.01 | 0.853175 | 2.842701e-61 | 6.087854e-58 |
| MsG0280011287.01 | MsG0380013471.01 | 0.872261 | 3.642444e-67 | 1.514275e-63 |
| MsG0380012184.01 | MsG0380013471.01 | 0.819364 | 1.207454e-52 | 9.271781e-50 |
| MsG0380012781.01 | MsG0380013471.01 | 0.805351 | 1.392169e-49 | 7.348748e-47 |
| MsG0380013471.01 | MsG0380014214.01 | 0.838865 | 2.231048e-57 | 3.027383e-54 |
| MsG0380013471.01 | MsG0380014727.01 | 0.829797 | 4.210033e-55 | 4.354985e-52 |
| MsG0380013471.01 | MsG0380014866.01 | 0.830667 | 2.580800e-55 | 2.737465e-52 |
| MsG0380013471.01 | MsG0380015215.01 | -0.828292 | 9.749941e-55 | 9.649511e-52 |
| MsG0380013471.01 | MsG0380015614.01 | 0.819483 | 1.134100e-52 | 8.738596e-50 |
| MsG0380013471.01 | MsG0380015637.01 | 0.818863 | 1.569609e-52 | 1.188856e-49 |
| MsG0380013471.01 | MsG0380015745.01 | 0.899237 | 2.417236e-77 | 2.962402e-73 |
| MsG0380013471.01 | MsG0380016117.01 | 0.860815 | 1.587684e-63 | 4.396632e-60 |
| MsG0380013471.01 | MsG0380016182.01 | 0.819018 | 1.447325e-52 | 1.100988e-49 |
| MsG0380013471.01 | MsG0380016740.01 | 0.867135 | 1.710663e-65 | 5.907556e-62 |
| MsG0380013471.01 | MsG0380016963.01 | 0.820525 | 6.551303e-53 | 5.195914e-50 |
| MsG0380013471.01 | MsG0380016973.01 | 0.809662 | 1.694143e-50 | 1.000659e-47 |
| MsG0380013471.01 | MsG0380017037.01 | 0.852651 | 4.013602e-61 | 8.444224e-58 |
| MsG0380013471.01 | MsG0380017201.01 | 0.806139 | 9.508306e-50 | 5.121763e-47 |
| MsG0380013471.01 | MsG0380017215.01 | 0.871464 | 6.702026e-67 | 2.706382e-63 |
| MsG0380013471.01 | MsG0380017229.01 | 0.855929 | 4.534528e-62 | 1.064166e-58 |
| MsG0380013471.01 | MsG0380017322.01 | 0.807618 | 4.629104e-50 | 2.590352e-47 |
| MsG0380013471.01 | MsG0380017401.01 | 0.806230 | 9.099321e-50 | 4.913004e-47 |
| MsG0380013471.01 | MsG0380017512.01 | 0.846780 | 1.752219e-59 | 3.049489e-56 |
| MsG0380013471.01 | MsG0380017914.01 | -0.820078 | 8.295067e-53 | 6.498850e-50 |
| MsG0380013471.01 | MsG0480018292.01 | 0.800333 | 1.514118e-48 | 7.031535e-46 |
| MsG0380013471.01 | MsG0480018519.01 | 0.804631 | 1.968797e-49 | 1.020151e-46 |
| MsG0380013471.01 | MsG0480018847.01 | 0.862506 | 4.829417e-64 | 1.417800e-60 |
| MsG0380013471.01 | MsG0480020024.01 | 0.819520 | 1.112480e-52 | 8.580623e-50 |
| MsG0380013471.01 | MsG0480021737.01 | 0.813062 | 3.095522e-51 | 2.000870e-48 |
| MsG0380013471.01 | MsG0480021739.01 | 0.803139 | 4.019440e-49 | 2.004402e-46 |
| MsG0380013471.01 | MsG0480022203.01 | 0.819770 | 9.752150e-53 | 7.574996e-50 |
| MsG0380013471.01 | MsG0480022239.01 | 0.827601 | 1.429794e-54 | 1.386730e-51 |
| MsG0380013471.01 | MsG0480022243.01 | 0.806275 | 8.902155e-50 | 4.812017e-47 |
| MsG0380013471.01 | MsG0480022245.01 | 0.836083 | 1.151722e-56 | 1.436093e-53 |
| MsG0380013471.01 | MsG0480022246.01 | 0.826971 | 2.024056e-54 | 1.927631e-51 |
| MsG0380013471.01 | MsG0480022248.01 | 0.846892 | 1.632777e-59 | 2.851494e-56 |
| MsG0380013471.01 | MsG0480022330.01 | 0.812453 | 4.207624e-51 | 2.676543e-48 |
| MsG0380013471.01 | MsG0480022343.01 | 0.813671 | 2.274771e-51 | 1.494942e-48 |
| MsG0380013471.01 | MsG0480022392.01 | -0.814651 | 1.382343e-51 | 9.328794e-49 |
| MsG0380013471.01 | MsG0480022393.01 | -0.805731 | 1.158516e-49 | 6.176009e-47 |
| MsG0380013471.01 | MsG0480022933.01 | 0.841264 | 5.279048e-58 | 7.714572e-55 |
| MsG0380013471.01 | MsG0480023638.01 | 0.808316 | 3.288803e-50 | 1.874484e-47 |
| MsG0380013471.01 | MsG0480023641.01 | 0.817820 | 2.704977e-52 | 1.990644e-49 |
| MsG0380013471.01 | MsG0480023867.01 | 0.813963 | 1.961137e-51 | 1.299060e-48 |
| MsG0380013471.01 | MsG0580024581.01 | 0.819622 | 1.054611e-52 | 8.156793e-50 |
| MsG0380013471.01 | MsG0580024597.01 | 0.815956 | 7.087887e-52 | 4.956489e-49 |
| MsG0380013471.01 | MsG0580024650.01 | -0.837284 | 5.690385e-57 | 7.356358e-54 |
| MsG0380013471.01 | MsG0580024829.01 | 0.819731 | 9.955199e-53 | 7.723836e-50 |
| MsG0380013471.01 | MsG0580024830.01 | 0.805880 | 1.078052e-49 | 5.768754e-47 |
| MsG0380013471.01 | MsG0580024955.01 | 0.839279 | 1.742057e-57 | 2.393978e-54 |
| MsG0380013471.01 | MsG0580025224.01 | 0.804412 | 2.187548e-49 | 1.127113e-46 |
| MsG0380013471.01 | MsG0580025329.01 | 0.801804 | 7.573711e-49 | 3.650571e-46 |
| MsG0380013471.01 | MsG0580026067.01 | 0.863583 | 2.244231e-64 | 6.837518e-61 |
| MsG0380013471.01 | MsG0580027128.01 | 0.803950 | 2.728825e-49 | 1.389556e-46 |
| MsG0380013471.01 | MsG0580027449.01 | 0.800211 | 1.602957e-48 | 7.420860e-46 |
| MsG0380013471.01 | MsG0580028459.01 | 0.804680 | 1.922837e-49 | 9.976514e-47 |
| MsG0380013471.01 | MsG0580028977.01 | 0.818064 | 2.382300e-52 | 1.764879e-49 |
| MsG0380013471.01 | MsG0580029065.01 | 0.843161 | 1.661006e-58 | 2.575878e-55 |
| MsG0380013471.01 | MsG0580029507.01 | 0.826177 | 3.129542e-54 | 2.913261e-51 |
| MsG0380013471.01 | MsG0580029794.01 | 0.801222 | 9.967157e-49 | 4.734104e-46 |
| MsG0380013471.01 | MsG0580029914.01 | 0.806198 | 9.242055e-50 | 4.985846e-47 |
| MsG0380013471.01 | MsG0580029919.01 | 0.810677 | 1.023350e-50 | 6.208240e-48 |
| MsG0380013471.01 | MsG0680030549.01 | 0.804543 | 2.054245e-49 | 1.062007e-46 |
| MsG0380013471.01 | MsG0680030964.01 | 0.803081 | 4.132985e-49 | 2.057852e-46 |
| MsG0380013471.01 | MsG0680031704.01 | 0.813972 | 1.952631e-51 | 1.293719e-48 |
| MsG0380013471.01 | MsG0680032516.01 | 0.811777 | 5.908425e-51 | 3.690238e-48 |
| MsG0380013471.01 | MsG0680034235.01 | 0.845918 | 3.008966e-59 | 5.093012e-56 |
| MsG0380013471.01 | MsG0780036117.01 | 0.820545 | 6.481446e-53 | 5.143732e-50 |
| MsG0380013471.01 | MsG0780037330.01 | 0.845868 | 3.104957e-59 | 5.247179e-56 |
| MsG0380013471.01 | MsG0780037399.01 | 0.824510 | 7.762179e-54 | 6.889832e-51 |
| MsG0380013471.01 | MsG0780038092.01 | 0.814003 | 1.921659e-51 | 1.274297e-48 |
| MsG0380013471.01 | MsG0780038644.01 | 0.820463 | 6.768485e-53 | 5.359485e-50 |
| MsG0380013471.01 | MsG0780038833.01 | 0.809376 | 1.950823e-50 | 1.143541e-47 |
| MsG0380013471.01 | MsG0780039994.01 | 0.825544 | 4.424667e-54 | 4.045036e-51 |
| MsG0380013471.01 | MsG0780040375.01 | -0.842199 | 2.991511e-58 | 4.501512e-55 |
| MsG0380013471.01 | MsG0780040444.01 | 0.816903 | 4.349584e-52 | 3.121538e-49 |
| MsG0380013471.01 | MsG0780040794.01 | 0.848607 | 5.503148e-60 | 1.015356e-56 |
| MsG0380013471.01 | MsG0780041044.01 | 0.815814 | 7.621237e-52 | 5.308934e-49 |
| MsG0380013471.01 | MsG0780041482.01 | 0.833187 | 6.157600e-56 | 7.038384e-53 |
| MsG0380013471.01 | MsG0780041557.01 | -0.809241 | 2.085123e-50 | 1.217892e-47 |
| MsG0380013471.01 | MsG0780041647.01 | 0.828636 | 8.053699e-55 | 8.051052e-52 |
| MsG0380013471.01 | MsG0780041729.01 | -0.834131 | 3.579141e-56 | 4.208150e-53 |
| MsG0380013471.01 | MsG0880042035.01 | 0.883268 | 5.178220e-71 | 3.260198e-67 |
| MsG0380013471.01 | MsG0880042223.01 | 0.801474 | 8.853596e-49 | 4.232005e-46 |
| MsG0380013471.01 | MsG0880042743.01 | 0.843393 | 1.440649e-58 | 2.251075e-55 |
| MsG0380013471.01 | MsG0880043162.01 | 0.815592 | 8.544807e-52 | 5.916130e-49 |
| MsG0380013471.01 | MsG0880044638.01 | 0.829936 | 3.893529e-55 | 4.043279e-52 |
| MsG0380013471.01 | MsG0880045869.01 | 0.824119 | 9.590631e-54 | 8.417932e-51 |
| MsG0380013471.01 | MsG0880047152.01 | 0.847632 | 1.022666e-59 | 1.829027e-56 |
| MsG0380013471.01 | MsG0880047696.01 | 0.824066 | 9.870790e-54 | 8.650923e-51 |
| MsG0280006634.01 | MsG0380013471.01 | 0.809099 | 2.236806e-50 | 1.301499e-47 |
| MsG0280006669.01 | MsG0380013471.01 | 0.847936 | 8.436065e-60 | 1.523408e-56 |
| MsG0280007011.01 | MsG0380013471.01 | 0.819585 | 1.074922e-52 | 8.306193e-50 |
| MsG0280007165.01 | MsG0380013471.01 | -0.807451 | 5.021806e-50 | 2.798109e-47 |
| MsG0280007691.01 | MsG0380013471.01 | 0.861010 | 1.384993e-63 | 3.860862e-60 |
| MsG0280007775.01 | MsG0380013471.01 | 0.840759 | 7.165643e-58 | 1.030928e-54 |
| MsG0280007776.01 | MsG0380013471.01 | 0.837704 | 4.442702e-57 | 5.819057e-54 |
| MsG0280008932.01 | MsG0380013471.01 | 0.854470 | 1.205121e-61 | 2.694220e-58 |
| MsG0280009157.01 | MsG0380013471.01 | 0.843266 | 1.557761e-58 | 2.424098e-55 |
| MsG0280009270.01 | MsG0380013471.01 | 0.807111 | 5.929982e-50 | 3.274766e-47 |
| MsG0280009350.01 | MsG0380013471.01 | 0.855327 | 6.794221e-62 | 1.562984e-58 |
| MsG0280009447.01 | MsG0380013471.01 | 0.832957 | 7.026815e-56 | 7.976566e-53 |
| MsG0280009554.01 | MsG0380013471.01 | 0.808143 | 3.579800e-50 | 2.031072e-47 |
| MsG0280010158.01 | MsG0380013471.01 | 0.826195 | 3.099460e-54 | 2.886720e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013471.01.T01 | MTR_3g436010 | 60.811 | 370 | 17 | 3 | 1 | 289 | 1 | 323 | 3.30e-143 | 405 |
| MsG0380013471.01.T01 | MTR_3g436010 | 62.132 | 272 | 15 | 2 | 1 | 231 | 1 | 225 | 1.49e-108 | 315 |
| MsG0380013471.01.T01 | MTR_3g107520 | 40.254 | 236 | 50 | 3 | 3 | 196 | 6 | 192 | 3.67e-36 | 137 |
| MsG0380013471.01.T01 | MTR_4g130510 | 56.180 | 89 | 33 | 1 | 54 | 142 | 13 | 95 | 1.44e-25 | 106 |
| MsG0380013471.01.T01 | MTR_4g130510 | 56.180 | 89 | 33 | 1 | 54 | 142 | 13 | 95 | 3.33e-25 | 105 |
| MsG0380013471.01.T01 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 72 | 142 | 25 | 95 | 3.52e-25 | 105 |
| MsG0380013471.01.T01 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 72 | 142 | 25 | 95 | 3.55e-25 | 105 |
| MsG0380013471.01.T01 | MTR_1g098550 | 56.250 | 80 | 35 | 0 | 79 | 158 | 34 | 113 | 4.22e-25 | 105 |
| MsG0380013471.01.T01 | MTR_1g098550 | 56.250 | 80 | 35 | 0 | 79 | 158 | 38 | 117 | 4.27e-25 | 105 |
| MsG0380013471.01.T01 | MTR_3g030040 | 48.276 | 87 | 40 | 1 | 74 | 155 | 11 | 97 | 7.32e-23 | 99.0 |
| MsG0380013471.01.T01 | MTR_8g063270 | 59.155 | 71 | 29 | 0 | 72 | 142 | 25 | 95 | 3.02e-22 | 97.1 |
| MsG0380013471.01.T01 | MTR_8g037260 | 50.549 | 91 | 42 | 2 | 74 | 162 | 11 | 100 | 4.51e-22 | 96.7 |
| MsG0380013471.01.T01 | MTR_2g035780 | 47.727 | 88 | 45 | 1 | 72 | 158 | 25 | 112 | 1.29e-21 | 95.1 |
| MsG0380013471.01.T01 | MTR_8g092590 | 59.420 | 69 | 28 | 0 | 74 | 142 | 29 | 97 | 2.35e-21 | 94.4 |
| MsG0380013471.01.T01 | MTR_3g007770 | 45.361 | 97 | 46 | 1 | 76 | 165 | 31 | 127 | 4.07e-18 | 84.7 |
| MsG0380013471.01.T01 | MTR_7g106680 | 38.760 | 129 | 62 | 3 | 72 | 185 | 8 | 134 | 5.31e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013471.01.T01 | AT4G32410 | 47.239 | 163 | 45 | 5 | 73 | 196 | 28 | 188 | 3.29e-36 | 137 |
| MsG0380013471.01.T01 | AT2G25540 | 68.235 | 85 | 27 | 0 | 74 | 158 | 23 | 107 | 1.65e-33 | 130 |
| MsG0380013471.01.T01 | AT5G17420 | 55.056 | 89 | 34 | 1 | 54 | 142 | 13 | 95 | 1.74e-25 | 106 |
| MsG0380013471.01.T01 | AT5G05170 | 57.500 | 80 | 34 | 0 | 74 | 153 | 10 | 89 | 1.26e-23 | 101 |
| MsG0380013471.01.T01 | AT5G11260 | 48.092 | 131 | 27 | 2 | 197 | 286 | 33 | 163 | 6.06e-23 | 93.2 |
| MsG0380013471.01.T01 | AT4G39350 | 56.522 | 69 | 30 | 0 | 74 | 142 | 29 | 97 | 8.51e-21 | 92.8 |
| MsG0380013471.01.T01 | AT5G09870 | 57.971 | 69 | 29 | 0 | 74 | 142 | 29 | 97 | 8.64e-21 | 92.8 |
| MsG0380013471.01.T01 | AT5G64740 | 57.971 | 69 | 29 | 0 | 74 | 142 | 29 | 97 | 1.75e-20 | 92.0 |
| MsG0380013471.01.T01 | AT5G11260 | 44.348 | 115 | 23 | 2 | 197 | 270 | 33 | 147 | 1.10e-17 | 79.3 |
| MsG0380013471.01.T01 | AT2G21770 | 56.250 | 64 | 28 | 0 | 79 | 142 | 34 | 97 | 1.67e-17 | 83.2 |
| MsG0380013471.01.T01 | AT5G44030 | 41.463 | 82 | 48 | 0 | 78 | 159 | 17 | 98 | 2.07e-17 | 82.8 |
| MsG0380013471.01.T01 | AT5G44030 | 41.463 | 82 | 48 | 0 | 78 | 159 | 17 | 98 | 2.20e-17 | 82.8 |
| MsG0380013471.01.T01 | AT4G18780 | 36.449 | 107 | 46 | 3 | 83 | 188 | 8 | 93 | 5.79e-13 | 69.7 |
Find 88 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACATTTCATTGCTAATTT+TGG | 0.143242 | 3:+38962760 | MsG0380013471.01.T01:CDS |
| TTGACCATTCAAATTCTTTA+AGG | 0.156035 | 3:-38962909 | None:intergenic |
| CCATTCAAATTTAGGTAGTA+TGG | 0.223722 | 3:+38966096 | MsG0380013471.01.T01:three_prime_UTR |
| AAGATGATGTCGACGATTTA+AGG | 0.228388 | 3:+38963212 | MsG0380013471.01.T01:CDS |
| AACTTTCTCCATTCAAATTT+AGG | 0.256523 | 3:+38966088 | MsG0380013471.01.T01:three_prime_UTR |
| TACCATTTGTGAGGATATAA+AGG | 0.299344 | 3:+38966162 | MsG0380013471.01.T01:three_prime_UTR |
| AACTCTGTACCTGGTTGCTT+TGG | 0.303795 | 3:-38963995 | None:intergenic |
| CTAATTTCATTCAGCATTGT+TGG | 0.308963 | 3:-38965736 | None:intergenic |
| TAGACATGGGTTTCTGAAAC+TGG | 0.327462 | 3:+38962164 | MsG0380013471.01.T01:CDS |
| GCAGATTCACCTCCCATATC+TGG | 0.342040 | 3:-38964726 | None:intergenic |
| ATTCTTTCTAGGTGTGCATT+TGG | 0.342651 | 3:+38965834 | MsG0380013471.01.T01:three_prime_UTR |
| CATATCAAAACACGATGTTT+AGG | 0.361824 | 3:-38965912 | None:intergenic |
| GCAAACTACATCAGGTCCTT+TGG | 0.365962 | 3:+38963934 | MsG0380013471.01.T01:CDS |
| TGACCATTCAAATTCTTTAA+GGG | 0.374526 | 3:-38962908 | None:intergenic |
| GATCAGAAGAGTGCCAGATA+TGG | 0.377906 | 3:+38964713 | MsG0380013471.01.T01:CDS |
| AAGATGGAAGGAATGGAAAC+AGG | 0.385284 | 3:+38962111 | MsG0380013471.01.T01:exon |
| TCTTGCATTGTGGACATGAT+TGG | 0.409151 | 3:-38963054 | None:intergenic |
| AGTGATAATCAAAACTTAAG+AGG | 0.411538 | 3:+38965757 | MsG0380013471.01.T01:three_prime_UTR |
| CTTTACGAGAGCTGATGTTC+CGG | 0.414240 | 3:-38964748 | None:intergenic |
| CAACAACAACTTTGAGAAGA+TGG | 0.421373 | 3:+38962082 | MsG0380013471.01.T01:five_prime_UTR |
| CAAACTACATCAGGTCCTTT+GGG | 0.435196 | 3:+38963935 | MsG0380013471.01.T01:CDS |
| GCTCTGAATTCTTCTTCTCT+AGG | 0.454026 | 3:-38965077 | None:intergenic |
| AAACCCTTAAAGAATTTGAA+TGG | 0.465051 | 3:+38962905 | MsG0380013471.01.T01:CDS |
| ACCATTTGTGAGGATATAAA+GGG | 0.465713 | 3:+38966163 | MsG0380013471.01.T01:three_prime_UTR |
| ACCCTTTATATCCTCACAAA+TGG | 0.466178 | 3:-38966164 | None:intergenic |
| CAAGCAAGGAGAGGAGGAAA+AGG | 0.473108 | 3:+38965020 | MsG0380013471.01.T01:CDS |
| GTGAAGCACTGACATGAAAA+CGG | 0.473292 | 3:+38965934 | MsG0380013471.01.T01:three_prime_UTR |
| CAATCTGTGCAAACTACATC+AGG | 0.479607 | 3:+38963926 | MsG0380013471.01.T01:CDS |
| ACGGGACATGTAATTGACTT+TGG | 0.479948 | 3:+38965953 | MsG0380013471.01.T01:three_prime_UTR |
| ATCAGAAGAGTGCCAGATAT+GGG | 0.480465 | 3:+38964714 | MsG0380013471.01.T01:CDS |
| CCATACTACCTAAATTTGAA+TGG | 0.483920 | 3:-38966096 | None:intergenic |
| TAACTTGTGAGAAATTGATC+TGG | 0.490744 | 3:+38962813 | MsG0380013471.01.T01:CDS |
| GAGAAGATGGAAGAAGAAGA+TGG | 0.507806 | 3:+38962095 | MsG0380013471.01.T01:exon |
| TGAAAATCAAATGCTGAGAC+AGG | 0.509539 | 3:+38965128 | MsG0380013471.01.T01:CDS |
| TAGTATGATAAACTCACAAA+TGG | 0.510015 | 3:-38966197 | None:intergenic |
| TGAAGCACTGACATGAAAAC+GGG | 0.511180 | 3:+38965935 | MsG0380013471.01.T01:three_prime_UTR |
| GAAGAAGAAGATGGAAGGAA+TGG | 0.514078 | 3:+38962104 | MsG0380013471.01.T01:exon |
| ATTCTTGTTATGAATACGAA+TGG | 0.515816 | 3:+38963020 | MsG0380013471.01.T01:CDS |
| GAGTTTCAGCTCAGCAAGCA+AGG | 0.519685 | 3:+38965006 | MsG0380013471.01.T01:intron |
| GACATGGGTTTCTGAAACTG+GGG | 0.527187 | 3:+38962166 | MsG0380013471.01.T01:CDS |
| CAAATATGTGGTGATACTGT+TGG | 0.528030 | 3:+38962938 | MsG0380013471.01.T01:CDS |
| TTCAGATGATCCTCGTGTGA+AGG | 0.538525 | 3:+38963177 | MsG0380013471.01.T01:intron |
| AGACATGGGTTTCTGAAACT+GGG | 0.539124 | 3:+38962165 | MsG0380013471.01.T01:CDS |
| TAGAATCTCAACATGGTAGC+GGG | 0.541471 | 3:+38962021 | MsG0380013471.01.T01:five_prime_UTR |
| ATCAGCTCTCGTAAAGGCAC+TGG | 0.547643 | 3:+38964755 | MsG0380013471.01.T01:CDS |
| GAACTTGTTCGAGCTAGACA+TGG | 0.548071 | 3:+38962150 | MsG0380013471.01.T01:CDS |
| CGGAACATCAGCTCTCGTAA+AGG | 0.552875 | 3:+38964749 | MsG0380013471.01.T01:CDS |
| TGTGAGAAATTGATCTGGAT+AGG | 0.554184 | 3:+38962818 | MsG0380013471.01.T01:CDS |
| TGGTTGCTTTGGATCAACAT+AGG | 0.561478 | 3:-38963984 | None:intergenic |
| AAAGGCATACTTGAGTGACT+TGG | 0.562983 | 3:+38965038 | MsG0380013471.01.T01:CDS |
| TGGAAACAGGGTCACATGAA+AGG | 0.564839 | 3:+38962124 | MsG0380013471.01.T01:CDS |
| AGATGGAAGAAGAAGATGGA+AGG | 0.566909 | 3:+38962099 | MsG0380013471.01.T01:exon |
| GCTCAGCAAGCAAGGAGAGG+AGG | 0.567732 | 3:+38965014 | MsG0380013471.01.T01:intron |
| AACACTACAGCTAGCAGGAG+AGG | 0.568592 | 3:+38965699 | MsG0380013471.01.T01:CDS |
| TTTGATTCTAATGAATCCAA+TGG | 0.569268 | 3:+38961986 | None:intergenic |
| TATGGATGTTACCATTTGTG+AGG | 0.570651 | 3:+38966153 | MsG0380013471.01.T01:three_prime_UTR |
| TGAAGAACACTACAGCTAGC+AGG | 0.574364 | 3:+38965694 | MsG0380013471.01.T01:CDS |
| TCAGATGATCCTCGTGTGAA+GGG | 0.579737 | 3:+38963178 | MsG0380013471.01.T01:intron |
| GTATGGAGGTGAGTTACTAT+CGG | 0.580071 | 3:+38966113 | MsG0380013471.01.T01:three_prime_UTR |
| GTGCATTTGGAATTTCATGA+AGG | 0.584245 | 3:+38965847 | MsG0380013471.01.T01:three_prime_UTR |
| GTGATAATCAAAACTTAAGA+GGG | 0.592420 | 3:+38965758 | MsG0380013471.01.T01:three_prime_UTR |
| ACTGTTGGATTAACAGCCAC+CGG | 0.592728 | 3:+38962953 | MsG0380013471.01.T01:CDS |
| GGTCAAATCTGTCAAATATG+TGG | 0.604762 | 3:+38962926 | MsG0380013471.01.T01:CDS |
| TTGAATCTAGTCTTGCATTG+TGG | 0.607208 | 3:-38963064 | None:intergenic |
| CATAACAAGAATAACAAAGT+GGG | 0.607961 | 3:-38963009 | None:intergenic |
| TGTCGACGATTTAAGGAATG+AGG | 0.608917 | 3:+38963219 | MsG0380013471.01.T01:CDS |
| AACTTGTTCGAGCTAGACAT+GGG | 0.609249 | 3:+38962151 | MsG0380013471.01.T01:CDS |
| TTCAAATTTAGGTAGTATGG+AGG | 0.610153 | 3:+38966099 | MsG0380013471.01.T01:three_prime_UTR |
| AGCAGGAGAGGAAGCAACGG+TGG | 0.611550 | 3:+38965711 | MsG0380013471.01.T01:CDS |
| GCAAGCAACAAAGACTTCGC+CGG | 0.615968 | 3:-38962972 | None:intergenic |
| GCTAGCAGGAGAGGAAGCAA+CGG | 0.617888 | 3:+38965708 | MsG0380013471.01.T01:CDS |
| ATAGAATCTCAACATGGTAG+CGG | 0.621234 | 3:+38962020 | MsG0380013471.01.T01:five_prime_UTR |
| CTAGTGTAAAACTGATCATG+AGG | 0.622025 | 3:-38966021 | None:intergenic |
| TATGTTGATCCAAAGCAACC+AGG | 0.626073 | 3:+38963986 | MsG0380013471.01.T01:CDS |
| AGCAACAAAGACTTCGCCGG+TGG | 0.627106 | 3:-38962969 | None:intergenic |
| TCATAACAAGAATAACAAAG+TGG | 0.629424 | 3:-38963010 | None:intergenic |
| TCAGCTCAGCAAGCAAGGAG+AGG | 0.635060 | 3:+38965011 | MsG0380013471.01.T01:intron |
| ACTAGATTCAAAAGTCACAA+AGG | 0.638228 | 3:+38963076 | MsG0380013471.01.T01:CDS |
| AGATGGAAGGAATGGAAACA+GGG | 0.639774 | 3:+38962112 | MsG0380013471.01.T01:exon |
| GATATGGGAGGTGAATCTGC+CGG | 0.641842 | 3:+38964729 | MsG0380013471.01.T01:CDS |
| ACAAGAATAACAAAGTGGGA+AGG | 0.660604 | 3:-38963005 | None:intergenic |
| GATGATCCTCGTGTGAAGGG+AGG | 0.661722 | 3:+38963181 | MsG0380013471.01.T01:intron |
| TCATCACCTCCCTTCACACG+AGG | 0.674512 | 3:-38963187 | None:intergenic |
| TGAGTATCAGAAGTAGCACA+TGG | 0.676546 | 3:-38963905 | None:intergenic |
| AGAAGAGTGCCAGATATGGG+AGG | 0.694389 | 3:+38964717 | MsG0380013471.01.T01:CDS |
| AAAGTGGGAAGGAACACTCG+TGG | 0.715900 | 3:-38962994 | None:intergenic |
| TCCAGGTCTTGAGAGTGACG+AGG | 0.727846 | 3:+38964689 | MsG0380013471.01.T01:intron |
| ATATGCATAGAATCTCAACA+TGG | 0.764099 | 3:+38962014 | MsG0380013471.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAATAATAATATGT+AGG | + | Chr3:38962538-38962557 | MsG0380013471.01.T01:intron | 10.0% |
| !! | ATCATATGTGAAATAATATT+TGG | + | Chr3:38963820-38963839 | MsG0380013471.01.T01:intron | 15.0% |
| !! | GTTTAAGAAAGTAAAATTTA+TGG | + | Chr3:38963671-38963690 | MsG0380013471.01.T01:intron | 15.0% |
| !! | TCTTAATTTAGAAAATGAAA+AGG | - | Chr3:38964232-38964251 | None:intergenic | 15.0% |
| !!! | GTTTTTGTAATAATTTCATA+TGG | + | Chr3:38966135-38966154 | MsG0380013471.01.T01:three_prime_UTR | 15.0% |
| !!! | TACTAACTGTATATTTTTTA+TGG | + | Chr3:38963863-38963882 | MsG0380013471.01.T01:intron | 15.0% |
| !!! | TCATTTGAACTTTTTAAAAT+CGG | + | Chr3:38963604-38963623 | MsG0380013471.01.T01:intron | 15.0% |
| !!! | TCTAAAATATTGTTTTAGAA+AGG | + | Chr3:38965339-38965358 | MsG0380013471.01.T01:intron | 15.0% |
| !! | AAAAGTTTATGCATATTGAA+AGG | - | Chr3:38964115-38964134 | None:intergenic | 20.0% |
| !! | AATAAAATGGTAATCTTGAT+TGG | + | Chr3:38964621-38964640 | MsG0380013471.01.T01:intron | 20.0% |
| !! | AATACTAACAATATTGACAT+AGG | - | Chr3:38965519-38965538 | None:intergenic | 20.0% |
| !! | ACATCACATGAATAATAAAA+TGG | + | Chr3:38964608-38964627 | MsG0380013471.01.T01:intron | 20.0% |
| !! | ATACATTAAAGGAATTCTAT+CGG | - | Chr3:38964423-38964442 | None:intergenic | 20.0% |
| !! | ATAGAAGTAAAAGTCTTTAT+AGG | + | Chr3:38964167-38964186 | MsG0380013471.01.T01:intron | 20.0% |
| !! | CTTAATATAGTGTTTAGAAA+GGG | + | Chr3:38962443-38962462 | MsG0380013471.01.T01:intron | 20.0% |
| !! | TCTTAATATAGTGTTTAGAA+AGG | + | Chr3:38962442-38962461 | MsG0380013471.01.T01:intron | 20.0% |
| !! | TTAACTTATATATTCACAGT+TGG | + | Chr3:38963432-38963451 | MsG0380013471.01.T01:intron | 20.0% |
| !! | TTCATTTAATGGTATATGAT+TGG | + | Chr3:38965657-38965676 | MsG0380013471.01.T01:intron | 20.0% |
| !! | TTTATGCTTGAAATGAAAAT+GGG | + | Chr3:38962279-38962298 | MsG0380013471.01.T01:intron | 20.0% |
| !!! | AAATTCGAACTTTAAAAAGA+AGG | - | Chr3:38962260-38962279 | None:intergenic | 20.0% |
| !!! | AATTTCTTGTTTTCTTTTCT+GGG | + | Chr3:38962217-38962236 | MsG0380013471.01.T01:intron | 20.0% |
| !!! | ATACATTTCATTGCTAATTT+TGG | + | Chr3:38962760-38962779 | MsG0380013471.01.T01:CDS | 20.0% |
| !!! | TGTAATTTGCAATTAATATG+TGG | + | Chr3:38962494-38962513 | MsG0380013471.01.T01:intron | 20.0% |
| !!! | TTTTATGCTTGAAATGAAAA+TGG | + | Chr3:38962278-38962297 | MsG0380013471.01.T01:intron | 20.0% |
| ! | AAACCCTTAAAGAATTTGAA+TGG | + | Chr3:38962905-38962924 | MsG0380013471.01.T01:CDS | 25.0% |
| ! | AAATGCTATGAATCAATCAT+AGG | - | Chr3:38964927-38964946 | None:intergenic | 25.0% |
| ! | AACATTAAAAGTGAAGAAGT+AGG | - | Chr3:38963483-38963502 | None:intergenic | 25.0% |
| ! | AACTAAATCATAGCTAAATG+AGG | - | Chr3:38962356-38962375 | None:intergenic | 25.0% |
| ! | AACTTTCTCCATTCAAATTT+AGG | + | Chr3:38966088-38966107 | MsG0380013471.01.T01:three_prime_UTR | 25.0% |
| ! | AATTAGCAATGAAATGTATC+TGG | - | Chr3:38962759-38962778 | None:intergenic | 25.0% |
| ! | AGTGATAATCAAAACTTAAG+AGG | + | Chr3:38965757-38965776 | MsG0380013471.01.T01:three_prime_UTR | 25.0% |
| ! | ATACACACCAATAATTGATA+GGG | - | Chr3:38965463-38965482 | None:intergenic | 25.0% |
| ! | ATGAATCAATCATAGGAAAA+AGG | - | Chr3:38964920-38964939 | None:intergenic | 25.0% |
| ! | CATAACAAGAATAACAAAGT+GGG | - | Chr3:38963012-38963031 | None:intergenic | 25.0% |
| ! | GGTATTATTGTTCTTTAGAT+AGG | + | Chr3:38965237-38965256 | MsG0380013471.01.T01:intron | 25.0% |
| ! | GTGATAATCAAAACTTAAGA+GGG | + | Chr3:38965758-38965777 | MsG0380013471.01.T01:three_prime_UTR | 25.0% |
| ! | TAAATGACACTCATTTGAAA+TGG | - | Chr3:38965376-38965395 | None:intergenic | 25.0% |
| ! | TAGTATGATAAACTCACAAA+TGG | - | Chr3:38966200-38966219 | None:intergenic | 25.0% |
| ! | TCAAACCAAGTAAATTATCT+AGG | - | Chr3:38964647-38964666 | None:intergenic | 25.0% |
| ! | TCATAACAAGAATAACAAAG+TGG | - | Chr3:38963013-38963032 | None:intergenic | 25.0% |
| ! | TGAACTAGAATATGCAAATT+TGG | - | Chr3:38965641-38965660 | None:intergenic | 25.0% |
| ! | TGACCATTCAAATTCTTTAA+GGG | - | Chr3:38962911-38962930 | None:intergenic | 25.0% |
| ! | TGTTAGTATTATGTTTAGAG+TGG | + | Chr3:38965529-38965548 | MsG0380013471.01.T01:intron | 25.0% |
| ! | TTGACCATTCAAATTCTTTA+AGG | - | Chr3:38962912-38962931 | None:intergenic | 25.0% |
| !! | AATTTTCAGACTCTTGAATT+TGG | + | Chr3:38963380-38963399 | MsG0380013471.01.T01:intron | 25.0% |
| !! | ATTCTTGTTATGAATACGAA+TGG | + | Chr3:38963020-38963039 | MsG0380013471.01.T01:CDS | 25.0% |
| !! | GTTAGTATTATGTTTAGAGT+GGG | + | Chr3:38965530-38965549 | MsG0380013471.01.T01:intron | 25.0% |
| !! | TATAAGTTAACACATTTTGC+AGG | - | Chr3:38963422-38963441 | None:intergenic | 25.0% |
| !! | TTAGTATTATGTTTAGAGTG+GGG | + | Chr3:38965531-38965550 | MsG0380013471.01.T01:intron | 25.0% |
| !! | TTCCATTTTCTCATTATTAC+CGG | + | Chr3:38964539-38964558 | MsG0380013471.01.T01:intron | 25.0% |
| !!! | ATAAAATACTAGCATTGACA+TGG | - | Chr3:38964580-38964599 | None:intergenic | 25.0% |
| !!! | ATTTTTTATGGTTAGATGTC+TGG | + | Chr3:38963875-38963894 | MsG0380013471.01.T01:intron | 25.0% |
| !!! | GAATTTCTTGTTTTCTTTTC+TGG | + | Chr3:38962216-38962235 | MsG0380013471.01.T01:intron | 25.0% |
| !!! | GCATATTCTAGTTCATTTAA+TGG | + | Chr3:38965646-38965665 | MsG0380013471.01.T01:intron | 25.0% |
| !!! | GTAATTTGTTTGTTACATTG+TGG | + | Chr3:38964950-38964969 | MsG0380013471.01.T01:intron | 25.0% |
| !!! | TAGTTTTGATGATTCTTTCT+AGG | + | Chr3:38965823-38965842 | MsG0380013471.01.T01:three_prime_UTR | 25.0% |
| !!! | TTCTATTGTGAGTATTTTGA+AGG | - | Chr3:38964153-38964172 | None:intergenic | 25.0% |
| !!! | TTTCAAATGAGTGTCATTTA+AGG | + | Chr3:38965376-38965395 | MsG0380013471.01.T01:intron | 25.0% |
| AAGAACAATAATACCATGAC+AGG | - | Chr3:38965232-38965251 | None:intergenic | 30.0% | |
| AATTGAGCTAAGATGTAGAA+GGG | + | Chr3:38963738-38963757 | MsG0380013471.01.T01:intron | 30.0% | |
| ACCATTTGTGAGGATATAAA+GGG | + | Chr3:38966163-38966182 | MsG0380013471.01.T01:three_prime_UTR | 30.0% | |
| ACTAGATTCAAAAGTCACAA+AGG | + | Chr3:38963076-38963095 | MsG0380013471.01.T01:CDS | 30.0% | |
| AGAACAATAATACCATGACA+GGG | - | Chr3:38965231-38965250 | None:intergenic | 30.0% | |
| AGAACTATGATTGTAGTTTG+TGG | + | Chr3:38962704-38962723 | MsG0380013471.01.T01:intron | 30.0% | |
| ATATGCATAGAATCTCAACA+TGG | + | Chr3:38962014-38962033 | MsG0380013471.01.T01:five_prime_UTR | 30.0% | |
| CATATCAAAACACGATGTTT+AGG | - | Chr3:38965915-38965934 | None:intergenic | 30.0% | |
| CCATACTACCTAAATTTGAA+TGG | - | Chr3:38966099-38966118 | None:intergenic | 30.0% | |
| CCATTCAAATTTAGGTAGTA+TGG | + | Chr3:38966096-38966115 | MsG0380013471.01.T01:three_prime_UTR | 30.0% | |
| CTAATTTCATTCAGCATTGT+TGG | - | Chr3:38965739-38965758 | None:intergenic | 30.0% | |
| CTGAAGATTATAATAGCATG+AGG | + | Chr3:38962645-38962664 | MsG0380013471.01.T01:intron | 30.0% | |
| GACACAGAAAAACAAAATTG+TGG | - | Chr3:38964195-38964214 | None:intergenic | 30.0% | |
| GATACACACCAATAATTGAT+AGG | - | Chr3:38965464-38965483 | None:intergenic | 30.0% | |
| GTTCAAAAGTTTACCAAAAC+TGG | - | Chr3:38964256-38964275 | None:intergenic | 30.0% | |
| TAACCAACCCTATCAATTAT+TGG | + | Chr3:38965453-38965472 | MsG0380013471.01.T01:intron | 30.0% | |
| TACCATTTGTGAGGATATAA+AGG | + | Chr3:38966162-38966181 | MsG0380013471.01.T01:three_prime_UTR | 30.0% | |
| TTCAAATTTAGGTAGTATGG+AGG | + | Chr3:38966099-38966118 | MsG0380013471.01.T01:three_prime_UTR | 30.0% | |
| TTTGGGGATAAAATGATGTT+TGG | - | Chr3:38965599-38965618 | None:intergenic | 30.0% | |
| ! | AATTCACAGGGAGAAATTTT+TGG | - | Chr3:38965617-38965636 | None:intergenic | 30.0% |
| ! | ACTTTTGAACAAACACTTGT+AGG | + | Chr3:38964266-38964285 | MsG0380013471.01.T01:intron | 30.0% |
| ! | AGGATAAAACACGATGTTTT+AGG | - | Chr3:38965895-38965914 | None:intergenic | 30.0% |
| ! | ATAAAATGATGTTTGGTGGA+AGG | - | Chr3:38965592-38965611 | None:intergenic | 30.0% |
| ! | ATTCACAGGGAGAAATTTTT+GGG | - | Chr3:38965616-38965635 | None:intergenic | 30.0% |
| ! | ATTGGCCTAGATAATTTACT+TGG | + | Chr3:38964639-38964658 | MsG0380013471.01.T01:intron | 30.0% |
| ! | TAAAATGATGTTTGGTGGAA+GGG | - | Chr3:38965591-38965610 | None:intergenic | 30.0% |
| ! | TAACTTGTGAGAAATTGATC+TGG | + | Chr3:38962813-38962832 | MsG0380013471.01.T01:CDS | 30.0% |
| ! | TCTAAATTAAGAGCCAGTTT+TGG | + | Chr3:38964240-38964259 | MsG0380013471.01.T01:intron | 30.0% |
| !!! | TCTATGCATATTTTAGCCAT+TGG | - | Chr3:38962005-38962024 | None:intergenic | 30.0% |
| AAAATGGTAATAGGCTACTG+AGG | + | Chr3:38964979-38964998 | MsG0380013471.01.T01:intron | 35.0% | |
| AAGATGATGTCGACGATTTA+AGG | + | Chr3:38963212-38963231 | MsG0380013471.01.T01:CDS | 35.0% | |
| ACAAGAATAACAAAGTGGGA+AGG | - | Chr3:38963008-38963027 | None:intergenic | 35.0% | |
| ACACCAATAATTGATAGGGT+TGG | - | Chr3:38965459-38965478 | None:intergenic | 35.0% | |
| ACCCTTTATATCCTCACAAA+TGG | - | Chr3:38966167-38966186 | None:intergenic | 35.0% | |
| ATAGAATCTCAACATGGTAG+CGG | + | Chr3:38962020-38962039 | MsG0380013471.01.T01:five_prime_UTR | 35.0% | |
| ATCCACATTCATCTTGTTCA+TGG | - | Chr3:38963157-38963176 | None:intergenic | 35.0% | |
| ATGCAAATTTGGCAATTCAC+AGG | - | Chr3:38965630-38965649 | None:intergenic | 35.0% | |
| ATTAGAAGTTTGTCACCTGT+AGG | + | Chr3:38962573-38962592 | MsG0380013471.01.T01:intron | 35.0% | |
| ATTCTTTCTAGGTGTGCATT+TGG | + | Chr3:38965834-38965853 | MsG0380013471.01.T01:three_prime_UTR | 35.0% | |
| CAAATATGTGGTGATACTGT+TGG | + | Chr3:38962938-38962957 | MsG0380013471.01.T01:CDS | 35.0% | |
| CAACAGGAGTGATACATTAA+AGG | - | Chr3:38964434-38964453 | None:intergenic | 35.0% | |
| CAATCATAGGAAAAAGGAGT+TGG | - | Chr3:38964914-38964933 | None:intergenic | 35.0% | |
| CAATTGAGCTAAGATGTAGA+AGG | + | Chr3:38963737-38963756 | MsG0380013471.01.T01:intron | 35.0% | |
| CACCGGTAATAATGAGAAAA+TGG | - | Chr3:38964544-38964563 | None:intergenic | 35.0% | |
| CTAGTGTAAAACTGATCATG+AGG | - | Chr3:38966024-38966043 | None:intergenic | 35.0% | |
| GGTCAAATCTGTCAAATATG+TGG | + | Chr3:38962926-38962945 | MsG0380013471.01.T01:CDS | 35.0% | |
| GTGTAGCATATCACATTTCA+TGG | + | Chr3:38964035-38964054 | MsG0380013471.01.T01:intron | 35.0% | |
| GTTTGAACTCTTAGTGACTT+TGG | + | Chr3:38964661-38964680 | MsG0380013471.01.T01:intron | 35.0% | |
| TACATTGTGGCGTGTAAAAA+TGG | + | Chr3:38964963-38964982 | MsG0380013471.01.T01:intron | 35.0% | |
| TATGGATGTTACCATTTGTG+AGG | + | Chr3:38966153-38966172 | MsG0380013471.01.T01:three_prime_UTR | 35.0% | |
| TGAAAATCAAATGCTGAGAC+AGG | + | Chr3:38965128-38965147 | MsG0380013471.01.T01:CDS | 35.0% | |
| TGCAAATTTGGCAATTCACA+GGG | - | Chr3:38965629-38965648 | None:intergenic | 35.0% | |
| TGCTACACTACAATCATTTC+AGG | - | Chr3:38964023-38964042 | None:intergenic | 35.0% | |
| TGGCGTGTAAAAATGGTAAT+AGG | + | Chr3:38964970-38964989 | MsG0380013471.01.T01:intron | 35.0% | |
| TGTGAGAAATTGATCTGGAT+AGG | + | Chr3:38962818-38962837 | MsG0380013471.01.T01:CDS | 35.0% | |
| TTAAGGAATGAGGTCAAGTA+TGG | + | Chr3:38963229-38963248 | MsG0380013471.01.T01:intron | 35.0% | |
| TTTAGATAGGTTACATGAGC+TGG | + | Chr3:38965250-38965269 | MsG0380013471.01.T01:intron | 35.0% | |
| ! | AAAATGATGTTTGGTGGAAG+GGG | - | Chr3:38965590-38965609 | None:intergenic | 35.0% |
| ! | ATGACACTCATTTGAAATGG+AGG | - | Chr3:38965373-38965392 | None:intergenic | 35.0% |
| ! | CAACAACAACTTTGAGAAGA+TGG | + | Chr3:38962082-38962101 | MsG0380013471.01.T01:five_prime_UTR | 35.0% |
| ! | CTGAAGTGTTAGTATCACAT+GGG | - | Chr3:38964468-38964487 | None:intergenic | 35.0% |
| ! | GTGCATTTGGAATTTCATGA+AGG | + | Chr3:38965847-38965866 | MsG0380013471.01.T01:three_prime_UTR | 35.0% |
| ! | TCTGAAGTGTTAGTATCACA+TGG | - | Chr3:38964469-38964488 | None:intergenic | 35.0% |
| ! | TTCACAGGGAGAAATTTTTG+GGG | - | Chr3:38965615-38965634 | None:intergenic | 35.0% |
| !! | AGTATTTTGAAGGAACTGGA+AGG | - | Chr3:38964143-38964162 | None:intergenic | 35.0% |
| !! | TAGTGACTTTGGAATAATCC+AGG | + | Chr3:38964672-38964691 | MsG0380013471.01.T01:intron | 35.0% |
| !! | TGTGAGTATTTTGAAGGAAC+TGG | - | Chr3:38964147-38964166 | None:intergenic | 35.0% |
| !! | TTGAATCTAGTCTTGCATTG+TGG | - | Chr3:38963067-38963086 | None:intergenic | 35.0% |
| AAGAAAGCAAACGGCTAAAG+AGG | + | Chr3:38964852-38964871 | MsG0380013471.01.T01:intron | 40.0% | |
| AAGAGGATTACTGGTGCTTA+TGG | - | Chr3:38964398-38964417 | None:intergenic | 40.0% | |
| AAGATGGAAGGAATGGAAAC+AGG | + | Chr3:38962111-38962130 | MsG0380013471.01.T01:exon | 40.0% | |
| AAGGAATTCTATCGGTCAAG+AGG | - | Chr3:38964415-38964434 | None:intergenic | 40.0% | |
| AAGGGAAATAATGCTAAGGC+AGG | + | Chr3:38963254-38963273 | MsG0380013471.01.T01:intron | 40.0% | |
| AATGAGGTCAAGTATGGTCA+AGG | + | Chr3:38963235-38963254 | MsG0380013471.01.T01:intron | 40.0% | |
| ACAGTTGTCCATTTGTGAGA+TGG | - | Chr3:38963346-38963365 | None:intergenic | 40.0% | |
| AGATGGAAGAAGAAGATGGA+AGG | + | Chr3:38962099-38962118 | MsG0380013471.01.T01:exon | 40.0% | |
| AGATGGAAGGAATGGAAACA+GGG | + | Chr3:38962112-38962131 | MsG0380013471.01.T01:exon | 40.0% | |
| AGTTGTCCATTTGTGAGATG+GGG | - | Chr3:38963344-38963363 | None:intergenic | 40.0% | |
| ATGAGGTCAAGTATGGTCAA+GGG | + | Chr3:38963236-38963255 | MsG0380013471.01.T01:intron | 40.0% | |
| ATTATTACCGGTGTCCTGTT+AGG | + | Chr3:38964551-38964570 | MsG0380013471.01.T01:intron | 40.0% | |
| CAAAATCCCCATCTCACAAA+TGG | + | Chr3:38963335-38963354 | MsG0380013471.01.T01:intron | 40.0% | |
| CAAACTACATCAGGTCCTTT+GGG | + | Chr3:38963935-38963954 | MsG0380013471.01.T01:CDS | 40.0% | |
| CAATCTGTGCAAACTACATC+AGG | + | Chr3:38963926-38963945 | MsG0380013471.01.T01:CDS | 40.0% | |
| CAGTTGTCCATTTGTGAGAT+GGG | - | Chr3:38963345-38963364 | None:intergenic | 40.0% | |
| GAAAAAGGAGTTGGAGTTCA+TGG | - | Chr3:38964905-38964924 | None:intergenic | 40.0% | |
| GAAATAATGCTAAGGCAGGA+TGG | + | Chr3:38963258-38963277 | MsG0380013471.01.T01:intron | 40.0% | |
| GAAGAAGAAGATGGAAGGAA+TGG | + | Chr3:38962104-38962123 | MsG0380013471.01.T01:exon | 40.0% | |
| GACAAAGGCTGTTGATGTAA+TGG | - | Chr3:38965172-38965191 | None:intergenic | 40.0% | |
| GAGAAGATGGAAGAAGAAGA+TGG | + | Chr3:38962095-38962114 | MsG0380013471.01.T01:exon | 40.0% | |
| GGGGATAAAATGATGTTTGG+TGG | - | Chr3:38965596-38965615 | None:intergenic | 40.0% | |
| GGTCAAGGGAAATAATGCTA+AGG | + | Chr3:38963250-38963269 | MsG0380013471.01.T01:intron | 40.0% | |
| GTATGGAGGTGAGTTACTAT+CGG | + | Chr3:38966113-38966132 | MsG0380013471.01.T01:three_prime_UTR | 40.0% | |
| TAGAATCTCAACATGGTAGC+GGG | + | Chr3:38962021-38962040 | MsG0380013471.01.T01:five_prime_UTR | 40.0% | |
| TAGCCGTTTGCTTTCTTTGT+CGG | - | Chr3:38964849-38964868 | None:intergenic | 40.0% | |
| TATGTTGATCCAAAGCAACC+AGG | + | Chr3:38963986-38964005 | MsG0380013471.01.T01:CDS | 40.0% | |
| TCATGGCAAATTCTGATGAG+AGG | - | Chr3:38963140-38963159 | None:intergenic | 40.0% | |
| TCTTGCATTGTGGACATGAT+TGG | - | Chr3:38963057-38963076 | None:intergenic | 40.0% | |
| TGAGTATCAGAAGTAGCACA+TGG | - | Chr3:38963908-38963927 | None:intergenic | 40.0% | |
| TGCCATGAACAAGATGAATG+TGG | + | Chr3:38963152-38963171 | MsG0380013471.01.T01:intron | 40.0% | |
| TGTCGACGATTTAAGGAATG+AGG | + | Chr3:38963219-38963238 | MsG0380013471.01.T01:CDS | 40.0% | |
| ! | AAAGGCATACTTGAGTGACT+TGG | + | Chr3:38965038-38965057 | MsG0380013471.01.T01:CDS | 40.0% |
| ! | AACTTGTTCGAGCTAGACAT+GGG | + | Chr3:38962151-38962170 | MsG0380013471.01.T01:CDS | 40.0% |
| ! | ACACAATGATGACGAGACAA+AGG | - | Chr3:38965187-38965206 | None:intergenic | 40.0% |
| ! | ACATTTTCGGATTGACCCAA+AGG | - | Chr3:38963953-38963972 | None:intergenic | 40.0% |
| ! | ACGGGACATGTAATTGACTT+TGG | + | Chr3:38965953-38965972 | MsG0380013471.01.T01:three_prime_UTR | 40.0% |
| ! | CTTCAGATTGAAAGCATGTC+CGG | + | Chr3:38964482-38964501 | MsG0380013471.01.T01:intron | 40.0% |
| ! | GCTCTGAATTCTTCTTCTCT+AGG | - | Chr3:38965080-38965099 | None:intergenic | 40.0% |
| ! | GTTTGTGGTTCTGTTTGGAT+CGG | + | Chr3:38962599-38962618 | MsG0380013471.01.T01:intron | 40.0% |
| ! | TGGTTGCTTTGGATCAACAT+AGG | - | Chr3:38963987-38964006 | None:intergenic | 40.0% |
| !! | AAGGTTAGCTTGTGATCACA+TGG | + | Chr3:38963095-38963114 | MsG0380013471.01.T01:intron | 40.0% |
| !! | AGACATGGGTTTCTGAAACT+GGG | + | Chr3:38962165-38962184 | MsG0380013471.01.T01:CDS | 40.0% |
| !! | AGGTTAGCTTGTGATCACAT+GGG | + | Chr3:38963096-38963115 | MsG0380013471.01.T01:intron | 40.0% |
| !! | ATCAGAAGAGTGCCAGATAT+GGG | + | Chr3:38964714-38964733 | MsG0380013471.01.T01:CDS | 40.0% |
| !! | GTGAAGCACTGACATGAAAA+CGG | + | Chr3:38965934-38965953 | MsG0380013471.01.T01:three_prime_UTR | 40.0% |
| !! | GTGAGTTTCTGAAATAGTCG+AGG | - | Chr3:38964362-38964381 | None:intergenic | 40.0% |
| !! | TAGACATGGGTTTCTGAAAC+TGG | + | Chr3:38962164-38962183 | MsG0380013471.01.T01:CDS | 40.0% |
| !! | TGAAGCACTGACATGAAAAC+GGG | + | Chr3:38965935-38965954 | MsG0380013471.01.T01:three_prime_UTR | 40.0% |
| AACTCTGTACCTGGTTGCTT+TGG | - | Chr3:38963998-38964017 | None:intergenic | 45.0% | |
| ACTGTTGGATTAACAGCCAC+CGG | + | Chr3:38962953-38962972 | MsG0380013471.01.T01:CDS | 45.0% | |
| AGAACCACAAACACTCCTAC+AGG | - | Chr3:38962591-38962610 | None:intergenic | 45.0% | |
| AGGGGTGGAAGAGTAAAGTA+AGG | - | Chr3:38965572-38965591 | None:intergenic | 45.0% | |
| ATGGGTGAGTACTACACAAC+AGG | - | Chr3:38964450-38964469 | None:intergenic | 45.0% | |
| CAGCCGACAAAGAAAGCAAA+CGG | + | Chr3:38964843-38964862 | MsG0380013471.01.T01:intron | 45.0% | |
| CATGTCCAGAAGATGAAGAG+AGG | - | Chr3:38963304-38963323 | None:intergenic | 45.0% | |
| CATTGACATGGACACCTAAC+AGG | - | Chr3:38964568-38964587 | None:intergenic | 45.0% | |
| CTAGTCTCAATTGCCTGACA+CGG | - | Chr3:38962682-38962701 | None:intergenic | 45.0% | |
| CTATCGGTCAAGAGGATTAC+TGG | - | Chr3:38964407-38964426 | None:intergenic | 45.0% | |
| CTTTACGAGAGCTGATGTTC+CGG | - | Chr3:38964751-38964770 | None:intergenic | 45.0% | |
| GCAAACTACATCAGGTCCTT+TGG | + | Chr3:38963934-38963953 | MsG0380013471.01.T01:CDS | 45.0% | |
| GGTGGAAGAGTAAAGTAAGG+AGG | - | Chr3:38965569-38965588 | None:intergenic | 45.0% | |
| TAGTCTCAATTGCCTGACAC+GGG | - | Chr3:38962681-38962700 | None:intergenic | 45.0% | |
| TCAGATGATCCTCGTGTGAA+GGG | + | Chr3:38963178-38963197 | MsG0380013471.01.T01:intron | 45.0% | |
| TGAAGAACACTACAGCTAGC+AGG | + | Chr3:38965694-38965713 | MsG0380013471.01.T01:CDS | 45.0% | |
| TGGAAACAGGGTCACATGAA+AGG | + | Chr3:38962124-38962143 | MsG0380013471.01.T01:CDS | 45.0% | |
| TTCAGATGATCCTCGTGTGA+AGG | + | Chr3:38963177-38963196 | MsG0380013471.01.T01:intron | 45.0% | |
| TTTCAGGCTAACTCTGTACC+TGG | - | Chr3:38964007-38964026 | None:intergenic | 45.0% | |
| ! | GAACTTGTTCGAGCTAGACA+TGG | + | Chr3:38962150-38962169 | MsG0380013471.01.T01:CDS | 45.0% |
| ! | GGAGTGTTTGTGGTTCTGTT+TGG | + | Chr3:38962594-38962613 | MsG0380013471.01.T01:intron | 45.0% |
| ! | GGCACGTGAGTGAACATTTT+CGG | - | Chr3:38963966-38963985 | None:intergenic | 45.0% |
| ! | GTTTGCTTTCTTTGTCGGCT+GGG | - | Chr3:38964844-38964863 | None:intergenic | 45.0% |
| ! | TCTGTAAAGCATCCCTGTCA+TGG | + | Chr3:38965216-38965235 | MsG0380013471.01.T01:intron | 45.0% |
| !! | GACATGGGTTTCTGAAACTG+GGG | + | Chr3:38962166-38962185 | MsG0380013471.01.T01:CDS | 45.0% |
| !! | GATCAGAAGAGTGCCAGATA+TGG | + | Chr3:38964713-38964732 | MsG0380013471.01.T01:CDS | 45.0% |
| !! | GTTCTGTTTGGATCGGTTTG+AGG | + | Chr3:38962606-38962625 | MsG0380013471.01.T01:intron | 45.0% |
| AAAGTGGGAAGGAACACTCG+TGG | - | Chr3:38962997-38963016 | None:intergenic | 50.0% | |
| AACACTACAGCTAGCAGGAG+AGG | + | Chr3:38965699-38965718 | MsG0380013471.01.T01:CDS | 50.0% | |
| ATGCTAAGGCAGGATGGCAA+TGG | + | Chr3:38963264-38963283 | MsG0380013471.01.T01:intron | 50.0% | |
| ATGGACACCTAACAGGACAC+CGG | - | Chr3:38964561-38964580 | None:intergenic | 50.0% | |
| CAAGCAAGGAGAGGAGGAAA+AGG | + | Chr3:38965020-38965039 | MsG0380013471.01.T01:CDS | 50.0% | |
| CGGAACATCAGCTCTCGTAA+AGG | + | Chr3:38964749-38964768 | MsG0380013471.01.T01:CDS | 50.0% | |
| CGTGTCAGGCAATTGAGACT+AGG | + | Chr3:38962680-38962699 | MsG0380013471.01.T01:intron | 50.0% | |
| CGTTTGCTTTCTTTGTCGGC+TGG | - | Chr3:38964845-38964864 | None:intergenic | 50.0% | |
| GAGTTTCAGCTCAGCAAGCA+AGG | + | Chr3:38965006-38965025 | MsG0380013471.01.T01:intron | 50.0% | |
| GATATGGGAGGTGAATCTGC+CGG | + | Chr3:38964729-38964748 | MsG0380013471.01.T01:CDS | 50.0% | |
| GCAAGCAACAAAGACTTCGC+CGG | - | Chr3:38962975-38962994 | None:intergenic | 50.0% | |
| GCAGATTCACCTCCCATATC+TGG | - | Chr3:38964729-38964748 | None:intergenic | 50.0% | |
| GCTGACCTCTCTTCATCTTC+TGG | + | Chr3:38963296-38963315 | MsG0380013471.01.T01:intron | 50.0% | |
| GGAGAGGGTCAAAAGAAGAG+AGG | + | Chr3:38964812-38964831 | MsG0380013471.01.T01:intron | 50.0% | |
| TGCTAAGGCAGGATGGCAAT+GGG | + | Chr3:38963265-38963284 | MsG0380013471.01.T01:intron | 50.0% | |
| ! | ATCAGCTCTCGTAAAGGCAC+TGG | + | Chr3:38964755-38964774 | MsG0380013471.01.T01:CDS | 50.0% |
| ! | ATGATGTTTGGTGGAAGGGG+TGG | - | Chr3:38965587-38965606 | None:intergenic | 50.0% |
| ! | CACGTGTCATTGTCAGACAC+CGG | - | Chr3:38964504-38964523 | None:intergenic | 50.0% |
| !! | AAAGGCACTGGTTCAACTGC+TGG | + | Chr3:38964767-38964786 | MsG0380013471.01.T01:intron | 50.0% |
| !! | AGAAGAGTGCCAGATATGGG+AGG | + | Chr3:38964717-38964736 | MsG0380013471.01.T01:CDS | 50.0% |
| !! | GTCACCTGTAGGAGTGTTTG+TGG | + | Chr3:38962584-38962603 | MsG0380013471.01.T01:intron | 50.0% |
| !! | TGGGTTTCTGAAACTGGGGT+TGG | + | Chr3:38962170-38962189 | MsG0380013471.01.T01:intron | 50.0% |
| AGCAACAAAGACTTCGCCGG+TGG | - | Chr3:38962972-38962991 | None:intergenic | 55.0% | |
| GATGATCCTCGTGTGAAGGG+AGG | + | Chr3:38963181-38963200 | MsG0380013471.01.T01:intron | 55.0% | |
| GCTAGCAGGAGAGGAAGCAA+CGG | + | Chr3:38965708-38965727 | MsG0380013471.01.T01:CDS | 55.0% | |
| GCTGGTCCAGAACGTGTTCA+GGG | + | Chr3:38964785-38964804 | MsG0380013471.01.T01:intron | 55.0% | |
| GGTTTGTAGAAGCCCGTGTC+AGG | + | Chr3:38962666-38962685 | MsG0380013471.01.T01:intron | 55.0% | |
| TCAGCTCAGCAAGCAAGGAG+AGG | + | Chr3:38965011-38965030 | MsG0380013471.01.T01:intron | 55.0% | |
| TCATCACCTCCCTTCACACG+AGG | - | Chr3:38963190-38963209 | None:intergenic | 55.0% | |
| TCCAGGTCTTGAGAGTGACG+AGG | + | Chr3:38964689-38964708 | MsG0380013471.01.T01:intron | 55.0% | |
| TCCTCGTCACTCTCAAGACC+TGG | - | Chr3:38964693-38964712 | None:intergenic | 55.0% | |
| TGCTGGTCCAGAACGTGTTC+AGG | + | Chr3:38964784-38964803 | MsG0380013471.01.T01:intron | 55.0% | |
| AGCAGGAGAGGAAGCAACGG+TGG | + | Chr3:38965711-38965730 | MsG0380013471.01.T01:CDS | 60.0% | |
| CCAGAACGTGTTCAGGGTGC+TGG | + | Chr3:38964791-38964810 | MsG0380013471.01.T01:intron | 60.0% | |
| CCAGCACCCTGAACACGTTC+TGG | - | Chr3:38964794-38964813 | None:intergenic | 60.0% | |
| GCTCAGCAAGCAAGGAGAGG+AGG | + | Chr3:38965014-38965033 | MsG0380013471.01.T01:intron | 60.0% | |
| !! | ACGTGTTCAGGGTGCTGGAG+AGG | + | Chr3:38964796-38964815 | MsG0380013471.01.T01:intron | 60.0% |
| !! | CGTGTTCAGGGTGCTGGAGA+GGG | + | Chr3:38964797-38964816 | MsG0380013471.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 38961990 | 38966237 | 38961990 | ID=MsG0380013471.01;Name=MsG0380013471.01 |
| Chr3 | mRNA | 38961990 | 38966237 | 38961990 | ID=MsG0380013471.01.T01;Parent=MsG0380013471.01;Name=MsG0380013471.01.T01;_AED=0.27;_eAED=0.27;_QI=124|0.5|0.28|1|0.83|0.71|7|485|289 |
| Chr3 | exon | 38961990 | 38962187 | 38961990 | ID=MsG0380013471.01.T01:exon:26985;Parent=MsG0380013471.01.T01 |
| Chr3 | exon | 38962760 | 38963097 | 38962760 | ID=MsG0380013471.01.T01:exon:26986;Parent=MsG0380013471.01.T01 |
| Chr3 | exon | 38963182 | 38963240 | 38963182 | ID=MsG0380013471.01.T01:exon:26987;Parent=MsG0380013471.01.T01 |
| Chr3 | exon | 38963890 | 38964007 | 38963890 | ID=MsG0380013471.01.T01:exon:26988;Parent=MsG0380013471.01.T01 |
| Chr3 | exon | 38964694 | 38964776 | 38964694 | ID=MsG0380013471.01.T01:exon:26989;Parent=MsG0380013471.01.T01 |
| Chr3 | exon | 38965015 | 38965149 | 38965015 | ID=MsG0380013471.01.T01:exon:26990;Parent=MsG0380013471.01.T01 |
| Chr3 | exon | 38965690 | 38966237 | 38965690 | ID=MsG0380013471.01.T01:exon:26991;Parent=MsG0380013471.01.T01 |
| Chr3 | five_prime_UTR | 38961990 | 38962113 | 38961990 | ID=MsG0380013471.01.T01:five_prime_utr;Parent=MsG0380013471.01.T01 |
| Chr3 | CDS | 38962114 | 38962187 | 38962114 | ID=MsG0380013471.01.T01:cds;Parent=MsG0380013471.01.T01 |
| Chr3 | CDS | 38962760 | 38963097 | 38962760 | ID=MsG0380013471.01.T01:cds;Parent=MsG0380013471.01.T01 |
| Chr3 | CDS | 38963182 | 38963240 | 38963182 | ID=MsG0380013471.01.T01:cds;Parent=MsG0380013471.01.T01 |
| Chr3 | CDS | 38963890 | 38964007 | 38963890 | ID=MsG0380013471.01.T01:cds;Parent=MsG0380013471.01.T01 |
| Chr3 | CDS | 38964694 | 38964776 | 38964694 | ID=MsG0380013471.01.T01:cds;Parent=MsG0380013471.01.T01 |
| Chr3 | CDS | 38965015 | 38965149 | 38965015 | ID=MsG0380013471.01.T01:cds;Parent=MsG0380013471.01.T01 |
| Chr3 | CDS | 38965690 | 38965752 | 38965690 | ID=MsG0380013471.01.T01:cds;Parent=MsG0380013471.01.T01 |
| Chr3 | three_prime_UTR | 38965753 | 38966237 | 38965753 | ID=MsG0380013471.01.T01:three_prime_utr;Parent=MsG0380013471.01.T01 |
| Gene Sequence |
| Protein sequence |
