AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004322.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004322.01.T01 MTR_1g076920 85.025 394 10 3 1 349 1 390 0.0 655
MsG0180004322.01.T01 MTR_8g077185 30.447 358 153 12 58 349 38 365 9.72e-40 144
MsG0180004322.01.T01 MTR_5g056200 31.023 303 140 11 84 339 50 330 2.32e-35 132
MsG0180004322.01.T01 MTR_4g036495 29.667 300 147 11 87 346 398 673 6.83e-23 100
MsG0180004322.01.T01 MTR_3g034670 24.148 352 167 14 79 349 118 450 6.32e-16 79.0
MsG0180004322.01.T01 MTR_4g011440 25.540 278 149 8 122 349 373 642 9.10e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004322.01.T01 AT5G38520 57.186 334 89 4 62 349 34 359 1.87e-122 357
MsG0180004322.01.T01 AT5G38520 56.176 340 95 4 62 349 34 371 7.50e-122 356
MsG0180004322.01.T01 AT5G19850 30.909 330 157 12 59 339 42 349 3.96e-39 142
MsG0180004322.01.T01 AT4G36530 28.533 375 172 18 30 347 28 363 5.65e-36 134
MsG0180004322.01.T01 AT4G36530 29.412 340 150 15 64 347 1 306 8.51e-36 132
MsG0180004322.01.T01 AT4G25290 29.703 303 163 14 79 349 386 670 7.12e-20 91.3
MsG0180004322.01.T01 AT4G12830 36.441 118 65 3 110 224 125 235 2.49e-14 73.9

Find 73 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTGATCTTCTTGGTTT+TGG 0.163333 1:-76397977 MsG0180004322.01.T01:CDS
TAAAGAAACAAAATAATTTA+TGG 0.207219 1:+76398791 None:intergenic
GTTTATGCTATTGATCTTCT+TGG 0.221335 1:-76397983 MsG0180004322.01.T01:CDS
ACAGTTGATCTTGGATTTCT+TGG 0.227874 1:-76397646 MsG0180004322.01.T01:intron
TGTTTCTACCACCATTGTTT+TGG 0.239122 1:+76398937 None:intergenic
TGTCTCATTGCTGCTGCTTC+AGG 0.241897 1:-76397567 MsG0180004322.01.T01:CDS
TCTCCCCATAAAAGTAAAAT+AGG 0.274171 1:+76396833 None:intergenic
CTGTTACTTGTCCATGGCTT+TGG 0.291905 1:-76398729 MsG0180004322.01.T01:CDS
TTGCAGAAGCAATTCCCTTT+TGG 0.333173 1:+76397313 None:intergenic
ACAAAGCAATTGTTGATGAT+TGG 0.341853 1:-76397386 MsG0180004322.01.T01:CDS
TCAATACAAACAGTTGATCT+TGG 0.347401 1:-76397655 MsG0180004322.01.T01:intron
AGTTACTCCTTCCCTTGCTT+TGG 0.349148 1:-76397356 MsG0180004322.01.T01:CDS
AAGTAACAGAGGAGGGTTAT+TGG 0.354968 1:+76398743 None:intergenic
GATCCCTTTACTCCAATTGA+TGG 0.363586 1:-76396806 MsG0180004322.01.T01:CDS
TCAAGTGAAACTCTAGTTAG+AGG 0.364835 1:-76397444 MsG0180004322.01.T01:CDS
TAATGATCCTGAAGTTTCTA+TGG 0.365035 1:+76398872 None:intergenic
CAGAAGCCAACAGTACTAAT+AGG 0.371016 1:-76397612 MsG0180004322.01.T01:CDS
GACACTGTCTGAGAATTATA+CGG 0.378882 1:-76398005 MsG0180004322.01.T01:CDS
GGCACCAGTTGCACCGGATT+AGG 0.382985 1:+76396869 None:intergenic
ACTAGAGTTTCACTTGAATC+TGG 0.383055 1:+76397450 None:intergenic
CAGGGCCGCCGGGCCTAATC+CGG 0.395689 1:-76396882 MsG0180004322.01.T01:CDS
CGGGCCTAATCCGGTGCAAC+TGG 0.402370 1:-76396873 MsG0180004322.01.T01:CDS
ATTGTGCTATTAAATTGTTC+TGG 0.404463 1:-76397420 MsG0180004322.01.T01:CDS
GCTGCTTCCATAGAAACTTC+AGG 0.412435 1:-76398879 MsG0180004322.01.T01:CDS
GGTCCATCAATTGGAGTAAA+GGG 0.415428 1:+76396803 None:intergenic
CAATGAAGAAGAGTGTTCTT+TGG 0.417111 1:+76398987 None:intergenic
ACAAGTGCTGTTCATTCAGT+TGG 0.421358 1:-76399080 MsG0180004322.01.T01:CDS
CAAGTGCTGTTCATTCAGTT+GGG 0.427250 1:-76399079 MsG0180004322.01.T01:CDS
TTTCCAACAGGTCCATCAAT+TGG 0.431388 1:+76396794 None:intergenic
GAAAGGTTCAACAGCATCAA+TGG 0.438799 1:-76399041 MsG0180004322.01.T01:CDS
GAAGAAAAGTACTTTCCAAC+AGG 0.449114 1:+76396782 None:intergenic
ACAGACATCGTAGAAAGAAA+TGG 0.455043 1:-76399108 MsG0180004322.01.T01:exon
TTGGTGCTTCCATTCCTCAC+TGG 0.462114 1:-76398710 MsG0180004322.01.T01:CDS
TAAAGCAGAAATGTCTTAAG+TGG 0.464903 1:-76398833 MsG0180004322.01.T01:CDS
CCTCCTCTGTTACTTGTCCA+TGG 0.474310 1:-76398735 MsG0180004322.01.T01:CDS
AAGAGTGTTCTTTGGTGTAG+TGG 0.482090 1:+76398995 None:intergenic
AGGTCCATCAATTGGAGTAA+AGG 0.483632 1:+76396802 None:intergenic
GACATTGTCCCCATGATGAC+AGG 0.489475 1:-76396709 MsG0180004322.01.T01:CDS
ACTCCAATTGATGGACCTGT+TGG 0.491390 1:-76396797 MsG0180004322.01.T01:CDS
GAGTTTCCTATTAGTACTGT+TGG 0.496781 1:+76397606 None:intergenic
ATCAATTGTAACAGGGCCGC+CGG 0.498322 1:-76396893 MsG0180004322.01.T01:intron
GTACTAATAGGAAACTCTGT+TGG 0.499809 1:-76397600 MsG0180004322.01.T01:CDS
CTAATTCAGGCCTGTCATCA+TGG 0.500280 1:+76396699 None:intergenic
TTTCGTATACCATGGAAACA+TGG 0.503219 1:-76397931 MsG0180004322.01.T01:CDS
TAATTCAGGCCTGTCATCAT+GGG 0.516079 1:+76396700 None:intergenic
GGTTTCTCAAACAACTTGAA+AGG 0.517413 1:-76399058 MsG0180004322.01.T01:CDS
CTGTTCATGCTTGAAGAGGT+TGG 0.520266 1:-76396731 MsG0180004322.01.T01:CDS
AGAAATGTCTTAAGTGGAAG+TGG 0.522801 1:-76398827 MsG0180004322.01.T01:CDS
AAAATCAATCAGCCAAAGCA+AGG 0.543664 1:+76397344 None:intergenic
GGAGCATCAGATAAGCCACC+AGG 0.544264 1:-76397956 MsG0180004322.01.T01:CDS
TACCTCAGCCCATGTTTCCA+TGG 0.544343 1:+76397922 None:intergenic
CTTCCATTCCTCACTGGCGT+AGG 0.567976 1:-76398704 MsG0180004322.01.T01:intron
TCAATTGTAACAGGGCCGCC+GGG 0.570137 1:-76396892 MsG0180004322.01.T01:intron
GAATGGAAGCACCAAAGCCA+TGG 0.571641 1:+76398718 None:intergenic
TACCATGGAAACATGGGCTG+AGG 0.583191 1:-76397924 MsG0180004322.01.T01:intron
ATACCTACGCCAGTGAGGAA+TGG 0.584882 1:+76398701 None:intergenic
AAATCAATCAGCCAAAGCAA+GGG 0.595342 1:+76397345 None:intergenic
CAGTTGCACCGGATTAGGCC+CGG 0.596713 1:+76396874 None:intergenic
TGTCTTAAGTGGAAGTGGAA+AGG 0.597275 1:-76398822 MsG0180004322.01.T01:CDS
TTCGTATACCATGGAAACAT+GGG 0.598366 1:-76397930 MsG0180004322.01.T01:CDS
GTGCTATTAAATTGTTCTGG+TGG 0.607382 1:-76397417 MsG0180004322.01.T01:CDS
TCAACTGTTCATGCTTGAAG+AGG 0.616816 1:-76396735 MsG0180004322.01.T01:CDS
CAATCAGCCAAAGCAAGGGA+AGG 0.620564 1:+76397349 None:intergenic
CATGGACAAGTAACAGAGGA+GGG 0.632484 1:+76398736 None:intergenic
CACTTAAGCATCCAAAACAA+TGG 0.634989 1:-76398948 MsG0180004322.01.T01:CDS
TCCATGGTATACGAAAAGCC+TGG 0.647873 1:+76397938 None:intergenic
CCATGGACAAGTAACAGAGG+AGG 0.649384 1:+76398735 None:intergenic
TTAAGCATCCAAAACAATGG+TGG 0.671828 1:-76398945 MsG0180004322.01.T01:CDS
AATTCAGGCCTGTCATCATG+GGG 0.687756 1:+76396701 None:intergenic
ATGGTATACGAAAAGCCTGG+TGG 0.725251 1:+76397941 None:intergenic
AAGCCATGGACAAGTAACAG+AGG 0.730393 1:+76398732 None:intergenic
CAAACATACCTACGCCAGTG+AGG 0.731840 1:+76398696 None:intergenic
TTGCACCGGATTAGGCCCGG+CGG 0.783338 1:+76396877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAACAAAATAATTTA+TGG + Chr1:76396995-76397014 None:intergenic 10.0%
!!! ACTTATAAGAATTCATATTT+TGG - Chr1:76398812-76398831 MsG0180004322.01.T01:CDS 15.0%
!!! CATAACAAATTTAACTTATA+CGG - Chr1:76398097-76398116 MsG0180004322.01.T01:intron 15.0%
!! AAAAAAATTAATACTCCTTC+CGG + Chr1:76398775-76398794 None:intergenic 20.0%
!! AAATTGAGAGTAAAAGAATA+TGG - Chr1:76397511-76397530 MsG0180004322.01.T01:intron 20.0%
!! CAAAAAATTTAGGGAAATTA+TGG + Chr1:76398537-76398556 None:intergenic 20.0%
!! GTTTCCTATCAAAAAATTTA+GGG + Chr1:76398546-76398565 None:intergenic 20.0%
!! TATAAAATTGTGACATTTAG+AGG + Chr1:76397673-76397692 None:intergenic 20.0%
!! TGTTTCCTATCAAAAAATTT+AGG + Chr1:76398547-76398566 None:intergenic 20.0%
!!! AAAATAGGCAATGATATTTT+TGG + Chr1:76398938-76398957 None:intergenic 20.0%
!!! ATTGCCTATTTTACTTTTAT+GGG - Chr1:76398946-76398965 MsG0180004322.01.T01:CDS 20.0%
!!! ATTTCCCTAAATTTTTTGAT+AGG - Chr1:76398539-76398558 MsG0180004322.01.T01:intron 20.0%
!!! CAACTATTTTTCTCAAAATT+GGG - Chr1:76397717-76397736 MsG0180004322.01.T01:intron 20.0%
!!! GATTTTTTATTGAACCAAAA+GGG - Chr1:76398456-76398475 MsG0180004322.01.T01:intron 20.0%
!!! TCAACTATTTTTCTCAAAAT+TGG - Chr1:76397716-76397735 MsG0180004322.01.T01:intron 20.0%
!!! TCTCTAAAATAGTTATATTG+CGG + Chr1:76397960-76397979 None:intergenic 20.0%
!!! TGATTTTTTATTGAACCAAA+AGG - Chr1:76398455-76398474 MsG0180004322.01.T01:intron 20.0%
! AAAATATGAGTTATTGACAG+TGG + Chr1:76397113-76397132 None:intergenic 25.0%
! AAAGGTAATCTCTTTAGATT+AGG - Chr1:76398511-76398530 MsG0180004322.01.T01:intron 25.0%
! AATTGATACAAATGCATCTA+AGG + Chr1:76398877-76398896 None:intergenic 25.0%
! AATTGTAAAAGAAACTGATG+AGG - Chr1:76397425-76397444 MsG0180004322.01.T01:CDS 25.0%
! AGAATATAAAGTGACAAACA+AGG + Chr1:76397185-76397204 None:intergenic 25.0%
! CATTTGTATCAATTGTAACA+GGG - Chr1:76398883-76398902 MsG0180004322.01.T01:CDS 25.0%
! TTTAATGATGTCGAACTAAA+AGG + Chr1:76397899-76397918 None:intergenic 25.0%
!! ACTCTATTTCTCAATCATAA+AGG + Chr1:76397577-76397596 None:intergenic 25.0%
!! ATTGTGCTATTAAATTGTTC+TGG - Chr1:76398363-76398382 MsG0180004322.01.T01:intron 25.0%
!! ATTTTTGTCTACAAAACCAA+CGG + Chr1:76398714-76398733 None:intergenic 25.0%
!! CTTTTAGCAAAAAAAATGAG+TGG + Chr1:76397152-76397171 None:intergenic 25.0%
!!! AATTTTTCATGGACTAATTC+AGG + Chr1:76399100-76399119 None:intergenic 25.0%
!!! ATACATTATTTCTGAATGCA+TGG + Chr1:76397336-76397355 None:intergenic 25.0%
!!! CATTGCCTATTTTACTTTTA+TGG - Chr1:76398945-76398964 MsG0180004322.01.T01:CDS 25.0%
!!! TTGCCTATTTTACTTTTATG+GGG - Chr1:76398947-76398966 MsG0180004322.01.T01:CDS 25.0%
AAGCGGAAGTTAATTATACT+AGG - Chr1:76397275-76397294 MsG0180004322.01.T01:intron 30.0%
AGTATAATTAACTTCCGCTT+AGG + Chr1:76397275-76397294 None:intergenic 30.0%
CTTGATATTTAGGCAAAATG+TGG + Chr1:76398015-76398034 None:intergenic 30.0%
GCATTTGTATCAATTGTAAC+AGG - Chr1:76398882-76398901 MsG0180004322.01.T01:CDS 30.0%
GTTTATGCTATTGATCTTCT+TGG - Chr1:76397800-76397819 MsG0180004322.01.T01:intron 30.0%
TAAAGCAGAAATGTCTTAAG+TGG - Chr1:76396950-76396969 MsG0180004322.01.T01:intron 30.0%
TAATGATCCTGAAGTTTCTA+TGG + Chr1:76396914-76396933 None:intergenic 30.0%
TACAAAACCAACGGTTAAAA+AGG + Chr1:76398705-76398724 None:intergenic 30.0%
TCAATACAAACAGTTGATCT+TGG - Chr1:76398128-76398147 MsG0180004322.01.T01:intron 30.0%
TCTCCCCATAAAAGTAAAAT+AGG + Chr1:76398953-76398972 None:intergenic 30.0%
TGATGCAAACCTTGATATTT+AGG + Chr1:76398025-76398044 None:intergenic 30.0%
TGGATCCAATATTATCAACA+AGG - Chr1:76397531-76397550 MsG0180004322.01.T01:intron 30.0%
TTAAATGCAGAGAGAATTTG+AGG - Chr1:76398581-76398600 MsG0180004322.01.T01:intron 30.0%
! CACATTTTGCCTAAATATCA+AGG - Chr1:76398013-76398032 MsG0180004322.01.T01:CDS 30.0%
! TGAACATTTTCTTGTTGAGA+AGG + Chr1:76399031-76399050 None:intergenic 30.0%
! TTCTCAAAATTGGGTTGTAA+AGG - Chr1:76397726-76397745 MsG0180004322.01.T01:intron 30.0%
!! AACAGCCTTGTTGATAATAT+TGG + Chr1:76397539-76397558 None:intergenic 30.0%
!! ACAAAGCAATTGTTGATGAT+TGG - Chr1:76398397-76398416 MsG0180004322.01.T01:intron 30.0%
!! TTTTTGAGCGTGTTAAACAA+AGG - Chr1:76398493-76398512 MsG0180004322.01.T01:intron 30.0%
!!! AGGCTGTTATTTTAACTACA+TGG - Chr1:76397551-76397570 MsG0180004322.01.T01:intron 30.0%
!!! TCAACCTTGTTTTAACTACA+TGG + Chr1:76397635-76397654 None:intergenic 30.0%
!!! TTGTCGTTTTCAAAGTTCAA+TGG - Chr1:76398744-76398763 MsG0180004322.01.T01:CDS 30.0%
AAAATCAATCAGCCAAAGCA+AGG + Chr1:76398442-76398461 None:intergenic 35.0%
AAATCAATCAGCCAAAGCAA+GGG + Chr1:76398441-76398460 None:intergenic 35.0%
AAATGAGTGGATGAGAATTG+TGG + Chr1:76397139-76397158 None:intergenic 35.0%
AACATCTTGAGTTCAGTGTA+TGG - Chr1:76398604-76398623 MsG0180004322.01.T01:intron 35.0%
ACAGACATCGTAGAAAGAAA+TGG - Chr1:76396675-76396694 MsG0180004322.01.T01:CDS 35.0%
ACAGTTGATCTTGGATTTCT+TGG - Chr1:76398137-76398156 MsG0180004322.01.T01:intron 35.0%
ACGTACATGATTGAGAAGAA+AGG + Chr1:76397612-76397631 None:intergenic 35.0%
ACGTCCATGTAGTTAAAACA+AGG - Chr1:76397628-76397647 MsG0180004322.01.T01:CDS 35.0%
ACTAGAGTTTCACTTGAATC+TGG + Chr1:76398336-76398355 None:intergenic 35.0%
AGAAATGTCTTAAGTGGAAG+TGG - Chr1:76396956-76396975 MsG0180004322.01.T01:intron 35.0%
CACTTAAGCATCCAAAACAA+TGG - Chr1:76396835-76396854 MsG0180004322.01.T01:CDS 35.0%
CTGCATTGTAACTGTAATTG+CGG - Chr1:76397989-76398008 MsG0180004322.01.T01:CDS 35.0%
GAAATGAATTAGTGCCTAAG+TGG - Chr1:76397297-76397316 MsG0180004322.01.T01:CDS 35.0%
GACACTGTCTGAGAATTATA+CGG - Chr1:76397778-76397797 MsG0180004322.01.T01:intron 35.0%
GAGTTCAGTGTATGGAAATA+AGG - Chr1:76398612-76398631 MsG0180004322.01.T01:intron 35.0%
GAGTTTCCTATTAGTACTGT+TGG + Chr1:76398180-76398199 None:intergenic 35.0%
GGTTTCTCAAACAACTTGAA+AGG - Chr1:76396725-76396744 MsG0180004322.01.T01:CDS 35.0%
GTACTAATAGGAAACTCTGT+TGG - Chr1:76398183-76398202 MsG0180004322.01.T01:intron 35.0%
TCAAAGTTCAATGGAATCAC+CGG - Chr1:76398753-76398772 MsG0180004322.01.T01:CDS 35.0%
TCAAGTGAAACTCTAGTTAG+AGG - Chr1:76398339-76398358 MsG0180004322.01.T01:intron 35.0%
TCCATGAAAAATTGCTTCCA+TGG - Chr1:76399107-76399126 MsG0180004322.01.T01:exon 35.0%
TGAAAAATTGCTTCCATGGT+TGG - Chr1:76399111-76399130 MsG0180004322.01.T01:exon 35.0%
TTAAGCATCCAAAACAATGG+TGG - Chr1:76396838-76396857 MsG0180004322.01.T01:CDS 35.0%
TTCAGTGTATGGAAATAAGG+AGG - Chr1:76398615-76398634 MsG0180004322.01.T01:intron 35.0%
TTCGTATACCATGGAAACAT+GGG - Chr1:76397853-76397872 MsG0180004322.01.T01:intron 35.0%
TTGTAGTTTGGACTGCAAAT+TGG + Chr1:76397931-76397950 None:intergenic 35.0%
TTTCGTATACCATGGAAACA+TGG - Chr1:76397852-76397871 MsG0180004322.01.T01:intron 35.0%
! ACCATGGAAGCAATTTTTCA+TGG + Chr1:76399111-76399130 None:intergenic 35.0%
! ATTGTGACATTTAGAGGCAT+CGG + Chr1:76397667-76397686 None:intergenic 35.0%
! GCTATTGATCTTCTTGGTTT+TGG - Chr1:76397806-76397825 MsG0180004322.01.T01:intron 35.0%
! GTGCTATTAAATTGTTCTGG+TGG - Chr1:76398366-76398385 MsG0180004322.01.T01:intron 35.0%
! TTTGGTTCCTCAGATCATTA+GGG - Chr1:76398830-76398849 MsG0180004322.01.T01:CDS 35.0%
! TTTTGGATGCTTAAGTGGTT+TGG + Chr1:76396832-76396851 None:intergenic 35.0%
!! CAATGAAGAAGAGTGTTCTT+TGG + Chr1:76396799-76396818 None:intergenic 35.0%
!! GAAGAAAAGTACTTTCCAAC+AGG + Chr1:76399004-76399023 None:intergenic 35.0%
!! TGTTTCTACCACCATTGTTT+TGG + Chr1:76396849-76396868 None:intergenic 35.0%
!!! CATTGTTTTGGATGCTTAAG+TGG + Chr1:76396837-76396856 None:intergenic 35.0%
!!! TTTTGGTTCCTCAGATCATT+AGG - Chr1:76398829-76398848 MsG0180004322.01.T01:CDS 35.0%
AAGTAACAGAGGAGGGTTAT+TGG + Chr1:76397043-76397062 None:intergenic 40.0%
ACAGTTCTTAATCGCAGTTG+CGG + Chr1:76398063-76398082 None:intergenic 40.0%
AGGTCCATCAATTGGAGTAA+AGG + Chr1:76398984-76399003 None:intergenic 40.0%
CAGAAGCCAACAGTACTAAT+AGG - Chr1:76398171-76398190 MsG0180004322.01.T01:intron 40.0%
CATGGTTGGCAACTCTTTAA+AGG - Chr1:76399125-76399144 MsG0180004322.01.T01:five_prime_UTR 40.0%
GAAAGGTTCAACAGCATCAA+TGG - Chr1:76396742-76396761 MsG0180004322.01.T01:CDS 40.0%
GAACTCGTGGAGGTAAATTA+AGG - Chr1:76398649-76398668 MsG0180004322.01.T01:intron 40.0%
GATCCCTTTACTCCAATTGA+TGG - Chr1:76398977-76398996 MsG0180004322.01.T01:CDS 40.0%
GGCATCATCATTTATCTGAC+AGG - Chr1:76397747-76397766 MsG0180004322.01.T01:intron 40.0%
GGTCCATCAATTGGAGTAAA+GGG + Chr1:76398983-76399002 None:intergenic 40.0%
TAATTCAGGCCTGTCATCAT+GGG + Chr1:76399086-76399105 None:intergenic 40.0%
TCAACTGTTCATGCTTGAAG+AGG - Chr1:76399048-76399067 MsG0180004322.01.T01:CDS 40.0%
TGTCTTAAGTGGAAGTGGAA+AGG - Chr1:76396961-76396980 MsG0180004322.01.T01:intron 40.0%
TTTCCAACAGGTCCATCAAT+TGG + Chr1:76398992-76399011 None:intergenic 40.0%
! ACAAGTGCTGTTCATTCAGT+TGG - Chr1:76396703-76396722 MsG0180004322.01.T01:CDS 40.0%
! CAAGTGCTGTTCATTCAGTT+GGG - Chr1:76396704-76396723 MsG0180004322.01.T01:CDS 40.0%
! CTTCGTTCCTTTTTAACCGT+TGG - Chr1:76398695-76398714 MsG0180004322.01.T01:intron 40.0%
! GGTTTTTGTGGATAGGAACA+AGG + Chr1:76396770-76396789 None:intergenic 40.0%
! GTGTAGTGGTTTTTGTGGAT+AGG + Chr1:76396777-76396796 None:intergenic 40.0%
! TTGCAGAAGCAATTCCCTTT+TGG + Chr1:76398473-76398492 None:intergenic 40.0%
!! AAGAGTGTTCTTTGGTGTAG+TGG + Chr1:76396791-76396810 None:intergenic 40.0%
!! CTTTGGTGTAGTGGTTTTTG+TGG + Chr1:76396782-76396801 None:intergenic 40.0%
!! TGTGCATTTTAGTGCCTAAG+CGG - Chr1:76397258-76397277 MsG0180004322.01.T01:intron 40.0%
AAGCCATGGACAAGTAACAG+AGG + Chr1:76397054-76397073 None:intergenic 45.0%
AATTCAGGCCTGTCATCATG+GGG + Chr1:76399085-76399104 None:intergenic 45.0%
AGTTACTCCTTCCCTTGCTT+TGG - Chr1:76398427-76398446 MsG0180004322.01.T01:intron 45.0%
AGTTCAATGGAATCACCGGA+AGG - Chr1:76398757-76398776 MsG0180004322.01.T01:CDS 45.0%
ATGGTATACGAAAAGCCTGG+TGG + Chr1:76397845-76397864 None:intergenic 45.0%
CATGGACAAGTAACAGAGGA+GGG + Chr1:76397050-76397069 None:intergenic 45.0%
CTAATTCAGGCCTGTCATCA+TGG + Chr1:76399087-76399106 None:intergenic 45.0%
CTGTTCATGCTTGAAGAGGT+TGG - Chr1:76399052-76399071 MsG0180004322.01.T01:CDS 45.0%
GACGTGATTATGCACCACTT+AGG + Chr1:76397314-76397333 None:intergenic 45.0%
GCTGCTTCCATAGAAACTTC+AGG - Chr1:76396904-76396923 MsG0180004322.01.T01:intron 45.0%
GTATGGAAATAAGGAGGCTG+TGG - Chr1:76398621-76398640 MsG0180004322.01.T01:intron 45.0%
TCCATGGTATACGAAAAGCC+TGG + Chr1:76397848-76397867 None:intergenic 45.0%
TCCTCAGATCATTAGGGAAC+CGG - Chr1:76398836-76398855 MsG0180004322.01.T01:CDS 45.0%
TTGCGGCTGCAATTGTAGTT+TGG + Chr1:76397943-76397962 None:intergenic 45.0%
! ACCAGGCTTTTCGTATACCA+TGG - Chr1:76397844-76397863 MsG0180004322.01.T01:intron 45.0%
! ACTCCAATTGATGGACCTGT+TGG - Chr1:76398986-76399005 MsG0180004322.01.T01:CDS 45.0%
! CTGTTACTTGTCCATGGCTT+TGG - Chr1:76397054-76397073 MsG0180004322.01.T01:intron 45.0%
! TGGGCTGAGGTATTTGTCTA+AGG - Chr1:76397872-76397891 MsG0180004322.01.T01:intron 45.0%
!!! ATTTTTGGCACCAGTTGCAC+CGG + Chr1:76398923-76398942 None:intergenic 45.0%
ATACCTACGCCAGTGAGGAA+TGG + Chr1:76397085-76397104 None:intergenic 50.0%
ATCAATTGTAACAGGGCCGC+CGG - Chr1:76398890-76398909 MsG0180004322.01.T01:CDS 50.0%
CAAACATACCTACGCCAGTG+AGG + Chr1:76397090-76397109 None:intergenic 50.0%
CAATCAGCCAAAGCAAGGGA+AGG + Chr1:76398437-76398456 None:intergenic 50.0%
CCATGGACAAGTAACAGAGG+AGG + Chr1:76397051-76397070 None:intergenic 50.0%
GACATTGTCCCCATGATGAC+AGG - Chr1:76399074-76399093 MsG0180004322.01.T01:CDS 50.0%
TACCTCAGCCCATGTTTCCA+TGG + Chr1:76397864-76397883 None:intergenic 50.0%
TGTGGATGATGAACTCGTGG+AGG - Chr1:76398639-76398658 MsG0180004322.01.T01:intron 50.0%
! CCTCCTCTGTTACTTGTCCA+TGG - Chr1:76397048-76397067 MsG0180004322.01.T01:intron 50.0%
! TACCATGGAAACATGGGCTG+AGG - Chr1:76397859-76397878 MsG0180004322.01.T01:intron 50.0%
! TGTCTCATTGCTGCTGCTTC+AGG - Chr1:76398216-76398235 MsG0180004322.01.T01:intron 50.0%
! TTGGTGCTTCCATTCCTCAC+TGG - Chr1:76397073-76397092 MsG0180004322.01.T01:intron 50.0%
!! GAATGGAAGCACCAAAGCCA+TGG + Chr1:76397068-76397087 None:intergenic 50.0%
AAGGCTCCTTCAGCATTCGC+CGG + Chr1:76398858-76398877 None:intergenic 55.0%
CTTCCATTCCTCACTGGCGT+AGG - Chr1:76397079-76397098 MsG0180004322.01.T01:intron 55.0%
GGCTGTGGATGATGAACTCG+TGG - Chr1:76398636-76398655 MsG0180004322.01.T01:intron 55.0%
TCAATTGTAACAGGGCCGCC+GGG - Chr1:76398891-76398910 MsG0180004322.01.T01:CDS 55.0%
! GCCGGTTCCCTAATGATCTG+AGG + Chr1:76398840-76398859 None:intergenic 55.0%
! GGAGCATCAGATAAGCCACC+AGG - Chr1:76397827-76397846 MsG0180004322.01.T01:intron 55.0%
AGGGAACCGGCGAATGCTGA+AGG - Chr1:76398849-76398868 MsG0180004322.01.T01:CDS 60.0%
GGCACCAGTTGCACCGGATT+AGG + Chr1:76398917-76398936 None:intergenic 60.0%
! CAGTTGCACCGGATTAGGCC+CGG + Chr1:76398912-76398931 None:intergenic 60.0%
CGGGCCTAATCCGGTGCAAC+TGG - Chr1:76398910-76398929 MsG0180004322.01.T01:CDS 65.0%
! TTGCACCGGATTAGGCCCGG+CGG + Chr1:76398909-76398928 None:intergenic 65.0%
CAGGGCCGCCGGGCCTAATC+CGG - Chr1:76398901-76398920 MsG0180004322.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 76396661 76399144 76396661 ID=MsG0180004322.01;Name=MsG0180004322.01
Chr1 mRNA 76396661 76399144 76396661 ID=MsG0180004322.01.T01;Parent=MsG0180004322.01;Name=MsG0180004322.01.T01;_AED=0.47;_eAED=0.47;_QI=33|0.75|0.8|1|1|1|5|0|349
Chr1 exon 76396661 76396901 76396661 ID=MsG0180004322.01.T01:exon:12652;Parent=MsG0180004322.01.T01
Chr1 exon 76397291 76397479 76397291 ID=MsG0180004322.01.T01:exon:12651;Parent=MsG0180004322.01.T01
Chr1 exon 76397564 76397664 76397564 ID=MsG0180004322.01.T01:exon:12650;Parent=MsG0180004322.01.T01
Chr1 exon 76397925 76398036 76397925 ID=MsG0180004322.01.T01:exon:12649;Parent=MsG0180004322.01.T01
Chr1 exon 76398705 76399144 76398705 ID=MsG0180004322.01.T01:exon:12648;Parent=MsG0180004322.01.T01
Chr1 five_prime_UTR 76399112 76399144 76399112 ID=MsG0180004322.01.T01:five_prime_utr;Parent=MsG0180004322.01.T01
Chr1 CDS 76398705 76399111 76398705 ID=MsG0180004322.01.T01:cds;Parent=MsG0180004322.01.T01
Chr1 CDS 76397925 76398036 76397925 ID=MsG0180004322.01.T01:cds;Parent=MsG0180004322.01.T01
Chr1 CDS 76397564 76397664 76397564 ID=MsG0180004322.01.T01:cds;Parent=MsG0180004322.01.T01
Chr1 CDS 76397291 76397479 76397291 ID=MsG0180004322.01.T01:cds;Parent=MsG0180004322.01.T01
Chr1 CDS 76396661 76396901 76396661 ID=MsG0180004322.01.T01:cds;Parent=MsG0180004322.01.T01
Gene Sequence

>MsG0180004322.01.T01

ATGGAAGTGACAAGTGCTGTTCATTCAGTTGGGTTTCTCAAACAACTTGAAAGGTTCAACAGCATCAATGGATCCTTGTTCCTATCCACAAAAACCACTACACCAAAGAACACTCTTCTTCATTGTTATCTTCATCCAAACCACTTAAGCATCCAAAACAATGGTGGTAGAAACAGTAAAAGTGTGATCATCAACTCAACTTCTTCTTCTGCTGCTTCCATAGAAACTTCAGGATCATTATCTGAAGTTGAAAAGATAAAGCAGAAATGTCTTAAGTGGAAGTGGAAAGGTGAATATTCCATAAATTATTTTGTTTCTTTAGACTCATCTTCAGATTCTGCAAAGTCCAATAACCCTCCTCTGTTACTTGTCCATGGCTTTGGTGCTTCCATTCCTCACTGGCGTAGGAATATCAAGACACTGTCTGAGAATTATACGGTTTATGCTATTGATCTTCTTGGTTTTGGAGCATCAGATAAGCCACCAGGCTTTTCGTATACCATGGAAACATGGGCTGAGTTGATCTTGGATTTCTTGGATGAAGTTGTTCAGAAGCCAACAGTACTAATAGGAAACTCTGTTGGAAGTCTTGCTTGTCTCATTGCTGCTGCTTCAGGCATTATTCGACCAGATTCAAGTGAAACTCTAGTTAGAGGAATTGTGCTATTAAATTGTTCTGGTGGCATGAACAACAAAGCAATTGTTGATGATTGGAGAATCAAGTTACTCCTTCCCTTGCTTTGGCTGATTGATTTTTTATTGAACCAAAAGGGAATTGCTTCTGCAATTTTTGAGCGTGTTAAACAAAGGGCCGCCGGGCCTAATCCGGTGCAACTGGTGCCAAAAATATCATTGCCTATTTTACTTTTATGGGGAGATGAAGATCCCTTTACTCCAATTGATGGACCTGTTGGAAAGTACTTTTCTTCATTGCCTTCTCAACAAGAAAATGTTCAACTGTTCATGCTTGAAGAGGTTGGACATTGTCCCCATGATGACAGGCCTGAATTAGTCCATGAAAAATTGCTTCCATGGTTGGCAACTCTTTAA

Protein sequence

>MsG0180004322.01.T01

MEVTSAVHSVGFLKQLERFNSINGSLFLSTKTTTPKNTLLHCYLHPNHLSIQNNGGRNSKSVIINSTSSSAASIETSGSLSEVEKIKQKCLKWKWKGEYSINYFVSLDSSSDSAKSNNPPLLLVHGFGASIPHWRRNIKTLSENYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLDEVVQKPTVLIGNSVGSLACLIAAASGIIRPDSSETLVRGIVLLNCSGGMNNKAIVDDWRIKLLLPLLWLIDFLLNQKGIASAIFERVKQRAAGPNPVQLVPKISLPILLLWGDEDPFTPIDGPVGKYFSSLPSQQENVQLFMLEEVGHCPHDDRPELVHEKLLPWLATL*