AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026036.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026036.01.T01 MTR_5g038210 93.836 438 27 0 1 438 86 523 0.0 799
MsG0580026036.01.T01 MTR_3g065930 30.918 207 128 6 242 436 38 241 1.06e-14 73.9
MsG0580026036.01.T01 MTR_3g065930 29.057 265 154 7 204 436 38 300 1.31e-14 74.7
MsG0580026036.01.T01 MTR_3g065930 30.918 207 128 6 242 436 96 299 4.39e-14 73.2
MsG0580026036.01.T01 MTR_1g063080 31.724 145 87 1 304 436 476 620 3.51e-13 72.0
MsG0580026036.01.T01 MTR_7g113330 38.372 86 50 2 356 438 23 108 1.69e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026036.01.T01 AT1G27070 42.605 453 220 11 1 436 102 531 1.14e-101 313
MsG0580026036.01.T01 AT5G03420 28.481 158 107 1 285 436 438 595 1.74e-13 72.8
MsG0580026036.01.T01 AT5G39790 37.273 110 60 3 331 436 168 272 5.87e-13 69.3
MsG0580026036.01.T01 AT5G39790 37.273 110 60 3 331 436 175 279 7.66e-13 68.9
MsG0580026036.01.T01 AT1G09020 40.476 84 48 1 355 436 18 101 3.60e-12 68.6

Find 93 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTGTAGGAAACCTTTC+TGG 0.142621 5:-29529300 None:intergenic
AATCCTGTTTCTCTGTTTAT+AGG 0.161117 5:-29531794 None:intergenic
GGGAATGTAGCTAAGGCTTC+TGG 0.265747 5:+29529441 MsG0580026036.01.T01:CDS
CTAATCAACTCTTCCTTTGT+AGG 0.289511 5:-29529312 None:intergenic
GAAGGTGGGTGGTTATCTTA+TGG 0.292331 5:+29529372 MsG0580026036.01.T01:CDS
AAAATCCCGTATTCAGCTTC+TGG 0.294524 5:+29531859 MsG0580026036.01.T01:CDS
GGAGGTGCGAGCGATGTTTC+AGG 0.297423 5:+29531731 MsG0580026036.01.T01:CDS
AATTCATGATTTCAGTTTCC+TGG 0.300961 5:-29533536 None:intergenic
TTCCGATGCTTGGGAATTCC+AGG 0.343242 5:+29533518 MsG0580026036.01.T01:CDS
TAGAGGTGGGAGAGTGGATT+TGG 0.344859 5:+29529332 MsG0580026036.01.T01:CDS
TGAAGCCGACTTGTGTAGTT+TGG 0.362406 5:+29533781 MsG0580026036.01.T01:CDS
CGTGTTGATCAAGTTTGATC+TGG 0.363057 5:-29531491 None:intergenic
AGTTCATTGTTGACGGTGAA+TGG 0.370081 5:+29534844 MsG0580026036.01.T01:CDS
GGCACGTAACGAACGTAGTC+TGG 0.370762 5:-29533565 None:intergenic
AGAAATAGTTCTTTCGGACT+TGG 0.376927 5:+29530546 MsG0580026036.01.T01:CDS
CAGATCAAGTTCATTGTTGA+CGG 0.387920 5:+29534837 MsG0580026036.01.T01:intron
CACCTCCTTTCAGAGTTTCA+CGG 0.398502 5:-29531715 None:intergenic
TAGCAAAGCTTTCCGATGCT+TGG 0.403982 5:+29533508 MsG0580026036.01.T01:CDS
CAACTAACCTCATAATTTCC+AGG 0.404914 5:-29534741 None:intergenic
AATACTTCGGAAGCAATATT+AGG 0.407953 5:-29533804 None:intergenic
AAATACAGAAATAGTTCTTT+CGG 0.409058 5:+29530540 MsG0580026036.01.T01:CDS
GCCAAGTTGGCAGTGTTAGA+AGG 0.411937 5:+29533585 MsG0580026036.01.T01:CDS
GTTGATTAGAGGTGGGAGAG+TGG 0.420107 5:+29529326 MsG0580026036.01.T01:CDS
GGAATGTAGCTAAGGCTTCT+GGG 0.421869 5:+29529442 MsG0580026036.01.T01:CDS
TCAAAAGTTTCAAAGCTTTG+TGG 0.424632 5:-29533761 None:intergenic
AGTTGGATTGATCAGAGAAC+TGG 0.425483 5:+29531570 MsG0580026036.01.T01:CDS
AGTTCTTTCGGACTTGGATT+CGG 0.426980 5:+29530552 MsG0580026036.01.T01:CDS
GATATAGAAGCTGAGGAGTC+TGG 0.427099 5:+29530489 MsG0580026036.01.T01:CDS
TCCTTCTAACACTGCCAACT+TGG 0.428742 5:-29533586 None:intergenic
AAGGTGGGTGGTTATCTTAT+GGG 0.429905 5:+29529373 MsG0580026036.01.T01:CDS
AGCAAAGCTTTCCGATGCTT+GGG 0.431128 5:+29533509 MsG0580026036.01.T01:CDS
TCTCTGTTTATAGGCTCGTC+AGG 0.435029 5:-29531785 None:intergenic
CTGATTCCAGAAGCTGAATA+CGG 0.436238 5:-29531865 None:intergenic
GAGCCTATAAACAGAGAAAC+AGG 0.440505 5:+29531791 MsG0580026036.01.T01:CDS
ATTGTCTACTACTATTGATA+AGG 0.443311 5:-29531431 None:intergenic
CACTGAGGGGACTTGTAGTT+CGG 0.445333 5:-29531464 None:intergenic
AGCCAGAGACATGGAGAAGT+TGG 0.447815 5:+29531553 MsG0580026036.01.T01:CDS
TATGGGTGGAATTTGAATCA+TGG 0.447905 5:+29529390 MsG0580026036.01.T01:CDS
TAGTAGGATCATTTGACAGC+TGG 0.448737 5:+29533829 MsG0580026036.01.T01:CDS
CGTTAGCATTGTAACTTCAC+TGG 0.454556 5:-29531924 None:intergenic
TGAGGGTATACTAAATCGTC+TGG 0.458071 5:+29530515 MsG0580026036.01.T01:CDS
ATCCAACTTCTCCATGTCTC+TGG 0.459928 5:-29531555 None:intergenic
GCTGAGGAGTCTGGCATTGA+GGG 0.460049 5:+29530498 MsG0580026036.01.T01:CDS
AAGATGGAGAAATCAAATAC+TGG 0.463137 5:+29534690 MsG0580026036.01.T01:CDS
ACCTCCTTTCAGAGTTTCAC+GGG 0.463569 5:-29531714 None:intergenic
AAGGAAGAGTTGATTAGAGG+TGG 0.464944 5:+29529318 MsG0580026036.01.T01:CDS
ACAAAGGAAGAGTTGATTAG+AGG 0.469468 5:+29529315 MsG0580026036.01.T01:CDS
ATTTGACAGCTGGTCTTCCC+AGG 0.470271 5:+29533839 MsG0580026036.01.T01:CDS
GGATTCGGAGAGAAAGAAGT+TGG 0.492506 5:+29530567 MsG0580026036.01.T01:CDS
GTTGAAGCTATTGTGAAAGA+AGG 0.493628 5:+29529354 MsG0580026036.01.T01:CDS
ATGGGTGGAATTTGAATCAT+GGG 0.502752 5:+29529391 MsG0580026036.01.T01:CDS
AGGAAGAGTTGATTAGAGGT+GGG 0.503229 5:+29529319 MsG0580026036.01.T01:CDS
CATTGCATTGCAGAGAAAGA+TGG 0.506836 5:+29534674 MsG0580026036.01.T01:intron
AGCTGAGGAGTCTGGCATTG+AGG 0.520081 5:+29530497 MsG0580026036.01.T01:CDS
GAAAATTGATCCATTGCGTC+CGG 0.525932 5:+29534866 MsG0580026036.01.T01:CDS
TGAAGATGGGAATGTAGCTA+AGG 0.526211 5:+29529434 MsG0580026036.01.T01:CDS
GTTAGAAGGAAAGATGTCAT+TGG 0.527307 5:+29533599 MsG0580026036.01.T01:CDS
TCTACTACTATTGATAAGGT+TGG 0.533867 5:-29531427 None:intergenic
CGACTTGAAATCATCAAAAG+AGG 0.537750 5:+29531755 MsG0580026036.01.T01:CDS
TCCAGAAAGGTTTCCTACAA+AGG 0.544066 5:+29529299 MsG0580026036.01.T01:CDS
TTGTTAACCACCGGACGCAA+TGG 0.544500 5:-29534876 None:intergenic
TTCCTGGAATTCCCAAGCAT+CGG 0.547354 5:-29533520 None:intergenic
GTGTTGATCAAGTTTGATCT+GGG 0.550546 5:-29531490 None:intergenic
GATCATAGAAGCATCAAAGA+TGG 0.555055 5:+29530627 MsG0580026036.01.T01:CDS
TTTGATCTGGGAACCACTGA+GGG 0.556751 5:-29531478 None:intergenic
TGATTCCAGAAGCTGAATAC+GGG 0.558491 5:-29531864 None:intergenic
TAGCCATTGTTGTTAACCAC+CGG 0.560908 5:-29534885 None:intergenic
ACGTTCGTTACGTGCCAAGT+TGG 0.571317 5:+29533572 MsG0580026036.01.T01:CDS
GCTGTATCCTGGAAATTATG+AGG 0.585979 5:+29534734 MsG0580026036.01.T01:CDS
CCTCTGTACTTCATTCGTTG+AGG 0.588567 5:+29531894 MsG0580026036.01.T01:CDS
GAAGCTATTGTGAAAGAAGG+TGG 0.589155 5:+29529357 MsG0580026036.01.T01:CDS
AATCCTCACACTGATTCAGC+TGG 0.595907 5:-29529516 None:intergenic
AATTGATCCATTGCGTCCGG+TGG 0.599116 5:+29534869 MsG0580026036.01.T01:CDS
GTGGGTGGTTATCTTATGGG+TGG 0.603777 5:+29529376 MsG0580026036.01.T01:CDS
AAGCTATTGTGAAAGAAGGT+GGG 0.607025 5:+29529358 MsG0580026036.01.T01:CDS
AGAATTCAGAGAATCCAGAA+AGG 0.619092 5:+29529286 MsG0580026036.01.T01:CDS
AAACAGGGATATAGAAGCTG+AGG 0.619435 5:+29530482 MsG0580026036.01.T01:intron
ACTTGTAGTTCGGTTCAATG+AGG 0.619670 5:-29531454 None:intergenic
CGTCCGGTGGTTAACAACAA+TGG 0.624388 5:+29534882 MsG0580026036.01.T01:CDS
ACTCAATTAAGCCAGAGACA+TGG 0.624701 5:+29531544 MsG0580026036.01.T01:CDS
GAATGTAGCTAAGGCTTCTG+GGG 0.634417 5:+29529443 MsG0580026036.01.T01:CDS
GTTTGATCTGGGAACCACTG+AGG 0.639680 5:-29531479 None:intergenic
CAGTGAAGTTACAATGCTAA+CGG 0.643771 5:+29531925 MsG0580026036.01.T01:CDS
GAATTCGTATGATTCGTCAT+CGG 0.647447 5:+29529479 MsG0580026036.01.T01:CDS
CCCCGTGAAACTCTGAAAGG+AGG 0.652678 5:+29531713 MsG0580026036.01.T01:CDS
CAGATCAAACTTGATCAACA+CGG 0.659066 5:+29531492 MsG0580026036.01.T01:CDS
TTAGGCCAAACTACACAAGT+CGG 0.669876 5:-29533786 None:intergenic
CTATTGTGAAAGAAGGTGGG+TGG 0.673848 5:+29529361 MsG0580026036.01.T01:CDS
GTTCCCCGTGAAACTCTGAA+AGG 0.681257 5:+29531710 MsG0580026036.01.T01:CDS
CCTCCTTTCAGAGTTTCACG+GGG 0.689583 5:-29531713 None:intergenic
CCTCAACGAATGAAGTACAG+AGG 0.710308 5:-29531894 None:intergenic
TTGATCTGGGAACCACTGAG+GGG 0.714204 5:-29531477 None:intergenic
CGAACTACAAGTCCCCTCAG+TGG 0.739867 5:+29531465 MsG0580026036.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATGTAAAGATAAT+TGG - Chr5:29532065-29532084 None:intergenic 10.0%
!! GATATGATAATAATAATTAT+AGG - Chr5:29531016-29531035 None:intergenic 10.0%
!!! ATTACAAAATTTTTGTATAT+GGG + Chr5:29534584-29534603 MsG0580026036.01.T01:intron 10.0%
!!! TGATAAAAAAGTAATATTTT+TGG - Chr5:29533360-29533379 None:intergenic 10.0%
!!! TTTTTTTTTAGTTTCAAATT+AGG - Chr5:29533248-29533267 None:intergenic 10.0%
!! ATAATAAAAAAGATAAAGAG+GGG + Chr5:29530601-29530620 MsG0580026036.01.T01:CDS 15.0%
!! ATTTGAACTTAAAAACTTAA+AGG + Chr5:29533285-29533304 MsG0580026036.01.T01:intron 15.0%
!! CAGAATTAAAAAAAAAATGT+TGG + Chr5:29530923-29530942 MsG0580026036.01.T01:intron 15.0%
!! GATAATAAAAAAGATAAAGA+GGG + Chr5:29530600-29530619 MsG0580026036.01.T01:CDS 15.0%
!! TAATATTATGAGCTAATAAT+AGG + Chr5:29531964-29531983 MsG0580026036.01.T01:intron 15.0%
!! TCATAATATTATTACTCTTA+TGG - Chr5:29531955-29531974 None:intergenic 15.0%
!! TGATAATAAAAAAGATAAAG+AGG + Chr5:29530599-29530618 MsG0580026036.01.T01:CDS 15.0%
!!! AAAGAAATTATGTTTTTCAA+TGG + Chr5:29531049-29531068 MsG0580026036.01.T01:intron 15.0%
!!! ATTTGTAATTTTGATACTTT+GGG - Chr5:29532626-29532645 None:intergenic 15.0%
!!! CATTACAAAATTTTTGTATA+TGG + Chr5:29534583-29534602 MsG0580026036.01.T01:intron 15.0%
!!! GCTTTTTTAATTAACAAAAT+AGG + Chr5:29533925-29533944 MsG0580026036.01.T01:intron 15.0%
!!! TATACAAAAATTTTGTAATG+CGG - Chr5:29534583-29534602 None:intergenic 15.0%
!!! TATTTGTAATTTTGATACTT+TGG - Chr5:29532627-29532646 None:intergenic 15.0%
!!! TCTTTACATTTTTATTTAGA+TGG + Chr5:29532069-29532088 MsG0580026036.01.T01:intron 15.0%
!!! TTAAGTTTTTAAGTTCAAAT+AGG - Chr5:29533285-29533304 None:intergenic 15.0%
!!! TTTTGAAGTTTCAATATATT+CGG + Chr5:29532769-29532788 MsG0580026036.01.T01:intron 15.0%
!!! TTTTTTTTAATTCTGACATA+TGG - Chr5:29530918-29530937 None:intergenic 15.0%
!!! TTTTTTTTTGTTTGAAAACT+TGG + Chr5:29532102-29532121 MsG0580026036.01.T01:intron 15.0%
!! AAATACAGAAATAGTTCTTT+CGG + Chr5:29530540-29530559 MsG0580026036.01.T01:CDS 20.0%
!! AGGGAGTAATATTAAAAAAA+AGG + Chr5:29531185-29531204 MsG0580026036.01.T01:intron 20.0%
!! ATAAAAAAGATAAAGAGGAA+TGG + Chr5:29530604-29530623 MsG0580026036.01.T01:CDS 20.0%
!! CGATAATAAAAAAGATAAAG+AGG + Chr5:29530815-29530834 MsG0580026036.01.T01:intron 20.0%
!! GAAACTTAAAAACTTCAAAT+AGG + Chr5:29533197-29533216 MsG0580026036.01.T01:intron 20.0%
!! TAAAAAAGATAAAGAGGAAT+GGG + Chr5:29530605-29530624 MsG0580026036.01.T01:CDS 20.0%
!! TAATAAAAAAGATAAAGAGG+GGG + Chr5:29530602-29530621 MsG0580026036.01.T01:CDS 20.0%
!! TATCATTTAAATATGTGATG+TGG - Chr5:29534642-29534661 None:intergenic 20.0%
!! TATTATCATATCATAAGAGA+GGG + Chr5:29531024-29531043 MsG0580026036.01.T01:intron 20.0%
!! TGAATGTGAAATTATTTGAA+TGG - Chr5:29533645-29533664 None:intergenic 20.0%
!! TGCAATTAAAATAGAAACTA+AGG - Chr5:29530693-29530712 None:intergenic 20.0%
!! TGGTAAAAAAATCACATTAA+AGG + Chr5:29532520-29532539 MsG0580026036.01.T01:intron 20.0%
!! TTAACAGAATATAACACATA+CGG - Chr5:29530464-29530483 None:intergenic 20.0%
!! TTATTATCATATCATAAGAG+AGG + Chr5:29531023-29531042 MsG0580026036.01.T01:intron 20.0%
!! TTCTACTAAACTAAGAAAAA+AGG + Chr5:29532416-29532435 MsG0580026036.01.T01:intron 20.0%
!! TTTCAATGGTAAATCAAATA+GGG + Chr5:29531063-29531082 MsG0580026036.01.T01:intron 20.0%
!!! ACATTTTTATTTAGATGGAA+GGG + Chr5:29532074-29532093 MsG0580026036.01.T01:intron 20.0%
!!! ATATAAGATTAAAGTACTCT+TGG + Chr5:29534376-29534395 MsG0580026036.01.T01:intron 20.0%
!!! ATATCATATTATTTTTTCCC+AGG + Chr5:29533691-29533710 MsG0580026036.01.T01:intron 20.0%
!!! GAAGTTTTTAAGTTTCAAAT+AGG - Chr5:29533193-29533212 None:intergenic 20.0%
!!! GTATTTTTGTCAAACTTAAA+AGG - Chr5:29533089-29533108 None:intergenic 20.0%
!!! TACATTTTTATTTAGATGGA+AGG + Chr5:29532073-29532092 MsG0580026036.01.T01:intron 20.0%
!!! TACTCAAGTTTTTTTTTGTT+GGG - Chr5:29534005-29534024 None:intergenic 20.0%
!!! TATCATATTATTTTTTCCCA+GGG + Chr5:29533692-29533711 MsG0580026036.01.T01:intron 20.0%
!!! TTATTTTTCTTATCGTTGAA+TGG + Chr5:29530411-29530430 MsG0580026036.01.T01:intron 20.0%
!!! TTTAAGTTTGACAAAAATAC+CGG + Chr5:29533089-29533108 MsG0580026036.01.T01:intron 20.0%
!!! TTTTATCAGAGTAATTTACA+TGG - Chr5:29531994-29532013 None:intergenic 20.0%
!!! TTTTCAATGGTAAATCAAAT+AGG + Chr5:29531062-29531081 MsG0580026036.01.T01:intron 20.0%
!!! TTTTTTTGGAGCTTTTAATT+TGG + Chr5:29529675-29529694 MsG0580026036.01.T01:intron 20.0%
! AAAGGACCAAAATACATATT+TGG - Chr5:29533071-29533090 None:intergenic 25.0%
! AAATCGTAAAAACAGTTTCA+AGG - Chr5:29534267-29534286 None:intergenic 25.0%
! AACTAAAAAGGATACATTTG+AGG - Chr5:29532671-29532690 None:intergenic 25.0%
! AACTATTAAGAAAGACTTAG+AGG + Chr5:29530095-29530114 MsG0580026036.01.T01:intron 25.0%
! ACTGAAGTATAACATCAAAT+TGG - Chr5:29532847-29532866 None:intergenic 25.0%
! AGTTTAAGCAAACTACTATA+TGG + Chr5:29531256-29531275 MsG0580026036.01.T01:intron 25.0%
! ATACACAATAGAAGAAACAT+TGG - Chr5:29531225-29531244 None:intergenic 25.0%
! ATTCGTCAATTTACAAATCA+CGG - Chr5:29534559-29534578 None:intergenic 25.0%
! ATTGTCTACTACTATTGATA+AGG - Chr5:29531434-29531453 None:intergenic 25.0%
! CAACGATAAGAAAAATAACA+CGG - Chr5:29530409-29530428 None:intergenic 25.0%
! CTAACACATAACATTGAATT+TGG + Chr5:29530281-29530300 MsG0580026036.01.T01:intron 25.0%
! GATTATGTCGTTAATAGATT+CGG + Chr5:29530014-29530033 MsG0580026036.01.T01:intron 25.0%
! GCAAAAAAATGTTGGAATTA+TGG + Chr5:29530721-29530740 MsG0580026036.01.T01:intron 25.0%
! GCAATAAATTAACAACTTAC+AGG + Chr5:29533221-29533240 MsG0580026036.01.T01:intron 25.0%
! GTGTTATATTCTGTTAAACA+GGG + Chr5:29530467-29530486 MsG0580026036.01.T01:intron 25.0%
! GTTTAAGCAAACTACTATAT+GGG + Chr5:29531257-29531276 MsG0580026036.01.T01:intron 25.0%
! TAAATACTAGACACTAACAT+AGG - Chr5:29534420-29534439 None:intergenic 25.0%
! TAGAAAAGATAGTTGAATCT+CGG + Chr5:29529948-29529967 MsG0580026036.01.T01:intron 25.0%
! TCATGAGTAAACATTCATTT+GGG + Chr5:29532571-29532590 MsG0580026036.01.T01:intron 25.0%
! TGAAACTTGAAAGTAAAAAC+AGG + Chr5:29529807-29529826 MsG0580026036.01.T01:intron 25.0%
! TGAATGTTTACTCATGAAAT+TGG - Chr5:29532568-29532587 None:intergenic 25.0%
! TGATCCTACTAAAAATACTT+CGG - Chr5:29533820-29533839 None:intergenic 25.0%
! TGTGTTATATTCTGTTAAAC+AGG + Chr5:29530466-29530485 MsG0580026036.01.T01:intron 25.0%
! TGTTAGTAGCAAAAAAATGT+TGG + Chr5:29530713-29530732 MsG0580026036.01.T01:intron 25.0%
! TGTTAGTGTCTAGTATTTAT+AGG + Chr5:29534421-29534440 MsG0580026036.01.T01:intron 25.0%
! TGTTGTCCAGATAAATATAT+TGG + Chr5:29534616-29534635 MsG0580026036.01.T01:intron 25.0%
! TTAAGTTTGACAAAAATACC+GGG + Chr5:29533090-29533109 MsG0580026036.01.T01:intron 25.0%
! TTCAATGGTAAATCAAATAG+GGG + Chr5:29531064-29531083 MsG0580026036.01.T01:intron 25.0%
! TTCATGAGTAAACATTCATT+TGG + Chr5:29532570-29532589 MsG0580026036.01.T01:intron 25.0%
!! GTTTATGCTATAGTTTTTGT+TGG - Chr5:29530078-29530097 None:intergenic 25.0%
!! TCATTGCTGCAAAATTTTAA+AGG - Chr5:29529716-29529735 None:intergenic 25.0%
!! TTTAAGTTTGACAAAAGTAC+CGG - Chr5:29533317-29533336 None:intergenic 25.0%
!!! AAAGTGTTGATTTTGAAGAT+GGG + Chr5:29529421-29529440 MsG0580026036.01.T01:CDS 25.0%
!!! ACTCAAGTTTTTTTTTGTTG+GGG - Chr5:29534004-29534023 None:intergenic 25.0%
!!! ATAGTTTTATATCAACACGT+TGG - Chr5:29534149-29534168 None:intergenic 25.0%
!!! ATTTTAAAGGTACATGCAAA+AGG - Chr5:29529703-29529722 None:intergenic 25.0%
!!! CATTTTTATTTAGATGGAAG+GGG + Chr5:29532075-29532094 MsG0580026036.01.T01:intron 25.0%
!!! GTACTCAAGTTTTTTTTTGT+TGG - Chr5:29534006-29534025 None:intergenic 25.0%
!!! TGTATCCTTTTTAGTTAGTT+TGG + Chr5:29532675-29532694 MsG0580026036.01.T01:intron 25.0%
!!! TTTCTGGGAACTTTTTATTT+AGG + Chr5:29533871-29533890 MsG0580026036.01.T01:intron 25.0%
!!! TTTTAGAATTTTCTGACGAA+AGG - Chr5:29533421-29533440 None:intergenic 25.0%
!!! TTTTTTTTTGTTGGGGTTAT+TGG - Chr5:29533997-29534016 None:intergenic 25.0%
AAAAACTTAAAGGACTAACC+CGG + Chr5:29533295-29533314 MsG0580026036.01.T01:intron 30.0%
AAAGAGTTAGGGAATGATTA+AGG + Chr5:29529639-29529658 MsG0580026036.01.T01:intron 30.0%
AACAAATGAAGACATATTCG+AGG - Chr5:29532702-29532721 None:intergenic 30.0%
AAGATGGAGAAATCAAATAC+TGG + Chr5:29534690-29534709 MsG0580026036.01.T01:CDS 30.0%
AATACTTCGGAAGCAATATT+AGG - Chr5:29533807-29533826 None:intergenic 30.0%
AATTATTTGAATGGTGTCTG+AGG - Chr5:29533636-29533655 None:intergenic 30.0%
AATTCATGATTTCAGTTTCC+TGG - Chr5:29533539-29533558 None:intergenic 30.0%
ACACATAACATTGAATTTGG+AGG + Chr5:29530284-29530303 MsG0580026036.01.T01:intron 30.0%
AGACGAGATTGAATTAGAAA+TGG + Chr5:29529891-29529910 MsG0580026036.01.T01:intron 30.0%
AGGACGAAATTATACATTCA+GGG - Chr5:29532651-29532670 None:intergenic 30.0%
ATCATGTCTTCATTGTGTAT+TGG + Chr5:29534210-29534229 MsG0580026036.01.T01:intron 30.0%
ATGGATGCAATATCAAATGT+TGG + Chr5:29534308-29534327 MsG0580026036.01.T01:intron 30.0%
ATGTGGCCAATATATTTATC+TGG - Chr5:29534625-29534644 None:intergenic 30.0%
ATGTTGTATTGTTCTTATCC+TGG + Chr5:29530216-29530235 MsG0580026036.01.T01:intron 30.0%
CAATGTGCATGTGATTTAAT+TGG + Chr5:29532975-29532994 MsG0580026036.01.T01:intron 30.0%
CTTCCTTTGTGTTATAATCT+GGG + Chr5:29531644-29531663 MsG0580026036.01.T01:intron 30.0%
GACACAGAATTGTTTGTAAA+TGG + Chr5:29531144-29531163 MsG0580026036.01.T01:intron 30.0%
GGAGAGTAAAATCAATATTG+TGG + Chr5:29529828-29529847 MsG0580026036.01.T01:intron 30.0%
GTATAATAGCATGATGCATT+TGG - Chr5:29534122-29534141 None:intergenic 30.0%
GTTTCAAATAGGTCCTTAAA+AGG - Chr5:29533182-29533201 None:intergenic 30.0%
TAGTAAACAAACGTGCATTT+AGG - Chr5:29533018-29533037 None:intergenic 30.0%
TCAAAAGTTTCAAAGCTTTG+TGG - Chr5:29533764-29533783 None:intergenic 30.0%
TCTACTACTATTGATAAGGT+TGG - Chr5:29531430-29531449 None:intergenic 30.0%
TGAAACTCTTTACTAATACC+AGG - Chr5:29532895-29532914 None:intergenic 30.0%
TGGATGCAATATCAAATGTT+GGG + Chr5:29534309-29534328 MsG0580026036.01.T01:intron 30.0%
TTAATTCGACTCTCAATTTC+TGG - Chr5:29531320-29531339 None:intergenic 30.0%
TTGTTTGAAAACTTGGTATC+CGG + Chr5:29532109-29532128 MsG0580026036.01.T01:intron 30.0%
! AATCCTGTTTCTCTGTTTAT+AGG - Chr5:29531797-29531816 None:intergenic 30.0%
! AATGCACTGTTATCCTTTTA+AGG + Chr5:29533166-29533185 MsG0580026036.01.T01:intron 30.0%
! ATTGGAACAAACAGTCATTT+TGG - Chr5:29532829-29532848 None:intergenic 30.0%
! ATTTACATTTTTGTGGCTTG+AGG + Chr5:29529608-29529627 MsG0580026036.01.T01:intron 30.0%
! GCATGTGATTTAATTGGTTT+AGG + Chr5:29532981-29533000 MsG0580026036.01.T01:intron 30.0%
! GGTACTTTTGTCAAACTTAA+AGG + Chr5:29533316-29533335 MsG0580026036.01.T01:intron 30.0%
! GTCTTGCATTTACATTTTTG+TGG + Chr5:29529601-29529620 MsG0580026036.01.T01:intron 30.0%
! TATTTGGCCAACATTTTTCT+AGG - Chr5:29533055-29533074 None:intergenic 30.0%
! TGAATTTGGAGGTTTTCATT+TGG + Chr5:29530295-29530314 MsG0580026036.01.T01:intron 30.0%
! TGTTGGCCAAATATGTATTT+TGG + Chr5:29533062-29533081 MsG0580026036.01.T01:intron 30.0%
! TTAACTTACTCCATCTTTTG+TGG - Chr5:29530853-29530872 None:intergenic 30.0%
! TTTAAAGTTTCAGTAGCAAG+AGG - Chr5:29531368-29531387 None:intergenic 30.0%
! TTTATATCAACACGTTGGTT+GGG - Chr5:29534144-29534163 None:intergenic 30.0%
! TTTTATATCAACACGTTGGT+TGG - Chr5:29534145-29534164 None:intergenic 30.0%
! TTTTCAAACGCAGATTTTGA+AGG + Chr5:29531594-29531613 MsG0580026036.01.T01:CDS 30.0%
!! AAAACTTAAAAGCACTAACC+CGG - Chr5:29533111-29533130 None:intergenic 30.0%
!! AATCCAAATGGGTTACAAAA+GGG + Chr5:29532298-29532317 MsG0580026036.01.T01:intron 30.0%
!! AGTAGTTTGCTTAAACTGAT+TGG - Chr5:29531253-29531272 None:intergenic 30.0%
!! TTAAGTTTGACAAAAGTACC+GGG - Chr5:29533316-29533335 None:intergenic 30.0%
!! TTGTAAATGGTCTTATACCT+AGG + Chr5:29531157-29531176 MsG0580026036.01.T01:intron 30.0%
!! TTTCTAGAGTCCTATAGTTA+GGG + Chr5:29531122-29531141 MsG0580026036.01.T01:intron 30.0%
!!! GAAAGTGTTGATTTTGAAGA+TGG + Chr5:29529420-29529439 MsG0580026036.01.T01:CDS 30.0%
!!! TTTTCTAGAGTCCTATAGTT+AGG + Chr5:29531121-29531140 MsG0580026036.01.T01:intron 30.0%
AAGAAAGACTTAGAGGTCAA+TGG + Chr5:29530102-29530121 MsG0580026036.01.T01:intron 35.0%
AAGCTATTGTGAAAGAAGGT+GGG + Chr5:29529358-29529377 MsG0580026036.01.T01:CDS 35.0%
AATTCTGTGTCCCTAACTAT+AGG - Chr5:29531135-29531154 None:intergenic 35.0%
ACTAGAGCCTAGAAAAATGT+TGG + Chr5:29533045-29533064 MsG0580026036.01.T01:intron 35.0%
AGAAATAGTTCTTTCGGACT+TGG + Chr5:29530546-29530565 MsG0580026036.01.T01:CDS 35.0%
AGAATTCAGAGAATCCAGAA+AGG + Chr5:29529286-29529305 MsG0580026036.01.T01:CDS 35.0%
AGATAACACCTTCTCTAGAT+AGG + Chr5:29534172-29534191 MsG0580026036.01.T01:intron 35.0%
AGGTGTATAGGAAAGAGTTA+GGG + Chr5:29529628-29529647 MsG0580026036.01.T01:intron 35.0%
ATGGGTGGAATTTGAATCAT+GGG + Chr5:29529391-29529410 MsG0580026036.01.T01:CDS 35.0%
CAAACTTAAAGGACCAAAAG+AGG + Chr5:29533327-29533346 MsG0580026036.01.T01:intron 35.0%
CAACTAACCTCATAATTTCC+AGG - Chr5:29534744-29534763 None:intergenic 35.0%
CAATATCAAATGTTGGGTCA+GGG + Chr5:29534315-29534334 MsG0580026036.01.T01:intron 35.0%
CACAACCTGAAATGTAAAAG+AGG - Chr5:29531623-29531642 None:intergenic 35.0%
CAGATCAAACTTGATCAACA+CGG + Chr5:29531492-29531511 MsG0580026036.01.T01:CDS 35.0%
CAGATCAAGTTCATTGTTGA+CGG + Chr5:29534837-29534856 MsG0580026036.01.T01:intron 35.0%
CAGTGAAGTTACAATGCTAA+CGG + Chr5:29531925-29531944 MsG0580026036.01.T01:CDS 35.0%
CCAGATTATAACACAAAGGA+AGG - Chr5:29531646-29531665 None:intergenic 35.0%
CCTTCCTTTGTGTTATAATC+TGG + Chr5:29531643-29531662 MsG0580026036.01.T01:intron 35.0%
CGACTTGAAATCATCAAAAG+AGG + Chr5:29531755-29531774 MsG0580026036.01.T01:CDS 35.0%
CTAATCAACTCTTCCTTTGT+AGG - Chr5:29529315-29529334 None:intergenic 35.0%
CTGACATATGGAAGAAACTA+AGG - Chr5:29530906-29530925 None:intergenic 35.0%
GAATTCGTATGATTCGTCAT+CGG + Chr5:29529479-29529498 MsG0580026036.01.T01:CDS 35.0%
GACACTAACATAGGTAAAAC+TGG - Chr5:29534411-29534430 None:intergenic 35.0%
GAGGACCAAACTAACTAAAA+AGG - Chr5:29532683-29532702 None:intergenic 35.0%
GAGGACGAAATTATACATTC+AGG - Chr5:29532652-29532671 None:intergenic 35.0%
GATCATAGAACCACAAAAGA+TGG + Chr5:29530840-29530859 MsG0580026036.01.T01:intron 35.0%
GTTAGAAGGAAAGATGTCAT+TGG + Chr5:29533599-29533618 MsG0580026036.01.T01:CDS 35.0%
GTTCACAAACAATTGTGCAT+GGG + Chr5:29534337-29534356 MsG0580026036.01.T01:intron 35.0%
GTTGAAGCTATTGTGAAAGA+AGG + Chr5:29529354-29529373 MsG0580026036.01.T01:CDS 35.0%
TAGATCAATCCTATAGGTAG+AGG + Chr5:29530049-29530068 MsG0580026036.01.T01:intron 35.0%
TAGTGTCTCCTATGTTGTAA+AGG + Chr5:29531398-29531417 MsG0580026036.01.T01:intron 35.0%
TATGGGTGGAATTTGAATCA+TGG + Chr5:29529390-29529409 MsG0580026036.01.T01:CDS 35.0%
TATTGTGGAGATGAGAATGA+TGG + Chr5:29529843-29529862 MsG0580026036.01.T01:intron 35.0%
TGACAGAGAAGATACAATGA+GGG + Chr5:29532742-29532761 MsG0580026036.01.T01:intron 35.0%
TGACCCAGATTATAACACAA+AGG - Chr5:29531650-29531669 None:intergenic 35.0%
TTATCCACTTCAAATTCTGC+AGG + Chr5:29530662-29530681 MsG0580026036.01.T01:intron 35.0%
! AATGATTAAGGTGCCAAACT+TGG + Chr5:29529651-29529670 MsG0580026036.01.T01:intron 35.0%
! AATTTGTCACCAGCTCTTTT+TGG + Chr5:29532374-29532393 MsG0580026036.01.T01:intron 35.0%
! ACAAAGGAAGAGTTGATTAG+AGG + Chr5:29529315-29529334 MsG0580026036.01.T01:CDS 35.0%
! AGAATGTTATGTCACTTGCA+TGG + Chr5:29534289-29534308 MsG0580026036.01.T01:intron 35.0%
! AGCTTTGCTCTGGATTTAAA+TGG - Chr5:29532190-29532209 None:intergenic 35.0%
! ATGATTAAGGTGCCAAACTT+GGG + Chr5:29529652-29529671 MsG0580026036.01.T01:intron 35.0%
! ATTTGTCACCAGCTCTTTTT+GGG + Chr5:29532375-29532394 MsG0580026036.01.T01:intron 35.0%
! CTTTTGTAACCCATTTGGAT+TGG - Chr5:29532299-29532318 None:intergenic 35.0%
! GCTTTGCTCTGGATTTAAAT+GGG - Chr5:29532189-29532208 None:intergenic 35.0%
! GGTAACCTCTTTTACATTTC+AGG + Chr5:29531615-29531634 MsG0580026036.01.T01:intron 35.0%
! GTGTTGATCAAGTTTGATCT+GGG - Chr5:29531493-29531512 None:intergenic 35.0%
! TTAATAGATTCGGTCAGACA+GGG + Chr5:29530024-29530043 MsG0580026036.01.T01:intron 35.0%
! TTGATACTTTGGGAACTAGA+GGG - Chr5:29532616-29532635 None:intergenic 35.0%
! TTTGATACTTTGGGAACTAG+AGG - Chr5:29532617-29532636 None:intergenic 35.0%
! TTTTGGCCAAATACCTCTTT+TGG - Chr5:29533343-29533362 None:intergenic 35.0%
!! AAAGGACCAAAAGAGGTATT+TGG + Chr5:29533334-29533353 MsG0580026036.01.T01:intron 35.0%
!! ATCCAAATGGGTTACAAAAG+GGG + Chr5:29532299-29532318 MsG0580026036.01.T01:intron 35.0%
!! ATCTGCTTCCATTTCTAGTT+TGG + Chr5:29532453-29532472 MsG0580026036.01.T01:intron 35.0%
!! CAATCCAAATGGGTTACAAA+AGG + Chr5:29532297-29532316 MsG0580026036.01.T01:intron 35.0%
!! CTTCTCTGTCAGTAGTTTTA+TGG - Chr5:29532733-29532752 None:intergenic 35.0%
!! CTTTTTGGGAGAGGTATAAA+AGG + Chr5:29532389-29532408 MsG0580026036.01.T01:intron 35.0%
!! GATCATAGAAGCATCAAAGA+TGG + Chr5:29530627-29530646 MsG0580026036.01.T01:CDS 35.0%
!! TCTTCATTGTGTATTGGCTT+TGG + Chr5:29534216-29534235 MsG0580026036.01.T01:intron 35.0%
!!! ACTGTTCGTCGATTTTGTAT+GGG + Chr5:29529774-29529793 MsG0580026036.01.T01:intron 35.0%
!!! GCTTCCGAAGTATTTTTAGT+AGG + Chr5:29533813-29533832 MsG0580026036.01.T01:CDS 35.0%
!!! TACTGTTCGTCGATTTTGTA+TGG + Chr5:29529773-29529792 MsG0580026036.01.T01:intron 35.0%
AAAATCCCGTATTCAGCTTC+TGG + Chr5:29531859-29531878 MsG0580026036.01.T01:CDS 40.0%
AAACAGGGATATAGAAGCTG+AGG + Chr5:29530482-29530501 MsG0580026036.01.T01:intron 40.0%
AAGGTGGGTGGTTATCTTAT+GGG + Chr5:29529373-29529392 MsG0580026036.01.T01:CDS 40.0%
AATTGGTAAGTGAGACTCTC+AGG - Chr5:29532048-29532067 None:intergenic 40.0%
ACAACCTGCAGAATTTGAAG+TGG - Chr5:29530669-29530688 None:intergenic 40.0%
ACATACCCAAAACACCTAAG+TGG - Chr5:29529979-29529998 None:intergenic 40.0%
ACTAGGTGGGGTAAACTATA+CGG - Chr5:29530173-29530192 None:intergenic 40.0%
ACTCAATTAAGCCAGAGACA+TGG + Chr5:29531544-29531563 MsG0580026036.01.T01:CDS 40.0%
ACTTGTAGTTCGGTTCAATG+AGG - Chr5:29531457-29531476 None:intergenic 40.0%
AGACTTAGAGGTCAATGGTT+TGG + Chr5:29530107-29530126 MsG0580026036.01.T01:intron 40.0%
AGGGGATAGATCAATCCTAT+AGG + Chr5:29530043-29530062 MsG0580026036.01.T01:intron 40.0%
AGTTCATTGTTGACGGTGAA+TGG + Chr5:29534844-29534863 MsG0580026036.01.T01:CDS 40.0%
AGTTCTTTCGGACTTGGATT+CGG + Chr5:29530552-29530571 MsG0580026036.01.T01:CDS 40.0%
AGTTGGATTGATCAGAGAAC+TGG + Chr5:29531570-29531589 MsG0580026036.01.T01:CDS 40.0%
ATATTACTCCCTCTGTTCCT+AGG - Chr5:29531177-29531196 None:intergenic 40.0%
CACAAAGACACAAACAATCC+AGG - Chr5:29530237-29530256 None:intergenic 40.0%
CACCTTTATCTTGCAGCAAT+GGG + Chr5:29530331-29530350 MsG0580026036.01.T01:intron 40.0%
CATTGCATTGCAGAGAAAGA+TGG + Chr5:29534674-29534693 MsG0580026036.01.T01:intron 40.0%
CCACTAAACCTATCTAGAGA+AGG - Chr5:29534183-29534202 None:intergenic 40.0%
CCTTCTCTAGATAGGTTTAG+TGG + Chr5:29534180-29534199 MsG0580026036.01.T01:intron 40.0%
CGTTAGCATTGTAACTTCAC+TGG - Chr5:29531927-29531946 None:intergenic 40.0%
CTGACAGAGAAGATACAATG+AGG + Chr5:29532741-29532760 MsG0580026036.01.T01:intron 40.0%
CTGATTCCAGAAGCTGAATA+CGG - Chr5:29531868-29531887 None:intergenic 40.0%
CTGCCTGTATATTCTTCAAC+AGG + Chr5:29533461-29533480 MsG0580026036.01.T01:intron 40.0%
CTGGATTGTTTGTGTCTTTG+TGG + Chr5:29530235-29530254 MsG0580026036.01.T01:intron 40.0%
GAAAATTGATCCATTGCGTC+CGG + Chr5:29534866-29534885 MsG0580026036.01.T01:CDS 40.0%
GAACACAATGACAAAAGCGA+AGG - Chr5:29534513-29534532 None:intergenic 40.0%
GAAGCTATTGTGAAAGAAGG+TGG + Chr5:29529357-29529376 MsG0580026036.01.T01:CDS 40.0%
GACATTGCCTCATGCATTTA+GGG + Chr5:29532802-29532821 MsG0580026036.01.T01:intron 40.0%
GAGCCTATAAACAGAGAAAC+AGG + Chr5:29531791-29531810 MsG0580026036.01.T01:CDS 40.0%
GAGGTGTATAGGAAAGAGTT+AGG + Chr5:29529627-29529646 MsG0580026036.01.T01:intron 40.0%
GCAATATCAAATGTTGGGTC+AGG + Chr5:29534314-29534333 MsG0580026036.01.T01:intron 40.0%
GCTCCAAAAAAACCCAAGTT+TGG - Chr5:29529667-29529686 None:intergenic 40.0%
GCTCCTGTTGAAGAATATAC+AGG - Chr5:29533467-29533486 None:intergenic 40.0%
GCTGTATCCTGGAAATTATG+AGG + Chr5:29534734-29534753 MsG0580026036.01.T01:CDS 40.0%
GGTTCACAAACAATTGTGCA+TGG + Chr5:29534336-29534355 MsG0580026036.01.T01:intron 40.0%
GTAGCATTAGAGAGACAGTT+TGG + Chr5:29529913-29529932 MsG0580026036.01.T01:intron 40.0%
GTCTTATACCTAGGAACAGA+GGG + Chr5:29531166-29531185 MsG0580026036.01.T01:intron 40.0%
GTGAAATGTCTGTTATGACC+TGG + Chr5:29532874-29532893 MsG0580026036.01.T01:intron 40.0%
TAGTAGGATCATTTGACAGC+TGG + Chr5:29533829-29533848 MsG0580026036.01.T01:CDS 40.0%
TATAGTTTACCCCACCTAGT+GGG + Chr5:29530173-29530192 MsG0580026036.01.T01:intron 40.0%
TCCAGAAAGGTTTCCTACAA+AGG + Chr5:29529299-29529318 MsG0580026036.01.T01:CDS 40.0%
TCCTTTGTAGGAAACCTTTC+TGG - Chr5:29529303-29529322 None:intergenic 40.0%
TCTTCCCTCCAAACTAGAAA+TGG - Chr5:29532464-29532483 None:intergenic 40.0%
TGAAGATGGGAATGTAGCTA+AGG + Chr5:29529434-29529453 MsG0580026036.01.T01:CDS 40.0%
TGACATTGCCTCATGCATTT+AGG + Chr5:29532801-29532820 MsG0580026036.01.T01:intron 40.0%
TGATTCCAGAAGCTGAATAC+GGG - Chr5:29531867-29531886 None:intergenic 40.0%
TTAGGCCAAACTACACAAGT+CGG - Chr5:29533789-29533808 None:intergenic 40.0%
TTCAAAGCGATATCGACAGT+CGG - Chr5:29533396-29533415 None:intergenic 40.0%
TTCACATGCTCTCTATCTCT+GGG + Chr5:29532911-29532930 MsG0580026036.01.T01:intron 40.0%
TTTCACATGCTCTCTATCTC+TGG + Chr5:29532910-29532929 MsG0580026036.01.T01:intron 40.0%
TTTCATCGAACAAACAGCGA+AGG - Chr5:29534482-29534501 None:intergenic 40.0%
! AAGGAAGAGTTGATTAGAGG+TGG + Chr5:29529318-29529337 MsG0580026036.01.T01:CDS 40.0%
! AGGAAGAGTTGATTAGAGGT+GGG + Chr5:29529319-29529338 MsG0580026036.01.T01:CDS 40.0%
! ATAGGGATACCCGAGATTTT+CGG - Chr5:29530998-29531017 None:intergenic 40.0%
! CGTGTTGATCAAGTTTGATC+TGG - Chr5:29531494-29531513 None:intergenic 40.0%
! CTTAGCCACTTAGGTGTTTT+GGG + Chr5:29529971-29529990 MsG0580026036.01.T01:intron 40.0%
! GTTAATAGATTCGGTCAGAC+AGG + Chr5:29530023-29530042 MsG0580026036.01.T01:intron 40.0%
! TAATAGATTCGGTCAGACAG+GGG + Chr5:29530025-29530044 MsG0580026036.01.T01:intron 40.0%
! TAGCCATTGTTGTTAACCAC+CGG - Chr5:29534888-29534907 None:intergenic 40.0%
! TGAGGGTATACTAAATCGTC+TGG + Chr5:29530515-29530534 MsG0580026036.01.T01:CDS 40.0%
! TTTTGGTCCCTAAATGCATG+AGG - Chr5:29532812-29532831 None:intergenic 40.0%
! TTTTGTGGCTTGAGGTGTAT+AGG + Chr5:29529616-29529635 MsG0580026036.01.T01:intron 40.0%
!! ATTTCTAGTTTGGAGGGAAG+AGG + Chr5:29532463-29532482 MsG0580026036.01.T01:intron 40.0%
!! CTTAGGTGTTTTGGGTATGT+AGG + Chr5:29529979-29529998 MsG0580026036.01.T01:intron 40.0%
!! GCTTCCATTTCTAGTTTGGA+GGG + Chr5:29532457-29532476 MsG0580026036.01.T01:intron 40.0%
!! TGCTTCCATTTCTAGTTTGG+AGG + Chr5:29532456-29532475 MsG0580026036.01.T01:intron 40.0%
!! TGTTGGTTTCCTCTACCTAT+AGG - Chr5:29530061-29530080 None:intergenic 40.0%
!!! GGTTTTAAGCGAGCTTGATT+TGG + Chr5:29530256-29530275 MsG0580026036.01.T01:intron 40.0%
!!! GTGCCAAACTTGGGTTTTTT+TGG + Chr5:29529661-29529680 MsG0580026036.01.T01:intron 40.0%
!!! GTTTTGCTGTGCCACTTATT+TGG + Chr5:29532489-29532508 MsG0580026036.01.T01:intron 40.0%
!!! TTCGTCGATTTTGTATGGGA+TGG + Chr5:29529778-29529797 MsG0580026036.01.T01:intron 40.0%
ACCACTAGGCCAATCCAAAT+GGG + Chr5:29532287-29532306 MsG0580026036.01.T01:intron 45.0%
ACCTCCTTTCAGAGTTTCAC+GGG - Chr5:29531717-29531736 None:intergenic 45.0%
AGCAAAGCTTTCCGATGCTT+GGG + Chr5:29533509-29533528 MsG0580026036.01.T01:CDS 45.0%
AGCCCATTGCTGCAAGATAA+AGG - Chr5:29530336-29530355 None:intergenic 45.0%
ATACCTCTCCCAAAAAGAGC+TGG - Chr5:29532386-29532405 None:intergenic 45.0%
ATCACACTTGAGACCTTGAG+AGG + Chr5:29532239-29532258 MsG0580026036.01.T01:intron 45.0%
ATCCAACTTCTCCATGTCTC+TGG - Chr5:29531558-29531577 None:intergenic 45.0%
ATCCAGAGCAAAGCTCTGTA+TGG + Chr5:29532195-29532214 MsG0580026036.01.T01:intron 45.0%
ATTCCTACACTAAGGGACAG+AGG - Chr5:29530970-29530989 None:intergenic 45.0%
CACAAACAATTGTGCATGGG+AGG + Chr5:29534340-29534359 MsG0580026036.01.T01:intron 45.0%
CACCTCCTTTCAGAGTTTCA+CGG - Chr5:29531718-29531737 None:intergenic 45.0%
CCCAGAAAGAGATTAGACCT+GGG - Chr5:29533859-29533878 None:intergenic 45.0%
CCCAGGTCTAATCTCTTTCT+GGG + Chr5:29533856-29533875 MsG0580026036.01.T01:intron 45.0%
CCTCAACGAATGAAGTACAG+AGG - Chr5:29531897-29531916 None:intergenic 45.0%
CCTCTGTACTTCATTCGTTG+AGG + Chr5:29531894-29531913 MsG0580026036.01.T01:CDS 45.0%
CTATTGTGAAAGAAGGTGGG+TGG + Chr5:29529361-29529380 MsG0580026036.01.T01:CDS 45.0%
GAAGGTGGGTGGTTATCTTA+TGG + Chr5:29529372-29529391 MsG0580026036.01.T01:CDS 45.0%
GAATCTCTGCCGAAAATCTC+GGG + Chr5:29530986-29531005 MsG0580026036.01.T01:intron 45.0%
GAATGTAGCTAAGGCTTCTG+GGG + Chr5:29529443-29529462 MsG0580026036.01.T01:CDS 45.0%
GACTGTCGATATCGCTTTGA+AGG + Chr5:29533395-29533414 MsG0580026036.01.T01:intron 45.0%
GAGGGACACTGACATATTCA+AGG - Chr5:29532598-29532617 None:intergenic 45.0%
GATATAGAAGCTGAGGAGTC+TGG + Chr5:29530489-29530508 MsG0580026036.01.T01:CDS 45.0%
GCACCTTTATCTTGCAGCAA+TGG + Chr5:29530330-29530349 MsG0580026036.01.T01:intron 45.0%
GGAATCTCTGCCGAAAATCT+CGG + Chr5:29530985-29531004 MsG0580026036.01.T01:intron 45.0%
GGAATGTAGCTAAGGCTTCT+GGG + Chr5:29529442-29529461 MsG0580026036.01.T01:CDS 45.0%
GGATTCGGAGAGAAAGAAGT+TGG + Chr5:29530567-29530586 MsG0580026036.01.T01:CDS 45.0%
GGCAGAGATTCCTACACTAA+GGG - Chr5:29530977-29530996 None:intergenic 45.0%
GGCAGCTACCTTTACAACAT+AGG - Chr5:29531409-29531428 None:intergenic 45.0%
GGTCTCAAGTGTGATTCTCT+TGG - Chr5:29532234-29532253 None:intergenic 45.0%
GTATAGTTTACCCCACCTAG+TGG + Chr5:29530172-29530191 MsG0580026036.01.T01:intron 45.0%
TAGCAAAGCTTTCCGATGCT+TGG + Chr5:29533508-29533527 MsG0580026036.01.T01:CDS 45.0%
TCCCAGAAAGAGATTAGACC+TGG - Chr5:29533860-29533879 None:intergenic 45.0%
TCCCAGGTCTAATCTCTTTC+TGG + Chr5:29533855-29533874 MsG0580026036.01.T01:intron 45.0%
TCCTTCTAACACTGCCAACT+TGG - Chr5:29533589-29533608 None:intergenic 45.0%
TCTCTGTTTATAGGCTCGTC+AGG - Chr5:29531788-29531807 None:intergenic 45.0%
TGGAGATGAGAATGATGGCT+TGG + Chr5:29529848-29529867 MsG0580026036.01.T01:intron 45.0%
TTCCTACACTAAGGGACAGA+GGG - Chr5:29530969-29530988 None:intergenic 45.0%
TTCCTGGAATTCCCAAGCAT+CGG - Chr5:29533523-29533542 None:intergenic 45.0%
TTTGATCTGGGAACCACTGA+GGG - Chr5:29531481-29531500 None:intergenic 45.0%
! AAGTCTTATCCCACTAGGTG+GGG - Chr5:29530185-29530204 None:intergenic 45.0%
! AAGTGTGATTCTCTTGGTGC+CGG - Chr5:29532228-29532247 None:intergenic 45.0%
! AGAATGATGGCTTGGATGTG+TGG + Chr5:29529856-29529875 MsG0580026036.01.T01:intron 45.0%
! CAACCAAGTCTTATCCCACT+AGG - Chr5:29530190-29530209 None:intergenic 45.0%
! CAAGTCTTATCCCACTAGGT+GGG - Chr5:29530186-29530205 None:intergenic 45.0%
! CACCCCTTTTGTAACCCATT+TGG - Chr5:29532304-29532323 None:intergenic 45.0%
! GCTTAGCCACTTAGGTGTTT+TGG + Chr5:29529970-29529989 MsG0580026036.01.T01:intron 45.0%
! GGTCTTATACCTAGGAACAG+AGG + Chr5:29531165-29531184 MsG0580026036.01.T01:intron 45.0%
!! AATCCTCACACTGATTCAGC+TGG - Chr5:29529519-29529538 None:intergenic 45.0%
!! AGGTGTTTTGGGTATGTAGG+AGG + Chr5:29529982-29530001 MsG0580026036.01.T01:intron 45.0%
!! ATTGGACCCCTTGGATTAGT+CGG - Chr5:29532143-29532162 None:intergenic 45.0%
!! GTGTTTTTGCAGCTGTATCC+TGG + Chr5:29534723-29534742 MsG0580026036.01.T01:CDS 45.0%
!! TGAAGCCGACTTGTGTAGTT+TGG + Chr5:29533781-29533800 MsG0580026036.01.T01:CDS 45.0%
!! TGTGCCACTTATTTGGAGCT+GGG + Chr5:29532496-29532515 MsG0580026036.01.T01:intron 45.0%
!! TTTTGGGTATGTAGGAGGAG+AGG + Chr5:29529987-29530006 MsG0580026036.01.T01:intron 45.0%
!! ATATGATAATAATAATTATA+GGG - Chr5:29531015-29531034 None:intergenic 5.0%
!!! TTATACATTTTTTTAATAAT+TGG - Chr5:29532337-29532356 None:intergenic 5.0%
!!! TTTTTTTTTTAATATTACAA+GGG - Chr5:29530749-29530768 None:intergenic 5.0%
!!! TTTTTTTTTTTAATATTACA+AGG - Chr5:29530750-29530769 None:intergenic 5.0%
AATAGCCTTCTGTGCATCCC+TGG - Chr5:29533712-29533731 None:intergenic 50.0%
AATTGATCCATTGCGTCCGG+TGG + Chr5:29534869-29534888 MsG0580026036.01.T01:CDS 50.0%
ACCAGACTGCAGCATCTGAA+GGG - Chr5:29530883-29530902 None:intergenic 50.0%
ACGTTCGTTACGTGCCAAGT+TGG + Chr5:29533572-29533591 MsG0580026036.01.T01:CDS 50.0%
AGCCAGAGACATGGAGAAGT+TGG + Chr5:29531553-29531572 MsG0580026036.01.T01:CDS 50.0%
AGCTCTGTATGGACTTAGCC+CGG + Chr5:29532206-29532225 MsG0580026036.01.T01:intron 50.0%
AGTGAGACTCTCAGGAAGTG+CGG - Chr5:29532040-29532059 None:intergenic 50.0%
ATAGCCTTCTGTGCATCCCT+GGG - Chr5:29533711-29533730 None:intergenic 50.0%
CAACCAGCTGAATCAGTGTG+AGG + Chr5:29529513-29529532 MsG0580026036.01.T01:intron 50.0%
CAACGACCGACTAATCCAAG+GGG + Chr5:29532134-29532153 MsG0580026036.01.T01:intron 50.0%
CACCACTAGGCCAATCCAAA+TGG + Chr5:29532286-29532305 MsG0580026036.01.T01:intron 50.0%
CACTGAGGGGACTTGTAGTT+CGG - Chr5:29531467-29531486 None:intergenic 50.0%
CCAACGACCGACTAATCCAA+GGG + Chr5:29532133-29532152 MsG0580026036.01.T01:intron 50.0%
CCACCTAGTGGGATAAGACT+TGG + Chr5:29530184-29530203 MsG0580026036.01.T01:intron 50.0%
CCATCCCAGCTCCAAATAAG+TGG - Chr5:29532503-29532522 None:intergenic 50.0%
CCTCCTTTCAGAGTTTCACG+GGG - Chr5:29531716-29531735 None:intergenic 50.0%
CGGCAGAGATTCCTACACTA+AGG - Chr5:29530978-29530997 None:intergenic 50.0%
CGTCCGGTGGTTAACAACAA+TGG + Chr5:29534882-29534901 MsG0580026036.01.T01:CDS 50.0%
GAATCTCGGCTTAGCCACTT+AGG + Chr5:29529962-29529981 MsG0580026036.01.T01:intron 50.0%
GGGAATGTAGCTAAGGCTTC+TGG + Chr5:29529441-29529460 MsG0580026036.01.T01:CDS 50.0%
GTCCATACAGAGCTTTGCTC+TGG - Chr5:29532200-29532219 None:intergenic 50.0%
GTGGGTGGTTATCTTATGGG+TGG + Chr5:29529376-29529395 MsG0580026036.01.T01:CDS 50.0%
GTTCCCCGTGAAACTCTGAA+AGG + Chr5:29531710-29531729 MsG0580026036.01.T01:CDS 50.0%
GTTGATTAGAGGTGGGAGAG+TGG + Chr5:29529326-29529345 MsG0580026036.01.T01:CDS 50.0%
GTTTGATCTGGGAACCACTG+AGG - Chr5:29531482-29531501 None:intergenic 50.0%
TTCCGATGCTTGGGAATTCC+AGG + Chr5:29533518-29533537 MsG0580026036.01.T01:CDS 50.0%
TTGATCTGGGAACCACTGAG+GGG - Chr5:29531480-29531499 None:intergenic 50.0%
TTGTTAACCACCGGACGCAA+TGG - Chr5:29534879-29534898 None:intergenic 50.0%
! CCAAGTCTTATCCCACTAGG+TGG - Chr5:29530187-29530206 None:intergenic 50.0%
! CCACTTATTTGGAGCTGGGA+TGG + Chr5:29532500-29532519 MsG0580026036.01.T01:intron 50.0%
! CTAAGGGACAGAGGGAGTAT+AGG - Chr5:29530961-29530980 None:intergenic 50.0%
! GCCAAGTTGGCAGTGTTAGA+AGG + Chr5:29533585-29533604 MsG0580026036.01.T01:CDS 50.0%
! TAGAGGTGGGAGAGTGGATT+TGG + Chr5:29529332-29529351 MsG0580026036.01.T01:CDS 50.0%
! TTGAGAGGAGCACACTCCAA+GGG + Chr5:29532254-29532273 MsG0580026036.01.T01:intron 50.0%
! TTTTCCCAGGGATGCACAGA+AGG + Chr5:29533704-29533723 MsG0580026036.01.T01:intron 50.0%
!! ACCCATTTGGATTGGCCTAG+TGG - Chr5:29532291-29532310 None:intergenic 50.0%
!! AGTGTGATTCTCTTGGTGCC+GGG - Chr5:29532227-29532246 None:intergenic 50.0%
!! ATTGGCCTAGTGGTGTTGCT+TGG - Chr5:29532281-29532300 None:intergenic 50.0%
!! ATTTGACAGCTGGTCTTCCC+AGG + Chr5:29533839-29533858 MsG0580026036.01.T01:CDS 50.0%
!! CCTTGGATTAGTCGGTCGTT+GGG - Chr5:29532135-29532154 None:intergenic 50.0%
!! CTGTGCCACTTATTTGGAGC+TGG + Chr5:29532495-29532514 MsG0580026036.01.T01:intron 50.0%
!! TCACCAGCTCTTTTTGGGAG+AGG + Chr5:29532380-29532399 MsG0580026036.01.T01:intron 50.0%
!! TTGGCCTAGTGGTGTTGCTT+GGG - Chr5:29532280-29532299 None:intergenic 50.0%
AGCTGAGGAGTCTGGCATTG+AGG + Chr5:29530497-29530516 MsG0580026036.01.T01:CDS 55.0%
CCAGACTGCAGCATCTGAAG+GGG - Chr5:29530882-29530901 None:intergenic 55.0%
CCCAACGACCGACTAATCCA+AGG + Chr5:29532132-29532151 MsG0580026036.01.T01:intron 55.0%
CGAACTACAAGTCCCCTCAG+TGG + Chr5:29531465-29531484 MsG0580026036.01.T01:CDS 55.0%
CTCCCTCTGTCCCTTAGTGT+AGG + Chr5:29530964-29530983 MsG0580026036.01.T01:intron 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - Chr5:29532255-29532274 None:intergenic 55.0%
GACCAGACTGCAGCATCTGA+AGG - Chr5:29530884-29530903 None:intergenic 55.0%
GGCACGTAACGAACGTAGTC+TGG - Chr5:29533568-29533587 None:intergenic 55.0%
! CCCCGTGAAACTCTGAAAGG+AGG + Chr5:29531713-29531732 MsG0580026036.01.T01:CDS 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + Chr5:29532253-29532272 MsG0580026036.01.T01:intron 55.0%
! GCTGAGGAGTCTGGCATTGA+GGG + Chr5:29530498-29530517 MsG0580026036.01.T01:CDS 55.0%
! GTGAGACTCTCAGGAAGTGC+GGG - Chr5:29532039-29532058 None:intergenic 55.0%
!! CCCTTGGATTAGTCGGTCGT+TGG - Chr5:29532136-29532155 None:intergenic 55.0%
AATCCCACCGTCCACTTGCG+GGG + Chr5:29532160-29532179 MsG0580026036.01.T01:intron 60.0%
AGGGCCCAAGCAACACCACT+AGG + Chr5:29532273-29532292 MsG0580026036.01.T01:intron 60.0%
CAATCCCACCGTCCACTTGC+GGG + Chr5:29532159-29532178 MsG0580026036.01.T01:intron 60.0%
CCAATCCCACCGTCCACTTG+CGG + Chr5:29532158-29532177 MsG0580026036.01.T01:intron 60.0%
CCCCTTCAGATGCTGCAGTC+TGG + Chr5:29530879-29530898 MsG0580026036.01.T01:intron 60.0%
! GGAGGTGCGAGCGATGTTTC+AGG + Chr5:29531731-29531750 MsG0580026036.01.T01:CDS 60.0%
!! AGTGGTGTTGCTTGGGCCCT+TGG - Chr5:29532273-29532292 None:intergenic 60.0%
!! GGATTAGTCGGTCGTTGGGC+CGG - Chr5:29532131-29532150 None:intergenic 60.0%
ATCCCACCGTCCACTTGCGG+GGG + Chr5:29532161-29532180 MsG0580026036.01.T01:intron 65.0%
CCGCAAGTGGACGGTGGGAT+TGG - Chr5:29532161-29532180 None:intergenic 65.0%
GACGGTGGGATTGGACCCCT+TGG - Chr5:29532152-29532171 None:intergenic 65.0%
TAAATGGGCCCCCCCGCAAG+TGG - Chr5:29532174-29532193 None:intergenic 65.0%
TCCCACCGTCCACTTGCGGG+GGG + Chr5:29532162-29532181 MsG0580026036.01.T01:intron 70.0%
CCCACCGTCCACTTGCGGGG+GGG + Chr5:29532163-29532182 MsG0580026036.01.T01:intron 75.0%
CCCCCCCGCAAGTGGACGGT+GGG - Chr5:29532166-29532185 None:intergenic 75.0%
TGGGCCCCCCCGCAAGTGGA+CGG - Chr5:29532170-29532189 None:intergenic 75.0%
! GCCCCCCCGCAAGTGGACGG+TGG - Chr5:29532167-29532186 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 29529282 29534938 29529282 ID=MsG0580026036.01;Name=MsG0580026036.01
Chr5 mRNA 29529282 29534938 29529282 ID=MsG0580026036.01.T01;Parent=MsG0580026036.01;Name=MsG0580026036.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|0.85|0.87|8|0|438
Chr5 exon 29529282 29529529 29529282 ID=MsG0580026036.01.T01:exon:33523;Parent=MsG0580026036.01.T01
Chr5 exon 29530488 29530650 29530488 ID=MsG0580026036.01.T01:exon:33524;Parent=MsG0580026036.01.T01
Chr5 exon 29531420 29531615 29531420 ID=MsG0580026036.01.T01:exon:33525;Parent=MsG0580026036.01.T01
Chr5 exon 29531699 29531946 29531699 ID=MsG0580026036.01.T01:exon:33526;Parent=MsG0580026036.01.T01
Chr5 exon 29533483 29533628 29533483 ID=MsG0580026036.01.T01:exon:33527;Parent=MsG0580026036.01.T01
Chr5 exon 29533713 29533860 29533713 ID=MsG0580026036.01.T01:exon:33528;Parent=MsG0580026036.01.T01
Chr5 exon 29534687 29534755 29534687 ID=MsG0580026036.01.T01:exon:33529;Parent=MsG0580026036.01.T01
Chr5 exon 29534840 29534938 29534840 ID=MsG0580026036.01.T01:exon:33530;Parent=MsG0580026036.01.T01
Chr5 CDS 29529282 29529529 29529282 ID=MsG0580026036.01.T01:cds;Parent=MsG0580026036.01.T01
Chr5 CDS 29530488 29530650 29530488 ID=MsG0580026036.01.T01:cds;Parent=MsG0580026036.01.T01
Chr5 CDS 29531420 29531615 29531420 ID=MsG0580026036.01.T01:cds;Parent=MsG0580026036.01.T01
Chr5 CDS 29531699 29531946 29531699 ID=MsG0580026036.01.T01:cds;Parent=MsG0580026036.01.T01
Chr5 CDS 29533483 29533628 29533483 ID=MsG0580026036.01.T01:cds;Parent=MsG0580026036.01.T01
Chr5 CDS 29533713 29533860 29533713 ID=MsG0580026036.01.T01:cds;Parent=MsG0580026036.01.T01
Chr5 CDS 29534687 29534755 29534687 ID=MsG0580026036.01.T01:cds;Parent=MsG0580026036.01.T01
Chr5 CDS 29534840 29534938 29534840 ID=MsG0580026036.01.T01:cds;Parent=MsG0580026036.01.T01
Gene Sequence

>MsG0580026036.01.T01

ATGCAGAATTCAGAGAATCCAGAAAGGTTTCCTACAAAGGAAGAGTTGATTAGAGGTGGGAGAGTGGATTTGGTTGAAGCTATTGTGAAAGAAGGTGGGTGGTTATCTTATGGGTGGAATTTGAATCATGGGTCTGTTGAAAGTGTTGATTTTGAAGATGGGAATGTAGCTAAGGCTTCTGGGGTTGCTGCTTCTTCGAATTCGTATGATTCGTCATCGGATAGCTCTTCTCAACCAGCTGAATCAGTGGATATAGAAGCTGAGGAGTCTGGCATTGAGGGTATACTAAATCGTCTGGAGAAATACAGAAATAGTTCTTTCGGACTTGGATTCGGAGAGAAAGAAGTTGGCTTTTCATCTGATAATAAAAAAGATAAAGAGGAATGGGATCATAGAAGCATCAAAGATGGAGTAGCTGCCAACCTTATCAATAGTAGTAGACAATCCTCATTGAACCGAACTACAAGTCCCCTCAGTGGTTCCCAGATCAAACTTGATCAACACGGATCTCAACTTGCTTCTAATATTTCAAGAAACTCAATTAAGCCAGAGACATGGAGAAGTTGGATTGATCAGAGAACTGGTTTTTCAAACGCAGATTTTGAAGATGCTGAAATTGTTCCCCGTGAAACTCTGAAAGGAGGTGCGAGCGATGTTTCAGGACGACTTGAAATCATCAAAAGAGGAGAGTTTCCTGACGAGCCTATAAACAGAGAAACAGGATTAGATTCTCTTGACATAATTGTAAATGCAAATCACAATGACATAAAATCCCGTATTCAGCTTCTGGAATCAGAGCTATCCTCTGTACTTCATTCGTTGAGGTCTAACACCAGTGAAGTTACAATGCTAACGGAGCAGAAGAATTCTTCTGATGATCTAGCAAAGCTTTCCGATGCTTGGGAATTCCAGGAAACTGAAATCATGAATTCTCAAGCCAGACTACGTTCGTTACGTGCCAAGTTGGCAGTGTTAGAAGGAAAGATGTCATTGGCAATAATGGATGCACAGAAGGCTATTGATGAGAAGCAGAAGAAGATTGATCATGTCCACAAAGCTTTGAAACTTTTGAAGCCGACTTGTGTAGTTTGGCCTAATATTGCTTCCGAAGTATTTTTAGTAGGATCATTTGACAGCTGGTCTTCCCAGAGAAAGATGGAGAAATCAAATACTGGTATATTTTCTGTGTTTTTGCAGCTGTATCCTGGAAATTATGAGATCAAGTTCATTGTTGACGGTGAATGGAAAATTGATCCATTGCGTCCGGTGGTTAACAACAATGGCTATGTGAATAATCTTCTTGTCGTTCATGATTGA
Protein sequence

>MsG0580026036.01.T01

MQNSENPERFPTKEELIRGGRVDLVEAIVKEGGWLSYGWNLNHGSVESVDFEDGNVAKASGVAASSNSYDSSSDSSSQPAESVDIEAEESGIEGILNRLEKYRNSSFGLGFGEKEVGFSSDNKKDKEEWDHRSIKDGVAANLINSSRQSSLNRTTSPLSGSQIKLDQHGSQLASNISRNSIKPETWRSWIDQRTGFSNADFEDAEIVPRETLKGGASDVSGRLEIIKRGEFPDEPINRETGLDSLDIIVNANHNDIKSRIQLLESELSSVLHSLRSNTSEVTMLTEQKNSSDDLAKLSDAWEFQETEIMNSQARLRSLRAKLAVLEGKMSLAIMDAQKAIDEKQKKIDHVHKALKLLKPTCVVWPNIASEVFLVGSFDSWSSQRKMEKSNTGIFSVFLQLYPGNYEIKFIVDGEWKIDPLRPVVNNNGYVNNLLVVHD*