AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026495.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026495.01.T01 MTR_5g059200 97.857 280 6 0 1 280 1 280 0.0 578
MsG0580026495.01.T01 MTR_8g107140 54.839 217 91 4 35 244 33 249 3.62e-76 235
MsG0580026495.01.T01 MTR_8g036215 52.055 219 98 4 28 239 19 237 1.35e-75 233
MsG0580026495.01.T01 MTR_6g079580 49.372 239 114 4 8 239 1 239 2.18e-74 230
MsG0580026495.01.T01 MTR_1g021945 51.121 223 101 2 27 241 24 246 9.33e-73 226
MsG0580026495.01.T01 MTR_8g075510 49.569 232 109 5 13 239 15 243 2.20e-72 227
MsG0580026495.01.T01 MTR_8g075510 49.569 232 109 5 13 239 15 243 3.50e-72 225
MsG0580026495.01.T01 MTR_8g075550 49.356 233 103 5 27 244 26 258 1.44e-70 223
MsG0580026495.01.T01 MTR_5g022350 48.498 233 111 5 11 239 15 242 4.14e-70 222
MsG0580026495.01.T01 MTR_8g056820 47.881 236 113 5 14 239 11 246 4.19e-70 220
MsG0580026495.01.T01 MTR_4g073720 51.364 220 97 6 27 239 23 239 7.40e-70 222
MsG0580026495.01.T01 MTR_3g111620 50.226 221 102 3 27 239 25 245 1.45e-69 218
MsG0580026495.01.T01 MTR_8g037890 46.694 242 119 5 14 245 11 252 2.50e-69 220
MsG0580026495.01.T01 MTR_3g068015 48.165 218 104 4 31 239 30 247 6.95e-68 214
MsG0580026495.01.T01 MTR_5g022310 46.640 253 118 8 1 239 1 250 2.31e-67 213
MsG0580026495.01.T01 MTR_5g022310 46.640 253 118 8 1 239 1 250 3.52e-67 214
MsG0580026495.01.T01 MTR_1g025420 47.471 257 118 10 4 248 3 254 1.34e-66 211
MsG0580026495.01.T01 MTR_1g025420 48.594 249 111 10 4 240 3 246 4.22e-66 212
MsG0580026495.01.T01 MTR_7g062610 46.544 217 108 3 31 239 25 241 6.26e-66 209
MsG0580026495.01.T01 MTR_6g009480 44.000 250 119 8 4 239 9 251 4.64e-63 202
MsG0580026495.01.T01 MTR_3g114030 48.661 224 103 8 28 239 6 229 2.94e-61 196
MsG0580026495.01.T01 MTR_2g068030 43.404 235 115 6 15 239 17 243 5.06e-61 196
MsG0580026495.01.T01 MTR_1g062590 46.789 218 105 7 32 239 25 241 1.93e-58 189
MsG0580026495.01.T01 MTR_1g062630 47.297 222 106 7 32 243 25 245 2.69e-58 189
MsG0580026495.01.T01 MTR_2g069660 43.373 249 124 8 1 239 1 242 6.10e-58 188
MsG0580026495.01.T01 MTR_4g073730 43.426 251 126 7 1 239 1 247 1.13e-57 189
MsG0580026495.01.T01 MTR_4g073730 43.426 251 126 7 1 239 1 247 2.17e-57 189
MsG0580026495.01.T01 MTR_2g067980 43.496 246 126 7 7 239 1 246 6.17e-57 199
MsG0580026495.01.T01 MTR_2g068655 43.668 229 119 6 27 245 29 257 6.93e-57 187
MsG0580026495.01.T01 MTR_4g063630 44.000 225 112 8 28 239 28 251 1.33e-56 185
MsG0580026495.01.T01 MTR_1g062340 46.789 218 105 7 32 239 25 241 2.62e-56 184
MsG0580026495.01.T01 MTR_8g089020 53.947 152 53 1 80 231 21 155 1.29e-55 179
MsG0580026495.01.T01 MTR_1g062350 45.872 218 107 7 32 239 25 241 2.02e-55 181
MsG0580026495.01.T01 MTR_1g062370 45.413 218 108 7 32 239 25 241 3.04e-55 181
MsG0580026495.01.T01 MTR_1g062660 45.413 218 108 7 32 239 25 241 2.71e-54 179
MsG0580026495.01.T01 MTR_7g102380 41.350 237 128 7 13 239 5 240 2.97e-53 176
MsG0580026495.01.T01 MTR_5g010635 46.083 217 97 7 28 239 23 224 2.27e-52 174
MsG0580026495.01.T01 MTR_8g096900 42.149 242 117 8 3 239 24 247 7.53e-51 170
MsG0580026495.01.T01 MTR_5g010640 41.667 252 117 9 1 239 1 235 1.55e-49 166
MsG0580026495.01.T01 MTR_1g062690 40.845 213 101 5 32 239 25 217 8.02e-46 156
MsG0580026495.01.T01 MTR_2g067990 42.056 214 98 7 31 239 29 221 1.05e-40 152
MsG0580026495.01.T01 MTR_2g067970 40.331 181 98 7 68 239 2 181 7.85e-36 138
MsG0580026495.01.T01 MTR_5g059210 100.000 56 0 0 293 348 1 56 3.60e-32 116
MsG0580026495.01.T01 MTR_5g023850 40.828 169 86 7 31 185 28 196 1.19e-31 119
MsG0580026495.01.T01 MTR_5g022350 44.056 143 74 4 13 151 82 222 3.16e-31 118
MsG0580026495.01.T01 MTR_1g062390 30.769 247 143 9 5 239 7 237 8.09e-30 114
MsG0580026495.01.T01 MTR_2g063150 30.085 236 148 8 7 229 8 239 1.18e-28 112
MsG0580026495.01.T01 MTR_8g096920 44.853 136 62 4 8 139 3 129 7.37e-28 107
MsG0580026495.01.T01 MTR_8g096910 37.853 177 93 5 3 175 1 164 1.01e-26 104
MsG0580026495.01.T01 MTR_7g076360 33.493 209 81 5 25 231 4 156 9.77e-25 99.4
MsG0580026495.01.T01 MTR_8g088960 51.282 78 33 3 120 196 12 85 1.52e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026495.01.T01 AT1G77700 66.791 268 88 1 1 267 33 300 7.13e-134 384
MsG0580026495.01.T01 AT1G77700 67.355 242 79 0 1 242 33 274 5.78e-123 357
MsG0580026495.01.T01 AT1G77700 70.404 223 66 0 20 242 80 302 3.07e-119 348
MsG0580026495.01.T01 AT1G19320 49.580 238 110 3 13 240 10 247 6.36e-78 239
MsG0580026495.01.T01 AT1G75050 48.750 240 116 3 11 243 7 246 7.16e-78 239
MsG0580026495.01.T01 AT1G75030 50.628 239 108 4 13 243 10 246 4.02e-77 237
MsG0580026495.01.T01 AT1G75040 48.971 243 109 4 2 239 6 238 7.36e-76 234
MsG0580026495.01.T01 AT1G18250 52.889 225 99 5 27 244 19 243 2.25e-75 233
MsG0580026495.01.T01 AT1G18250 52.212 226 101 5 26 244 19 244 4.17e-75 232
MsG0580026495.01.T01 AT1G73620 51.556 225 102 4 27 244 40 264 1.05e-72 227
MsG0580026495.01.T01 AT4G38660 44.238 269 135 7 9 268 13 275 1.64e-68 219
MsG0580026495.01.T01 AT5G24620 45.200 250 122 5 11 245 62 311 3.31e-68 222
MsG0580026495.01.T01 AT5G24620 45.200 250 122 5 11 245 7 256 3.37e-68 220
MsG0580026495.01.T01 AT4G38660 46.371 248 121 6 30 268 9 253 5.25e-68 216
MsG0580026495.01.T01 AT5G24620 45.200 250 122 5 11 245 83 332 5.52e-68 222
MsG0580026495.01.T01 AT1G75800 45.660 265 122 9 7 253 1 261 4.05e-66 212
MsG0580026495.01.T01 AT4G24180 47.984 248 107 9 7 239 15 255 4.38e-65 207
MsG0580026495.01.T01 AT4G24180 47.244 254 112 9 7 245 15 261 6.22e-65 208
MsG0580026495.01.T01 AT4G24180 50.667 225 93 8 30 239 29 250 8.35e-65 206
MsG0580026495.01.T01 AT4G24180 49.784 231 98 8 30 245 29 256 1.18e-64 207
MsG0580026495.01.T01 AT2G17860 46.781 233 109 7 27 244 21 253 7.15e-64 204
MsG0580026495.01.T01 AT4G36010 48.908 229 101 7 27 239 21 249 6.07e-63 203
MsG0580026495.01.T01 AT4G36010 48.908 229 101 7 27 239 21 249 6.07e-63 203
MsG0580026495.01.T01 AT1G20030 46.862 239 113 8 28 252 2 240 7.82e-63 202
MsG0580026495.01.T01 AT1G20030 46.862 239 113 8 28 252 19 257 1.08e-62 202
MsG0580026495.01.T01 AT5G02140 40.909 264 140 6 31 285 23 279 1.25e-62 202
MsG0580026495.01.T01 AT5G40020 42.000 250 131 7 1 239 1 247 1.93e-62 200
MsG0580026495.01.T01 AT5G02140 45.249 221 112 4 31 242 23 243 3.35e-62 199
MsG0580026495.01.T01 AT4G38670 46.847 222 105 8 31 239 25 246 2.64e-58 190
MsG0580026495.01.T01 AT4G38670 46.847 222 105 8 31 239 25 246 2.64e-58 190
MsG0580026495.01.T01 AT2G28790 43.443 244 124 10 9 239 31 273 5.59e-58 189
MsG0580026495.01.T01 AT4G38670 46.847 222 105 8 31 239 9 230 5.80e-58 189
MsG0580026495.01.T01 AT2G28790 43.033 244 125 9 9 239 6 248 7.10e-58 188
MsG0580026495.01.T01 AT4G24180 50.239 209 86 8 32 225 36 241 3.09e-57 189
MsG0580026495.01.T01 AT4G24180 50.239 209 86 8 32 225 31 236 3.23e-57 189
MsG0580026495.01.T01 AT4G11650 42.672 232 112 7 27 254 21 235 1.27e-51 172
MsG0580026495.01.T01 AT5G38280 41.631 233 122 8 28 246 24 256 8.49e-51 179
MsG0580026495.01.T01 AT5G38280 41.631 233 122 8 28 246 24 256 1.13e-50 179
MsG0580026495.01.T01 AT4G36000 43.269 208 94 5 101 290 1 202 4.87e-48 161
MsG0580026495.01.T01 AT4G36000 43.269 208 94 5 101 290 1 202 4.87e-48 161
MsG0580026495.01.T01 AT4G18253 38.565 223 128 5 27 243 22 241 5.94e-47 159
MsG0580026495.01.T01 AT1G70250 38.222 225 124 7 28 239 144 366 2.29e-41 154
MsG0580026495.01.T01 AT4G18250 39.496 238 131 8 10 239 39 271 4.26e-41 153
MsG0580026495.01.T01 AT5G24620 48.800 125 57 2 128 245 15 139 1.14e-35 132
MsG0580026495.01.T01 AT1G77710 98.077 52 1 0 297 348 4 55 3.08e-28 105
MsG0580026495.01.T01 AT2G24810 56.410 78 34 0 163 240 116 193 9.60e-24 97.1

Find 93 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAGGATTGTCCTTGTTTA+AGG 0.171240 5:-38517553 None:intergenic
TATTGTTGTAGAGGAAATTT+TGG 0.182203 5:+38517941 MsG0580026495.01.T01:CDS
TAAGTTGGAGTGGCCGAATT+TGG 0.220125 5:+38517591 MsG0580026495.01.T01:CDS
CTTTGGCCAGCTGTGTTTCC+AGG 0.226022 5:+38517503 MsG0580026495.01.T01:CDS
GTTATTGTTGTTGGTGAATA+TGG 0.236838 5:+38521942 MsG0580026495.01.T01:CDS
CTTTGGGACAAGTTAATCTT+AGG 0.252225 5:-38517847 None:intergenic
AGACTTAACGGAAAGTTCTT+TGG 0.271584 5:-38517864 None:intergenic
GGCATTGTCCGTCTCCATTT+TGG 0.275296 5:-38517637 None:intergenic
GGCCGAATTTGGGCTCGATC+TGG 0.299439 5:+38517602 MsG0580026495.01.T01:CDS
AAAGTTGGTTTACAAGTAGA+AGG 0.301412 5:-38517968 None:intergenic
TACACTTTGAAGGGTAGTTT+TGG 0.310646 5:-38522012 None:intergenic
AATTTGAGAACGGCGGTAAA+AGG 0.323335 5:-38522154 None:intergenic
ATTCGGCCACTCCAACTTAC+TGG 0.329779 5:-38517587 None:intergenic
GTTTATCGGCTTAACAGAAA+TGG 0.331307 5:-38517786 None:intergenic
CTCCTTGCAATAGTTTACTA+TGG 0.349337 5:-38517477 None:intergenic
GGGTGCAACTTTGACCAAAA+TGG 0.350387 5:+38517623 MsG0580026495.01.T01:CDS
ACTATTGCAAGGAGACTCTT+TGG 0.364386 5:+38517486 MsG0580026495.01.T01:CDS
GACTTAACGGAAAGTTCTTT+GGG 0.366979 5:-38517863 None:intergenic
GCGGTAAAAGGTGCAGCTTC+AGG 0.369201 5:-38522142 None:intergenic
AAGTTGGAGTGGCCGAATTT+GGG 0.393680 5:+38517592 MsG0580026495.01.T01:CDS
GGTCTTTCCGTTAGACTTAA+CGG 0.394785 5:-38517876 None:intergenic
CAGGCTAACATCGTAGAAAT+CGG 0.404148 5:-38517744 None:intergenic
ACCCAGATCGAGCCCAAATT+CGG 0.404436 5:-38517604 None:intergenic
CACAAACCTGTCAGCACAAA+AGG 0.406335 5:-38518092 None:intergenic
AGCGTTCGAGTTATTGTTGT+TGG 0.413130 5:+38521933 MsG0580026495.01.T01:CDS
TACAATGAAGTTTGTGATCA+TGG 0.414865 5:-38518265 None:intergenic
GTGAATTCAGCGAGCGATGC+TGG 0.422358 5:-38517710 None:intergenic
ATTTCTGTTAAGCCGATAAA+CGG 0.435167 5:+38517788 MsG0580026495.01.T01:CDS
GATGATAACATACACTTTGA+AGG 0.440484 5:-38522022 None:intergenic
CAAGGCTTAAGGTCGTTGAT+TGG 0.442016 5:+38518296 MsG0580026495.01.T01:CDS
GCCGAATTTGGGCTCGATCT+GGG 0.445449 5:+38517603 MsG0580026495.01.T01:CDS
ATTGCAAGAACCAATGAGAT+AGG 0.449008 5:-38517330 None:intergenic
GGCAACAACGTAATCCGTTC+CGG 0.459270 5:-38518071 None:intergenic
AAAGGAAATTGCTCAACTGC+TGG 0.462531 5:+38517812 MsG0580026495.01.T01:CDS
TTTATCGGCTTAACAGAAAT+GGG 0.466301 5:-38517785 None:intergenic
TTTGGCCAGCTGTGTTTCCA+GGG 0.472817 5:+38517504 MsG0580026495.01.T01:CDS
TAAGCATAACTATAAGAAGT+TGG 0.500482 5:-38518019 None:intergenic
TAAAGTGGTGCCGCATGCAC+CGG 0.500741 5:-38517663 None:intergenic
GGAGACGGACAATGCCAAAC+CGG 0.501682 5:+38517644 MsG0580026495.01.T01:CDS
GTGAATATGGCGAACGGTGG+TGG 0.502415 5:+38521955 MsG0580026495.01.T01:CDS
GTAGTGGATCACAAGGCTTA+AGG 0.505982 5:+38518285 MsG0580026495.01.T01:CDS
ACTTTAAAATGTGGAGGGGC+AGG 0.509757 5:+38517680 MsG0580026495.01.T01:CDS
TGGTGCCGCATGCACCGGTT+TGG 0.510778 5:-38517658 None:intergenic
GTTAAGCCGATAAACGGAAA+AGG 0.526454 5:+38517794 MsG0580026495.01.T01:CDS
GAACTTTCCGTTAAGTCTAA+CGG 0.532105 5:+38517869 MsG0580026495.01.T01:CDS
ACCATTGGTGATAATAGCGC+TGG 0.536907 5:-38522209 None:intergenic
GTGCATGTGAAAATACTTGT+TGG 0.541354 5:-38518049 None:intergenic
GGGGAACATTTCAACGGCGG+AGG 0.542017 5:+38517524 MsG0580026495.01.T01:CDS
TAAGGTCGTTGATTGGAAGC+TGG 0.542809 5:+38518303 MsG0580026495.01.T01:CDS
CCGCCGTTGAAATGTTCCCC+TGG 0.544537 5:-38517521 None:intergenic
TGTTCACCGCTCCAGTAAGT+TGG 0.544607 5:+38517576 MsG0580026495.01.T01:CDS
AGGCTAACATCGTAGAAATC+GGG 0.545180 5:-38517743 None:intergenic
AAGTTGGTTTACAAGTAGAA+GGG 0.546520 5:-38517967 None:intergenic
TGTTCCCCTGGAAACACAGC+TGG 0.551986 5:-38517509 None:intergenic
TTCAGCTGCAAATTTGAGAA+CGG 0.553407 5:-38522164 None:intergenic
TACGATGTTAGCCTGGTCGA+TGG 0.555169 5:+38517752 MsG0580026495.01.T01:CDS
AGTCTAACGGAAAGACCGTT+GGG 0.555398 5:+38517882 MsG0580026495.01.T01:CDS
CTTCATTGTAGTGGATCACA+AGG 0.557221 5:+38518278 MsG0580026495.01.T01:CDS
TATGGCGAACGGTGGTGGAA+AGG 0.557539 5:+38521960 MsG0580026495.01.T01:CDS
CGATTTCTACGATGTTAGCC+TGG 0.559082 5:+38517745 MsG0580026495.01.T01:CDS
CAATGCCAAACCGGTGCATG+CGG 0.560695 5:+38517653 MsG0580026495.01.T01:CDS
TTGGCCAGCTGTGTTTCCAG+GGG 0.561804 5:+38517505 MsG0580026495.01.T01:CDS
ACTGATGAGTATTGTTGTAG+AGG 0.564854 5:+38517932 MsG0580026495.01.T01:CDS
ATGATAACATACACTTTGAA+GGG 0.567818 5:-38522021 None:intergenic
GCACATTGAAGCCATCGACC+AGG 0.570162 5:-38517763 None:intergenic
TGTGACTGCTATGATTGATA+AGG 0.574826 5:-38517234 None:intergenic
GGCACCACTTTAAAATGTGG+AGG 0.577332 5:+38517674 MsG0580026495.01.T01:CDS
GCACCACTTTAAAATGTGGA+GGG 0.583949 5:+38517675 MsG0580026495.01.T01:CDS
GATGATTCAGAAATTACCAT+TGG 0.584271 5:-38522224 None:intergenic
CACCATAGTAAACTATTGCA+AGG 0.587972 5:+38517475 MsG0580026495.01.T01:CDS
GGTCGTTGATTGGAAGCTGG+TGG 0.589964 5:+38518306 MsG0580026495.01.T01:CDS
GATCACAAACTTCATTGTAG+TGG 0.593624 5:+38518269 MsG0580026495.01.T01:CDS
TTTCCAGGGGAACATTTCAA+CGG 0.596071 5:+38517518 MsG0580026495.01.T01:CDS
AAGTCTAACGGAAAGACCGT+TGG 0.602579 5:+38517881 MsG0580026495.01.T01:CDS
ACCGCTCCAGTAAGTTGGAG+TGG 0.605036 5:+38517581 MsG0580026495.01.T01:CDS
GTGATAATAGCGCTGGTCTG+TGG 0.608795 5:-38522202 None:intergenic
TGCGGCACCACTTTAAAATG+TGG 0.609719 5:+38517671 MsG0580026495.01.T01:CDS
CACCACTTTAAAATGTGGAG+GGG 0.610296 5:+38517676 MsG0580026495.01.T01:CDS
GGAGGATTCGTCCTTAAACA+AGG 0.613851 5:+38517542 MsG0580026495.01.T01:CDS
AACTTTGACCAAAATGGAGA+CGG 0.614713 5:+38517629 MsG0580026495.01.T01:CDS
ATAATAGCGCTGGTCTGTGG+AGG 0.623678 5:-38522199 None:intergenic
AGCTGCAAATTTGAGAACGG+CGG 0.628075 5:-38522161 None:intergenic
ACCAGCGCTATTATCACCAA+TGG 0.630880 5:+38522208 MsG0580026495.01.T01:CDS
ACTTACTGGAGCGGTGAACA+CGG 0.633829 5:-38517573 None:intergenic
ACAAGCACTTCGACACCCAA+CGG 0.634259 5:-38517897 None:intergenic
TTATTCAAAGAAGTTTAAGG+AGG 0.640012 5:+38517991 MsG0580026495.01.T01:CDS
CTGGTGGATAGCAATGATGA+TGG 0.640894 5:+38518322 MsG0580026495.01.T01:CDS
GCCACTCCAACTTACTGGAG+CGG 0.645829 5:-38517582 None:intergenic
AAAATCATAGCAGTCACACA+TGG 0.647254 5:+38517284 MsG0580026495.01.T01:exon
CCAGGGGAACATTTCAACGG+CGG 0.654456 5:+38517521 MsG0580026495.01.T01:CDS
TTGTTGGTGAATATGGCGAA+CGG 0.683559 5:+38521949 MsG0580026495.01.T01:CDS
TTGGTGAATATGGCGAACGG+TGG 0.710701 5:+38521952 MsG0580026495.01.T01:CDS
TACTGGAGCGGTGAACACGG+AGG 0.748549 5:-38517570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAAATAATAATTTTT+TGG - Chr5:38521817-38521836 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+GGG - Chr5:38521862-38521881 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+TGG - Chr5:38521862-38521881 None:intergenic 0.0%
!!! AATTAATTAAATTAATGGAT+TGG + Chr5:38518564-38518583 MsG0580026495.01.T01:intron 10.0%
!!! ATTAAACTTATTTTAATGTA+TGG + Chr5:38520472-38520491 MsG0580026495.01.T01:intron 10.0%
!!! TTAAACTTATTTTAATGTAT+GGG + Chr5:38520473-38520492 MsG0580026495.01.T01:intron 10.0%
!! TAAAGTTATATATAATCCTA+AGG - Chr5:38521440-38521459 None:intergenic 15.0%
!! TAAGTTATATATAATCCTAA+GGG - Chr5:38521253-38521272 None:intergenic 15.0%
!! TAATGGAATATTATATTGAT+TGG + Chr5:38518189-38518208 MsG0580026495.01.T01:intron 15.0%
!! TTAAGTTATATATAATCCTA+AGG - Chr5:38521254-38521273 None:intergenic 15.0%
!! TTGTTCTACATAAATAAAAA+AGG + Chr5:38518463-38518482 MsG0580026495.01.T01:intron 15.0%
!!! ATAATATTCCATTAACATTT+TGG - Chr5:38518183-38518202 None:intergenic 15.0%
!!! ATTTTATGAGTTTGTATAAA+TGG + Chr5:38518387-38518406 MsG0580026495.01.T01:intron 15.0%
!!! CTAACTTTAATGTTTTAATT+TGG + Chr5:38518214-38518233 MsG0580026495.01.T01:intron 15.0%
!!! TCATGTATTTTTTTTTTTGT+TGG + Chr5:38519871-38519890 MsG0580026495.01.T01:intron 15.0%
!!! TTTTTATTCAAAGAAGTTTA+AGG + Chr5:38517988-38518007 MsG0580026495.01.T01:CDS 15.0%
!!! TTTTTTTTTTCTTTTTCAAG+AGG - Chr5:38517268-38517287 None:intergenic 15.0%
!! AACAAGTGACTAAATTAAAT+AGG - Chr5:38519298-38519317 None:intergenic 20.0%
!! AACTTCTTTGAATAAAAAGT+TGG - Chr5:38517986-38518005 None:intergenic 20.0%
!! AATGAAGTATACTCTTATTA+TGG + Chr5:38520777-38520796 MsG0580026495.01.T01:intron 20.0%
!! ATATATCCTCAAATCAAAAA+AGG - Chr5:38518444-38518463 None:intergenic 20.0%
!! GTATTTGATTACTTTAGATT+TGG + Chr5:38519169-38519188 MsG0580026495.01.T01:intron 20.0%
!! GTGAAAGAAGAAAAAAAAAA+CGG - Chr5:38522104-38522123 None:intergenic 20.0%
!! TAAATGACTATACTCTTTAT+AGG + Chr5:38521458-38521477 MsG0580026495.01.T01:intron 20.0%
!! TCAAAGAAAAATAAATGCAA+AGG + Chr5:38519391-38519410 MsG0580026495.01.T01:intron 20.0%
!!! AGTGTATTTTTTACTTGTTT+TGG + Chr5:38519526-38519545 MsG0580026495.01.T01:intron 20.0%
!!! GTAAAAATATTTTTTGGGAA+AGG + Chr5:38519963-38519982 MsG0580026495.01.T01:intron 20.0%
!!! TATTTTTCTTTGATTACAAG+AGG - Chr5:38519384-38519403 None:intergenic 20.0%
!!! TCATTCTTTTACTTGTTAAT+CGG + Chr5:38518756-38518775 MsG0580026495.01.T01:intron 20.0%
!!! TGTTACAACATAAATCTTTT+TGG + Chr5:38521571-38521590 MsG0580026495.01.T01:intron 20.0%
!!! TTTGATGCAAGAATTAATTT+TGG + Chr5:38520043-38520062 MsG0580026495.01.T01:intron 20.0%
!!! TTTTCACATATTGAAAAATC+AGG - Chr5:38520735-38520754 None:intergenic 20.0%
!!! TTTTTTCCTTTTTTGATTTG+AGG + Chr5:38518435-38518454 MsG0580026495.01.T01:intron 20.0%
! AAAACCCTTAGGATTATATA+TGG + Chr5:38520863-38520882 MsG0580026495.01.T01:intron 25.0%
! AAAACCGAAGAGAATATTAT+GGG - Chr5:38519573-38519592 None:intergenic 25.0%
! AAATTATCATACACATCCTA+AGG - Chr5:38520995-38521014 None:intergenic 25.0%
! AATACAATATGAAAACCCTT+AGG + Chr5:38520852-38520871 MsG0580026495.01.T01:intron 25.0%
! AATTATCATACACATCCTAA+GGG - Chr5:38520994-38521013 None:intergenic 25.0%
! AGTTCACAGAGAAAATAAAA+CGG - Chr5:38518415-38518434 None:intergenic 25.0%
! ATAACGTGATCAAATTATAC+GGG - Chr5:38518728-38518747 None:intergenic 25.0%
! ATAATAAATCGGTCAAAATC+GGG + Chr5:38518933-38518952 MsG0580026495.01.T01:intron 25.0%
! ATACACCATATATAATCCTA+AGG - Chr5:38520871-38520890 None:intergenic 25.0%
! ATATGTGAAAATTGTTAGAG+TGG + Chr5:38520744-38520763 MsG0580026495.01.T01:intron 25.0%
! ATGATAACATACACTTTGAA+GGG - Chr5:38522024-38522043 None:intergenic 25.0%
! CATAATAAATCGGTCAAAAT+CGG + Chr5:38518932-38518951 MsG0580026495.01.T01:intron 25.0%
! GATAACGTGATCAAATTATA+CGG - Chr5:38518729-38518748 None:intergenic 25.0%
! TAAGCATAACTATAAGAAGT+TGG - Chr5:38518022-38518041 None:intergenic 25.0%
! TACACCATATATAATCCTAA+GGG - Chr5:38520870-38520889 None:intergenic 25.0%
! TTATTCAAAGAAGTTTAAGG+AGG + Chr5:38517991-38518010 MsG0580026495.01.T01:CDS 25.0%
! TTTGATTACTTTAGATTTGG+AGG + Chr5:38519172-38519191 MsG0580026495.01.T01:intron 25.0%
!! AATGATTTTACCTATCTCAT+TGG + Chr5:38517320-38517339 MsG0580026495.01.T01:CDS 25.0%
!! ATTGTTGTAGAGGAAATTTT+GGG + Chr5:38517942-38517961 MsG0580026495.01.T01:CDS 25.0%
!! CATTGATTAACATTGATGTA+AGG + Chr5:38520640-38520659 MsG0580026495.01.T01:intron 25.0%
!! GTTCTTGCAATAATTTTATC+AGG + Chr5:38517342-38517361 MsG0580026495.01.T01:CDS 25.0%
!! TATTGTTGTAGAGGAAATTT+TGG + Chr5:38517941-38517960 MsG0580026495.01.T01:CDS 25.0%
!!! AAAATCAGGTTGAAAACTTA+TGG - Chr5:38520721-38520740 None:intergenic 25.0%
!!! AACATAAATCTTTTTGGTAG+TGG + Chr5:38521622-38521641 MsG0580026495.01.T01:intron 25.0%
!!! AATGTTTTAATTTGGACTTC+AGG + Chr5:38518222-38518241 MsG0580026495.01.T01:intron 25.0%
!!! GATTTTGACCGATTTATTAT+GGG - Chr5:38518933-38518952 None:intergenic 25.0%
!!! TAAACGACACTGTTTTAAAA+CGG + Chr5:38518126-38518145 MsG0580026495.01.T01:intron 25.0%
!!! TTGTTTTGGTATACATGAAA+TGG + Chr5:38519540-38519559 MsG0580026495.01.T01:intron 25.0%
AAAAAATTGTTGATGTGGAC+AGG + Chr5:38517422-38517441 MsG0580026495.01.T01:intron 30.0%
AAAAATTGTTGATGTGGACA+GGG + Chr5:38517423-38517442 MsG0580026495.01.T01:intron 30.0%
AATACAAGTCAAAGATGTGT+TGG + Chr5:38520075-38520094 MsG0580026495.01.T01:intron 30.0%
AATATTCTTGCGAATGTTCT+TGG + Chr5:38520209-38520228 MsG0580026495.01.T01:intron 30.0%
ACCTATATATACCAAGAGAT+TGG - Chr5:38519701-38519720 None:intergenic 30.0%
ACCTATGTTGAAATTAAGAG+AGG - Chr5:38519630-38519649 None:intergenic 30.0%
ACCTCTCTTAATTTCAACAT+AGG + Chr5:38519626-38519645 MsG0580026495.01.T01:intron 30.0%
ACGTATGATTATAAAGGAAG+TGG + Chr5:38519919-38519938 MsG0580026495.01.T01:intron 30.0%
AGGAATATCTTTAATCTCGA+TGG + Chr5:38519411-38519430 MsG0580026495.01.T01:intron 30.0%
AGTCCTACGTATGATTATAA+AGG + Chr5:38519913-38519932 MsG0580026495.01.T01:intron 30.0%
ATAAAACACAAAGACTCACA+TGG + Chr5:38520425-38520444 MsG0580026495.01.T01:intron 30.0%
ATTTCTGTTAAGCCGATAAA+CGG + Chr5:38517788-38517807 MsG0580026495.01.T01:CDS 30.0%
CTATGACAAATGATGAGTAT+TGG + Chr5:38520598-38520617 MsG0580026495.01.T01:intron 30.0%
CTTCCTTTATAATCATACGT+AGG - Chr5:38519919-38519938 None:intergenic 30.0%
GAAAACCGAAGAGAATATTA+TGG - Chr5:38519574-38519593 None:intergenic 30.0%
GAATACAATCTGTATGTCTT+TGG + Chr5:38520181-38520200 MsG0580026495.01.T01:intron 30.0%
GACAATGCATAAAATATGCA+AGG - Chr5:38521667-38521686 None:intergenic 30.0%
GATGATAACATACACTTTGA+AGG - Chr5:38522025-38522044 None:intergenic 30.0%
TACAATGAAGTTTGTGATCA+TGG - Chr5:38518268-38518287 None:intergenic 30.0%
TCAATATAGAGAACGAGAAA+TGG + Chr5:38520135-38520154 MsG0580026495.01.T01:intron 30.0%
TCCAATCTCTTGGTATATAT+AGG + Chr5:38519697-38519716 MsG0580026495.01.T01:intron 30.0%
TCTTCCCATAATATTCTCTT+CGG + Chr5:38519566-38519585 MsG0580026495.01.T01:intron 30.0%
TGTCTTCATAGGAATAATAG+TGG + Chr5:38519131-38519150 MsG0580026495.01.T01:intron 30.0%
TGTGAAAGCCAAAATGTTAA+TGG + Chr5:38518172-38518191 MsG0580026495.01.T01:intron 30.0%
TTAACCTGAGTAATGAAGTA+GGG + Chr5:38519003-38519022 MsG0580026495.01.T01:intron 30.0%
TTAATATGCTCACATGAAGA+TGG - Chr5:38520457-38520476 None:intergenic 30.0%
TTGCCAAAAAATTGTTGATG+TGG + Chr5:38517417-38517436 MsG0580026495.01.T01:intron 30.0%
TTGTTGCTAATTGTCTTCAT+AGG + Chr5:38519120-38519139 MsG0580026495.01.T01:intron 30.0%
TTTAACCTGAGTAATGAAGT+AGG + Chr5:38519002-38519021 MsG0580026495.01.T01:intron 30.0%
! AAAGTTGGTTTACAAGTAGA+AGG - Chr5:38517971-38517990 None:intergenic 30.0%
! AACCTGTTGAAACTTTTTGT+AGG + Chr5:38521895-38521914 MsG0580026495.01.T01:intron 30.0%
! AAGTTGGTTTACAAGTAGAA+GGG - Chr5:38517970-38517989 None:intergenic 30.0%
! CAATTTCCTTTTCCGTTTAT+CGG - Chr5:38517803-38517822 None:intergenic 30.0%
! GTTATTGTTGTTGGTGAATA+TGG + Chr5:38521942-38521961 MsG0580026495.01.T01:CDS 30.0%
! TATCATCTAAGTGCTTTGAA+TGG + Chr5:38520354-38520373 MsG0580026495.01.T01:intron 30.0%
!! AATTAAGAAGTGTTTCAACG+TGG + Chr5:38520562-38520581 MsG0580026495.01.T01:intron 30.0%
!! CGATTTTGACCGATTTATTA+TGG - Chr5:38518934-38518953 None:intergenic 30.0%
!! TTTATCGGCTTAACAGAAAT+GGG - Chr5:38517788-38517807 None:intergenic 30.0%
!! TTTTGTAGGCTTTTGAGAAA+GGG + Chr5:38521909-38521928 MsG0580026495.01.T01:intron 30.0%
!! TTTTTGTAGGCTTTTGAGAA+AGG + Chr5:38521908-38521927 MsG0580026495.01.T01:intron 30.0%
!!! ACAGGGTAGATAATTTTTTG+TGG + Chr5:38518956-38518975 MsG0580026495.01.T01:intron 30.0%
!!! AGGGTAGATAATTTTTTGTG+GGG + Chr5:38518958-38518977 MsG0580026495.01.T01:intron 30.0%
!!! ATATTTTTTGGGAAAGGTTG+TGG + Chr5:38519969-38519988 MsG0580026495.01.T01:intron 30.0%
!!! CAAGAATTAATTTTGGCTTG+TGG + Chr5:38520050-38520069 MsG0580026495.01.T01:intron 30.0%
!!! CAGGGTAGATAATTTTTTGT+GGG + Chr5:38518957-38518976 MsG0580026495.01.T01:intron 30.0%
!!! TGTCCACATCAACAATTTTT+TGG - Chr5:38517423-38517442 None:intergenic 30.0%
AAAATCATAGCAGTCACACA+TGG + Chr5:38517284-38517303 MsG0580026495.01.T01:exon 35.0%
AACTTTGACCAAAATGGAGA+CGG + Chr5:38517629-38517648 MsG0580026495.01.T01:CDS 35.0%
AATATACGCTAAGACTGTCA+TGG - Chr5:38518876-38518895 None:intergenic 35.0%
AATGGTGTATATCCTCAATC+TGG - Chr5:38519598-38519617 None:intergenic 35.0%
AGACTTAACGGAAAGTTCTT+TGG - Chr5:38517867-38517886 None:intergenic 35.0%
AGCCTACAAAAAGTTTCAAC+AGG - Chr5:38521900-38521919 None:intergenic 35.0%
AGCGTCTTGTATAATCCTAA+TGG - Chr5:38520103-38520122 None:intergenic 35.0%
ATAGTGGTAGCAAGATTGAA+AGG + Chr5:38519147-38519166 MsG0580026495.01.T01:intron 35.0%
ATCATCATCTCGAATAACGA+GGG - Chr5:38520532-38520551 None:intergenic 35.0%
ATGAACTGCTCGTTCAAAAA+CGG - Chr5:38520301-38520320 None:intergenic 35.0%
ATTGCAAGAACCAATGAGAT+AGG - Chr5:38517333-38517352 None:intergenic 35.0%
CACCATAGTAAACTATTGCA+AGG + Chr5:38517475-38517494 MsG0580026495.01.T01:CDS 35.0%
CTCCTTGCAATAGTTTACTA+TGG - Chr5:38517480-38517499 None:intergenic 35.0%
GAACTTTCCGTTAAGTCTAA+CGG + Chr5:38517869-38517888 MsG0580026495.01.T01:CDS 35.0%
GACTTAACGGAAAGTTCTTT+GGG - Chr5:38517866-38517885 None:intergenic 35.0%
GATCACAAACTTCATTGTAG+TGG + Chr5:38518269-38518288 MsG0580026495.01.T01:CDS 35.0%
GATTTCATTGTTGCAGTAAC+CGG + Chr5:38519668-38519687 MsG0580026495.01.T01:intron 35.0%
GCAAATGCTCAAGTTAATCT+TGG + Chr5:38519233-38519252 MsG0580026495.01.T01:intron 35.0%
GGGAGAAATACTATGAGATA+AGG + Chr5:38519503-38519522 MsG0580026495.01.T01:intron 35.0%
GTAGTCATAGTGAATCCTAA+GGG - Chr5:38521418-38521437 None:intergenic 35.0%
GTGCATGTGAAAATACTTGT+TGG - Chr5:38518052-38518071 None:intergenic 35.0%
GTGTTTAGCATTTGTCTAGA+TGG - Chr5:38518666-38518685 None:intergenic 35.0%
TACTTTAGATTTGGAGGTTG+TGG + Chr5:38519178-38519197 MsG0580026495.01.T01:intron 35.0%
TATCATCATCTCGAATAACG+AGG - Chr5:38520533-38520552 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - Chr5:38521662-38521681 None:intergenic 35.0%
TGTGACTGCTATGATTGATA+AGG - Chr5:38517237-38517256 None:intergenic 35.0%
TTAGCATTTGTCTAGATGGA+TGG - Chr5:38518662-38518681 None:intergenic 35.0%
TTATGGTACAACTCCTATCT+TGG - Chr5:38520704-38520723 None:intergenic 35.0%
TTCAGCTGCAAATTTGAGAA+CGG - Chr5:38522167-38522186 None:intergenic 35.0%
TTCGATCGAGTTTCTATCTT+TGG + Chr5:38519357-38519376 MsG0580026495.01.T01:intron 35.0%
! AAAGATGTGTTGGTACCATT+AGG + Chr5:38520085-38520104 MsG0580026495.01.T01:intron 35.0%
! ACAAGTATTTTCACATGCAC+CGG + Chr5:38518052-38518071 MsG0580026495.01.T01:CDS 35.0%
! ACTGATGAGTATTGTTGTAG+AGG + Chr5:38517932-38517951 MsG0580026495.01.T01:CDS 35.0%
! CAATGATGTGTCATTGTATG+TGG + Chr5:38519060-38519079 MsG0580026495.01.T01:intron 35.0%
! TAAGAGAGGTATGTGCTTAA+TGG - Chr5:38519616-38519635 None:intergenic 35.0%
! TACGGTTTTGCTTATACTGA+AGG - Chr5:38518612-38518631 None:intergenic 35.0%
! TGTGTCATTGTATGTGGTAT+TGG + Chr5:38519066-38519085 MsG0580026495.01.T01:intron 35.0%
! TTAGCGTATATTTTGCACCT+AGG + Chr5:38518884-38518903 MsG0580026495.01.T01:intron 35.0%
! TTGACCGATTTATTATGGGT+CGG - Chr5:38518929-38518948 None:intergenic 35.0%
!! AAATGATGAGTATTGGTAGC+GGG + Chr5:38520605-38520624 MsG0580026495.01.T01:intron 35.0%
!! ATGCTTTAGGTGTTGCTTTA+AGG + Chr5:38519450-38519469 MsG0580026495.01.T01:intron 35.0%
!! CAAATGATGAGTATTGGTAG+CGG + Chr5:38520604-38520623 MsG0580026495.01.T01:intron 35.0%
!! CTTTGGGACAAGTTAATCTT+AGG - Chr5:38517850-38517869 None:intergenic 35.0%
!! GTTTATCGGCTTAACAGAAA+TGG - Chr5:38517789-38517808 None:intergenic 35.0%
!! TACACTTTGAAGGGTAGTTT+TGG - Chr5:38522015-38522034 None:intergenic 35.0%
!! TCAGCTCTTAGTTTGTGAAT+TGG + Chr5:38518350-38518369 MsG0580026495.01.T01:intron 35.0%
!! TTTGTAGGCTTTTGAGAAAG+GGG + Chr5:38521910-38521929 MsG0580026495.01.T01:intron 35.0%
!!! GGGTAGATAATTTTTTGTGG+GGG + Chr5:38518959-38518978 MsG0580026495.01.T01:intron 35.0%
!!! TTTGAAGGGTAGTTTTGGAT+CGG - Chr5:38522010-38522029 None:intergenic 35.0%
AAAGGAAATTGCTCAACTGC+TGG + Chr5:38517812-38517831 MsG0580026495.01.T01:CDS 40.0%
AAGATTTGAACCCACGTAAG+AGG - Chr5:38519813-38519832 None:intergenic 40.0%
AATCTTGGCTGCTTCATGAA+TGG + Chr5:38519248-38519267 MsG0580026495.01.T01:intron 40.0%
AATTTGAGAACGGCGGTAAA+AGG - Chr5:38522157-38522176 None:intergenic 40.0%
ACTATTGCAAGGAGACTCTT+TGG + Chr5:38517486-38517505 MsG0580026495.01.T01:CDS 40.0%
AGGATTATACAAGACGCTGA+AGG + Chr5:38520105-38520124 MsG0580026495.01.T01:intron 40.0%
AGGCTAACATCGTAGAAATC+GGG - Chr5:38517746-38517765 None:intergenic 40.0%
CAGGCTAACATCGTAGAAAT+CGG - Chr5:38517747-38517766 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+GGG - Chr5:38521660-38521679 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - Chr5:38521661-38521680 None:intergenic 40.0%
GGATTCACTATGACTACCTT+AGG + Chr5:38521421-38521440 MsG0580026495.01.T01:intron 40.0%
GGTAGTCATAGTGAATCCTA+AGG - Chr5:38521419-38521438 None:intergenic 40.0%
GGTCTTTCCGTTAGACTTAA+CGG - Chr5:38517879-38517898 None:intergenic 40.0%
GTGTCAATGTCTCATGCATA+TGG + Chr5:38518493-38518512 MsG0580026495.01.T01:intron 40.0%
GTTAAGCCGATAAACGGAAA+AGG + Chr5:38517794-38517813 MsG0580026495.01.T01:CDS 40.0%
TCATCATCTCGAATAACGAG+GGG - Chr5:38520531-38520550 None:intergenic 40.0%
TTTCCAGGGGAACATTTCAA+CGG + Chr5:38517518-38517537 MsG0580026495.01.T01:CDS 40.0%
TTTGCACACTCATTCGCTTA+TGG - Chr5:38519218-38519237 None:intergenic 40.0%
! AGCGTTCGAGTTATTGTTGT+TGG + Chr5:38521933-38521952 MsG0580026495.01.T01:CDS 40.0%
! ATTTTGCACCTAGGATTGAC+CGG + Chr5:38518893-38518912 MsG0580026495.01.T01:intron 40.0%
! GTCATTGTATGTGGTATTGG+AGG + Chr5:38519069-38519088 MsG0580026495.01.T01:intron 40.0%
! TATTTTCACATGCACCGGAA+CGG + Chr5:38518057-38518076 MsG0580026495.01.T01:CDS 40.0%
! TGACCGATTTATTATGGGTC+GGG - Chr5:38518928-38518947 None:intergenic 40.0%
! TGTATGTGGTATTGGAGGAA+TGG + Chr5:38519074-38519093 MsG0580026495.01.T01:intron 40.0%
! TTGTTGGTGAATATGGCGAA+CGG + Chr5:38521949-38521968 MsG0580026495.01.T01:CDS 40.0%
!! CACCACTTTAAAATGTGGAG+GGG + Chr5:38517676-38517695 MsG0580026495.01.T01:CDS 40.0%
!! CTTCATTGTAGTGGATCACA+AGG + Chr5:38518278-38518297 MsG0580026495.01.T01:CDS 40.0%
!! GAGCTTTGGGAGAAACATAA+GGG + Chr5:38520248-38520267 MsG0580026495.01.T01:intron 40.0%
!! GCACCACTTTAAAATGTGGA+GGG + Chr5:38517675-38517694 MsG0580026495.01.T01:CDS 40.0%
!!! AAATCTTTTTGGTAGTGGCC+AGG + Chr5:38521627-38521646 MsG0580026495.01.T01:intron 40.0%
!!! AATCTTTTTGGTAGTGGCCA+GGG + Chr5:38521628-38521647 MsG0580026495.01.T01:intron 40.0%
!!! CGACACTGTTTTAAAACGGA+TGG + Chr5:38518130-38518149 MsG0580026495.01.T01:intron 40.0%
AAATCGGTCAAAATCGGGAC+AGG + Chr5:38518938-38518957 MsG0580026495.01.T01:intron 45.0%
AAGTCTAACGGAAAGACCGT+TGG + Chr5:38517881-38517900 MsG0580026495.01.T01:CDS 45.0%
AAGTTGGAGTGGCCGAATTT+GGG + Chr5:38517592-38517611 MsG0580026495.01.T01:CDS 45.0%
AATCGGTCAAAATCGGGACA+GGG + Chr5:38518939-38518958 MsG0580026495.01.T01:intron 45.0%
ACCAGCGCTATTATCACCAA+TGG + Chr5:38522208-38522227 MsG0580026495.01.T01:CDS 45.0%
ACCGAAGTGGCATTGTTCTT+AGG + Chr5:38519481-38519500 MsG0580026495.01.T01:intron 45.0%
ACCTGAGTAATGAAGTAGGG+TGG + Chr5:38519006-38519025 MsG0580026495.01.T01:intron 45.0%
ACGCTAAGACTGTCATGGTA+AGG - Chr5:38518871-38518890 None:intergenic 45.0%
AGCTGCAAATTTGAGAACGG+CGG - Chr5:38522164-38522183 None:intergenic 45.0%
AGTCTAACGGAAAGACCGTT+GGG + Chr5:38517882-38517901 MsG0580026495.01.T01:CDS 45.0%
ATAACCTCCAGCGCACATTA+CGG - Chr5:38518630-38518649 None:intergenic 45.0%
CAAGGCTTAAGGTCGTTGAT+TGG + Chr5:38518296-38518315 MsG0580026495.01.T01:CDS 45.0%
CACAAACCTGTCAGCACAAA+AGG - Chr5:38518095-38518114 None:intergenic 45.0%
CAGCCCGACCCATAATAAAT+CGG + Chr5:38518922-38518941 MsG0580026495.01.T01:intron 45.0%
CATCATCTCGAATAACGAGG+GGG - Chr5:38520530-38520549 None:intergenic 45.0%
CATTGTTGCAGTAACCGGAA+AGG + Chr5:38519673-38519692 MsG0580026495.01.T01:intron 45.0%
CCAAGAGATTGGATCCTTTC+CGG - Chr5:38519690-38519709 None:intergenic 45.0%
CCGAAGTGGCATTGTTCTTA+GGG + Chr5:38519482-38519501 MsG0580026495.01.T01:intron 45.0%
CGAAGTGGCATTGTTCTTAG+GGG + Chr5:38519483-38519502 MsG0580026495.01.T01:intron 45.0%
CGATTTCTACGATGTTAGCC+TGG + Chr5:38517745-38517764 MsG0580026495.01.T01:CDS 45.0%
GGAGGATTCGTCCTTAAACA+AGG + Chr5:38517542-38517561 MsG0580026495.01.T01:CDS 45.0%
GGGTGCAACTTTGACCAAAA+TGG + Chr5:38517623-38517642 MsG0580026495.01.T01:CDS 45.0%
GTCGTCATCTAAGGAGCTTT+GGG + Chr5:38520235-38520254 MsG0580026495.01.T01:intron 45.0%
TAAAGCATACCCCATGCACA+CGG - Chr5:38519438-38519457 None:intergenic 45.0%
TAAGAGCTTCCTGCCAAGAT+AGG + Chr5:38520688-38520707 MsG0580026495.01.T01:intron 45.0%
TCTTGGTACGTCGTCATCTA+AGG + Chr5:38520226-38520245 MsG0580026495.01.T01:intron 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG - Chr5:38521689-38521708 None:intergenic 45.0%
TTGTGGGGGTTCTTAAGCAA+TGG + Chr5:38518973-38518992 MsG0580026495.01.T01:intron 45.0%
! ACCATTGGTGATAATAGCGC+TGG - Chr5:38522212-38522231 None:intergenic 45.0%
! CCCTAAGAACAATGCCACTT+CGG - Chr5:38519485-38519504 None:intergenic 45.0%
! CGGAGGATTGTCCTTGTTTA+AGG - Chr5:38517556-38517575 None:intergenic 45.0%
! CTGGTGGATAGCAATGATGA+TGG + Chr5:38518322-38518341 MsG0580026495.01.T01:CDS 45.0%
! CTTCGGTTTTCTCCAGATTG+AGG + Chr5:38519583-38519602 MsG0580026495.01.T01:intron 45.0%
! TAAGGTCGTTGATTGGAAGC+TGG + Chr5:38518303-38518322 MsG0580026495.01.T01:CDS 45.0%
! TAAGTTGGAGTGGCCGAATT+TGG + Chr5:38517591-38517610 MsG0580026495.01.T01:CDS 45.0%
!! ACTTTAAAATGTGGAGGGGC+AGG + Chr5:38517680-38517699 MsG0580026495.01.T01:CDS 45.0%
!! GGAGCTTTGGGAGAAACATA+AGG + Chr5:38520247-38520266 MsG0580026495.01.T01:intron 45.0%
!! GGCACCACTTTAAAATGTGG+AGG + Chr5:38517674-38517693 MsG0580026495.01.T01:CDS 45.0%
!! GTAGTGGATCACAAGGCTTA+AGG + Chr5:38518285-38518304 MsG0580026495.01.T01:CDS 45.0%
!! TAAGGTGTTGTTGACCGAAG+TGG + Chr5:38519468-38519487 MsG0580026495.01.T01:intron 45.0%
!! TGCCCCTCCACATTTTAAAG+TGG - Chr5:38517681-38517700 None:intergenic 45.0%
!! TGCGGCACCACTTTAAAATG+TGG + Chr5:38517671-38517690 MsG0580026495.01.T01:CDS 45.0%
!! TTGTTGCCTTTTGTGCTGAC+AGG + Chr5:38518086-38518105 MsG0580026495.01.T01:CDS 45.0%
!! ATGTTAATTAATTAAATTAA+TGG + Chr5:38518559-38518578 MsG0580026495.01.T01:intron 5.0%
!! ATTAATTATAATTAAAATGA+AGG + Chr5:38519779-38519798 MsG0580026495.01.T01:intron 5.0%
!!! ATATTGTAAAAATATTTTTT+GGG + Chr5:38519958-38519977 MsG0580026495.01.T01:intron 5.0%
!!! TATATTGTAAAAATATTTTT+TGG + Chr5:38519957-38519976 MsG0580026495.01.T01:intron 5.0%
!!! TTATTTTATTTTATAATCAT+TGG + Chr5:38518810-38518829 MsG0580026495.01.T01:intron 5.0%
AAAACCGTAATGTGCGCTGG+AGG + Chr5:38518623-38518642 MsG0580026495.01.T01:intron 50.0%
ACAAGCACTTCGACACCCAA+CGG - Chr5:38517900-38517919 None:intergenic 50.0%
ACCCAGATCGAGCCCAAATT+CGG - Chr5:38517607-38517626 None:intergenic 50.0%
ACTTACTGGAGCGGTGAACA+CGG - Chr5:38517576-38517595 None:intergenic 50.0%
AGCAAAACCGTAATGTGCGC+TGG + Chr5:38518620-38518639 MsG0580026495.01.T01:intron 50.0%
ATTCGGCCACTCCAACTTAC+TGG - Chr5:38517590-38517609 None:intergenic 50.0%
CCGGAAAGGATCCAATCTCT+TGG + Chr5:38519687-38519706 MsG0580026495.01.T01:intron 50.0%
CGATTTATTATGGGTCGGGC+TGG - Chr5:38518924-38518943 None:intergenic 50.0%
CGTCGTCATCTAAGGAGCTT+TGG + Chr5:38520234-38520253 MsG0580026495.01.T01:intron 50.0%
GCCACCCTACTTCATTACTC+AGG - Chr5:38519010-38519029 None:intergenic 50.0%
GGCAACAACGTAATCCGTTC+CGG - Chr5:38518074-38518093 None:intergenic 50.0%
GGTACAACTCCTATCTTGGC+AGG - Chr5:38520700-38520719 None:intergenic 50.0%
GGTGGCAACTTGAGGTTGAA+TGG + Chr5:38519024-38519043 MsG0580026495.01.T01:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - Chr5:38521690-38521709 None:intergenic 50.0%
GTGTGCATGGGGTATGCTTT+AGG + Chr5:38519437-38519456 MsG0580026495.01.T01:intron 50.0%
TGAAGTAGGGTGGCAACTTG+AGG + Chr5:38519016-38519035 MsG0580026495.01.T01:intron 50.0%
TGTTCACCGCTCCAGTAAGT+TGG + Chr5:38517576-38517595 MsG0580026495.01.T01:CDS 50.0%
TTGGTGAATATGGCGAACGG+TGG + Chr5:38521952-38521971 MsG0580026495.01.T01:CDS 50.0%
TTTGGCCAGCTGTGTTTCCA+GGG + Chr5:38517504-38517523 MsG0580026495.01.T01:CDS 50.0%
! AGGTCTTGTGTCCTCTTACG+TGG + Chr5:38519799-38519818 MsG0580026495.01.T01:intron 50.0%
! GGCATTGTCCGTCTCCATTT+TGG - Chr5:38517640-38517659 None:intergenic 50.0%
! GGTCTTGTGTCCTCTTACGT+GGG + Chr5:38519800-38519819 MsG0580026495.01.T01:intron 50.0%
! TACGATGTTAGCCTGGTCGA+TGG + Chr5:38517752-38517771 MsG0580026495.01.T01:CDS 50.0%
!! ATAATAGCGCTGGTCTGTGG+AGG - Chr5:38522202-38522221 None:intergenic 50.0%
!! GATGAGTATTGGTAGCGGGT+TGG + Chr5:38520609-38520628 MsG0580026495.01.T01:intron 50.0%
!! GTGATAATAGCGCTGGTCTG+TGG - Chr5:38522205-38522224 None:intergenic 50.0%
ATCTCGATGGACCGTGTGCA+TGG + Chr5:38519424-38519443 MsG0580026495.01.T01:intron 55.0%
CAATGCCAAACCGGTGCATG+CGG + Chr5:38517653-38517672 MsG0580026495.01.T01:CDS 55.0%
CCAACTGAGCTAAGCTCACG+AGG + Chr5:38521691-38521710 MsG0580026495.01.T01:intron 55.0%
CCAGGGGAACATTTCAACGG+CGG + Chr5:38517521-38517540 MsG0580026495.01.T01:CDS 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - Chr5:38521694-38521713 None:intergenic 55.0%
CTTTGGCCAGCTGTGTTTCC+AGG + Chr5:38517503-38517522 MsG0580026495.01.T01:CDS 55.0%
GCACATTGAAGCCATCGACC+AGG - Chr5:38517766-38517785 None:intergenic 55.0%
GCCACTCCAACTTACTGGAG+CGG - Chr5:38517585-38517604 None:intergenic 55.0%
GCCGAATTTGGGCTCGATCT+GGG + Chr5:38517603-38517622 MsG0580026495.01.T01:CDS 55.0%
GGAGACGGACAATGCCAAAC+CGG + Chr5:38517644-38517663 MsG0580026495.01.T01:CDS 55.0%
GTGAATATGGCGAACGGTGG+TGG + Chr5:38521955-38521974 MsG0580026495.01.T01:CDS 55.0%
GTGAATTCAGCGAGCGATGC+TGG - Chr5:38517713-38517732 None:intergenic 55.0%
TCTCGATGGACCGTGTGCAT+GGG + Chr5:38519425-38519444 MsG0580026495.01.T01:intron 55.0%
TGCACCTAGGATTGACCGGA+TGG + Chr5:38518897-38518916 MsG0580026495.01.T01:intron 55.0%
TGGTCCATCCGGTCAATCCT+AGG - Chr5:38518904-38518923 None:intergenic 55.0%
TGTTCCCCTGGAAACACAGC+TGG - Chr5:38517512-38517531 None:intergenic 55.0%
TTGGCCAGCTGTGTTTCCAG+GGG + Chr5:38517505-38517524 MsG0580026495.01.T01:CDS 55.0%
! ACCGCTCCAGTAAGTTGGAG+TGG + Chr5:38517581-38517600 MsG0580026495.01.T01:CDS 55.0%
! ATACGGGCGTGCAAGTGTTG+AGG - Chr5:38518712-38518731 None:intergenic 55.0%
! GCGGTAAAAGGTGCAGCTTC+AGG - Chr5:38522145-38522164 None:intergenic 55.0%
! GGTCGTTGATTGGAAGCTGG+TGG + Chr5:38518306-38518325 MsG0580026495.01.T01:CDS 55.0%
!! TAAAGTGGTGCCGCATGCAC+CGG - Chr5:38517666-38517685 None:intergenic 55.0%
!! TATGGCGAACGGTGGTGGAA+AGG + Chr5:38521960-38521979 MsG0580026495.01.T01:CDS 55.0%
AAGGTCCGGGGTTCAAACCC+TGG - Chr5:38521648-38521667 None:intergenic 60.0%
AGTGGCCAGGGTTTGAACCC+CGG + Chr5:38521640-38521659 MsG0580026495.01.T01:intron 60.0%
CCGCCGTTGAAATGTTCCCC+TGG - Chr5:38517524-38517543 None:intergenic 60.0%
CTCGATGGACCGTGTGCATG+GGG + Chr5:38519426-38519445 MsG0580026495.01.T01:intron 60.0%
GGCCGAATTTGGGCTCGATC+TGG + Chr5:38517602-38517621 MsG0580026495.01.T01:CDS 60.0%
GGGGAACATTTCAACGGCGG+AGG + Chr5:38517524-38517543 MsG0580026495.01.T01:CDS 60.0%
TACTGGAGCGGTGAACACGG+AGG - Chr5:38517573-38517592 None:intergenic 60.0%
!! ATGGGTCGGGCTGGTCCATC+CGG - Chr5:38518915-38518934 None:intergenic 65.0%
!! TGGTGCCGCATGCACCGGTT+TGG - Chr5:38517661-38517680 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 38517222 38522240 38517222 ID=MsG0580026495.01;Name=MsG0580026495.01
Chr5 mRNA 38517222 38522240 38517222 ID=MsG0580026495.01.T01;Parent=MsG0580026495.01;Name=MsG0580026495.01.T01;_AED=0.39;_eAED=0.40;_QI=81|0.75|0.4|1|0.75|0.8|5|0|351
Chr5 exon 38517222 38517363 38517222 ID=MsG0580026495.01.T01:exon:36715;Parent=MsG0580026495.01.T01
Chr5 exon 38517444 38518107 38517444 ID=MsG0580026495.01.T01:exon:36716;Parent=MsG0580026495.01.T01
Chr5 exon 38518244 38518359 38518244 ID=MsG0580026495.01.T01:exon:36717;Parent=MsG0580026495.01.T01
Chr5 exon 38521926 38522031 38521926 ID=MsG0580026495.01.T01:exon:36718;Parent=MsG0580026495.01.T01
Chr5 exon 38522132 38522240 38522132 ID=MsG0580026495.01.T01:exon:36719;Parent=MsG0580026495.01.T01
Chr5 five_prime_UTR 38517222 38517302 38517222 ID=MsG0580026495.01.T01:five_prime_utr;Parent=MsG0580026495.01.T01
Chr5 CDS 38517303 38517363 38517303 ID=MsG0580026495.01.T01:cds;Parent=MsG0580026495.01.T01
Chr5 CDS 38517444 38518107 38517444 ID=MsG0580026495.01.T01:cds;Parent=MsG0580026495.01.T01
Chr5 CDS 38518244 38518359 38518244 ID=MsG0580026495.01.T01:cds;Parent=MsG0580026495.01.T01
Chr5 CDS 38521926 38522031 38521926 ID=MsG0580026495.01.T01:cds;Parent=MsG0580026495.01.T01
Chr5 CDS 38522132 38522240 38522132 ID=MsG0580026495.01.T01:cds;Parent=MsG0580026495.01.T01
Gene Sequence

>MsG0580026495.01.T01

ATGGCTTTGCATCTTCAAATGATTTTACCTATCTCATTGGTTCTTGCAATAATTTTATCAGGGCAAAGAACATGTGAGTCAGCAAGAGTATTCACCATAGTAAACTATTGCAAGGAGACTCTTTGGCCAGCTGTGTTTCCAGGGGAACATTTCAACGGCGGAGGATTCGTCCTTAAACAAGGACAATCCTCCGTGTTCACCGCTCCAGTAAGTTGGAGTGGCCGAATTTGGGCTCGATCTGGGTGCAACTTTGACCAAAATGGAGACGGACAATGCCAAACCGGTGCATGCGGCACCACTTTAAAATGTGGAGGGGCAGGAAAAACTCCAGCATCGCTCGCTGAATTCACACTCGCTCAACCCGATTTCTACGATGTTAGCCTGGTCGATGGCTTCAATGTGCCCATTTCTGTTAAGCCGATAAACGGAAAAGGAAATTGCTCAACTGCTGGATGTGATTCTGACCTAAGATTAACTTGTCCCAAAGAACTTTCCGTTAAGTCTAACGGAAAGACCGTTGGGTGTCGAAGTGCTTGTGATGTGTTTAATACTGATGAGTATTGTTGTAGAGGAAATTTTGGGAACCCTTCTACTTGTAAACCAACTTTTTATTCAAAGAAGTTTAAGGAGGCTTGTCCAACTTCTTATAGTTATGCTTATGATGATCCAACAAGTATTTTCACATGCACCGGAACGGATTACGTTGTTGCCTTTTGTGCTGACAGGAAGAAACAGATGTGCACTTACCATGATCACAAACTTCATTGTAGTGGATCACAAGGCTTAAGGTCGTTGATTGGAAGCTGGTGGATAGCAATGATGATGGTGTTTTCAGCTCTTAAAAGGGGAGCGTTCGAGTTATTGTTGTTGGTGAATATGGCGAACGGTGGTGGAAAGGTTTCTTTCAAAGTCACTCTCACTTCCGATCCAAAACTACCCTTCAAAGTTTTCAGTGTTCCTGAAGCTGCACCTTTTACCGCCGTTCTCAAATTTGCAGCTGAAGAATTCAAAGTTCCTCCACAGACCAGCGCTATTATCACCAATGGTAATTTCTGA
Protein sequence

>MsG0580026495.01.T01

MALHLQMILPISLVLAIILSGQRTCESARVFTIVNYCKETLWPAVFPGEHFNGGGFVLKQGQSSVFTAPVSWSGRIWARSGCNFDQNGDGQCQTGACGTTLKCGGAGKTPASLAEFTLAQPDFYDVSLVDGFNVPISVKPINGKGNCSTAGCDSDLRLTCPKELSVKSNGKTVGCRSACDVFNTDEYCCRGNFGNPSTCKPTFYSKKFKEACPTSYSYAYDDPTSIFTCTGTDYVVAFCADRKKQMCTYHDHKLHCSGSQGLRSLIGSWWIAMMMVFSALKRGAFELLLLVNMANGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNGNF*