Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026328.01.T01 | XP_003614035.1 | 99.376 | 481 | 3 | 0 | 1 | 481 | 1 | 481 | 0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026328.01.T01 | Q96558 | 89.189 | 481 | 51 | 1 | 1 | 481 | 1 | 480 | 0 | 899 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026328.01.T01 | G7JWR8 | 99.376 | 481 | 3 | 0 | 1 | 481 | 1 | 481 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004142.01 | MsG0580026328.01 | 0.852662 | 3.983818e-61 | 8.384936e-58 |
| MsG0280010857.01 | MsG0580026328.01 | 0.841570 | 4.385041e-58 | 6.470025e-55 |
| MsG0580026328.01 | MsG0780039817.01 | 0.828054 | 1.112654e-54 | 1.093663e-51 |
| MsG0580026328.01 | MsG0780040586.01 | 0.808230 | 3.429992e-50 | 1.950527e-47 |
| MsG0580026328.01 | MsG0780040854.01 | 0.834298 | 3.249246e-56 | 3.839989e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026328.01.T01 | MTR_5g043970 | 99.376 | 481 | 3 | 0 | 1 | 481 | 1 | 481 | 0.0 | 989 |
| MsG0580026328.01.T01 | MTR_7g012950 | 87.526 | 481 | 59 | 1 | 1 | 481 | 1 | 480 | 0.0 | 890 |
| MsG0580026328.01.T01 | MTR_4g082990 | 86.694 | 481 | 63 | 1 | 1 | 481 | 1 | 480 | 0.0 | 884 |
| MsG0580026328.01.T01 | MTR_4g109360 | 74.895 | 474 | 116 | 3 | 3 | 474 | 4 | 476 | 0.0 | 743 |
| MsG0580026328.01.T01 | MTR_6g014890 | 56.311 | 103 | 43 | 1 | 12 | 114 | 16 | 116 | 2.00e-30 | 116 |
| MsG0580026328.01.T01 | MTR_6g033430 | 72.222 | 72 | 20 | 0 | 64 | 135 | 1 | 72 | 9.81e-24 | 94.7 |
| MsG0580026328.01.T01 | MTR_6g014930 | 53.465 | 101 | 24 | 1 | 17 | 117 | 1 | 78 | 4.55e-23 | 93.2 |
| MsG0580026328.01.T01 | MTR_6g014530 | 41.085 | 129 | 42 | 2 | 14 | 142 | 8 | 102 | 2.99e-20 | 86.3 |
| MsG0580026328.01.T01 | MTR_6g014840 | 52.874 | 87 | 32 | 1 | 1 | 87 | 1 | 78 | 3.54e-19 | 82.4 |
| MsG0580026328.01.T01 | MTR_6g014870 | 51.648 | 91 | 21 | 1 | 49 | 139 | 16 | 83 | 1.71e-18 | 82.4 |
| MsG0580026328.01.T01 | MTR_6g014850 | 35.593 | 177 | 63 | 4 | 174 | 348 | 71 | 198 | 8.62e-18 | 82.4 |
| MsG0580026328.01.T01 | MTR_6g014850 | 45.098 | 102 | 29 | 2 | 1 | 102 | 1 | 75 | 4.23e-14 | 72.0 |
| MsG0580026328.01.T01 | MTR_6g014820 | 44.565 | 92 | 15 | 1 | 1 | 92 | 23 | 78 | 2.25e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026328.01.T01 | AT3G29360 | 87.110 | 481 | 61 | 1 | 1 | 481 | 1 | 480 | 0.0 | 888 |
| MsG0580026328.01.T01 | AT3G29360 | 87.110 | 481 | 61 | 1 | 1 | 481 | 1 | 480 | 0.0 | 888 |
| MsG0580026328.01.T01 | AT5G15490 | 86.902 | 481 | 62 | 1 | 1 | 481 | 1 | 480 | 0.0 | 878 |
| MsG0580026328.01.T01 | AT5G39320 | 86.430 | 479 | 64 | 1 | 1 | 479 | 1 | 478 | 0.0 | 878 |
| MsG0580026328.01.T01 | AT1G26570 | 84.823 | 481 | 73 | 0 | 1 | 481 | 1 | 481 | 0.0 | 868 |
| MsG0580026328.01.T01 | AT3G01010 | 75.610 | 164 | 34 | 3 | 318 | 481 | 1 | 158 | 4.53e-86 | 261 |
Find 121 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAAGAGCAAATCTTAA+AGG | 0.175894 | 5:-34805925 | MsG0580026328.01.T01:CDS |
| TCAATGTTCAACACCGTTTC+AGG | 0.184824 | 5:-34806077 | MsG0580026328.01.T01:CDS |
| GCTTGCTGCCAATGCTTTCT+TGG | 0.197261 | 5:-34806378 | MsG0580026328.01.T01:CDS |
| CGATGTGTGCAAGGGTTTAT+TGG | 0.219664 | 5:-34805985 | MsG0580026328.01.T01:CDS |
| ACATGCCTGCAGTGGCTTAA+AGG | 0.246282 | 5:-34805599 | None:intergenic |
| AAAAGGAAGTATCTGTTGTT+TGG | 0.294778 | 5:-34805833 | MsG0580026328.01.T01:CDS |
| AGAGCAAATCTTAAAGGATT+TGG | 0.296184 | 5:-34805919 | MsG0580026328.01.T01:CDS |
| AAGTCCAACAACTTCGAAAA+AGG | 0.305052 | 5:-34805850 | MsG0580026328.01.T01:CDS |
| AAGCCTGCATTTATCTTTGA+TGG | 0.305181 | 5:-34805708 | MsG0580026328.01.T01:CDS |
| AATCCCGATCGAGTTCTTAT+TGG | 0.309844 | 5:-34806518 | MsG0580026328.01.T01:CDS |
| TTCGAAGTTGTTGGACTTGT+TGG | 0.320674 | 5:+34805855 | None:intergenic |
| ATCGGCACTGACTCGAGAAT+TGG | 0.342533 | 5:-34806275 | MsG0580026328.01.T01:CDS |
| GGCTAATATCGTGTTTGTTT+CGG | 0.344439 | 5:-34806792 | MsG0580026328.01.T01:CDS |
| GATGTGTGCAAGGGTTTATT+GGG | 0.345471 | 5:-34805984 | MsG0580026328.01.T01:CDS |
| TTGAATGCTAGTGTTGGTTT+TGG | 0.346083 | 5:-34806242 | MsG0580026328.01.T01:CDS |
| TGAGAGATGTTTATGCTCAT+TGG | 0.363817 | 5:-34806454 | MsG0580026328.01.T01:CDS |
| AAGCTGCTGATCTCACTTAC+TGG | 0.367574 | 5:-34806730 | MsG0580026328.01.T01:CDS |
| TGGCAATGAAGAAATTTGAT+TGG | 0.369498 | 5:-34805899 | MsG0580026328.01.T01:CDS |
| AAAGGAAGTATCTGTTGTTT+GGG | 0.384509 | 5:-34805832 | MsG0580026328.01.T01:CDS |
| CTACTGGAAACAAGTCATTA+AGG | 0.384828 | 5:-34806144 | MsG0580026328.01.T01:CDS |
| TCAAGACCAGGTTCATATAT+AGG | 0.390125 | 5:+34806884 | None:intergenic |
| GGTTCACGAACCGAGACTTC+TGG | 0.394892 | 5:+34806111 | None:intergenic |
| GGCAATGAAGAAATTTGATT+GGG | 0.396985 | 5:-34805898 | MsG0580026328.01.T01:CDS |
| GGACGCATACGAGGCAATAA+AGG | 0.398588 | 5:-34805811 | MsG0580026328.01.T01:CDS |
| GAATCCTTTGCACCAATTTG+TGG | 0.410947 | 5:-34806418 | MsG0580026328.01.T01:CDS |
| GAGAGATGTTTATGCTCATT+GGG | 0.414622 | 5:-34806453 | MsG0580026328.01.T01:CDS |
| TCCCAGGTTTCCCACTCAAT+CGG | 0.430962 | 5:-34806293 | MsG0580026328.01.T01:CDS |
| TTCCCGAGGTGGCTAACTAC+TGG | 0.431786 | 5:-34806160 | MsG0580026328.01.T01:CDS |
| TCAGAAGGATATTCTGAACT+TGG | 0.432669 | 5:-34806207 | MsG0580026328.01.T01:CDS |
| TGAACATTGAAGAAACAATT+CGG | 0.443715 | 5:+34806090 | None:intergenic |
| AAAGCAATCACAGCCATTGT+TGG | 0.448671 | 5:+34806983 | None:intergenic |
| AGAGGATTCTGACTCACAAT+AGG | 0.449092 | 5:-34806613 | MsG0580026328.01.T01:CDS |
| GAGTTCAGCAGACCACAAAT+TGG | 0.459484 | 5:+34806406 | None:intergenic |
| AGCTCCAAGACCCTGAGTCT+TGG | 0.474958 | 5:+34806757 | None:intergenic |
| CCGACCAAGACTCAGGGTCT+TGG | 0.475517 | 5:-34806761 | MsG0580026328.01.T01:CDS |
| TGCCGATTGAGTGGGAAACC+TGG | 0.479500 | 5:+34806291 | None:intergenic |
| TGCATTGGAGCTGGTTATGT+TGG | 0.483431 | 5:-34807010 | MsG0580026328.01.T01:CDS |
| ACACTAGCATTCAAGAACTT+TGG | 0.483639 | 5:+34806251 | None:intergenic |
| CCCGATCGAGTTCTTATTGG+AGG | 0.483911 | 5:-34806515 | MsG0580026328.01.T01:CDS |
| CGTCGAGAAATCGACTGTTC+CGG | 0.485006 | 5:-34806657 | MsG0580026328.01.T01:CDS |
| TTCCAGTAGTTAGCCACCTC+GGG | 0.487113 | 5:+34806158 | None:intergenic |
| AAGACTCAGGGTCTTGGAGC+TGG | 0.487982 | 5:-34806755 | MsG0580026328.01.T01:CDS |
| AACCGGTGCTGATGTTTCCC+AGG | 0.495347 | 5:-34806309 | MsG0580026328.01.T01:CDS |
| CTTCCATCAAAGATAAATGC+AGG | 0.495837 | 5:+34805705 | None:intergenic |
| TTTCTCCTTTAAGCCACTGC+AGG | 0.496177 | 5:+34805594 | None:intergenic |
| ATGGTGAAGATTTGTTGCAT+TGG | 0.496859 | 5:-34807025 | MsG0580026328.01.T01:CDS |
| CTGCATTTATCTTTGATGGA+AGG | 0.497680 | 5:-34805704 | MsG0580026328.01.T01:CDS |
| AGAAGGACACCGGTGACACT+AGG | 0.499347 | 5:-34806022 | MsG0580026328.01.T01:CDS |
| ATTGGAGCTGGTTATGTTGG+TGG | 0.506973 | 5:-34807007 | MsG0580026328.01.T01:CDS |
| CTGTTCCAAGCATTGATTCG+AGG | 0.508928 | 5:+34806917 | None:intergenic |
| CCCTTGCACACATCGATCGC+AGG | 0.514824 | 5:+34805993 | None:intergenic |
| TCCTGCGATCGATGTGTGCA+AGG | 0.515154 | 5:-34805994 | MsG0580026328.01.T01:CDS |
| TTCTGACTCACAATAGGAAA+GGG | 0.516061 | 5:-34806607 | MsG0580026328.01.T01:CDS |
| AAGATTTGTTGCATTGGAGC+TGG | 0.518275 | 5:-34807019 | MsG0580026328.01.T01:CDS |
| GAACACTCCGACCAAGACTC+AGG | 0.523961 | 5:-34806768 | MsG0580026328.01.T01:CDS |
| CTTGTTGGTTGAAGATGAGC+AGG | 0.526816 | 5:+34805870 | None:intergenic |
| TTGGAAAACCACTAGATGCT+TGG | 0.534305 | 5:-34805629 | MsG0580026328.01.T01:CDS |
| TCGAGTTCTTATTGGAGGTA+GGG | 0.535042 | 5:-34806510 | MsG0580026328.01.T01:CDS |
| CCTCCAATAAGAACTCGATC+GGG | 0.536505 | 5:+34806515 | None:intergenic |
| GTACCCTCAGCAAGAAACTC+GGG | 0.540101 | 5:+34806560 | None:intergenic |
| CATAAACATCTCTCAAAGCA+TGG | 0.540690 | 5:+34806462 | None:intergenic |
| AGCTGCTGATCTCACTTACT+GGG | 0.540823 | 5:-34806729 | MsG0580026328.01.T01:CDS |
| AGGAGTCTCCCTAGTGTCAC+CGG | 0.541541 | 5:+34806013 | None:intergenic |
| TCAGCGCTATGTGAGGCAAC+CGG | 0.542235 | 5:-34806326 | MsG0580026328.01.T01:CDS |
| TTTGGGATTTGCTTTCAAGA+AGG | 0.543163 | 5:-34806039 | MsG0580026328.01.T01:CDS |
| GTCTATATCTGCGAATGCAA+CGG | 0.543167 | 5:-34806185 | MsG0580026328.01.T01:CDS |
| CAAGGGTTTATTGGGAGACA+AGG | 0.544522 | 5:-34805976 | MsG0580026328.01.T01:CDS |
| CCACGCCTCGAATCAATGCT+TGG | 0.546158 | 5:-34806922 | MsG0580026328.01.T01:CDS |
| ACCTCCAATAAGAACTCGAT+CGG | 0.548948 | 5:+34806514 | None:intergenic |
| CCAAGCATTGATTCGAGGCG+TGG | 0.550506 | 5:+34806922 | None:intergenic |
| ACAACAGCTACCTCAATCTC+AGG | 0.551013 | 5:+34806953 | None:intergenic |
| GCTCAAGGACATGCCTGCAG+TGG | 0.552929 | 5:-34805607 | MsG0580026328.01.T01:CDS |
| TGTACCCTCAGCAAGAAACT+CGG | 0.553638 | 5:+34806559 | None:intergenic |
| TTTGAAGTGTCCTGAGATTG+AGG | 0.556278 | 5:-34806963 | MsG0580026328.01.T01:CDS |
| TAACCCCGAGTTTCTTGCTG+AGG | 0.556852 | 5:-34806564 | MsG0580026328.01.T01:CDS |
| CACTTGCCTATATATGAACC+TGG | 0.557221 | 5:-34806890 | MsG0580026328.01.T01:CDS |
| TCGAGTCAGTGCCGATTGAG+TGG | 0.557734 | 5:+34806282 | None:intergenic |
| ATTTGCTCTTCAGAAACTTG+AGG | 0.557922 | 5:+34805933 | None:intergenic |
| TTTCCAGTAGTTAGCCACCT+CGG | 0.559583 | 5:+34806157 | None:intergenic |
| GCCGATTGAGTGGGAAACCT+GGG | 0.564707 | 5:+34806292 | None:intergenic |
| CCAATGCTTTCTTGGCGCAG+AGG | 0.566090 | 5:-34806370 | MsG0580026328.01.T01:CDS |
| TGAGATTGAGGTAGCTGTTG+TGG | 0.568941 | 5:-34806951 | MsG0580026328.01.T01:CDS |
| ACCACTAGATGCTTGGCTCA+AGG | 0.570908 | 5:-34805622 | MsG0580026328.01.T01:CDS |
| TGCCTCACATAGCGCTGACA+TGG | 0.578504 | 5:+34806331 | None:intergenic |
| TTATGCTCATTGGGTGCCGA+TGG | 0.583716 | 5:-34806444 | MsG0580026328.01.T01:CDS |
| ATTCTGACTCACAATAGGAA+AGG | 0.584949 | 5:-34806608 | MsG0580026328.01.T01:CDS |
| CCAAGACCCTGAGTCTTGGT+CGG | 0.585143 | 5:+34806761 | None:intergenic |
| AAGTTCTTGAATGCTAGTGT+TGG | 0.586499 | 5:-34806248 | MsG0580026328.01.T01:CDS |
| CAGACCACAAATTGGTGCAA+AGG | 0.594191 | 5:+34806414 | None:intergenic |
| TCCTTGAGCCAAGCATCTAG+TGG | 0.594218 | 5:+34805621 | None:intergenic |
| GTGCAAAGGATTCGATCCAT+CGG | 0.600397 | 5:+34806428 | None:intergenic |
| CGAGTCAGTGCCGATTGAGT+GGG | 0.601410 | 5:+34806283 | None:intergenic |
| CCTGCGATCGATGTGTGCAA+GGG | 0.602065 | 5:-34805993 | MsG0580026328.01.T01:CDS |
| CGAATGCAACGGCCTTCCCG+AGG | 0.603356 | 5:-34806174 | MsG0580026328.01.T01:CDS |
| GAAGGACACCGGTGACACTA+GGG | 0.604239 | 5:-34806021 | MsG0580026328.01.T01:CDS |
| GTTCTTGAACTCGTCCCACT+CGG | 0.605635 | 5:+34805764 | None:intergenic |
| AACCCCGAGTTTCTTGCTGA+GGG | 0.606199 | 5:-34806563 | MsG0580026328.01.T01:CDS |
| AACCTGGGAAACATCAGCAC+CGG | 0.606509 | 5:+34806307 | None:intergenic |
| TGAACGACTACCAGAAGTCT+CGG | 0.607268 | 5:-34806121 | MsG0580026328.01.T01:CDS |
| ATCGAGTTCTTATTGGAGGT+AGG | 0.616375 | 5:-34806511 | MsG0580026328.01.T01:CDS |
| ATGCAACGGCCTTCCCGAGG+TGG | 0.616656 | 5:-34806171 | MsG0580026328.01.T01:CDS |
| AACACTCCGACCAAGACTCA+GGG | 0.616845 | 5:-34806767 | MsG0580026328.01.T01:CDS |
| AGTAGTTAGCCACCTCGGGA+AGG | 0.619843 | 5:+34806162 | None:intergenic |
| TGCCATGTCAGCGCTATGTG+AGG | 0.623041 | 5:-34806333 | MsG0580026328.01.T01:CDS |
| TTCACCACATCATCAAGACC+AGG | 0.624783 | 5:+34806872 | None:intergenic |
| TTTGCTTTCAAGAAGGACAC+CGG | 0.626406 | 5:-34806032 | MsG0580026328.01.T01:CDS |
| TGTTGTTTGGGACGCATACG+AGG | 0.628603 | 5:-34805820 | MsG0580026328.01.T01:CDS |
| TGAACCTGGTCTTGATGATG+TGG | 0.631338 | 5:-34806876 | MsG0580026328.01.T01:CDS |
| CGCTGACATGGCATTTACAG+AGG | 0.633055 | 5:+34806343 | None:intergenic |
| TTATGTTGGTGGTCCAACAA+TGG | 0.633393 | 5:-34806996 | MsG0580026328.01.T01:CDS |
| CAGGTTCATATATAGGCAAG+TGG | 0.651497 | 5:+34806891 | None:intergenic |
| GGAGGTAGGGAAACCCCTGA+AGG | 0.654033 | 5:-34806497 | MsG0580026328.01.T01:CDS |
| CCTCTGCGCCAAGAAAGCAT+TGG | 0.658227 | 5:+34806370 | None:intergenic |
| CGTTGAGAAACATGTTGCTG+AGG | 0.659064 | 5:-34806813 | MsG0580026328.01.T01:CDS |
| AAACTGCTGAGGCGATCGAG+AGG | 0.670216 | 5:-34806631 | MsG0580026328.01.T01:CDS |
| GTATCTGCATTCTGACCGAG+TGG | 0.674975 | 5:-34805779 | MsG0580026328.01.T01:CDS |
| TACCCTCAGCAAGAAACTCG+GGG | 0.688280 | 5:+34806561 | None:intergenic |
| TGTTCCGGTTAAAACTGCTG+AGG | 0.695095 | 5:-34806642 | MsG0580026328.01.T01:CDS |
| TATCTGCATTCTGACCGAGT+GGG | 0.696328 | 5:-34805778 | MsG0580026328.01.T01:CDS |
| GATGTGGTGAAGAAGTGCAG+AGG | 0.717969 | 5:-34806860 | MsG0580026328.01.T01:CDS |
| GAGGCAATAAAGGATTCACA+TGG | 0.734215 | 5:-34805801 | MsG0580026328.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGAACATTGAAGAAACAATT+CGG | + | Chr5:34806540-34806559 | None:intergenic | 25.0% |
| !!! | CAAAAACTTTTTGGTAATCA+AGG | + | Chr5:34806888-34806907 | None:intergenic | 25.0% |
| AGAGCAAATCTTAAAGGATT+TGG | - | Chr5:34806708-34806727 | MsG0580026328.01.T01:CDS | 30.0% | |
| GGCAATGAAGAAATTTGATT+GGG | - | Chr5:34806729-34806748 | MsG0580026328.01.T01:CDS | 30.0% | |
| TGGCAATGAAGAAATTTGAT+TGG | - | Chr5:34806728-34806747 | MsG0580026328.01.T01:CDS | 30.0% | |
| ! | GCATGTTGTCAAAAACTTTT+TGG | + | Chr5:34806897-34806916 | None:intergenic | 30.0% |
| ! | TTCTGAAGAGCAAATCTTAA+AGG | - | Chr5:34806702-34806721 | MsG0580026328.01.T01:CDS | 30.0% |
| !! | AAAAGGAAGTATCTGTTGTT+TGG | - | Chr5:34806794-34806813 | MsG0580026328.01.T01:CDS | 30.0% |
| !! | AAAGGAAGTATCTGTTGTTT+GGG | - | Chr5:34806795-34806814 | MsG0580026328.01.T01:CDS | 30.0% |
| !! | GGTTTTATCGTATATTCCAT+TGG | - | Chr5:34806979-34806998 | MsG0580026328.01.T01:CDS | 30.0% |
| AAGCCTGCATTTATCTTTGA+TGG | - | Chr5:34806919-34806938 | MsG0580026328.01.T01:CDS | 35.0% | |
| AAGTCCAACAACTTCGAAAA+AGG | - | Chr5:34806777-34806796 | MsG0580026328.01.T01:CDS | 35.0% | |
| AAGTTCTTGAATGCTAGTGT+TGG | - | Chr5:34806379-34806398 | MsG0580026328.01.T01:CDS | 35.0% | |
| ACACTAGCATTCAAGAACTT+TGG | + | Chr5:34806379-34806398 | None:intergenic | 35.0% | |
| ATTCTGACTCACAATAGGAA+AGG | - | Chr5:34806019-34806038 | MsG0580026328.01.T01:CDS | 35.0% | |
| ATTTGCTCTTCAGAAACTTG+AGG | + | Chr5:34806697-34806716 | None:intergenic | 35.0% | |
| CATAAACATCTCTCAAAGCA+TGG | + | Chr5:34806168-34806187 | None:intergenic | 35.0% | |
| CTACTGGAAACAAGTCATTA+AGG | - | Chr5:34806483-34806502 | MsG0580026328.01.T01:CDS | 35.0% | |
| CTGCATTTATCTTTGATGGA+AGG | - | Chr5:34806923-34806942 | MsG0580026328.01.T01:CDS | 35.0% | |
| CTTCCATCAAAGATAAATGC+AGG | + | Chr5:34806925-34806944 | None:intergenic | 35.0% | |
| GAGAGATGTTTATGCTCATT+GGG | - | Chr5:34806174-34806193 | MsG0580026328.01.T01:CDS | 35.0% | |
| GGCTAATATCGTGTTTGTTT+CGG | - | Chr5:34805835-34805854 | MsG0580026328.01.T01:CDS | 35.0% | |
| GTTAAAAAGCTGAGGGAAAT+CGG | - | Chr5:34806958-34806977 | MsG0580026328.01.T01:CDS | 35.0% | |
| TCAAGACCAGGTTCATATAT+AGG | + | Chr5:34805746-34805765 | None:intergenic | 35.0% | |
| TCAGAAGGATATTCTGAACT+TGG | - | Chr5:34806420-34806439 | MsG0580026328.01.T01:CDS | 35.0% | |
| TGAGAGATGTTTATGCTCAT+TGG | - | Chr5:34806173-34806192 | MsG0580026328.01.T01:CDS | 35.0% | |
| TGTCGATGTTAAAAAGCTGA+GGG | - | Chr5:34806951-34806970 | MsG0580026328.01.T01:CDS | 35.0% | |
| TTCTGACTCACAATAGGAAA+GGG | - | Chr5:34806020-34806039 | MsG0580026328.01.T01:CDS | 35.0% | |
| TTGTCGATGTTAAAAAGCTG+AGG | - | Chr5:34806950-34806969 | MsG0580026328.01.T01:CDS | 35.0% | |
| ! | AGGAAAAAAGATCGCTGTTT+TGG | - | Chr5:34806570-34806589 | MsG0580026328.01.T01:CDS | 35.0% |
| ! | TTTGGGATTTGCTTTCAAGA+AGG | - | Chr5:34806588-34806607 | MsG0580026328.01.T01:CDS | 35.0% |
| !! | ATGGTGAAGATTTGTTGCAT+TGG | - | Chr5:34805602-34805621 | MsG0580026328.01.T01:CDS | 35.0% |
| !! | GGAAAAAAGATCGCTGTTTT+GGG | - | Chr5:34806571-34806590 | MsG0580026328.01.T01:CDS | 35.0% |
| !!! | ACTTCCTTTTTCGAAGTTGT+TGG | + | Chr5:34806784-34806803 | None:intergenic | 35.0% |
| !!! | AGCGATCTTTTTTCCTGAAA+CGG | + | Chr5:34806566-34806585 | None:intergenic | 35.0% |
| !!! | TTGAATGCTAGTGTTGGTTT+TGG | - | Chr5:34806385-34806404 | MsG0580026328.01.T01:CDS | 35.0% |
| AAAGCAATCACAGCCATTGT+TGG | + | Chr5:34805647-34805666 | None:intergenic | 40.0% | |
| AATCCCGATCGAGTTCTTAT+TGG | - | Chr5:34806109-34806128 | MsG0580026328.01.T01:CDS | 40.0% | |
| ACCTCCAATAAGAACTCGAT+CGG | + | Chr5:34806116-34806135 | None:intergenic | 40.0% | |
| AGAGGATTCTGACTCACAAT+AGG | - | Chr5:34806014-34806033 | MsG0580026328.01.T01:CDS | 40.0% | |
| ATCGAGTTCTTATTGGAGGT+AGG | - | Chr5:34806116-34806135 | MsG0580026328.01.T01:CDS | 40.0% | |
| CACTTGCCTATATATGAACC+TGG | - | Chr5:34805737-34805756 | MsG0580026328.01.T01:CDS | 40.0% | |
| CAGGTTCATATATAGGCAAG+TGG | + | Chr5:34805739-34805758 | None:intergenic | 40.0% | |
| GAATCCTTTGCACCAATTTG+TGG | - | Chr5:34806209-34806228 | MsG0580026328.01.T01:CDS | 40.0% | |
| GAGGCAATAAAGGATTCACA+TGG | - | Chr5:34806826-34806845 | MsG0580026328.01.T01:CDS | 40.0% | |
| GATGTGTGCAAGGGTTTATT+GGG | - | Chr5:34806643-34806662 | MsG0580026328.01.T01:CDS | 40.0% | |
| GTCTATATCTGCGAATGCAA+CGG | - | Chr5:34806442-34806461 | MsG0580026328.01.T01:CDS | 40.0% | |
| TCAATGTTCAACACCGTTTC+AGG | - | Chr5:34806550-34806569 | MsG0580026328.01.T01:CDS | 40.0% | |
| TCGAGTTCTTATTGGAGGTA+GGG | - | Chr5:34806117-34806136 | MsG0580026328.01.T01:CDS | 40.0% | |
| TTCGAAGTTGTTGGACTTGT+TGG | + | Chr5:34806775-34806794 | None:intergenic | 40.0% | |
| TTGGAAAACCACTAGATGCT+TGG | - | Chr5:34806998-34807017 | MsG0580026328.01.T01:CDS | 40.0% | |
| TTTGCTTTCAAGAAGGACAC+CGG | - | Chr5:34806595-34806614 | MsG0580026328.01.T01:CDS | 40.0% | |
| ! | AGCATCTAGTGGTTTTCCAA+TGG | + | Chr5:34806998-34807017 | None:intergenic | 40.0% |
| ! | TTTGAAGTGTCCTGAGATTG+AGG | - | Chr5:34805664-34805683 | MsG0580026328.01.T01:CDS | 40.0% |
| !! | AAGATTTGTTGCATTGGAGC+TGG | - | Chr5:34805608-34805627 | MsG0580026328.01.T01:CDS | 40.0% |
| !! | TTATGTTGGTGGTCCAACAA+TGG | - | Chr5:34805631-34805650 | MsG0580026328.01.T01:CDS | 40.0% |
| !!! | AATGCTAGTGTTGGTTTTGG+TGG | - | Chr5:34806388-34806407 | MsG0580026328.01.T01:CDS | 40.0% |
| !!! | TGGTGGATCTTGTTTTCAGA+AGG | - | Chr5:34806405-34806424 | MsG0580026328.01.T01:CDS | 40.0% |
| AAGCTGCTGATCTCACTTAC+TGG | - | Chr5:34805897-34805916 | MsG0580026328.01.T01:CDS | 45.0% | |
| ACAACAGCTACCTCAATCTC+AGG | + | Chr5:34805677-34805696 | None:intergenic | 45.0% | |
| AGCTGCTGATCTCACTTACT+GGG | - | Chr5:34805898-34805917 | MsG0580026328.01.T01:CDS | 45.0% | |
| ATTGGAGCTGGTTATGTTGG+TGG | - | Chr5:34805620-34805639 | MsG0580026328.01.T01:CDS | 45.0% | |
| CAAGGGTTTATTGGGAGACA+AGG | - | Chr5:34806651-34806670 | MsG0580026328.01.T01:CDS | 45.0% | |
| CAGACCACAAATTGGTGCAA+AGG | + | Chr5:34806216-34806235 | None:intergenic | 45.0% | |
| CCTCCAATAAGAACTCGATC+GGG | + | Chr5:34806115-34806134 | None:intergenic | 45.0% | |
| CGATGTGTGCAAGGGTTTAT+TGG | - | Chr5:34806642-34806661 | MsG0580026328.01.T01:CDS | 45.0% | |
| CGTTGAGAAACATGTTGCTG+AGG | - | Chr5:34805814-34805833 | MsG0580026328.01.T01:CDS | 45.0% | |
| GAGTTCAGCAGACCACAAAT+TGG | + | Chr5:34806224-34806243 | None:intergenic | 45.0% | |
| GTGCAAAGGATTCGATCCAT+CGG | + | Chr5:34806202-34806221 | None:intergenic | 45.0% | |
| TATCTGCATTCTGACCGAGT+GGG | - | Chr5:34806849-34806868 | MsG0580026328.01.T01:CDS | 45.0% | |
| TGAACGACTACCAGAAGTCT+CGG | - | Chr5:34806506-34806525 | MsG0580026328.01.T01:CDS | 45.0% | |
| TGAGATTGAGGTAGCTGTTG+TGG | - | Chr5:34805676-34805695 | MsG0580026328.01.T01:CDS | 45.0% | |
| TGCATTGGAGCTGGTTATGT+TGG | - | Chr5:34805617-34805636 | MsG0580026328.01.T01:CDS | 45.0% | |
| TGTACCCTCAGCAAGAAACT+CGG | + | Chr5:34806071-34806090 | None:intergenic | 45.0% | |
| TGTTCCGGTTAAAACTGCTG+AGG | - | Chr5:34805985-34806004 | MsG0580026328.01.T01:CDS | 45.0% | |
| TTCACCACATCATCAAGACC+AGG | + | Chr5:34805758-34805777 | None:intergenic | 45.0% | |
| TTTCCAGTAGTTAGCCACCT+CGG | + | Chr5:34806473-34806492 | None:intergenic | 45.0% | |
| ! | CTTGTTGGTTGAAGATGAGC+AGG | + | Chr5:34806760-34806779 | None:intergenic | 45.0% |
| !! | ATCGCCTCAGCAGTTTTAAC+CGG | + | Chr5:34805992-34806011 | None:intergenic | 45.0% |
| !! | CTGTTCCAAGCATTGATTCG+AGG | + | Chr5:34805713-34805732 | None:intergenic | 45.0% |
| !! | TGAACCTGGTCTTGATGATG+TGG | - | Chr5:34805751-34805770 | MsG0580026328.01.T01:CDS | 45.0% |
| !!! | GATCGCTTTTTGACCTTCAG+GGG | + | Chr5:34806146-34806165 | None:intergenic | 45.0% |
| !!! | GGATCGCTTTTTGACCTTCA+GGG | + | Chr5:34806147-34806166 | None:intergenic | 45.0% |
| !!! | TGGATCGCTTTTTGACCTTC+AGG | + | Chr5:34806148-34806167 | None:intergenic | 45.0% |
| AACACTCCGACCAAGACTCA+GGG | - | Chr5:34805860-34805879 | MsG0580026328.01.T01:CDS | 50.0% | |
| AACCCCGAGTTTCTTGCTGA+GGG | - | Chr5:34806064-34806083 | MsG0580026328.01.T01:CDS | 50.0% | |
| AACCTGGGAAACATCAGCAC+CGG | + | Chr5:34806323-34806342 | None:intergenic | 50.0% | |
| ACCACTAGATGCTTGGCTCA+AGG | - | Chr5:34807005-34807024 | MsG0580026328.01.T01:CDS | 50.0% | |
| CCCGATCGAGTTCTTATTGG+AGG | - | Chr5:34806112-34806131 | MsG0580026328.01.T01:CDS | 50.0% | |
| CGCTGACATGGCATTTACAG+AGG | + | Chr5:34806287-34806306 | None:intergenic | 50.0% | |
| CGTCGAGAAATCGACTGTTC+CGG | - | Chr5:34805970-34805989 | MsG0580026328.01.T01:CDS | 50.0% | |
| GGACGCATACGAGGCAATAA+AGG | - | Chr5:34806816-34806835 | MsG0580026328.01.T01:CDS | 50.0% | |
| GTACCCTCAGCAAGAAACTC+GGG | + | Chr5:34806070-34806089 | None:intergenic | 50.0% | |
| GTATCTGCATTCTGACCGAG+TGG | - | Chr5:34806848-34806867 | MsG0580026328.01.T01:CDS | 50.0% | |
| GTTCTTGAACTCGTCCCACT+CGG | + | Chr5:34806866-34806885 | None:intergenic | 50.0% | |
| TAACCCCGAGTTTCTTGCTG+AGG | - | Chr5:34806063-34806082 | MsG0580026328.01.T01:CDS | 50.0% | |
| TACCCTCAGCAAGAAACTCG+GGG | + | Chr5:34806069-34806088 | None:intergenic | 50.0% | |
| TCCCAGGTTTCCCACTCAAT+CGG | - | Chr5:34806334-34806353 | MsG0580026328.01.T01:CDS | 50.0% | |
| TCCTTGAGCCAAGCATCTAG+TGG | + | Chr5:34807009-34807028 | None:intergenic | 50.0% | |
| TTCCAGTAGTTAGCCACCTC+GGG | + | Chr5:34806472-34806491 | None:intergenic | 50.0% | |
| ! | GATGTGGTGAAGAAGTGCAG+AGG | - | Chr5:34805767-34805786 | MsG0580026328.01.T01:CDS | 50.0% |
| ! | GCTTGCTGCCAATGCTTTCT+TGG | - | Chr5:34806249-34806268 | MsG0580026328.01.T01:CDS | 50.0% |
| ! | TGTTGTTTGGGACGCATACG+AGG | - | Chr5:34806807-34806826 | MsG0580026328.01.T01:CDS | 50.0% |
| !! | ATCGGCACTGACTCGAGAAT+TGG | - | Chr5:34806352-34806371 | MsG0580026328.01.T01:CDS | 50.0% |
| !! | TTATGCTCATTGGGTGCCGA+TGG | - | Chr5:34806183-34806202 | MsG0580026328.01.T01:CDS | 50.0% |
| AAACTGCTGAGGCGATCGAG+AGG | - | Chr5:34805996-34806015 | MsG0580026328.01.T01:CDS | 55.0% | |
| AAGACTCAGGGTCTTGGAGC+TGG | - | Chr5:34805872-34805891 | MsG0580026328.01.T01:CDS | 55.0% | |
| AGAAGGACACCGGTGACACT+AGG | - | Chr5:34806605-34806624 | MsG0580026328.01.T01:CDS | 55.0% | |
| AGCTCCAAGACCCTGAGTCT+TGG | + | Chr5:34805873-34805892 | None:intergenic | 55.0% | |
| AGGAGTCTCCCTAGTGTCAC+CGG | + | Chr5:34806617-34806636 | None:intergenic | 55.0% | |
| AGTAGTTAGCCACCTCGGGA+AGG | + | Chr5:34806468-34806487 | None:intergenic | 55.0% | |
| CCAAGACCCTGAGTCTTGGT+CGG | + | Chr5:34805869-34805888 | None:intergenic | 55.0% | |
| CCAATGCTTTCTTGGCGCAG+AGG | - | Chr5:34806257-34806276 | MsG0580026328.01.T01:CDS | 55.0% | |
| CCACGCCTCGAATCAATGCT+TGG | - | Chr5:34805705-34805724 | MsG0580026328.01.T01:CDS | 55.0% | |
| CCTGCGATCGATGTGTGCAA+GGG | - | Chr5:34806634-34806653 | MsG0580026328.01.T01:CDS | 55.0% | |
| GAACACTCCGACCAAGACTC+AGG | - | Chr5:34805859-34805878 | MsG0580026328.01.T01:CDS | 55.0% | |
| GAAGGACACCGGTGACACTA+GGG | - | Chr5:34806606-34806625 | MsG0580026328.01.T01:CDS | 55.0% | |
| GCCGATTGAGTGGGAAACCT+GGG | + | Chr5:34806338-34806357 | None:intergenic | 55.0% | |
| GGTTCACGAACCGAGACTTC+TGG | + | Chr5:34806519-34806538 | None:intergenic | 55.0% | |
| TCAGCGCTATGTGAGGCAAC+CGG | - | Chr5:34806301-34806320 | MsG0580026328.01.T01:CDS | 55.0% | |
| TCCTGCGATCGATGTGTGCA+AGG | - | Chr5:34806633-34806652 | MsG0580026328.01.T01:CDS | 55.0% | |
| TGCCATGTCAGCGCTATGTG+AGG | - | Chr5:34806294-34806313 | MsG0580026328.01.T01:CDS | 55.0% | |
| TTCCCGAGGTGGCTAACTAC+TGG | - | Chr5:34806467-34806486 | MsG0580026328.01.T01:CDS | 55.0% | |
| ! | CCTCTGCGCCAAGAAAGCAT+TGG | + | Chr5:34806260-34806279 | None:intergenic | 55.0% |
| ! | TGCCGATTGAGTGGGAAACC+TGG | + | Chr5:34806339-34806358 | None:intergenic | 55.0% |
| !! | AACCGGTGCTGATGTTTCCC+AGG | - | Chr5:34806318-34806337 | MsG0580026328.01.T01:CDS | 55.0% |
| !! | CCAAGCATTGATTCGAGGCG+TGG | + | Chr5:34805708-34805727 | None:intergenic | 55.0% |
| !! | CGAGTCAGTGCCGATTGAGT+GGG | + | Chr5:34806347-34806366 | None:intergenic | 55.0% |
| !! | TCGAGTCAGTGCCGATTGAG+TGG | + | Chr5:34806348-34806367 | None:intergenic | 55.0% |
| !! | TGCCTCACATAGCGCTGACA+TGG | + | Chr5:34806299-34806318 | None:intergenic | 55.0% |
| CCCTTGCACACATCGATCGC+AGG | + | Chr5:34806637-34806656 | None:intergenic | 60.0% | |
| CCGACCAAGACTCAGGGTCT+TGG | - | Chr5:34805866-34805885 | MsG0580026328.01.T01:CDS | 60.0% | |
| GCTCAAGGACATGCCTGCAG+TGG | - | Chr5:34807020-34807039 | MsG0580026328.01.T01:CDS | 60.0% | |
| GGAGGTAGGGAAACCCCTGA+AGG | - | Chr5:34806130-34806149 | MsG0580026328.01.T01:CDS | 60.0% | |
| ATGCAACGGCCTTCCCGAGG+TGG | - | Chr5:34806456-34806475 | MsG0580026328.01.T01:CDS | 65.0% | |
| CGAATGCAACGGCCTTCCCG+AGG | - | Chr5:34806453-34806472 | MsG0580026328.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 34805602 | 34807047 | 34805602 | ID=MsG0580026328.01;Name=MsG0580026328.01 |
| Chr5 | mRNA | 34805602 | 34807047 | 34805602 | ID=MsG0580026328.01.T01;Parent=MsG0580026328.01;Name=MsG0580026328.01.T01;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|481 |
| Chr5 | exon | 34805602 | 34807047 | 34805602 | ID=MsG0580026328.01.T01:exon:25607;Parent=MsG0580026328.01.T01 |
| Chr5 | CDS | 34805602 | 34807047 | 34805602 | ID=MsG0580026328.01.T01:cds;Parent=MsG0580026328.01.T01 |
| Gene Sequence |
| Protein sequence |
