AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026192.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026192.01.T01 MTR_5g041380 82.480 371 36 3 1 342 1 371 0.0 586
MsG0580026192.01.T01 MTR_5g041400 83.791 364 36 3 1 342 1 363 0.0 586
MsG0580026192.01.T01 MTR_5g041530 59.343 396 92 12 1 342 1 381 3.82e-129 374
MsG0580026192.01.T01 MTR_5g041420 64.452 301 63 9 1 259 1 299 1.71e-103 307
MsG0580026192.01.T01 MTR_4g082060 34.979 466 168 17 4 341 6 464 3.31e-62 205
MsG0580026192.01.T01 MTR_7g010950 34.086 487 167 20 2 340 4 484 1.30e-58 196
MsG0580026192.01.T01 MTR_3g435480 38.265 392 121 18 54 340 88 463 3.62e-56 189
MsG0580026192.01.T01 MTR_8g044220 31.364 440 189 17 4 342 12 439 8.64e-44 156
MsG0580026192.01.T01 MTR_6g012450 43.662 213 75 9 4 176 6 213 3.29e-34 131
MsG0580026192.01.T01 MTR_6g012450 40.606 165 60 8 202 340 341 493 3.24e-17 82.8
MsG0580026192.01.T01 MTR_7g086780 31.755 359 140 13 77 342 76 422 1.30e-33 129
MsG0580026192.01.T01 MTR_6g027460 69.014 71 19 1 84 151 79 149 5.58e-29 115
MsG0580026192.01.T01 MTR_2g016030 69.231 65 20 0 87 151 36 100 7.22e-29 109
MsG0580026192.01.T01 MTR_6g027450 52.000 100 38 3 57 151 48 142 5.39e-26 106
MsG0580026192.01.T01 MTR_8g079060 73.585 53 14 0 98 150 29 81 1.42e-22 94.7
MsG0580026192.01.T01 MTR_4g022370 50.000 74 37 0 78 151 62 135 1.24e-21 94.7
MsG0580026192.01.T01 MTR_8g015840 71.154 52 15 0 98 149 20 71 3.57e-21 90.9
MsG0580026192.01.T01 MTR_8g479350 61.905 63 24 0 98 160 68 130 6.66e-21 92.4
MsG0580026192.01.T01 MTR_4g109980 66.038 53 18 0 96 148 38 90 7.32e-21 92.0
MsG0580026192.01.T01 MTR_2g059540 71.429 49 14 0 98 146 31 79 1.22e-20 89.0
MsG0580026192.01.T01 MTR_2g096740 66.667 54 18 0 98 151 62 115 1.34e-20 90.5
MsG0580026192.01.T01 MTR_2g096740 66.667 54 18 0 98 151 77 130 1.57e-20 90.9
MsG0580026192.01.T01 MTR_3g091820 61.667 60 23 0 95 154 40 99 1.72e-20 90.5
MsG0580026192.01.T01 MTR_8g027295 56.250 64 28 0 88 151 14 77 2.09e-20 89.7
MsG0580026192.01.T01 MTR_2g093220 57.353 68 29 0 84 151 26 93 2.18e-20 90.1
MsG0580026192.01.T01 MTR_4g063780 47.674 86 44 1 78 162 55 140 4.03e-20 90.1
MsG0580026192.01.T01 MTR_4g089095 63.636 55 20 0 98 152 50 104 4.87e-20 89.4
MsG0580026192.01.T01 MTR_4g089095 63.636 55 20 0 98 152 16 70 4.94e-20 88.6
MsG0580026192.01.T01 MTR_7g024670 51.852 81 35 2 73 150 50 129 5.66e-20 90.1
MsG0580026192.01.T01 MTR_8g068210 46.875 96 45 3 82 171 13 108 6.95e-20 89.4
MsG0580026192.01.T01 MTR_4g461080 61.538 65 21 1 90 150 17 81 9.55e-20 88.2
MsG0580026192.01.T01 MTR_4g088580 71.154 52 15 0 100 151 57 108 1.03e-19 89.4
MsG0580026192.01.T01 MTR_1g077600 66.667 51 17 0 100 150 45 95 1.16e-19 87.8
MsG0580026192.01.T01 MTR_1g077600 66.667 51 17 0 100 150 45 95 1.25e-19 87.8
MsG0580026192.01.T01 MTR_7g059400 48.649 74 38 0 78 151 56 129 2.19e-19 88.2
MsG0580026192.01.T01 MTR_3g090430 56.757 74 30 2 79 151 32 104 2.85e-19 87.8
MsG0580026192.01.T01 MTR_2g013370 69.231 52 15 1 100 151 48 98 5.68e-19 85.9
MsG0580026192.01.T01 MTR_1g056810 63.793 58 20 1 95 151 8 65 9.02e-19 85.5
MsG0580026192.01.T01 MTR_2g014170 69.388 49 15 0 98 146 45 93 2.48e-18 84.7
MsG0580026192.01.T01 MTR_5g031440 60.000 55 22 0 94 148 39 93 3.49e-18 84.7
MsG0580026192.01.T01 MTR_2g014060 66.000 50 17 0 100 149 27 76 3.77e-18 84.3
MsG0580026192.01.T01 MTR_3g077750 40.708 113 50 4 37 148 15 111 5.59e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026192.01.T01 AT5G62430 46.713 289 123 9 70 342 25 298 4.81e-64 205
MsG0580026192.01.T01 AT5G39660 37.604 359 130 14 68 340 105 455 2.38e-49 171
MsG0580026192.01.T01 AT5G39660 37.604 359 130 14 68 340 105 455 2.38e-49 171
MsG0580026192.01.T01 AT5G39660 37.604 359 130 14 68 340 105 455 2.38e-49 171
MsG0580026192.01.T01 AT1G69570 34.559 408 186 19 2 342 4 397 5.04e-47 164
MsG0580026192.01.T01 AT1G26790 33.952 377 195 17 4 342 12 372 1.56e-44 157
MsG0580026192.01.T01 AT3G47500 59.813 107 26 3 71 166 73 173 1.84e-32 126
MsG0580026192.01.T01 AT3G47500 42.949 156 72 5 204 342 293 448 1.77e-20 92.4
MsG0580026192.01.T01 AT1G29160 71.212 66 19 0 86 151 50 115 7.60e-32 118
MsG0580026192.01.T01 AT2G34140 50.000 100 45 1 74 168 34 133 3.34e-31 116
MsG0580026192.01.T01 AT3G55370 35.294 153 92 2 5 153 27 176 1.33e-22 97.4
MsG0580026192.01.T01 AT1G51700 52.632 95 41 2 68 161 5 96 1.42e-22 94.0
MsG0580026192.01.T01 AT5G60200 41.176 136 66 4 70 199 22 149 1.63e-22 95.5
MsG0580026192.01.T01 AT3G55370 48.276 87 45 0 67 153 45 131 3.34e-22 95.9
MsG0580026192.01.T01 AT3G55370 48.276 87 45 0 67 153 45 131 4.48e-22 95.9
MsG0580026192.01.T01 AT5G60850 71.429 56 16 0 98 153 51 106 5.63e-22 94.7
MsG0580026192.01.T01 AT3G50410 73.077 52 14 0 98 149 30 81 1.61e-21 92.4
MsG0580026192.01.T01 AT5G02460 52.703 74 35 0 78 151 75 148 7.62e-21 92.8
MsG0580026192.01.T01 AT3G45610 38.889 126 68 2 69 194 17 133 8.83e-21 90.5
MsG0580026192.01.T01 AT3G21270 69.811 53 16 0 98 150 29 81 1.18e-20 89.0
MsG0580026192.01.T01 AT5G66940 67.925 53 17 0 98 150 32 84 2.33e-20 88.6
MsG0580026192.01.T01 AT1G07640 58.209 67 25 1 84 150 10 73 3.81e-20 89.4
MsG0580026192.01.T01 AT1G07640 43.689 103 51 3 50 151 35 131 3.92e-20 90.1
MsG0580026192.01.T01 AT2G28510 55.714 70 31 0 88 157 38 107 4.53e-20 89.4
MsG0580026192.01.T01 AT1G07640 43.689 103 51 3 50 151 43 139 4.84e-20 90.1
MsG0580026192.01.T01 AT2G28810 40.367 109 59 2 42 149 25 128 6.09e-20 89.4
MsG0580026192.01.T01 AT2G28810 40.367 109 59 2 42 149 42 145 7.52e-20 89.4
MsG0580026192.01.T01 AT2G37590 60.345 58 23 0 94 151 85 142 9.07e-20 89.0
MsG0580026192.01.T01 AT3G61850 43.689 103 53 1 94 196 58 155 9.14e-20 88.2
MsG0580026192.01.T01 AT3G61850 43.689 103 53 1 94 196 58 155 9.14e-20 88.2
MsG0580026192.01.T01 AT3G61850 60.656 61 24 0 94 154 70 130 9.60e-20 88.6
MsG0580026192.01.T01 AT5G65590 54.054 74 31 1 80 153 26 96 1.07e-19 88.6
MsG0580026192.01.T01 AT1G28310 68.519 54 17 0 98 151 27 80 1.12e-19 88.6
MsG0580026192.01.T01 AT3G61850 43.689 103 53 1 94 196 58 155 1.30e-19 88.2
MsG0580026192.01.T01 AT3G61850 60.656 61 24 0 94 154 70 130 1.39e-19 88.6
MsG0580026192.01.T01 AT1G28310 68.519 54 17 0 98 151 51 104 1.39e-19 88.6
MsG0580026192.01.T01 AT4G38000 57.812 64 26 1 93 155 36 99 1.72e-19 86.7
MsG0580026192.01.T01 AT4G24060 61.290 62 20 1 90 151 49 106 1.92e-19 88.2
MsG0580026192.01.T01 AT1G47655 69.388 49 15 0 98 146 29 77 2.67e-19 85.5
MsG0580026192.01.T01 AT1G64620 63.462 52 19 0 95 146 46 97 1.05e-18 86.3
MsG0580026192.01.T01 AT4G21050 47.191 89 43 2 82 170 10 94 2.13e-18 82.8
MsG0580026192.01.T01 AT1G21340 59.375 64 23 1 100 163 40 100 2.58e-18 84.0
MsG0580026192.01.T01 AT3G52440 63.462 52 19 0 100 151 27 78 3.19e-18 83.2
MsG0580026192.01.T01 AT4G00940 62.500 56 21 0 100 155 70 125 3.52e-18 84.0
MsG0580026192.01.T01 AT4G00940 62.500 56 21 0 100 155 70 125 3.52e-18 84.0
MsG0580026192.01.T01 AT4G00940 62.500 56 21 0 100 155 70 125 3.52e-18 84.0
MsG0580026192.01.T01 AT3G52440 63.462 52 19 0 100 151 46 97 4.29e-18 83.2
MsG0580026192.01.T01 AT2G46590 57.627 59 24 1 88 145 57 115 1.47e-17 83.2
MsG0580026192.01.T01 AT2G46590 57.627 59 24 1 88 145 69 127 1.64e-17 83.2
MsG0580026192.01.T01 AT5G62940 67.347 49 16 0 100 148 75 123 2.40e-17 82.4
MsG0580026192.01.T01 AT4G21040 49.296 71 33 2 82 151 10 78 1.10e-15 75.9
MsG0580026192.01.T01 AT4G21080 49.296 71 33 2 82 151 10 78 5.92e-15 73.9

Find 64 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAATGGATTTGCATCTA+TGG 0.227266 5:+32078450 MsG0580026192.01.T01:CDS
GTTCCAAGTAAACCTACTTT+AGG 0.234419 5:+32078277 MsG0580026192.01.T01:CDS
CCTTCAATTCTCAATGTCTT+AGG 0.282411 5:-32078364 None:intergenic
GAACCCTTTGCAGCTTCATT+AGG 0.331375 5:-32078388 None:intergenic
AAGCTGCAAAGGGTTCTAAT+TGG 0.333760 5:+32078395 MsG0580026192.01.T01:CDS
ATGAGTACTGTCTTGAACTT+TGG 0.343501 5:+32078034 MsG0580026192.01.T01:CDS
TTCCAAGTAAACCTACTTTA+GGG 0.369270 5:+32078278 MsG0580026192.01.T01:CDS
TTCCCTAAAGTAGGTTTACT+TGG 0.378626 5:-32078280 None:intergenic
AGCATACTATGGTGGTTGTT+TGG 0.399897 5:+32078213 MsG0580026192.01.T01:CDS
CCTAAGACATTGAGAATTGA+AGG 0.402849 5:+32078364 MsG0580026192.01.T01:CDS
TGTCAGAGATATTGGACTTC+CGG 0.405497 5:+32077923 MsG0580026192.01.T01:CDS
CTTTGTTCATCCTCTGTGGT+TGG 0.409218 5:-32077776 None:intergenic
GAATTCTTCAAAGAGATATA+AGG 0.418199 5:+32077144 MsG0580026192.01.T01:CDS
GACACAGGATAACACATTGC+TGG 0.439733 5:-32078175 None:intergenic
TTTGAAGAATTCACTTCAAG+TGG 0.441472 5:-32077133 None:intergenic
CAACCCAACATAGCATACTA+TGG 0.443178 5:+32078202 MsG0580026192.01.T01:CDS
TTCAATGGATTTGCATCTAT+GGG 0.443602 5:+32078451 MsG0580026192.01.T01:CDS
AATGAAGTTGAAGACATAAT+CGG 0.444731 5:-32078067 None:intergenic
CCTTGATAAAGCGGCAGGAT+TGG 0.449578 5:-32078521 None:intergenic
CTTGAATGTTTCCCTAAAGT+AGG 0.465584 5:-32078289 None:intergenic
TTCATAATCAAGTGCTGAGG+TGG 0.473402 5:-32077741 None:intergenic
GTGGTTGTTTGGTCCCATCA+TGG 0.476345 5:+32078224 MsG0580026192.01.T01:CDS
GCAGAAGTGACGGGGCTGGT+TGG 0.486295 5:-32077894 None:intergenic
TTTGCCAAGAAAATGAATGT+TGG 0.488827 5:+32078088 MsG0580026192.01.T01:CDS
CCAATCCTGCCGCTTTATCA+AGG 0.497721 5:+32078521 MsG0580026192.01.T01:CDS
CCACCATAGTATGCTATGTT+GGG 0.509061 5:-32078205 None:intergenic
TTCCCAATCAAATCCTCTCA+TGG 0.512251 5:-32078555 None:intergenic
CATACTTCTAGTGGTTCCTC+CGG 0.515524 5:-32077942 None:intergenic
ACCACTAGAAGTATGCTTGT+AGG 0.533223 5:+32077950 MsG0580026192.01.T01:CDS
TTTGTTTGGAGCTTTGTCCT+GGG 0.536610 5:-32077807 None:intergenic
TAGGTTGTACGCTCCATGAT+GGG 0.539001 5:-32078237 None:intergenic
TTGACGATTATGTGAGGCAT+CGG 0.539506 5:-32078011 None:intergenic
ACCACCATAGTATGCTATGT+TGG 0.544802 5:-32078206 None:intergenic
TAACACATTGCTGGATTCCA+AGG 0.544965 5:-32078166 None:intergenic
GGTCTCTTGTGTTCCATGAG+AGG 0.551572 5:+32078542 MsG0580026192.01.T01:CDS
AGAGACCTTGATAAAGCGGC+AGG 0.552940 5:-32078526 None:intergenic
CATAGTATGCTATGTTGGGT+TGG 0.561961 5:-32078201 None:intergenic
GGTCCTAATGAAGCTGCAAA+GGG 0.562729 5:+32078385 MsG0580026192.01.T01:CDS
AGAAGTATGCTTGTAGGCGC+AGG 0.563029 5:+32077956 MsG0580026192.01.T01:CDS
AGGTCCTAATGAAGCTGCAA+AGG 0.564122 5:+32078384 MsG0580026192.01.T01:CDS
GAGAAATCTTGATGAGCAAG+AGG 0.571155 5:-32077073 None:intergenic
TTAGGGAAACATTCAAGAGA+TGG 0.573312 5:+32078295 MsG0580026192.01.T01:CDS
CACAAGAGACCTTGATAAAG+CGG 0.578202 5:-32078530 None:intergenic
GGTTCTAATTGGTTAACACT+AGG 0.578922 5:+32078406 MsG0580026192.01.T01:CDS
CTAGGAAACAAGAGTGGTGG+AGG 0.581430 5:+32078424 MsG0580026192.01.T01:CDS
ATAGGTTGTACGCTCCATGA+TGG 0.581466 5:-32078238 None:intergenic
ATCACTTTGTTCATCCTCTG+TGG 0.583117 5:-32077780 None:intergenic
ACACAAGATTGAGTTGCGAT+AGG 0.596525 5:-32078256 None:intergenic
TGAACAAAGTGATATTTCCC+AGG 0.605408 5:+32077790 MsG0580026192.01.T01:CDS
GGATTCCAAGGAAACTGTTG+TGG 0.607794 5:-32078154 None:intergenic
TCATAATCAAGTGCTGAGGT+GGG 0.616189 5:-32077740 None:intergenic
ATTGGCTTTCAATACTGATG+AGG 0.623209 5:-32078503 None:intergenic
GCCTACAAGCATACTTCTAG+TGG 0.634581 5:-32077951 None:intergenic
ACACTAGGAAACAAGAGTGG+TGG 0.656394 5:+32078421 MsG0580026192.01.T01:CDS
TTCTTCATAATCAAGTGCTG+AGG 0.656773 5:-32077744 None:intergenic
AAATCTTGATGAGCAAGAGG+AGG 0.659290 5:-32077070 None:intergenic
ACTCATTTGACGATTATGTG+AGG 0.678683 5:-32078017 None:intergenic
CCCAACATAGCATACTATGG+TGG 0.683395 5:+32078205 MsG0580026192.01.T01:CDS
CAGAGATATTGGACTTCCGG+AGG 0.688190 5:+32077926 MsG0580026192.01.T01:CDS
ATGTTGGGTTGGAATGACAC+AGG 0.717550 5:-32078190 None:intergenic
GGGTGATGATAAGAATCATG+TGG 0.719528 5:+32078471 MsG0580026192.01.T01:CDS
AAGAGGAGGAGAAAACTCAG+AGG 0.721417 5:-32077056 None:intergenic
AGCCTCAAAACCAACCACAG+AGG 0.741026 5:+32077766 MsG0580026192.01.T01:CDS
TTAACACTAGGAAACAAGAG+TGG 0.767808 5:+32078418 MsG0580026192.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTTATTGTTAATTATTAA+CGG - Chr5:32077379-32077398 None:intergenic 10.0%
!! AAGAATAACCAATTAATATT+TGG + Chr5:32077458-32077477 MsG0580026192.01.T01:intron 15.0%
!! AATTATTGTTTATCAAATTC+AGG + Chr5:32077700-32077719 MsG0580026192.01.T01:intron 15.0%
!! TGATAAACAATAATTAGATT+AGG - Chr5:32077695-32077714 None:intergenic 15.0%
!! TTACAAGTAATTATGATTAA+AGG + Chr5:32077411-32077430 MsG0580026192.01.T01:intron 15.0%
!!! AAATTTAATTACTTCTAGTT+AGG + Chr5:32077202-32077221 MsG0580026192.01.T01:intron 15.0%
!!! TGAAAATTATACAAAGTTTT+TGG + Chr5:32077264-32077283 MsG0580026192.01.T01:intron 15.0%
!! ATAGACATCAAAATATGAAT+TGG - Chr5:32077506-32077525 None:intergenic 20.0%
!! TCAAAAAGCCAAATATTAAT+TGG - Chr5:32077469-32077488 None:intergenic 20.0%
!! TTAAATTAAAATTTAGGAGC+TGG - Chr5:32077597-32077616 None:intergenic 20.0%
!!! TTAACTTGTTGTTCATATTT+TGG + Chr5:32077664-32077683 MsG0580026192.01.T01:intron 20.0%
! AAGAAATAAACTCAAAGTTG+AGG - Chr5:32077559-32077578 None:intergenic 25.0%
! AATGAAGTTGAAGACATAAT+CGG - Chr5:32078070-32078089 None:intergenic 25.0%
! GAATTCTTCAAAGAGATATA+AGG + Chr5:32077144-32077163 MsG0580026192.01.T01:CDS 25.0%
!! AGTAACAAAATTTTGTGTCT+AGG - Chr5:32077859-32077878 None:intergenic 25.0%
!! ATTCAACCATAAAGCTTTTT+GGG + Chr5:32076996-32077015 MsG0580026192.01.T01:CDS 25.0%
AGTGTTGTGTGTTTGAAAAA+TGG - Chr5:32077026-32077045 None:intergenic 30.0%
TGATGTCTATAATCCTAAAC+TGG + Chr5:32077516-32077535 MsG0580026192.01.T01:intron 30.0%
TTCCAAGTAAACCTACTTTA+GGG + Chr5:32078278-32078297 MsG0580026192.01.T01:CDS 30.0%
TTTGAAGAATTCACTTCAAG+TGG - Chr5:32077136-32077155 None:intergenic 30.0%
TTTGCCAAGAAAATGAATGT+TGG + Chr5:32078088-32078107 MsG0580026192.01.T01:CDS 30.0%
! GATTCAACCATAAAGCTTTT+TGG + Chr5:32076995-32077014 MsG0580026192.01.T01:CDS 30.0%
! TGATCCAACATTCATTTTCT+TGG - Chr5:32078095-32078114 None:intergenic 30.0%
! TTCAATGGATTTGCATCTAT+GGG + Chr5:32078451-32078470 MsG0580026192.01.T01:CDS 30.0%
! TTTCAATGGATTTGCATCTA+TGG + Chr5:32078450-32078469 MsG0580026192.01.T01:CDS 30.0%
ACTCATTTGACGATTATGTG+AGG - Chr5:32078020-32078039 None:intergenic 35.0%
CCTAAGACATTGAGAATTGA+AGG + Chr5:32078364-32078383 MsG0580026192.01.T01:CDS 35.0%
CCTTCAATTCTCAATGTCTT+AGG - Chr5:32078367-32078386 None:intergenic 35.0%
CTTGAATGTTTCCCTAAAGT+AGG - Chr5:32078292-32078311 None:intergenic 35.0%
GCAAAAACTGTCAGAGATAT+TGG + Chr5:32077915-32077934 MsG0580026192.01.T01:CDS 35.0%
GTAGCAAATCAAACCAGTTT+AGG - Chr5:32077532-32077551 None:intergenic 35.0%
GTTCCAAGTAAACCTACTTT+AGG + Chr5:32078277-32078296 MsG0580026192.01.T01:CDS 35.0%
TGAACAAAGTGATATTTCCC+AGG + Chr5:32077790-32077809 MsG0580026192.01.T01:CDS 35.0%
TTAACACTAGGAAACAAGAG+TGG + Chr5:32078418-32078437 MsG0580026192.01.T01:CDS 35.0%
TTAGGGAAACATTCAAGAGA+TGG + Chr5:32078295-32078314 MsG0580026192.01.T01:CDS 35.0%
TTCCCTAAAGTAGGTTTACT+TGG - Chr5:32078283-32078302 None:intergenic 35.0%
! ATGAGTACTGTCTTGAACTT+TGG + Chr5:32078034-32078053 MsG0580026192.01.T01:CDS 35.0%
! GGACATGGAAGAATTTTGTT+TGG - Chr5:32077824-32077843 None:intergenic 35.0%
! GGTTCTAATTGGTTAACACT+AGG + Chr5:32078406-32078425 MsG0580026192.01.T01:CDS 35.0%
! TTCTTCATAATCAAGTGCTG+AGG - Chr5:32077747-32077766 None:intergenic 35.0%
! TTTTCAAACACACAACACTG+AGG + Chr5:32077027-32077046 MsG0580026192.01.T01:CDS 35.0%
! TTTTTCCACAACAGTTTCCT+TGG + Chr5:32078149-32078168 MsG0580026192.01.T01:CDS 35.0%
!! ATTGGCTTTCAATACTGATG+AGG - Chr5:32078506-32078525 None:intergenic 35.0%
AAATCTTGATGAGCAAGAGG+AGG - Chr5:32077073-32077092 None:intergenic 40.0%
ACCACCATAGTATGCTATGT+TGG - Chr5:32078209-32078228 None:intergenic 40.0%
AGCATACTATGGTGGTTGTT+TGG + Chr5:32078213-32078232 MsG0580026192.01.T01:CDS 40.0%
ATCACTTTGTTCATCCTCTG+TGG - Chr5:32077783-32077802 None:intergenic 40.0%
CAACCCAACATAGCATACTA+TGG + Chr5:32078202-32078221 MsG0580026192.01.T01:CDS 40.0%
CACAAGAGACCTTGATAAAG+CGG - Chr5:32078533-32078552 None:intergenic 40.0%
CATAGTATGCTATGTTGGGT+TGG - Chr5:32078204-32078223 None:intergenic 40.0%
CCACCATAGTATGCTATGTT+GGG - Chr5:32078208-32078227 None:intergenic 40.0%
GAGAAATCTTGATGAGCAAG+AGG - Chr5:32077076-32077095 None:intergenic 40.0%
GGGTGATGATAAGAATCATG+TGG + Chr5:32078471-32078490 MsG0580026192.01.T01:CDS 40.0%
GGTTCTCCCAAAAAGCTTTA+TGG - Chr5:32077005-32077024 None:intergenic 40.0%
TAACACATTGCTGGATTCCA+AGG - Chr5:32078169-32078188 None:intergenic 40.0%
TGTCAGAGATATTGGACTTC+CGG + Chr5:32077923-32077942 MsG0580026192.01.T01:CDS 40.0%
TTGACGATTATGTGAGGCAT+CGG - Chr5:32078014-32078033 None:intergenic 40.0%
! AAGCTGCAAAGGGTTCTAAT+TGG + Chr5:32078395-32078414 MsG0580026192.01.T01:CDS 40.0%
! ACACAAGATTGAGTTGCGAT+AGG - Chr5:32078259-32078278 None:intergenic 40.0%
! ACAGTTTTTGCAGAAGTGAC+GGG - Chr5:32077906-32077925 None:intergenic 40.0%
! ACCACTAGAAGTATGCTTGT+AGG + Chr5:32077950-32077969 MsG0580026192.01.T01:CDS 40.0%
! GACAGTTTTTGCAGAAGTGA+CGG - Chr5:32077907-32077926 None:intergenic 40.0%
! TTTGTTTGGAGCTTTGTCCT+GGG - Chr5:32077810-32077829 None:intergenic 40.0%
!! AGTGGTGGAGGATTTTTCAA+TGG + Chr5:32078436-32078455 MsG0580026192.01.T01:CDS 40.0%
!! TCATAATCAAGTGCTGAGGT+GGG - Chr5:32077743-32077762 None:intergenic 40.0%
!! TTCATAATCAAGTGCTGAGG+TGG - Chr5:32077744-32077763 None:intergenic 40.0%
!! TTTTGTTTGGAGCTTTGTCC+TGG - Chr5:32077811-32077830 None:intergenic 40.0%
AAGAGGAGGAGAAAACTCAG+AGG - Chr5:32077059-32077078 None:intergenic 45.0%
ACACTAGGAAACAAGAGTGG+TGG + Chr5:32078421-32078440 MsG0580026192.01.T01:CDS 45.0%
AGGTCCTAATGAAGCTGCAA+AGG + Chr5:32078384-32078403 MsG0580026192.01.T01:CDS 45.0%
ATAGGTTGTACGCTCCATGA+TGG - Chr5:32078241-32078260 None:intergenic 45.0%
CATACTTCTAGTGGTTCCTC+CGG - Chr5:32077945-32077964 None:intergenic 45.0%
CCCAACATAGCATACTATGG+TGG + Chr5:32078205-32078224 MsG0580026192.01.T01:CDS 45.0%
CTTTGTTCATCCTCTGTGGT+TGG - Chr5:32077779-32077798 None:intergenic 45.0%
GAACCCTTTGCAGCTTCATT+AGG - Chr5:32078391-32078410 None:intergenic 45.0%
GACACAGGATAACACATTGC+TGG - Chr5:32078178-32078197 None:intergenic 45.0%
GCCTACAAGCATACTTCTAG+TGG - Chr5:32077954-32077973 None:intergenic 45.0%
GGATTCCAAGGAAACTGTTG+TGG - Chr5:32078157-32078176 None:intergenic 45.0%
GGTCCTAATGAAGCTGCAAA+GGG + Chr5:32078385-32078404 MsG0580026192.01.T01:CDS 45.0%
TAGGTTGTACGCTCCATGAT+GGG - Chr5:32078240-32078259 None:intergenic 45.0%
! AGGCTTTTGCATCTTGGACA+TGG - Chr5:32077839-32077858 None:intergenic 45.0%
! CAGTTTTTGCAGAAGTGACG+GGG - Chr5:32077905-32077924 None:intergenic 45.0%
! GTGTCTAGGCTTTTGCATCT+TGG - Chr5:32077845-32077864 None:intergenic 45.0%
!! ATGTTGGGTTGGAATGACAC+AGG - Chr5:32078193-32078212 None:intergenic 45.0%
!!! ATCCTCTGTGGTTGGTTTTG+AGG - Chr5:32077771-32077790 None:intergenic 45.0%
!! AAGATATTAAATTAAAATTT+AGG - Chr5:32077603-32077622 None:intergenic 5.0%
AGAGACCTTGATAAAGCGGC+AGG - Chr5:32078529-32078548 None:intergenic 50.0%
AGCCTCAAAACCAACCACAG+AGG + Chr5:32077766-32077785 MsG0580026192.01.T01:CDS 50.0%
CAGAGATATTGGACTTCCGG+AGG + Chr5:32077926-32077945 MsG0580026192.01.T01:CDS 50.0%
CCTTGATAAAGCGGCAGGAT+TGG - Chr5:32078524-32078543 None:intergenic 50.0%
CTAGGAAACAAGAGTGGTGG+AGG + Chr5:32078424-32078443 MsG0580026192.01.T01:CDS 50.0%
GGTCTCTTGTGTTCCATGAG+AGG + Chr5:32078542-32078561 MsG0580026192.01.T01:CDS 50.0%
GTGGTTGTTTGGTCCCATCA+TGG + Chr5:32078224-32078243 MsG0580026192.01.T01:CDS 50.0%
! AGAAGTATGCTTGTAGGCGC+AGG + Chr5:32077956-32077975 MsG0580026192.01.T01:CDS 50.0%
!! CCAATCCTGCCGCTTTATCA+AGG + Chr5:32078521-32078540 MsG0580026192.01.T01:CDS 50.0%
!! TTTTGCAGAAGTGACGGGGC+TGG - Chr5:32077901-32077920 None:intergenic 55.0%
! GCAGAAGTGACGGGGCTGGT+TGG - Chr5:32077897-32077916 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 32076986 32078570 32076986 ID=MsG0580026192.01;Name=MsG0580026192.01
Chr5 mRNA 32076986 32078570 32076986 ID=MsG0580026192.01.T01;Parent=MsG0580026192.01;Name=MsG0580026192.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|2|0|342
Chr5 exon 32076986 32077165 32076986 ID=MsG0580026192.01.T01:exon:13275;Parent=MsG0580026192.01.T01
Chr5 exon 32077722 32078570 32077722 ID=MsG0580026192.01.T01:exon:13276;Parent=MsG0580026192.01.T01
Chr5 CDS 32076986 32077165 32076986 ID=MsG0580026192.01.T01:cds;Parent=MsG0580026192.01.T01
Chr5 CDS 32077722 32078570 32077722 ID=MsG0580026192.01.T01:cds;Parent=MsG0580026192.01.T01
Gene Sequence

>MsG0580026192.01.T01

ATGACTAATGATTCAACCATAAAGCTTTTTGGGAGAACCATTTTTCAAACACACAACACTGAGGATTGTTCCTCTGAGTTTTCTCCTCCTCTTGCTCATCAAGATTTCTCTGATCATTGTCTTCATTCATCTTTATCTTCGTCTTCTCCACTTGAAGTGAATTCTTCAAAGAGATATAAGGAATCATCAAGAAAAGAACCCACCTCAGCACTTGATTATGAAGAAGCCTCAAAACCAACCACAGAGGATGAACAAAGTGATATTTCCCAGGACAAAGCTCCAAACAAAATTCTTCCATGTCCAAGATGCAAAAGCCTAGACACAAAATTTTGTTACTACAATAATTACAACGCCAACCAGCCCCGTCACTTCTGCAAAAACTGTCAGAGATATTGGACTTCCGGAGGAACCACTAGAAGTATGCTTGTAGGCGCAGGTCGTCGCAAGAACAAAATATCTTCTTTTTCTTCCGATGCCTCACATAATCGTCAAATGAGTACTGTCTTGAACTTTGGATCAGATTCTCCGATTATGTCTTCAACTTCATTTGCCAAGAAAATGAATGTTGGATCAAATGATGAAACATTTGATAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCTTGGAATCCAGCAATGTGTTATCCTGTGTCATTCCAACCCAACATAGCATACTATGGTGGTTGTTTGGTCCCATCATGGAGCGTACAACCTATCGCAACTCAATCTTGTGTTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGGCGTAGAAAAGAACAACAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGACATTGAGAATTGAAGGTCCTAATGAAGCTGCAAAGGGTTCTAATTGGTTAACACTAGGAAACAAGAGTGGTGGAGGATTTTTCAATGGATTTGCATCTATGGGTGATGATAAGAATCATGTGGTTGAAGCTGCCTCATCAGTATTGAAAGCCAATCCTGCCGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATTTGA
Protein sequence

>MsG0580026192.01.T01

MTNDSTIKLFGRTIFQTHNTEDCSSEFSPPLAHQDFSDHCLHSSLSSSSPLEVNSSKRYKESSRKEPTSALDYEEASKPTTEDEQSDISQDKAPNKILPCPRCKSLDTKFCYYNNYNANQPRHFCKNCQRYWTSGGTTRSMLVGAGRRKNKISSFSSDASHNRQMSTVLNFGSDSPIMSSTSFAKKMNVGSNDETFDKSNQCFFPQQFPWNPAMCYPVSFQPNIAYYGGCLVPSWSVQPIATQSCVPSKPTLGKHSRDGVEKNNKESDNNSVLIPKTLRIEGPNEAAKGSNWLTLGNKSGGGFFNGFASMGDDKNHVVEAASSVLKANPAALSRSLVFHERI*