AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016740.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016740.01.T01 MTR_3g094300 97.203 286 8 0 1 286 1 286 0.0 588
MsG0380016740.01.T01 MTR_1g090867 45.745 188 95 3 66 247 68 254 7.28e-44 153
MsG0380016740.01.T01 MTR_7g034465 34.766 256 142 7 2 247 141 381 8.59e-31 120
MsG0380016740.01.T01 MTR_7g034465 39.773 176 104 2 72 247 314 487 2.28e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016740.01.T01 AT3G10940 72.348 264 66 3 28 286 21 282 7.92e-141 398
MsG0380016740.01.T01 AT3G52180 42.927 205 115 2 65 268 66 269 1.80e-46 157
MsG0380016740.01.T01 AT3G52180 42.927 205 115 2 65 268 66 269 3.61e-46 157
MsG0380016740.01.T01 AT3G52180 42.927 205 115 2 65 268 66 269 4.85e-45 156
MsG0380016740.01.T01 AT3G52180 44.571 175 95 2 95 268 1 174 2.68e-39 139
MsG0380016740.01.T01 AT3G01510 35.983 239 144 5 9 247 69 298 2.50e-32 124
MsG0380016740.01.T01 AT3G01510 35.983 239 144 5 9 247 69 298 2.50e-32 124
MsG0380016740.01.T01 AT3G01510 35.983 239 144 5 9 247 211 440 9.13e-32 124

Find 75 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTATCAATTACTCTATT+AGG 0.200564 3:-87259074 MsG0380016740.01.T01:CDS
TCAATACTACATGGAATATT+TGG 0.229020 3:+87255937 None:intergenic
GGAATATTTGGTACCGTTAC+AGG 0.236510 3:+87255949 None:intergenic
TGACAATTGCTTATTTGTTC+TGG 0.251643 3:-87257097 MsG0380016740.01.T01:CDS
TTCAACATTCAGAGCTTCTT+TGG 0.262998 3:-87259151 MsG0380016740.01.T01:CDS
ATCTAAATCTAATGATTTAA+TGG 0.263330 3:-87258986 MsG0380016740.01.T01:CDS
AGTCTTCCAGACCATGCTTT+TGG 0.273596 3:-87256270 MsG0380016740.01.T01:CDS
TCTAAGGATGACACTGCTTT+AGG 0.291760 3:+87257191 None:intergenic
TTAAGGTGATCTACATCTTC+AGG 0.294100 3:+87257853 None:intergenic
CTCAGAAATTGCCCATTCTA+AGG 0.297875 3:+87257175 None:intergenic
GATTGACAGGTCAGTGCTTA+TGG 0.313968 3:-87256082 MsG0380016740.01.T01:intron
CCACACCTTCTTCCTTCTTA+AGG 0.313968 3:+87257836 None:intergenic
AGGATAAGGATGCTGAGTTT+TGG 0.315172 3:-87257792 MsG0380016740.01.T01:CDS
ATCTTCAGGTTTCTGTGGTT+GGG 0.320424 3:+87257867 None:intergenic
AGTGCACTTCGCAAAGAGTT+TGG 0.350408 3:+87257215 None:intergenic
CATCTTCAGGTTTCTGTGGT+TGG 0.355320 3:+87257866 None:intergenic
ACAAGGAGCAACTTATGATT+TGG 0.358184 3:-87256325 MsG0380016740.01.T01:CDS
AGAACAGAATTTAGATTCAA+TGG 0.367500 3:+87255829 None:intergenic
CTTTGAAGTTAGCATATCAT+AGG 0.392022 3:+87256377 None:intergenic
ATATTCCATGTAGTATTGAT+TGG 0.399152 3:-87255933 MsG0380016740.01.T01:three_prime_UTR
TCTAAACTTGCAACAGGATA+AGG 0.402340 3:-87257806 MsG0380016740.01.T01:CDS
GCATATTTATATAGATATAT+AGG 0.402680 3:-87255979 MsG0380016740.01.T01:three_prime_UTR
AACCGTGTCCGCGCTCTTCG+TGG 0.426634 3:-87256213 MsG0380016740.01.T01:CDS
TTATGAGTATCATCACGATC+TGG 0.441184 3:-87258923 MsG0380016740.01.T01:CDS
AGATTTAGATACCCTCTTGC+TGG 0.449666 3:+87258999 None:intergenic
ATATATTCTAAACTTGCAAC+AGG 0.450710 3:-87257812 MsG0380016740.01.T01:CDS
AGATCGTGATGATACTCATA+AGG 0.451970 3:+87258925 None:intergenic
AAGCAGTGTCATCCTTAGAA+TGG 0.458306 3:-87257187 MsG0380016740.01.T01:CDS
CTCTCAAATGGCTCCTTCCA+TGG 0.458673 3:+87256291 None:intergenic
TTTGTTGTACACTATCAGAA+AGG 0.464043 3:-87259041 MsG0380016740.01.T01:CDS
AAATAAGCAATTGTCACTGC+TGG 0.476094 3:+87257104 None:intergenic
ATAACTGACAATTTGATTGT+GGG 0.477333 3:-87257892 MsG0380016740.01.T01:CDS
TTGTTGTACACTATCAGAAA+GGG 0.479495 3:-87259040 MsG0380016740.01.T01:CDS
ATATCCCCAAAAGCATGGTC+TGG 0.485767 3:+87256264 None:intergenic
TATAACTGACAATTTGATTG+TGG 0.487738 3:-87257893 MsG0380016740.01.T01:CDS
CAAATAATAAATCAACTTTG+TGG 0.488165 3:-87255910 MsG0380016740.01.T01:three_prime_UTR
AAATCTACATTCTACAATCA+TGG 0.497529 3:+87255879 None:intergenic
TTCGTGGAACCTGACGAATT+AGG 0.502926 3:-87256197 MsG0380016740.01.T01:intron
GTTTATGTGCACTGTACTGC+AGG 0.506912 3:-87257140 MsG0380016740.01.T01:CDS
GAATTTAGATTCAATGGAAG+AGG 0.507146 3:+87255835 None:intergenic
AGCAGTGTCATCCTTAGAAT+GGG 0.512745 3:-87257186 MsG0380016740.01.T01:CDS
GGGATATAGCAGATTGGGAG+AGG 0.512919 3:-87256248 MsG0380016740.01.T01:CDS
ATGGAAAGTGTAAGTAACAT+TGG 0.515333 3:-87259180 MsG0380016740.01.T01:CDS
GATCGTGATGATACTCATAA+GGG 0.517872 3:+87258926 None:intergenic
TGGGCAATTTCTGAGGGAAA+AGG 0.518950 3:-87257167 MsG0380016740.01.T01:CDS
TGGTCTGGAAGACTCTCAAA+TGG 0.522030 3:+87256279 None:intergenic
AGACTAATACCTAATTCGTC+AGG 0.528930 3:+87256188 None:intergenic
CTTAGAATGGGCAATTTCTG+AGG 0.532588 3:-87257174 MsG0380016740.01.T01:CDS
TCTACATCTTCAGGTTTCTG+TGG 0.534119 3:+87257862 None:intergenic
TATGAGTATCATCACGATCT+GGG 0.535409 3:-87258922 MsG0380016740.01.T01:intron
GTGCACTGTACTGCAGGACT+TGG 0.536912 3:-87257134 MsG0380016740.01.T01:CDS
ATTCTACAATCATGGTACAT+AGG 0.555160 3:+87255887 None:intergenic
ATTTGCCAATCAATACTACA+TGG 0.557524 3:+87255928 None:intergenic
GATCACCTTAAGAAGGAAGA+AGG 0.559918 3:-87257841 MsG0380016740.01.T01:CDS
AAAAGAACAACAACTTGTGT+AGG 0.570717 3:+87256054 None:intergenic
CCAAATAAAAGAGCAATACA+AGG 0.573394 3:-87256342 MsG0380016740.01.T01:CDS
TTAGAATGGGCAATTTCTGA+GGG 0.579734 3:-87257173 MsG0380016740.01.T01:CDS
TAACTGACAATTTGATTGTG+GGG 0.583931 3:-87257891 MsG0380016740.01.T01:CDS
AGATGTAGATCACCTTAAGA+AGG 0.584321 3:-87257848 MsG0380016740.01.T01:CDS
TTCCACGAAGAGCGCGGACA+CGG 0.585377 3:+87256211 None:intergenic
TAGCTATGAAGAAGATGATG+AGG 0.589831 3:-87258951 MsG0380016740.01.T01:CDS
CTGCTATATCCCCAAAAGCA+TGG 0.592436 3:+87256259 None:intergenic
TTAGATACCCTCTTGCTGGT+AGG 0.594440 3:+87259003 None:intergenic
TCAAACAAGCAAAAGAACAA+TGG 0.598043 3:-87259199 None:intergenic
CAAAAGTACTTTCAAAGCAG+AGG 0.607347 3:-87259125 MsG0380016740.01.T01:CDS
TATAGGTATATTGCCTGTAA+CGG 0.611860 3:-87255962 MsG0380016740.01.T01:three_prime_UTR
ATAGAAACCATAAAACTGCA+TGG 0.618576 3:+87259090 None:intergenic
CCTTAAGAAGGAAGAAGGTG+TGG 0.624960 3:-87257836 MsG0380016740.01.T01:CDS
AAGAGAATCCTACCAGCAAG+AGG 0.628874 3:-87259011 MsG0380016740.01.T01:CDS
GTTGTACACTATCAGAAAGG+GGG 0.629451 3:-87259038 MsG0380016740.01.T01:CDS
TGTTGTACACTATCAGAAAG+GGG 0.630282 3:-87259039 MsG0380016740.01.T01:CDS
GTCAGGTTCCACGAAGAGCG+CGG 0.664911 3:+87256205 None:intergenic
AGAGAATCCTACCAGCAAGA+GGG 0.665221 3:-87259010 MsG0380016740.01.T01:CDS
CTAACTTCAAAGAGACCTTG+TGG 0.666372 3:-87256366 MsG0380016740.01.T01:CDS
AACTTGAAATTAGACACATG+AGG 0.731891 3:-87257732 MsG0380016740.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAATGAAAAATAAT+TGG + Chr3:87257035-87257054 None:intergenic 10.0%
!!! ATCACATTTTTTAAAAAATT+GGG + Chr3:87257528-87257547 None:intergenic 10.0%
!!! CTATTTATTTTCATAAAAAA+AGG + Chr3:87258472-87258491 None:intergenic 10.0%
!!! TATCACATTTTTTAAAAAAT+TGG + Chr3:87257529-87257548 None:intergenic 10.0%
!!! TTTTGTTTATTTACATTATT+AGG - Chr3:87257770-87257789 MsG0380016740.01.T01:CDS 10.0%
!! ATCTAAATCTAATGATTTAA+TGG - Chr3:87256036-87256055 MsG0380016740.01.T01:three_prime_UTR 15.0%
!! GCATATTTATATAGATATAT+AGG - Chr3:87259043-87259062 MsG0380016740.01.T01:CDS 15.0%
!!! AAAAATAATTGGTTTTCTTA+GGG + Chr3:87257024-87257043 None:intergenic 15.0%
!!! AAATTTTTCACAAATGAATA+TGG - Chr3:87258593-87258612 MsG0380016740.01.T01:intron 15.0%
!!! AGAAAAACATATTTTGAAAT+TGG - Chr3:87256516-87256535 MsG0380016740.01.T01:intron 15.0%
!!! TCACATTTTTTAAAAAATTG+GGG + Chr3:87257527-87257546 None:intergenic 15.0%
!! AATTGAATTTACATCGAAAT+TGG + Chr3:87256160-87256179 None:intergenic 20.0%
!! CAAATAATAAATCAACTTTG+TGG - Chr3:87259112-87259131 MsG0380016740.01.T01:CDS 20.0%
!! CTAAATTAATGTACCAAAAA+GGG + Chr3:87257332-87257351 None:intergenic 20.0%
!! GAAATTATTATCATTTGAAG+TGG + Chr3:87257498-87257517 None:intergenic 20.0%
!! TAAATTAATGTACCAAAAAG+GGG + Chr3:87257331-87257350 None:intergenic 20.0%
!! TATAATTCATACCTGAAATT+AGG + Chr3:87257105-87257124 None:intergenic 20.0%
!! TCTAAATTAATGTACCAAAA+AGG + Chr3:87257333-87257352 None:intergenic 20.0%
!! TTTCTATCAATTACTCTATT+AGG - Chr3:87255948-87255967 MsG0380016740.01.T01:three_prime_UTR 20.0%
!!! GAAAAATAATTGGTTTTCTT+AGG + Chr3:87257025-87257044 None:intergenic 20.0%
!!! TATAGTTTTCGAGTTTATAA+AGG - Chr3:87256489-87256508 MsG0380016740.01.T01:intron 20.0%
!!! TTGACTGTTTTATATAACAA+AGG + Chr3:87258322-87258341 None:intergenic 20.0%
!!! TTTTTAAAAAATTGGGGAAA+GGG + Chr3:87257521-87257540 None:intergenic 20.0%
!!! TTTTTTAAAAAATTGGGGAA+AGG + Chr3:87257522-87257541 None:intergenic 20.0%
! AAACAAGATACTATTGGAAT+GGG + Chr3:87256666-87256685 None:intergenic 25.0%
! AAATCTACATTCTACAATCA+TGG + Chr3:87259146-87259165 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG + Chr3:87258226-87258245 None:intergenic 25.0%
! AGAAAAGACACTATAAATCA+GGG - Chr3:87258109-87258128 MsG0380016740.01.T01:intron 25.0%
! AGAACAGAATTTAGATTCAA+TGG + Chr3:87259196-87259215 None:intergenic 25.0%
! ATAACTGACAATTTGATTGT+GGG - Chr3:87257130-87257149 MsG0380016740.01.T01:CDS 25.0%
! ATAGGAATGAATGAAATTGT+TGG - Chr3:87256228-87256247 MsG0380016740.01.T01:CDS 25.0%
! ATAGGTTGTATTAGGAAATA+GGG - Chr3:87257580-87257599 MsG0380016740.01.T01:intron 25.0%
! ATATATTCTAAACTTGCAAC+AGG - Chr3:87257210-87257229 MsG0380016740.01.T01:CDS 25.0%
! GAAAGCAACTTATATGAAAA+TGG + Chr3:87256787-87256806 None:intergenic 25.0%
! GTCTTTATACACTAAAATTG+TGG - Chr3:87256552-87256571 MsG0380016740.01.T01:intron 25.0%
! TAAGTTATATATCCCATACA+GGG - Chr3:87258533-87258552 MsG0380016740.01.T01:intron 25.0%
! TAATTCAATCAAGAACAAGT+CGG + Chr3:87257741-87257760 None:intergenic 25.0%
! TAGAAAAGACACTATAAATC+AGG - Chr3:87258108-87258127 MsG0380016740.01.T01:intron 25.0%
! TATAACTGACAATTTGATTG+TGG - Chr3:87257129-87257148 MsG0380016740.01.T01:CDS 25.0%
! TCAATACTACATGGAATATT+TGG + Chr3:87259088-87259107 None:intergenic 25.0%
! TCATATAAGCAAATCAAAAC+AGG + Chr3:87258135-87258154 None:intergenic 25.0%
! TTAAGTTATATATCCCATAC+AGG - Chr3:87258532-87258551 MsG0380016740.01.T01:intron 25.0%
! TTAGCTGTGCAAAAAATAAA+AGG + Chr3:87258619-87258638 None:intergenic 25.0%
! TTATCCAAACAAGATACTAT+TGG + Chr3:87256672-87256691 None:intergenic 25.0%
!! ACTTTTACAATTCATGTGAA+TGG - Chr3:87256998-87257017 MsG0380016740.01.T01:intron 25.0%
!! ATAGAAGTATAGAACTACAA+AGG - Chr3:87256287-87256306 MsG0380016740.01.T01:CDS 25.0%
!! TCTCCATTTCTTTTCAAAAT+TGG + Chr3:87256459-87256478 None:intergenic 25.0%
!!! ATATTCCATGTAGTATTGAT+TGG - Chr3:87259089-87259108 MsG0380016740.01.T01:CDS 25.0%
!!! TGTTTTGATTTGCTTATATG+AGG - Chr3:87258134-87258153 MsG0380016740.01.T01:intron 25.0%
!!! TGTTTTTTGATTCAAAGACA+AGG + Chr3:87257984-87258003 None:intergenic 25.0%
!!! TTTTAAAAAATTGGGGAAAG+GGG + Chr3:87257520-87257539 None:intergenic 25.0%
!!! TTTTTTTCCTTCATTGCATT+TGG - Chr3:87256318-87256337 MsG0380016740.01.T01:CDS 25.0%
AAAAGAACAACAACTTGTGT+AGG + Chr3:87258971-87258990 None:intergenic 30.0%
AACTTGAAATTAGACACATG+AGG - Chr3:87257290-87257309 MsG0380016740.01.T01:intron 30.0%
ACAACCTCTTGTAAAAAAAC+AGG - Chr3:87258364-87258383 MsG0380016740.01.T01:intron 30.0%
ACTAAACATGTTTGTAGCAT+AGG - Chr3:87257562-87257581 MsG0380016740.01.T01:intron 30.0%
AGATTGTTTGGAAGAGTTTA+TGG - Chr3:87258182-87258201 MsG0380016740.01.T01:intron 30.0%
ATAGAAACCATAAAACTGCA+TGG + Chr3:87255935-87255954 None:intergenic 30.0%
ATTCTACAATCATGGTACAT+AGG + Chr3:87259138-87259157 None:intergenic 30.0%
ATTTGCCAATCAATACTACA+TGG + Chr3:87259097-87259116 None:intergenic 30.0%
ATTTGGCTAAAAATGATCCA+TGG - Chr3:87258714-87258733 MsG0380016740.01.T01:intron 30.0%
CAAACAAGATACTATTGGAA+TGG + Chr3:87256667-87256686 None:intergenic 30.0%
CAAATTTATAGTTCAAGTCC+TGG - Chr3:87258339-87258358 MsG0380016740.01.T01:intron 30.0%
CAACCTCTTGTAAAAAAACA+GGG - Chr3:87258365-87258384 MsG0380016740.01.T01:intron 30.0%
CAATTTAAATGCACACTTCA+AGG - Chr3:87257623-87257642 MsG0380016740.01.T01:intron 30.0%
CATAGGTTGTATTAGGAAAT+AGG - Chr3:87257579-87257598 MsG0380016740.01.T01:intron 30.0%
CATTCCAATAGTATCTTGTT+TGG - Chr3:87256665-87256684 MsG0380016740.01.T01:intron 30.0%
CCAAATAAAAGAGCAATACA+AGG - Chr3:87258680-87258699 MsG0380016740.01.T01:intron 30.0%
CTTCTATAAACTATCTCAGA+TGG + Chr3:87256815-87256834 None:intergenic 30.0%
CTTGAAACTATTTCAAGAGT+CGG + Chr3:87257702-87257721 None:intergenic 30.0%
CTTGAAGTGTGCATTTAAAT+TGG + Chr3:87257625-87257644 None:intergenic 30.0%
GAATTTAGATTCAATGGAAG+AGG + Chr3:87259190-87259209 None:intergenic 30.0%
TAACTGACAATTTGATTGTG+GGG - Chr3:87257131-87257150 MsG0380016740.01.T01:CDS 30.0%
TAATCACTTGTGAGATTGTT+TGG - Chr3:87258170-87258189 MsG0380016740.01.T01:intron 30.0%
TATAGGTATATTGCCTGTAA+CGG - Chr3:87259060-87259079 MsG0380016740.01.T01:CDS 30.0%
TATGAATACTCTTGAGAGAT+AGG - Chr3:87256210-87256229 MsG0380016740.01.T01:CDS 30.0%
TCGAAATTGGCAAAACAAAT+AGG + Chr3:87256147-87256166 None:intergenic 30.0%
TCTTGTAAAAAAACAGGGTA+AGG - Chr3:87258370-87258389 MsG0380016740.01.T01:intron 30.0%
TGACAATTGCTTATTTGTTC+TGG - Chr3:87257925-87257944 MsG0380016740.01.T01:intron 30.0%
TTGTTGTACACTATCAGAAA+GGG - Chr3:87255982-87256001 MsG0380016740.01.T01:three_prime_UTR 30.0%
TTTGTAGCATAGGTTGTATT+AGG - Chr3:87257572-87257591 MsG0380016740.01.T01:intron 30.0%
! ATGGAAAGTGTAAGTAACAT+TGG - Chr3:87255842-87255861 MsG0380016740.01.T01:three_prime_UTR 30.0%
! CCTTGTATTGCTCTTTTATT+TGG + Chr3:87258683-87258702 None:intergenic 30.0%
! CTGCATAAAGTTTGCATTTT+AGG + Chr3:87256936-87256955 None:intergenic 30.0%
! CTTTTAGATTTAAACCGGAA+GGG - Chr3:87256382-87256401 MsG0380016740.01.T01:CDS 30.0%
! TGTGCCTTTTAGATTTAAAC+CGG - Chr3:87256377-87256396 MsG0380016740.01.T01:CDS 30.0%
! TTTGTTGTACACTATCAGAA+AGG - Chr3:87255981-87256000 MsG0380016740.01.T01:three_prime_UTR 30.0%
!! CTTTGAAGTTAGCATATCAT+AGG + Chr3:87258648-87258667 None:intergenic 30.0%
!! GCTCCAATTTTGAAAAGAAA+TGG - Chr3:87256453-87256472 MsG0380016740.01.T01:intron 30.0%
!! TTTTGATTCAAAGACAAGGT+GGG + Chr3:87257980-87257999 None:intergenic 30.0%
!! TTTTTGATTCAAAGACAAGG+TGG + Chr3:87257981-87258000 None:intergenic 30.0%
!!! TTACCCTGTTTTTTTACAAG+AGG + Chr3:87258371-87258390 None:intergenic 30.0%
!!! TTGCATTTTAGGATCTGTTT+GGG + Chr3:87256925-87256944 None:intergenic 30.0%
!!! TTTGCATTTTAGGATCTGTT+TGG + Chr3:87256926-87256945 None:intergenic 30.0%
AAATAAGCAATTGTCACTGC+TGG + Chr3:87257921-87257940 None:intergenic 35.0%
ACAAGGAGCAACTTATGATT+TGG - Chr3:87258697-87258716 MsG0380016740.01.T01:intron 35.0%
ACACAAACCAAATGCAATGA+AGG + Chr3:87256328-87256347 None:intergenic 35.0%
ACACACAAAATCCAATATCC+TGG + Chr3:87258876-87258895 None:intergenic 35.0%
ACTGTTGCATTAGATTTAGG+TGG - Chr3:87256253-87256272 MsG0380016740.01.T01:CDS 35.0%
AGACTAATACCTAATTCGTC+AGG + Chr3:87258837-87258856 None:intergenic 35.0%
AGATCGTGATGATACTCATA+AGG + Chr3:87256100-87256119 None:intergenic 35.0%
AGATGTAGATCACCTTAAGA+AGG - Chr3:87257174-87257193 MsG0380016740.01.T01:CDS 35.0%
ATGCTATACTTGTGATTGAC+AGG - Chr3:87258927-87258946 MsG0380016740.01.T01:CDS 35.0%
CCTTCCGGTTTAAATCTAAA+AGG + Chr3:87256384-87256403 None:intergenic 35.0%
GAACTATCATTGAGAGCTTA+TGG + Chr3:87258250-87258269 None:intergenic 35.0%
GATCGTGATGATACTCATAA+GGG + Chr3:87256099-87256118 None:intergenic 35.0%
GCTACTGTTGCATTAGATTT+AGG - Chr3:87256250-87256269 MsG0380016740.01.T01:CDS 35.0%
TAGCTATGAAGAAGATGATG+AGG - Chr3:87256071-87256090 MsG0380016740.01.T01:three_prime_UTR 35.0%
TATCAGTGATGCCTAATTTC+AGG - Chr3:87257091-87257110 MsG0380016740.01.T01:CDS 35.0%
TATGAGTATCATCACGATCT+GGG - Chr3:87256100-87256119 MsG0380016740.01.T01:intron 35.0%
TATTGTTGCACAAAACCTCT+TGG - Chr3:87258041-87258060 MsG0380016740.01.T01:intron 35.0%
TCTAAACTTGCAACAGGATA+AGG - Chr3:87257216-87257235 MsG0380016740.01.T01:CDS 35.0%
TGAAATGTTAGCTCAACAGT+AGG - Chr3:87257399-87257418 MsG0380016740.01.T01:intron 35.0%
TGTTGTACACTATCAGAAAG+GGG - Chr3:87255983-87256002 MsG0380016740.01.T01:three_prime_UTR 35.0%
TTAAGGTGATCTACATCTTC+AGG + Chr3:87257172-87257191 None:intergenic 35.0%
TTAGAATGGGCAATTTCTGA+GGG - Chr3:87257849-87257868 MsG0380016740.01.T01:CDS 35.0%
TTATGAGTATCATCACGATC+TGG - Chr3:87256099-87256118 MsG0380016740.01.T01:intron 35.0%
TTCAACATTCAGAGCTTCTT+TGG - Chr3:87255871-87255890 MsG0380016740.01.T01:three_prime_UTR 35.0%
TTTGAATCCATGTCAGATTG+AGG + Chr3:87258559-87258578 None:intergenic 35.0%
TTTGATTCAAAGACAAGGTG+GGG + Chr3:87257979-87257998 None:intergenic 35.0%
! AAAATCGCCATGCAGTTTTA+TGG - Chr3:87255925-87255944 MsG0380016740.01.T01:three_prime_UTR 35.0%
! ATCATTTGAAGTGGCACTAA+GGG + Chr3:87257489-87257508 None:intergenic 35.0%
! CCTTTTAGATTTAAACCGGA+AGG - Chr3:87256381-87256400 MsG0380016740.01.T01:CDS 35.0%
! TATCATTTGAAGTGGCACTA+AGG + Chr3:87257490-87257509 None:intergenic 35.0%
!! ACAAGTTGTTGTTCTTTTGC+AGG - Chr3:87258973-87258992 MsG0380016740.01.T01:CDS 35.0%
!! CAAAAGTACTTTCAAAGCAG+AGG - Chr3:87255897-87255916 MsG0380016740.01.T01:three_prime_UTR 35.0%
!! TTGTTGTTCTTTTGCAGGAT+TGG - Chr3:87258978-87258997 MsG0380016740.01.T01:CDS 35.0%
!! TTTTACAAGAGGTTGTTTCC+AGG + Chr3:87258360-87258379 None:intergenic 35.0%
!! TTTTGGGGATATAGCAGATT+GGG - Chr3:87258769-87258788 MsG0380016740.01.T01:intron 35.0%
AAGCAGTGTCATCCTTAGAA+TGG - Chr3:87257835-87257854 MsG0380016740.01.T01:CDS 40.0%
ACGTACAATACACCAAATGG+TGG - Chr3:87258395-87258414 MsG0380016740.01.T01:intron 40.0%
AGATTTAGATACCCTCTTGC+TGG + Chr3:87256026-87256045 None:intergenic 40.0%
AGCAGTGTCATCCTTAGAAT+GGG - Chr3:87257836-87257855 MsG0380016740.01.T01:CDS 40.0%
CAGCTTATGACAAAAGCTGA+TGG - Chr3:87256846-87256865 MsG0380016740.01.T01:intron 40.0%
CGTACAATACACCAAATGGT+GGG - Chr3:87258396-87258415 MsG0380016740.01.T01:intron 40.0%
CTAACTTCAAAGAGACCTTG+TGG - Chr3:87258656-87258675 MsG0380016740.01.T01:intron 40.0%
CTATTGTGAAAATCAGCTCC+AGG - Chr3:87258855-87258874 MsG0380016740.01.T01:intron 40.0%
CTCAGAAATTGCCCATTCTA+AGG + Chr3:87257850-87257869 None:intergenic 40.0%
CTCTACCACTGAACATAACA+GGG + Chr3:87256628-87256647 None:intergenic 40.0%
CTCTGGCGTTGTAATTTCTA+GGG - Chr3:87257425-87257444 MsG0380016740.01.T01:intron 40.0%
CTTAGAATGGGCAATTTCTG+AGG - Chr3:87257848-87257867 MsG0380016740.01.T01:CDS 40.0%
GAAAATCAGCTCCAGGATAT+TGG - Chr3:87258862-87258881 MsG0380016740.01.T01:intron 40.0%
GATACTATTGGAATGGGAAG+TGG + Chr3:87256660-87256679 None:intergenic 40.0%
GATCACCTTAAGAAGGAAGA+AGG - Chr3:87257181-87257200 MsG0380016740.01.T01:CDS 40.0%
GATCTCTACTGAAACTCCTT+CGG + Chr3:87256416-87256435 None:intergenic 40.0%
GCTACGTACAATACACCAAA+TGG - Chr3:87258392-87258411 MsG0380016740.01.T01:intron 40.0%
GGAATATTTGGTACCGTTAC+AGG + Chr3:87259076-87259095 None:intergenic 40.0%
GGCTAAAAATGATCCATGGA+AGG - Chr3:87258718-87258737 MsG0380016740.01.T01:intron 40.0%
GTTGTACACTATCAGAAAGG+GGG - Chr3:87255984-87256003 MsG0380016740.01.T01:three_prime_UTR 40.0%
TAGGGACAGAATCCAAAACA+TGG - Chr3:87257443-87257462 MsG0380016740.01.T01:intron 40.0%
TCTAAGGATGACACTGCTTT+AGG + Chr3:87257834-87257853 None:intergenic 40.0%
TCTACCACTGAACATAACAG+GGG + Chr3:87256627-87256646 None:intergenic 40.0%
TCTCTACCACTGAACATAAC+AGG + Chr3:87256629-87256648 None:intergenic 40.0%
TCTCTGGCGTTGTAATTTCT+AGG - Chr3:87257424-87257443 MsG0380016740.01.T01:intron 40.0%
TTGATTCAAAGACAAGGTGG+GGG + Chr3:87257978-87257997 None:intergenic 40.0%
TTGCACAAAACCTCTTGGTT+TGG - Chr3:87258046-87258065 MsG0380016740.01.T01:intron 40.0%
TTTCTACTCTTAGCAGCTCA+AGG + Chr3:87258094-87258113 None:intergenic 40.0%
TTTGGTGGGAACAACTAACA+AGG - Chr3:87258064-87258083 MsG0380016740.01.T01:intron 40.0%
! AGGATAAGGATGCTGAGTTT+TGG - Chr3:87257230-87257249 MsG0380016740.01.T01:CDS 40.0%
! ATCTTCAGGTTTCTGTGGTT+GGG + Chr3:87257158-87257177 None:intergenic 40.0%
! GATAAGGATGCTGAGTTTTG+GGG - Chr3:87257232-87257251 MsG0380016740.01.T01:CDS 40.0%
! GGAGCTTTTCAGAAATGAAG+AGG + Chr3:87256438-87256457 None:intergenic 40.0%
! GGATAAGGATGCTGAGTTTT+GGG - Chr3:87257231-87257250 MsG0380016740.01.T01:CDS 40.0%
! TCTACATCTTCAGGTTTCTG+TGG + Chr3:87257163-87257182 None:intergenic 40.0%
!! ACAAAACCTCTTGGTTTGGT+GGG - Chr3:87258050-87258069 MsG0380016740.01.T01:intron 40.0%
!! CTTTTGGGGATATAGCAGAT+TGG - Chr3:87258768-87258787 MsG0380016740.01.T01:intron 40.0%
!! GCTCTTTTATTTGGTCCACA+AGG + Chr3:87258674-87258693 None:intergenic 40.0%
!!! CTCTCAAGTTTTGAGCACTA+TGG + Chr3:87259013-87259032 None:intergenic 40.0%
AAGAGAATCCTACCAGCAAG+AGG - Chr3:87256011-87256030 MsG0380016740.01.T01:three_prime_UTR 45.0%
ACAGAATCCAAAACATGGCG+AGG - Chr3:87257448-87257467 MsG0380016740.01.T01:intron 45.0%
AGAGAATCCTACCAGCAAGA+GGG - Chr3:87256012-87256031 MsG0380016740.01.T01:three_prime_UTR 45.0%
AGTGCACTTCGCAAAGAGTT+TGG + Chr3:87257810-87257829 None:intergenic 45.0%
CCACACCTTCTTCCTTCTTA+AGG + Chr3:87257189-87257208 None:intergenic 45.0%
CCTTAAGAAGGAAGAAGGTG+TGG - Chr3:87257186-87257205 MsG0380016740.01.T01:CDS 45.0%
CTGCTATATCCCCAAAAGCA+TGG + Chr3:87258766-87258785 None:intergenic 45.0%
GATTGACAGGTCAGTGCTTA+TGG - Chr3:87258940-87258959 MsG0380016740.01.T01:CDS 45.0%
GTTTATGTGCACTGTACTGC+AGG - Chr3:87257882-87257901 MsG0380016740.01.T01:CDS 45.0%
TCTACCCCTGTTATGTTCAG+TGG - Chr3:87256620-87256639 MsG0380016740.01.T01:intron 45.0%
TGGTCTGGAAGACTCTCAAA+TGG + Chr3:87258746-87258765 None:intergenic 45.0%
TTAGATACCCTCTTGCTGGT+AGG + Chr3:87256022-87256041 None:intergenic 45.0%
TTCGTGGAACCTGACGAATT+AGG - Chr3:87258825-87258844 MsG0380016740.01.T01:intron 45.0%
TTTAAACCGGAAGGGTGATG+TGG - Chr3:87256390-87256409 MsG0380016740.01.T01:CDS 45.0%
! AGTCTTCCAGACCATGCTTT+TGG - Chr3:87258752-87258771 MsG0380016740.01.T01:intron 45.0%
! ATATCCCCAAAAGCATGGTC+TGG + Chr3:87258761-87258780 None:intergenic 45.0%
! CATCTTCAGGTTTCTGTGGT+TGG + Chr3:87257159-87257178 None:intergenic 45.0%
! CCAAAAAGGGGTTTGCTTAC+AGG + Chr3:87257319-87257338 None:intergenic 45.0%
! CCTGTAAGCAAACCCCTTTT+TGG - Chr3:87257316-87257335 MsG0380016740.01.T01:intron 45.0%
! GTCTTCCAGACCATGCTTTT+GGG - Chr3:87258753-87258772 MsG0380016740.01.T01:intron 45.0%
! TAATCGTCCTCGCCATGTTT+TGG + Chr3:87257458-87257477 None:intergenic 45.0%
! TCTTCCAGACCATGCTTTTG+GGG - Chr3:87258754-87258773 MsG0380016740.01.T01:intron 45.0%
! TGGGCAATTTCTGAGGGAAA+AGG - Chr3:87257855-87257874 MsG0380016740.01.T01:CDS 45.0%
!! CACAAAACCTCTTGGTTTGG+TGG - Chr3:87258049-87258068 MsG0380016740.01.T01:intron 45.0%
!!! TATTTATTTTCATAAAAAAA+GGG + Chr3:87258471-87258490 None:intergenic 5.0%
AGCTCAACAGTAGGAGTCTC+TGG - Chr3:87257408-87257427 MsG0380016740.01.T01:intron 50.0%
CTCTCAAATGGCTCCTTCCA+TGG + Chr3:87258734-87258753 None:intergenic 50.0%
GGGATATAGCAGATTGGGAG+AGG - Chr3:87258774-87258793 MsG0380016740.01.T01:intron 50.0%
GTCAGATTGAGGCCCTGTAT+GGG + Chr3:87258548-87258567 None:intergenic 50.0%
GTTGTTCCCACCAAACCAAG+AGG + Chr3:87258059-87258078 None:intergenic 50.0%
TACAGGGCCTCAATCTGACA+TGG - Chr3:87258549-87258568 MsG0380016740.01.T01:intron 50.0%
TGTCAGATTGAGGCCCTGTA+TGG + Chr3:87258549-87258568 None:intergenic 50.0%
ACTAAAGCTCCCGCATACGC+AGG + Chr3:87258437-87258456 None:intergenic 55.0%
ATACGCAGGGGTCTAGGAAG+GGG + Chr3:87258423-87258442 None:intergenic 55.0%
CATACGCAGGGGTCTAGGAA+GGG + Chr3:87258424-87258443 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG + Chr3:87258436-87258455 None:intergenic 55.0%
GTGCACTGTACTGCAGGACT+TGG - Chr3:87257888-87257907 MsG0380016740.01.T01:CDS 55.0%
TAAAGCTCCCGCATACGCAG+GGG + Chr3:87258435-87258454 None:intergenic 55.0%
TAGGAAGGGGTCCCACCATT+TGG + Chr3:87258410-87258429 None:intergenic 55.0%
TTCCTAGACCCCTGCGTATG+CGG - Chr3:87258424-87258443 MsG0380016740.01.T01:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG - Chr3:87258441-87258460 MsG0380016740.01.T01:intron 55.0%
!!! CGCGGACACGGTTTTGAATC+AGG + Chr3:87258802-87258821 None:intergenic 55.0%
CTTCGGCCACATCACCCTTC+CGG + Chr3:87256399-87256418 None:intergenic 60.0%
GCATACGCAGGGGTCTAGGA+AGG + Chr3:87258425-87258444 None:intergenic 60.0%
GTCAGGTTCCACGAAGAGCG+CGG + Chr3:87258820-87258839 None:intergenic 60.0%
TCCTAGACCCCTGCGTATGC+GGG - Chr3:87258425-87258444 MsG0380016740.01.T01:intron 60.0%
! TTCCACGAAGAGCGCGGACA+CGG + Chr3:87258814-87258833 None:intergenic 60.0%
AACCGTGTCCGCGCTCTTCG+TGG - Chr3:87258809-87258828 MsG0380016740.01.T01:intron 65.0%
CGGAAGGGTGATGTGGCCGA+AGG - Chr3:87256397-87256416 MsG0380016740.01.T01:intron 65.0%
TCCCGCATACGCAGGGGTCT+AGG + Chr3:87258429-87258448 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87255829 87259215 87255829 ID=MsG0380016740.01;Name=MsG0380016740.01
Chr3 mRNA 87255829 87259215 87255829 ID=MsG0380016740.01.T01;Parent=MsG0380016740.01;Name=MsG0380016740.01.T01;_AED=0.49;_eAED=0.49;_QI=13|1|1|1|0.5|0.4|5|275|286
Chr3 exon 87255829 87256095 87255829 ID=MsG0380016740.01.T01:exon:22118;Parent=MsG0380016740.01.T01
Chr3 exon 87256198 87256409 87256198 ID=MsG0380016740.01.T01:exon:22117;Parent=MsG0380016740.01.T01
Chr3 exon 87257082 87257252 87257082 ID=MsG0380016740.01.T01:exon:22116;Parent=MsG0380016740.01.T01
Chr3 exon 87257726 87257931 87257726 ID=MsG0380016740.01.T01:exon:22115;Parent=MsG0380016740.01.T01
Chr3 exon 87258923 87259215 87258923 ID=MsG0380016740.01.T01:exon:22114;Parent=MsG0380016740.01.T01
Chr3 five_prime_UTR 87259203 87259215 87259203 ID=MsG0380016740.01.T01:five_prime_utr;Parent=MsG0380016740.01.T01
Chr3 CDS 87258923 87259202 87258923 ID=MsG0380016740.01.T01:cds;Parent=MsG0380016740.01.T01
Chr3 CDS 87257726 87257931 87257726 ID=MsG0380016740.01.T01:cds;Parent=MsG0380016740.01.T01
Chr3 CDS 87257082 87257252 87257082 ID=MsG0380016740.01.T01:cds;Parent=MsG0380016740.01.T01
Chr3 CDS 87256206 87256409 87256206 ID=MsG0380016740.01.T01:cds;Parent=MsG0380016740.01.T01
Chr3 three_prime_UTR 87256198 87256205 87256198 ID=MsG0380016740.01.T01:three_prime_utr;Parent=MsG0380016740.01.T01
Chr3 three_prime_UTR 87255829 87256095 87255829 ID=MsG0380016740.01.T01:three_prime_utr;Parent=MsG0380016740.01.T01
Gene Sequence

>MsG0380016740.01.T01

ATGGAAAGTGTAAGTAACATTGGTTTCTCTTCAACATTCAGAGCTTCTTTGGACACAAAAGTACTTTCAAAGCAGAGGAAACAAAAATCGCCATGCAGTTTTATGGTTTCTATCAATTACTCTATTAGGATGAACAAAATTTGTTGTACACTATCAGAAAGGGGGATTGAAGAGAATCCTACCAGCAAGAGGGTATCTAAATCTAATGATTTAATGGAAGAATACAATATAGCTATGAAGAAGATGATGAGGAACCCTTATGAGTATCATCACGATCTGGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCCCAACCACAGAAACCTGAAGATGTAGATCACCTTAAGAAGGAAGAAGGTGTGGCATATATTCTAAACTTGCAACAGGATAAGGATGCTGAGTTTTGGGGAATAGACTTGCAGTCAATAGTAAAAAAGTGTCGCGAACTTGAAATTAGACACATGAGGAGACCTGCAGTAGACTTTGATCCAAACTCTTTGCGAAGTGCACTACCTAAAGCAGTGTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCACTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTGACAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCCTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACAAGGAGCAACTTATGATTTGGCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGATTGGGAGAGGAACCTGATTCAAAACCGTGTCCGCGCTCTTCGTGGAACCTGA

Protein sequence

>MsG0380016740.01.T01

MESVSNIGFSSTFRASLDTKVLSKQRKQKSPCSFMVSINYSIRMNKICCTLSERGIEENPTSKRVSKSNDLMEEYNIAMKKMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDVDHLKKEEGVAYILNLQQDKDAEFWGIDLQSIVKKCRELEIRHMRRPAVDFDPNSLRSALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVTIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIQGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT*