AlfalfaGEDB | MsG0580025896.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025896.01

KEGG: K13945
GO: -
PFAM: PF03195

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025896.01.T01	XP_013449868.1	90.667	225	19	2	1	224	1	224	3.42E-143	409

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025896.01.T01	Q9M2J7	79.661	118	23	1	8	124	11	128	2.50E-67	209

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025896.01.T01	A0A072U3H8	90.667	225	19	2	1	224	1	224	1.63e-143	409

TFs/TRs:

Gene ID	Type	Classification
MsG0580025896.01.T01	TF	LOB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000367.01	MsG0580025896.01	0.823046	1.710514e-53	1.456693e-50
MsG0180001614.01	MsG0580025896.01	-0.805376	1.375448e-49	7.265288e-47
MsG0180001656.01	MsG0580025896.01	-0.803810	2.917984e-49	1.480437e-46
MsG0180003484.01	MsG0580025896.01	0.809692	1.668718e-50	9.864175e-48
MsG0180004322.01	MsG0580025896.01	-0.801379	9.259814e-49	4.415512e-46
MsG0180005127.01	MsG0580025896.01	0.821040	4.988574e-53	4.014164e-50
MsG0180005146.01	MsG0580025896.01	0.813088	3.055524e-51	1.976331e-48
MsG0180005819.01	MsG0580025896.01	0.804362	2.239887e-49	1.152666e-46
MsG0180006010.01	MsG0580025896.01	0.820275	7.476654e-53	5.889229e-50
MsG0180006253.01	MsG0580025896.01	0.802687	4.984778e-49	2.457309e-46
MsG0280006316.01	MsG0580025896.01	0.813065	3.090503e-51	1.997801e-48
MsG0280006402.01	MsG0580025896.01	-0.811636	6.340600e-51	3.945146e-48
MsG0280010854.01	MsG0580025896.01	-0.801592	8.373549e-49	4.014313e-46
MsG0280011475.01	MsG0580025896.01	-0.802255	6.118155e-49	2.983067e-46
MsG0480018486.01	MsG0580025896.01	0.804230	2.386378e-49	1.223818e-46
MsG0480021175.01	MsG0580025896.01	0.808024	3.794246e-50	2.145949e-47
MsG0480021226.01	MsG0580025896.01	0.805068	1.595642e-49	8.362059e-47
MsG0480022833.01	MsG0580025896.01	0.807817	4.199002e-50	2.361957e-47
MsG0480023067.01	MsG0580025896.01	0.839402	1.619077e-57	2.233581e-54
MsG0480023173.01	MsG0580025896.01	-0.818689	1.719317e-52	1.295885e-49
MsG0480023429.01	MsG0580025896.01	0.807373	5.217282e-50	2.900995e-47
MsG0580025023.01	MsG0580025896.01	0.806896	6.584110e-50	3.615875e-47
MsG0580025633.01	MsG0580025896.01	0.802225	6.206499e-49	3.023719e-46
MsG0580025896.01	MsG0580029177.01	-0.805196	1.500200e-49	7.887617e-47
MsG0580025896.01	MsG0680031356.01	0.812294	4.558042e-51	2.886948e-48
MsG0580025896.01	MsG0680032461.01	0.809032	2.311827e-50	1.342675e-47
MsG0580025896.01	MsG0780038305.01	0.810213	1.289069e-50	7.724045e-48
MsG0580025896.01	MsG0780038919.01	0.809208	2.120265e-50	1.237295e-47
MsG0580025896.01	MsG0780039431.01	0.803252	3.810044e-49	1.905479e-46
MsG0580025896.01	MsG0780039912.01	0.817742	2.816791e-52	2.068567e-49
MsG0580025896.01	MsG0780040670.01	0.804166	2.460730e-49	1.259919e-46
MsG0580025896.01	MsG0780040719.01	0.887858	9.856989e-73	7.455056e-69
MsG0580025896.01	MsG0780040977.01	0.818797	1.625266e-52	1.228634e-49
MsG0580025896.01	MsG0780040991.01	0.835394	1.721120e-56	2.102039e-53
MsG0580025896.01	MsG0880044545.01	-0.815349	9.675296e-52	6.654357e-49
MsG0580025896.01	MsG0880044548.01	-0.818026	2.429196e-52	1.797782e-49
MsG0580025896.01	MsG0880044968.01	-0.800818	1.205763e-48	5.668565e-46
MsG0580025896.01	MsG0880045703.01	-0.812886	3.382297e-51	2.176057e-48
MsG0580025896.01	MsG0880046010.01	-0.811074	8.397251e-51	5.148346e-48
MsG0580025896.01	MsG0880046402.01	0.807499	4.905501e-50	2.736732e-47
MsG0580025896.01	MsG0880046923.01	0.810900	9.157372e-51	5.588842e-48
MsG0580025896.01	MsG0880047450.01	0.808841	2.540656e-50	1.468001e-47
MsG0580025896.01	MsG0880047664.01	0.806422	8.289796e-50	4.497553e-47
MsG0380016031.01	MsG0580025896.01	0.803023	4.249334e-49	2.112631e-46
MsG0380016250.01	MsG0580025896.01	0.819835	9.425112e-53	7.333965e-50
MsG0380016456.01	MsG0580025896.01	-0.803291	3.739639e-49	1.872102e-46
MsG0380016845.01	MsG0580025896.01	0.813856	2.070701e-51	1.367644e-48
MsG0380018035.01	MsG0580025896.01	-0.808535	2.953293e-50	1.692889e-47
MsG0280009526.01	MsG0580025896.01	0.804918	1.715192e-49	8.954583e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025896.01.T01	MTR_7g096610	90.667	225	19	2	1	224	1	224	4.14e-147	409
MsG0580025896.01.T01	MTR_1g070205	68.063	191	52	4	8	195	12	196	3.18e-88	260
MsG0580025896.01.T01	MTR_7g096530	70.755	106	31	0	3	108	9	114	5.50e-53	170
MsG0580025896.01.T01	MTR_5g080470	67.308	104	34	0	2	105	1	104	7.01e-50	161
MsG0580025896.01.T01	MTR_8g036085	69.903	103	31	0	8	110	23	125	1.86e-49	161
MsG0580025896.01.T01	MTR_8g036105	60.656	122	45	2	5	123	15	136	1.60e-47	156
MsG0580025896.01.T01	MTR_1g070220	67.308	104	34	0	5	108	12	115	5.30e-47	154
MsG0580025896.01.T01	MTR_7g074990	68.317	101	32	0	8	108	20	120	1.05e-46	154
MsG0580025896.01.T01	MTR_7g075230	59.690	129	43	5	5	131	9	130	4.55e-44	146
MsG0580025896.01.T01	MTR_6g027710	56.000	125	53	1	7	129	39	163	6.37e-44	147
MsG0580025896.01.T01	MTR_3g071590	44.966	149	78	3	1	149	1	145	5.54e-35	122
MsG0580025896.01.T01	MTR_5g083230	45.963	161	71	6	4	163	2	147	3.08e-34	120
MsG0580025896.01.T01	MTR_6g027700	51.818	110	50	1	8	117	7	113	1.69e-33	120
MsG0580025896.01.T01	MTR_4g083680	52.830	106	49	1	4	109	11	115	7.07e-33	117
MsG0580025896.01.T01	MTR_2g068760	56.000	100	43	1	4	103	9	107	2.93e-32	115
MsG0580025896.01.T01	MTR_5g083960	50.000	120	54	3	7	122	38	155	5.87e-32	115
MsG0580025896.01.T01	MTR_7g033800	55.102	98	43	1	5	102	8	104	1.09e-31	114
MsG0580025896.01.T01	MTR_5g083010	49.541	109	53	2	5	113	8	114	1.10e-31	114
MsG0580025896.01.T01	MTR_3g031660	42.308	156	82	5	4	158	2	150	1.69e-31	114
MsG0580025896.01.T01	MTR_4g105170	56.250	96	41	1	7	102	10	104	2.40e-31	114
MsG0580025896.01.T01	MTR_3g452660	50.000	114	56	1	2	115	1	113	2.65e-31	116
MsG0580025896.01.T01	MTR_3g077240	55.208	96	42	1	7	102	9	103	1.19e-30	112
MsG0580025896.01.T01	MTR_3g094690	50.000	112	53	2	7	117	46	155	5.15e-30	111
MsG0580025896.01.T01	MTR_3g071420	48.544	103	52	1	5	107	11	112	7.26e-30	110
MsG0580025896.01.T01	MTR_5g017950	53.922	102	46	1	1	102	1	101	9.50e-30	112
MsG0580025896.01.T01	MTR_3g073690	48.182	110	56	1	1	110	2	110	1.53e-29	109
MsG0580025896.01.T01	MTR_6g005070	52.041	98	46	1	5	102	6	102	2.74e-29	107
MsG0580025896.01.T01	MTR_2g093310	50.515	97	47	1	7	103	32	127	1.04e-28	107
MsG0580025896.01.T01	MTR_3g094690	50.000	112	52	3	7	117	46	154	3.12e-28	107
MsG0580025896.01.T01	MTR_6g005080	49.515	103	50	2	1	102	2	103	1.55e-27	102
MsG0580025896.01.T01	MTR_4g060950	52.041	98	45	2	7	103	23	119	2.57e-26	100
MsG0580025896.01.T01	MTR_1g095850	50.526	95	46	1	9	103	73	166	1.44e-25	100
MsG0580025896.01.T01	MTR_5g075020	55.340	103	43	2	7	108	42	142	2.66e-25	99.4
MsG0580025896.01.T01	MTR_5g075020	55.340	103	43	2	7	108	46	146	4.75e-25	98.6
MsG0580025896.01.T01	MTR_8g040900	54.023	87	39	1	2	88	1	86	4.23e-24	95.9
MsG0580025896.01.T01	MTR_7g028905	41.818	110	63	1	7	116	4	112	6.46e-24	92.4
MsG0580025896.01.T01	MTR_5g093010	43.519	108	60	1	9	116	6	112	7.98e-24	93.2
MsG0580025896.01.T01	MTR_8g079660	36.538	104	65	1	8	111	8	110	1.74e-17	79.0
MsG0580025896.01.T01	MTR_8g079620	39.423	104	62	1	8	111	8	110	2.70e-17	78.2
MsG0580025896.01.T01	MTR_8g017090	36.275	102	64	1	9	110	13	113	5.79e-17	78.2
MsG0580025896.01.T01	MTR_4g107450	36.190	105	66	1	4	108	6	109	1.88e-16	76.6
MsG0580025896.01.T01	MTR_2g100020	33.645	107	70	1	4	110	15	120	3.53e-16	75.9
MsG0580025896.01.T01	MTR_8g079580	35.294	102	64	2	8	108	8	108	1.36e-14	70.5
MsG0580025896.01.T01	MTR_6g011250	38.636	88	52	2	2	88	3	89	2.14e-14	69.3
MsG0580025896.01.T01	MTR_6g011230	34.906	106	65	2	9	111	12	116	1.74e-13	67.0
MsG0580025896.01.T01	MTR_6g011200	38.824	85	48	3	9	90	10	93	4.11e-13	67.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025896.01.T01	AT3G58190	79.661	118	23	1	8	124	11	128	2.55e-68	209
MsG0580025896.01.T01	AT2G42440	74.046	131	33	1	2	131	1	131	4.28e-67	207
MsG0580025896.01.T01	AT2G31310	63.194	144	49	2	2	144	1	141	8.21e-61	189
MsG0580025896.01.T01	AT2G42430	70.093	107	32	0	4	110	11	117	2.18e-51	167
MsG0580025896.01.T01	AT4G00210	60.000	120	48	0	3	122	6	125	2.79e-48	158
MsG0580025896.01.T01	AT5G06080	65.421	107	37	0	2	108	1	107	2.29e-47	154
MsG0580025896.01.T01	AT3G03760	68.627	102	32	0	7	108	50	151	3.15e-47	157
MsG0580025896.01.T01	AT2G45420	71.000	100	29	0	11	110	40	139	8.26e-47	155
MsG0580025896.01.T01	AT4G00220	69.000	100	31	0	11	110	20	119	1.08e-44	149
MsG0580025896.01.T01	AT2G45410	60.870	115	43	1	11	123	19	133	3.19e-43	144
MsG0580025896.01.T01	AT2G30130	50.000	118	57	2	2	118	1	117	1.57e-31	114
MsG0580025896.01.T01	AT3G27650	56.250	96	41	1	7	102	38	132	1.73e-31	113
MsG0580025896.01.T01	AT5G63090	56.250	96	41	1	7	102	10	104	5.43e-31	112
MsG0580025896.01.T01	AT5G63090	56.250	96	41	1	7	102	10	104	5.43e-31	112
MsG0580025896.01.T01	AT5G63090	56.250	96	41	1	7	102	10	104	5.43e-31	112
MsG0580025896.01.T01	AT5G63090	56.250	96	41	1	7	102	10	104	5.43e-31	112
MsG0580025896.01.T01	AT3G11090	45.312	128	65	3	5	128	8	134	3.00e-30	110
MsG0580025896.01.T01	AT1G31320	53.261	92	42	1	4	95	9	99	8.45e-30	109
MsG0580025896.01.T01	AT1G07900	52.577	97	45	1	7	103	32	127	1.12e-29	109
MsG0580025896.01.T01	AT1G16530	55.556	99	42	2	7	104	13	110	1.15e-29	108
MsG0580025896.01.T01	AT2G28500	52.577	97	45	1	7	103	54	149	7.13e-29	108
MsG0580025896.01.T01	AT5G66870	50.459	109	53	1	2	110	1	108	8.11e-28	107
MsG0580025896.01.T01	AT2G30340	49.515	103	49	2	7	108	52	152	2.09e-27	105
MsG0580025896.01.T01	AT2G30340	49.515	103	49	2	7	108	51	151	2.37e-27	105
MsG0580025896.01.T01	AT2G23660	48.039	102	52	1	7	108	4	104	1.04e-25	102
MsG0580025896.01.T01	AT2G23660	48.039	102	52	1	7	108	4	104	1.04e-25	102
MsG0580025896.01.T01	AT2G23660	48.039	102	52	1	7	108	4	104	1.04e-25	102
MsG0580025896.01.T01	AT3G26660	46.316	95	50	1	9	103	6	99	1.87e-25	96.7
MsG0580025896.01.T01	AT3G26620	46.316	95	50	1	9	103	6	99	3.55e-25	95.9
MsG0580025896.01.T01	AT1G65620	58.537	82	33	1	7	88	8	88	1.22e-24	96.7
MsG0580025896.01.T01	AT1G65620	58.537	82	33	1	7	88	8	88	1.22e-24	96.7
MsG0580025896.01.T01	AT1G65620	58.537	82	33	1	7	88	8	88	1.22e-24	96.7
MsG0580025896.01.T01	AT1G65620	58.537	82	33	1	7	88	8	88	1.22e-24	96.7
MsG0580025896.01.T01	AT1G65620	58.537	82	33	1	7	88	8	88	1.22e-24	96.7
MsG0580025896.01.T01	AT2G40470	52.427	103	46	2	7	108	19	119	2.25e-24	96.3
MsG0580025896.01.T01	AT3G50510	41.593	113	65	1	2	114	6	117	2.52e-24	95.9
MsG0580025896.01.T01	AT3G50510	41.593	113	65	1	2	114	6	117	2.52e-24	95.9
MsG0580025896.01.T01	AT2G40470	52.427	103	46	2	7	108	44	144	3.19e-24	96.3
MsG0580025896.01.T01	AT3G13850	38.739	111	58	3	9	111	37	145	2.51e-17	79.0
MsG0580025896.01.T01	AT1G72980	36.190	105	66	1	4	108	9	112	5.82e-16	73.9
MsG0580025896.01.T01	AT5G35900	38.739	111	66	2	9	118	6	115	6.96e-16	73.9
MsG0580025896.01.T01	AT1G06280	39.474	76	45	1	9	84	25	99	9.67e-14	67.8
MsG0580025896.01.T01	AT3G47870	34.831	89	57	1	4	92	32	119	3.21e-13	68.2

Find 45 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGACTTCAAGATCCAATTTA+TGG	0.150762	5:-26312911	MsG0580025896.01.T01:CDS
CCTTATGAATAGCTGCAAAA+TGG	0.260543	5:+26313029	None:intergenic
ATTAGTGGAAGAAGAGAAAT+CGG	0.262535	5:+26312192	None:intergenic
TTGAGGAGGAAATGTGTTAA+AGG	0.286061	5:-26313094	MsG0580025896.01.T01:CDS
GCAGCTATTCATAAGGTCTT+TGG	0.287235	5:-26313022	MsG0580025896.01.T01:CDS
TTTCAAAATTCTTCTCATTA+GGG	0.291892	5:+26312293	None:intergenic
TGGGCAACAGAACCATAAAT+TGG	0.301569	5:+26312899	None:intergenic
CTGTCTTTGCATGTTGTCAT+AGG	0.336728	5:+26312021	None:intergenic
CTCATGGATCTAAACCCTAT+TGG	0.344271	5:-26312127	MsG0580025896.01.T01:CDS
ATTGGAAACTATGAAAATTC+AGG	0.345302	5:-26312109	MsG0580025896.01.T01:CDS
TTTCCTCCTCAAGAATTTGC+AGG	0.357584	5:+26313105	None:intergenic
ATGAGATGCTTTCTTCCAAT+AGG	0.363922	5:+26312083	None:intergenic
TGAAAATTCAGGAACCCTAT+TGG	0.376897	5:-26312098	MsG0580025896.01.T01:CDS
AATGGGTAGCACTTTGTTCA+TGG	0.389795	5:+26313047	None:intergenic
ACGGCCATGATGACTGGTTC+TGG	0.395558	5:-26313142	None:intergenic
TGAGATGCTTTCTTCCAATA+GGG	0.428947	5:+26312084	None:intergenic
TCTTGAGGGAGAATATTAGT+AGG	0.429657	5:+26312268	None:intergenic
CTTATGAATAGCTGCAAAAT+GGG	0.434815	5:+26313030	None:intergenic
ATTCTTACGGCCATGATGAC+TGG	0.446907	5:-26313148	None:intergenic
TGTTGTTGATGAGAGATTAG+TGG	0.463491	5:+26312177	None:intergenic
TCCCTCAAGATCTTCAAAGT+TGG	0.463884	5:-26312255	MsG0580025896.01.T01:CDS
CTTTGTTCATGGCAAAAGTA+AGG	0.479437	5:+26313058	None:intergenic
CAACAACACAATATTACAAT+GGG	0.480559	5:-26312162	MsG0580025896.01.T01:CDS
CAAATTAGCCACTTACTGAT+AGG	0.482945	5:+26311994	None:intergenic
CAGATGAACAAACCTGTTGT+TGG	0.487101	5:+26312864	None:intergenic
ACTGGTTCTGGTTCTCCTTG+TGG	0.494488	5:-26313130	MsG0580025896.01.T01:CDS
TCTTCAAAGTTGGTTCCAGA+TGG	0.523638	5:-26312245	MsG0580025896.01.T01:CDS
AACCAACTTTGAAGATCTTG+AGG	0.528680	5:+26312253	None:intergenic
GCTTCACAACGATCAGTCAC+AGG	0.531664	5:+26312965	None:intergenic
TGGGACTACAAACACTCTCA+TGG	0.531675	5:-26312143	MsG0580025896.01.T01:CDS
TTAGTGGAAGAAGAGAAATC+GGG	0.531706	5:+26312193	None:intergenic
ACCAACTTTGAAGATCTTGA+GGG	0.534056	5:+26312254	None:intergenic
GTGGAGCCTGCAAATTCTTG+AGG	0.534107	5:-26313111	MsG0580025896.01.T01:CDS
AAGAAATTGAGAACACATGC+TGG	0.541655	5:+26312216	None:intergenic
ATGAACAAACCTGTTGTTGG+AGG	0.559046	5:+26312867	None:intergenic
AGAACCAGAACCAGTCATCA+TGG	0.567393	5:+26313138	None:intergenic
TCAACAACACAATATTACAA+TGG	0.569747	5:-26312163	MsG0580025896.01.T01:CDS
TGAGAGAACAAGCAGCTCAA+AGG	0.584503	5:-26312345	MsG0580025896.01.T01:CDS
AAGAATTTGCAGGCTCCACA+AGG	0.586151	5:+26313115	None:intergenic
CAGTCACAGGGAGGTGTGCG+AGG	0.596818	5:+26312978	None:intergenic
TGAACAAACCTGTTGTTGGA+GGG	0.608742	5:+26312868	None:intergenic
GAGCCTGCAAATTCTTGAGG+AGG	0.637179	5:-26313108	MsG0580025896.01.T01:CDS
CTTCACAACGATCAGTCACA+GGG	0.652040	5:+26312966	None:intergenic
ATGACAACATGCAAAGACAG+TGG	0.691269	5:-26312018	MsG0580025896.01.T01:CDS
CACAACGATCAGTCACAGGG+AGG	0.754403	5:+26312969	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ACTCTTTTTTATATATAAAC+TGG	+	Chr5:26312440-26312459	None:intergenic	15.0%
!!!	TTGAGTTTGTAATAAAATTT+TGG	-	Chr5:26312652-26312671	MsG0580025896.01.T01:intron	15.0%
!!	TTTCAAAATTCTTCTCATTA+GGG	+	Chr5:26312852-26312871	None:intergenic	20.0%
!!!	AATTTTCATAGTTTCCAATA+GGG	+	Chr5:26313032-26313051	None:intergenic	20.0%
!!!	ATTAATTAACAAGAGTATCA+AGG	-	Chr5:26312389-26312408	MsG0580025896.01.T01:intron	20.0%
!!!	TTAATTAACAAGAGTATCAA+GGG	-	Chr5:26312390-26312409	MsG0580025896.01.T01:intron	20.0%
!!!	TTTTCAAAATTCTTCTCATT+AGG	+	Chr5:26312853-26312872	None:intergenic	20.0%
!	ATAGTAAGACCTAATAAACA+CGG	-	Chr5:26312480-26312499	MsG0580025896.01.T01:intron	25.0%
!	ATTGGAAACTATGAAAATTC+AGG	-	Chr5:26313033-26313052	MsG0580025896.01.T01:CDS	25.0%
!	CAACAACACAATATTACAAT+GGG	-	Chr5:26312980-26312999	MsG0580025896.01.T01:CDS	25.0%
!	TCAACAACACAATATTACAA+TGG	-	Chr5:26312979-26312998	MsG0580025896.01.T01:CDS	25.0%
!!	GAATTTTCATAGTTTCCAAT+AGG	+	Chr5:26313033-26313052	None:intergenic	25.0%
!!!	AGGTCTTACTATTGATTTTT+TGG	+	Chr5:26312472-26312491	None:intergenic	25.0%
	AGACTTCAAGATCCAATTTA+TGG	-	Chr5:26312231-26312250	MsG0580025896.01.T01:CDS	30.0%
	ATTAGTGGAAGAAGAGAAAT+CGG	+	Chr5:26312953-26312972	None:intergenic	30.0%
	CTTATGAATAGCTGCAAAAT+GGG	+	Chr5:26312115-26312134	None:intergenic	30.0%
	TTGTTGGAGGGAAAAAATAT+GGG	+	Chr5:26312265-26312284	None:intergenic	30.0%
!	ATTAGGGTTTTCAGAATTTG+GGG	+	Chr5:26312836-26312855	None:intergenic	30.0%
!	CATTAGGGTTTTCAGAATTT+GGG	+	Chr5:26312837-26312856	None:intergenic	30.0%
!	TATATTTGACAAAAGCACGA+TGG	-	Chr5:26312544-26312563	MsG0580025896.01.T01:intron	30.0%
!	TCATTAGGGTTTTCAGAATT+TGG	+	Chr5:26312838-26312857	None:intergenic	30.0%
	AAGAAATTGAGAACACATGC+TGG	+	Chr5:26312929-26312948	None:intergenic	35.0%
	AATGTAAGCGTATACCATCT+AGG	+	Chr5:26312325-26312344	None:intergenic	35.0%
	ATGAGATGCTTTCTTCCAAT+AGG	+	Chr5:26313062-26313081	None:intergenic	35.0%
	ATGTAAGCGTATACCATCTA+GGG	+	Chr5:26312324-26312343	None:intergenic	35.0%
	CCTTATGAATAGCTGCAAAA+TGG	+	Chr5:26312116-26312135	None:intergenic	35.0%
	CTTAAACTGAAAACCCTAGA+TGG	-	Chr5:26312308-26312327	MsG0580025896.01.T01:CDS	35.0%
	CTTTGTTCATGGCAAAAGTA+AGG	+	Chr5:26312087-26312106	None:intergenic	35.0%
	GGGTACTCCAGTTTATATAA+GGG	-	Chr5:26312410-26312429	MsG0580025896.01.T01:intron	35.0%
	GTTGTTGGAGGGAAAAAATA+TGG	+	Chr5:26312266-26312285	None:intergenic	35.0%
	TCTTGAGGGAGAATATTAGT+AGG	+	Chr5:26312877-26312896	None:intergenic	35.0%
	TGAAAATTCAGGAACCCTAT+TGG	-	Chr5:26313044-26313063	MsG0580025896.01.T01:CDS	35.0%
	TGAGATGCTTTCTTCCAATA+GGG	+	Chr5:26313061-26313080	None:intergenic	35.0%
	TGTAAGACTTGGCACATATT+TGG	-	Chr5:26312511-26312530	MsG0580025896.01.T01:intron	35.0%
	TTAGTGGAAGAAGAGAAATC+GGG	+	Chr5:26312952-26312971	None:intergenic	35.0%
	TTCTTCTTCCTGATCTTTGT+AGG	-	Chr5:26312744-26312763	MsG0580025896.01.T01:intron	35.0%
	TTGAGGAGGAAATGTGTTAA+AGG	-	Chr5:26312048-26312067	MsG0580025896.01.T01:CDS	35.0%
	TTGGTGTATTATTGATGCAC+TGG	-	Chr5:26312628-26312647	MsG0580025896.01.T01:intron	35.0%
!	AACCAACTTTGAAGATCTTG+AGG	+	Chr5:26312892-26312911	None:intergenic	35.0%
!	ACCAACTTTGAAGATCTTGA+GGG	+	Chr5:26312891-26312910	None:intergenic	35.0%
!	AGGGTACTCCAGTTTATATA+AGG	-	Chr5:26312409-26312428	MsG0580025896.01.T01:intron	35.0%
!	CCATTTTGCAGCTATTCATA+AGG	-	Chr5:26312113-26312132	MsG0580025896.01.T01:CDS	35.0%
!	TGGAGTACCCTTATATAAAC+TGG	+	Chr5:26312420-26312439	None:intergenic	35.0%
!	TGTTGTTGATGAGAGATTAG+TGG	+	Chr5:26312968-26312987	None:intergenic	35.0%
!!!	TATTTTTTCCCTCCAACAAC+AGG	-	Chr5:26312266-26312285	MsG0580025896.01.T01:CDS	35.0%
	AATGGGTAGCACTTTGTTCA+TGG	+	Chr5:26312098-26312117	None:intergenic	40.0%
	ACTCGCGCAGTAAATACAAT+TGG	-	Chr5:26312609-26312628	MsG0580025896.01.T01:intron	40.0%
	AGATCGACACCGTGTTTATT+AGG	+	Chr5:26312492-26312511	None:intergenic	40.0%
	ATGAACAAACCTGTTGTTGG+AGG	+	Chr5:26312278-26312297	None:intergenic	40.0%
	ATGACAACATGCAAAGACAG+TGG	-	Chr5:26313124-26313143	MsG0580025896.01.T01:CDS	40.0%
	ATTGACCACCTACAAAGATC+AGG	+	Chr5:26312755-26312774	None:intergenic	40.0%
	CAGATGAACAAACCTGTTGT+TGG	+	Chr5:26312281-26312300	None:intergenic	40.0%
	CTCATGGATCTAAACCCTAT+TGG	-	Chr5:26313015-26313034	MsG0580025896.01.T01:CDS	40.0%
	CTGTCTTTGCATGTTGTCAT+AGG	+	Chr5:26313124-26313143	None:intergenic	40.0%
	GCAGCTATTCATAAGGTCTT+TGG	-	Chr5:26312120-26312139	MsG0580025896.01.T01:CDS	40.0%
	TCCCTCAAGATCTTCAAAGT+TGG	-	Chr5:26312887-26312906	MsG0580025896.01.T01:CDS	40.0%
	TGAACAAACCTGTTGTTGGA+GGG	+	Chr5:26312277-26312296	None:intergenic	40.0%
	TGGGCAACAGAACCATAAAT+TGG	+	Chr5:26312246-26312265	None:intergenic	40.0%
	TTCTTCCTGATCTTTGTAGG+TGG	-	Chr5:26312747-26312766	MsG0580025896.01.T01:intron	40.0%
	TTGTATTTACTGCGCGAGTT+TGG	+	Chr5:26312608-26312627	None:intergenic	40.0%
	TTTCCTCCTCAAGAATTTGC+AGG	+	Chr5:26312040-26312059	None:intergenic	40.0%
!	ACATGCTGGAATTTTCCATC+TGG	+	Chr5:26312915-26312934	None:intergenic	40.0%
!	TCTTCAAAGTTGGTTCCAGA+TGG	-	Chr5:26312897-26312916	MsG0580025896.01.T01:CDS	40.0%
	AAGAATTTGCAGGCTCCACA+AGG	+	Chr5:26312030-26312049	None:intergenic	45.0%
	CTTCACAACGATCAGTCACA+GGG	+	Chr5:26312179-26312198	None:intergenic	45.0%
	TGAGAGAACAAGCAGCTCAA+AGG	-	Chr5:26312797-26312816	MsG0580025896.01.T01:intron	45.0%
	TGGGACTACAAACACTCTCA+TGG	-	Chr5:26312999-26313018	MsG0580025896.01.T01:CDS	45.0%
!	ACAAAAGCACGATGGCATCA+AGG	-	Chr5:26312552-26312571	MsG0580025896.01.T01:intron	45.0%
!	CACTGTGTTGATCTATGCAG+TGG	-	Chr5:26312699-26312718	MsG0580025896.01.T01:intron	45.0%
	GAGCCTGCAAATTCTTGAGG+AGG	-	Chr5:26312034-26312053	MsG0580025896.01.T01:CDS	50.0%
	GCTTCACAACGATCAGTCAC+AGG	+	Chr5:26312180-26312199	None:intergenic	50.0%
	GTGGAGCCTGCAAATTCTTG+AGG	-	Chr5:26312031-26312050	MsG0580025896.01.T01:CDS	50.0%
!!	ACTGGTTCTGGTTCTCCTTG+TGG	-	Chr5:26312012-26312031	MsG0580025896.01.T01:CDS	50.0%
!!	CGGTGTCGATCTGTAAGACT+TGG	-	Chr5:26312500-26312519	MsG0580025896.01.T01:intron	50.0%
	CACAACGATCAGTCACAGGG+AGG	+	Chr5:26312176-26312195	None:intergenic	55.0%
!	CAGTCACAGGGAGGTGTGCG+AGG	+	Chr5:26312167-26312186	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	26312006	26313158	26312006	ID=MsG0580025896.01;Name=MsG0580025896.01
Chr5	mRNA	26312006	26313158	26312006	ID=MsG0580025896.01.T01;Parent=MsG0580025896.01;Name=MsG0580025896.01.T01;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|2\|0\|224
Chr5	exon	26312877	26313158	26312877	ID=MsG0580025896.01.T01:exon:5197;Parent=MsG0580025896.01.T01
Chr5	exon	26312006	26312398	26312006	ID=MsG0580025896.01.T01:exon:5196;Parent=MsG0580025896.01.T01
Chr5	CDS	26312877	26313158	26312877	ID=MsG0580025896.01.T01:cds;Parent=MsG0580025896.01.T01
Chr5	CDS	26312006	26312398	26312006	ID=MsG0580025896.01.T01:cds;Parent=MsG0580025896.01.T01

Gene Sequence

>MsG0580025896.01.T01

ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGGAGGAAATGTGTTAAAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAAGTGCTACCCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTAATGTTTCAAAGCTCCTCGCACACCTCCCTGTGACTGATCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGTTCTGTTGCCCATATTTTTTCCCTCCAACAACAGGTGGTCAATTTGCAAGCACAGCTAGCTTTTCTGAGAGAACAAGCAGCTCAAAGGTGTCTCAATAATGCCCCAAATTCTGAAAACCCTAATGAGAAGAATTTTGAAAAACCTACTAATATTCTCCCTCAAGATCTTCAAAGTTGGTTCCAGATGGAAAATTCCAGCATGTGTTCTCAATTTCTTCCCGATTTCTCTTCTTCCACTAATCTCTCATCAACAACACAATATTACAATGGGACTACAAACACTCTCATGGATCTAAACCCTATTGGAAACTATGAAAATTCAGGAACCCTATTGGAAGAAAGCATCTCATCATTTTCTACTTTTGATGAGCGACGTAATAATTCAATGTCCTATGACAACATGCAAAGACAGTGGACCTATCAGTAA

Protein sequence

>MsG0580025896.01.T01

MMTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQSATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGSVAHIFSLQQQVVNLQAQLAFLREQAAQRCLNNAPNSENPNEKNFEKPTNILPQDLQSWFQMENSSMCSQFLPDFSSSTNLSSTTQYYNGTTNTLMDLNPIGNYENSGTLLEESISSFSTFDERRNNSMSYDNMQRQWTYQ*