Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029496.01.T01 | XP_003617059.1 | 95.184 | 353 | 10 | 3 | 1 | 353 | 1 | 346 | 0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029496.01.T01 | G7KHG6 | 95.184 | 353 | 10 | 3 | 1 | 353 | 1 | 346 | 0.0 | 668 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000024.01 | MsG0580029496.01 | 0.837197 | 5.989852e-57 | 7.722998e-54 |
| MsG0180000983.01 | MsG0580029496.01 | 0.870929 | 1.006217e-66 | 3.984982e-63 |
| MsG0180004099.01 | MsG0580029496.01 | 0.830712 | 2.516130e-55 | 2.672479e-52 |
| MsG0180004970.01 | MsG0580029496.01 | 0.803355 | 3.626381e-49 | 1.818389e-46 |
| MsG0180005924.01 | MsG0580029496.01 | 0.815418 | 9.337757e-52 | 6.434421e-49 |
| MsG0380011640.01 | MsG0580029496.01 | 0.882287 | 1.182651e-70 | 7.162574e-67 |
| MsG0380011648.01 | MsG0580029496.01 | 0.811803 | 5.831859e-51 | 3.644838e-48 |
| MsG0380013636.01 | MsG0580029496.01 | 0.830688 | 2.550334e-55 | 2.706898e-52 |
| MsG0480023130.01 | MsG0580029496.01 | 0.849131 | 3.935893e-60 | 7.389167e-57 |
| MsG0580024506.01 | MsG0580029496.01 | 0.827781 | 1.294019e-54 | 1.261692e-51 |
| MsG0580025766.01 | MsG0580029496.01 | 0.813219 | 2.859240e-51 | 1.855994e-48 |
| MsG0380015185.01 | MsG0580029496.01 | 0.840883 | 6.650094e-58 | 9.604544e-55 |
| MsG0380015190.01 | MsG0580029496.01 | 0.855455 | 6.235879e-62 | 1.440609e-58 |
| MsG0380015736.01 | MsG0580029496.01 | 0.820593 | 6.320403e-53 | 5.022053e-50 |
| MsG0380015805.01 | MsG0580029496.01 | 0.834415 | 3.036975e-56 | 3.601711e-53 |
| MsG0380016480.01 | MsG0580029496.01 | 0.827971 | 1.164893e-54 | 1.142272e-51 |
| MsG0380017422.01 | MsG0580029496.01 | 0.814174 | 1.761966e-51 | 1.173811e-48 |
| MsG0380017779.01 | MsG0580029496.01 | 0.824489 | 7.851775e-54 | 6.964975e-51 |
| MsG0480018346.01 | MsG0580029496.01 | 0.844181 | 8.862860e-59 | 1.419441e-55 |
| MsG0580026307.01 | MsG0580029496.01 | 0.851652 | 7.719338e-61 | 1.573139e-57 |
| MsG0580026308.01 | MsG0580029496.01 | 0.814230 | 1.712506e-51 | 1.142608e-48 |
| MsG0580026495.01 | MsG0580029496.01 | 0.810595 | 1.066189e-50 | 6.453791e-48 |
| MsG0580028432.01 | MsG0580029496.01 | 0.830906 | 2.255880e-55 | 2.409827e-52 |
| MsG0580029494.01 | MsG0580029496.01 | 0.847432 | 1.160695e-59 | 2.062745e-56 |
| MsG0580029496.01 | MsG0780037371.01 | 0.810590 | 1.068707e-50 | 6.468194e-48 |
| MsG0580029496.01 | MsG0780038655.01 | 0.821994 | 3.003520e-53 | 2.482173e-50 |
| MsG0580029496.01 | MsG0780038935.01 | 0.801305 | 9.585576e-49 | 4.562418e-46 |
| MsG0580029496.01 | MsG0780040336.01 | 0.813509 | 2.469786e-51 | 1.616018e-48 |
| MsG0580029496.01 | MsG0780041506.01 | 0.815078 | 1.111567e-51 | 7.588248e-49 |
| MsG0580029496.01 | MsG0880041846.01 | 0.854926 | 8.886674e-62 | 2.017009e-58 |
| MsG0580029496.01 | MsG0880041896.01 | 0.879055 | 1.701848e-69 | 9.094834e-66 |
| MsG0580029496.01 | MsG0880044041.01 | 0.876129 | 1.784404e-68 | 8.552203e-65 |
| MsG0280006591.01 | MsG0580029496.01 | 0.829188 | 5.918140e-55 | 6.013357e-52 |
| MsG0280008909.01 | MsG0580029496.01 | 0.801658 | 8.114523e-49 | 3.896749e-46 |
| MsG0280009404.01 | MsG0580029496.01 | 0.808363 | 3.212686e-50 | 1.833453e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029496.01.T01 | MTR_5g087480 | 95.184 | 353 | 10 | 3 | 1 | 353 | 1 | 346 | 0.0 | 668 |
| MsG0580029496.01.T01 | MTR_5g087480 | 85.552 | 353 | 7 | 4 | 1 | 353 | 1 | 309 | 0.0 | 585 |
| MsG0580029496.01.T01 | MTR_5g087470 | 34.770 | 348 | 138 | 13 | 1 | 342 | 1 | 265 | 1.03e-34 | 128 |
| MsG0580029496.01.T01 | MTR_5g087450 | 44.545 | 110 | 58 | 2 | 1 | 108 | 3 | 111 | 6.73e-25 | 102 |
| MsG0580029496.01.T01 | MTR_6g478190 | 32.558 | 129 | 79 | 3 | 1 | 126 | 1 | 124 | 2.73e-14 | 70.5 |
| MsG0580029496.01.T01 | MTR_8g046245 | 28.571 | 231 | 125 | 8 | 4 | 225 | 15 | 214 | 1.94e-12 | 68.2 |
| MsG0580029496.01.T01 | MTR_7g086130 | 37.209 | 86 | 52 | 1 | 10 | 93 | 8 | 93 | 3.01e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029496.01.T01 | AT2G27140 | 42.361 | 144 | 67 | 4 | 9 | 144 | 10 | 145 | 2.59e-26 | 105 |
| MsG0580029496.01.T01 | AT5G20970 | 39.844 | 128 | 73 | 3 | 10 | 135 | 7 | 132 | 5.34e-19 | 85.5 |
Find 90 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTCTTCTATAGCTTT+TGG | 0.148334 | 5:-97740848 | None:intergenic |
| ACTTTCTCTTCTTTAGCTTT+TGG | 0.157965 | 5:-97740614 | None:intergenic |
| GCTTTCTCTTCTTTAGCTTT+TGG | 0.158375 | 5:-97740725 | None:intergenic |
| AGCAATAAACTTGGCATCTT+TGG | 0.197304 | 5:-97741041 | None:intergenic |
| TTTGGTCTTGGGGCTTCTTC+TGG | 0.224293 | 5:-97740554 | None:intergenic |
| ATCTTATTGGTCGTGGGACT+TGG | 0.235571 | 5:+97741193 | MsG0580029496.01.T01:CDS |
| TTTGGTCTTGGAGCTTCTTC+TGG | 0.244570 | 5:-97740665 | None:intergenic |
| TTTGGTCTTGGAGCTTCTTC+TGG | 0.244570 | 5:-97740776 | None:intergenic |
| TGCGATGGTTCCTTTGGTCT+TGG | 0.253322 | 5:-97740566 | None:intergenic |
| TATTTATCCCATTCATGATA+TGG | 0.253330 | 5:-97740062 | None:intergenic |
| ACAAAGGCATAAATAATAAA+TGG | 0.280026 | 5:+97739992 | MsG0580029496.01.T01:exon |
| GCGATGGTTCCTTTGGTCTT+GGG | 0.287083 | 5:-97740565 | None:intergenic |
| CTTATCATGCAGGATATAGA+AGG | 0.298323 | 5:+97740321 | MsG0580029496.01.T01:intron |
| TGCGATGGTTCCTTTGGTCT+TGG | 0.307717 | 5:-97740677 | None:intergenic |
| CTTTATTGTAGAAATACATT+TGG | 0.339189 | 5:+97741217 | MsG0580029496.01.T01:CDS |
| GTCTTTCACCTATCAGCCTT+AGG | 0.347092 | 5:-97740379 | None:intergenic |
| TGTGGCGATTCCTTTGGTCT+TGG | 0.352071 | 5:-97740788 | None:intergenic |
| GGATTTGTTGTTGTTTCCTT+AGG | 0.356840 | 5:-97740530 | None:intergenic |
| ATGTGTCATGCTAATCTTAT+TGG | 0.363566 | 5:+97741180 | MsG0580029496.01.T01:CDS |
| TCATAGACACGATCAGCTTC+TGG | 0.364950 | 5:-97740029 | None:intergenic |
| TGTAGATTTCACTCTCTCTA+AGG | 0.366735 | 5:+97741081 | MsG0580029496.01.T01:CDS |
| CTCTAAGGCTCTCTGTAATC+AGG | 0.374231 | 5:+97741096 | MsG0580029496.01.T01:CDS |
| TGGATCGTCTCAGGGAGAAT+TGG | 0.395265 | 5:+97741237 | MsG0580029496.01.T01:CDS |
| AAATACATTTGGATCGTCTC+AGG | 0.407520 | 5:+97741228 | MsG0580029496.01.T01:CDS |
| ACAAAAGGCTGATGAGCAAA+AGG | 0.421804 | 5:+97740808 | MsG0580029496.01.T01:CDS |
| AAACCTGCCCTAAGGCTGAT+AGG | 0.427961 | 5:+97740371 | MsG0580029496.01.T01:CDS |
| GCAAAATGTTGATGAGCAAA+AGG | 0.428473 | 5:+97740697 | MsG0580029496.01.T01:CDS |
| CGATGGTTCCTTTGGTCTTG+GGG | 0.432437 | 5:-97740564 | None:intergenic |
| GCAAAAGGTTGATGAGCAAA+AGG | 0.439413 | 5:+97740586 | MsG0580029496.01.T01:CDS |
| CATGCTAATCTTATTGGTCG+TGG | 0.455442 | 5:+97741186 | MsG0580029496.01.T01:CDS |
| ACTTTGAACCATATCATGAA+TGG | 0.461998 | 5:+97740054 | MsG0580029496.01.T01:CDS |
| GCAGAGAAAGTGAGGACTAA+TGG | 0.462352 | 5:+97740974 | MsG0580029496.01.T01:CDS |
| CATGAATGGGATAAATATGA+TGG | 0.465682 | 5:+97740068 | MsG0580029496.01.T01:CDS |
| TCTTTCACCTATCAGCCTTA+GGG | 0.470253 | 5:-97740378 | None:intergenic |
| TCTTAAGAAGTGGAAGAGAT+TGG | 0.472099 | 5:+97741153 | MsG0580029496.01.T01:CDS |
| GGTCTTGGGGCTTCTTCTGG+TGG | 0.474159 | 5:-97740551 | None:intergenic |
| CGTTTCACTGTTATGCTACC+AGG | 0.481775 | 5:+97740092 | MsG0580029496.01.T01:CDS |
| TGCTAAACTTACTAATCCTA+AGG | 0.484970 | 5:+97740514 | MsG0580029496.01.T01:CDS |
| TCTTATTGGTCGTGGGACTT+GGG | 0.489096 | 5:+97741194 | MsG0580029496.01.T01:CDS |
| CAGGATGAAAATGAAGCCCT+TGG | 0.494161 | 5:+97741115 | MsG0580029496.01.T01:CDS |
| ACCAAAGGAATCGCCACAAA+AGG | 0.496416 | 5:+97740793 | MsG0580029496.01.T01:CDS |
| ACCAAAGGAACCATCGCAAA+AGG | 0.505295 | 5:+97740571 | MsG0580029496.01.T01:CDS |
| TGACCATTTCAATTACTAAG+AGG | 0.508482 | 5:+97739943 | None:intergenic |
| CTTTGAACCATATCATGAAT+GGG | 0.508732 | 5:+97740055 | MsG0580029496.01.T01:CDS |
| ATGCTAATCTTATTGGTCGT+GGG | 0.509173 | 5:+97741187 | MsG0580029496.01.T01:CDS |
| ATTGTATCATTCTCCTTCTG+TGG | 0.509921 | 5:-97740911 | None:intergenic |
| TTATTGCTAGATGCAAAACC+AGG | 0.528675 | 5:+97741056 | MsG0580029496.01.T01:CDS |
| AGAAGAGAAAGTAGCAACAA+AGG | 0.529245 | 5:+97740625 | MsG0580029496.01.T01:CDS |
| TTTGCATCTAGCAATAAACT+TGG | 0.529793 | 5:-97741050 | None:intergenic |
| TCACCTATCAGCCTTAGGGC+AGG | 0.538165 | 5:-97740374 | None:intergenic |
| GTGTCATAATCAGAAGGAAT+GGG | 0.540119 | 5:-97740443 | None:intergenic |
| GCCCTTGGAAATTCGACCAC+AGG | 0.540651 | 5:+97741130 | MsG0580029496.01.T01:CDS |
| GGTCTTGGAGCTTCTTCTGG+TGG | 0.541290 | 5:-97740662 | None:intergenic |
| GGTCTTGGAGCTTCTTCTGG+TGG | 0.541290 | 5:-97740773 | None:intergenic |
| GAGAGTGAAATCTACAAGCC+TGG | 0.545424 | 5:-97741074 | None:intergenic |
| CAAAATGTTGATGAGCAAAA+GGG | 0.546557 | 5:+97740698 | MsG0580029496.01.T01:CDS |
| CAAATATTAGTACATCAGTA+AGG | 0.547214 | 5:-97741283 | None:intergenic |
| CAAAAGGCTGATGAGCAAAA+GGG | 0.548506 | 5:+97740809 | MsG0580029496.01.T01:CDS |
| CAGTGTGACTGCAACATTTG+AGG | 0.549500 | 5:+97740469 | MsG0580029496.01.T01:CDS |
| GTATCATTCTCCTTCTGTGG+TGG | 0.549847 | 5:-97740908 | None:intergenic |
| CGCCATCTGTTCTGAAAGGT+CGG | 0.552867 | 5:-97740401 | None:intergenic |
| CAAAAGGTTGATGAGCAAAA+GGG | 0.552944 | 5:+97740587 | MsG0580029496.01.T01:CDS |
| AGAAGCTAGCATAGACAAAG+TGG | 0.554332 | 5:+97740952 | MsG0580029496.01.T01:CDS |
| AGTGTGACTGCAACATTTGA+GGG | 0.554937 | 5:+97740470 | MsG0580029496.01.T01:CDS |
| GAAATAATAACAGCTCTTCG+AGG | 0.555655 | 5:-97741261 | None:intergenic |
| GACCTGTGGTCGAATTTCCA+AGG | 0.558465 | 5:-97741132 | None:intergenic |
| AGAAGAAGCCCCAAGACCAA+AGG | 0.559386 | 5:+97740556 | MsG0580029496.01.T01:CDS |
| AGAAGAGAAAGCAGAAACAA+AGG | 0.563791 | 5:+97740736 | MsG0580029496.01.T01:CDS |
| ACAAAGTGGCAGAGAAAGTG+AGG | 0.578592 | 5:+97740966 | MsG0580029496.01.T01:CDS |
| CATTCCTTCTGATTATGACA+CGG | 0.581427 | 5:+97740445 | MsG0580029496.01.T01:CDS |
| TGACATCAAAACCTGCCCTA+AGG | 0.581927 | 5:+97740363 | MsG0580029496.01.T01:CDS |
| TTCAAGTAAAAGAGAAACAA+AGG | 0.583189 | 5:+97739976 | MsG0580029496.01.T01:five_prime_UTR |
| CGTGTCATAATCAGAAGGAA+TGG | 0.584263 | 5:-97740444 | None:intergenic |
| TCAAAAGATACCACCACAGA+AGG | 0.585823 | 5:+97740898 | MsG0580029496.01.T01:CDS |
| GACCGACCTTTCAGAACAGA+TGG | 0.586897 | 5:+97740399 | MsG0580029496.01.T01:CDS |
| ATATAGAAGGGATCAAATGA+AGG | 0.587427 | 5:+97740334 | MsG0580029496.01.T01:CDS |
| AATACATTTGGATCGTCTCA+GGG | 0.587906 | 5:+97741229 | MsG0580029496.01.T01:CDS |
| TGAGCAAAAGGGTGCTCAAG+AGG | 0.590093 | 5:+97740820 | MsG0580029496.01.T01:CDS |
| ACCTGTGGTCGAATTTCCAA+GGG | 0.591551 | 5:-97741131 | None:intergenic |
| TTATCATGCAGGATATAGAA+GGG | 0.591949 | 5:+97740322 | MsG0580029496.01.T01:intron |
| CGACCACAGGTCTTAAGAAG+TGG | 0.593414 | 5:+97741143 | MsG0580029496.01.T01:CDS |
| ATGAATGGGATAAATATGAT+GGG | 0.593539 | 5:+97740069 | MsG0580029496.01.T01:CDS |
| GAAAGTGAGGACTAATGGCT+CGG | 0.599305 | 5:+97740979 | MsG0580029496.01.T01:CDS |
| GAGCAAAAGGGTGCTCAAGA+GGG | 0.603253 | 5:+97740821 | MsG0580029496.01.T01:CDS |
| CTTCCACTTCTTAAGACCTG+TGG | 0.604468 | 5:-97741146 | None:intergenic |
| AGAAGAAGCTCCAAGACCAA+AGG | 0.617008 | 5:+97740667 | MsG0580029496.01.T01:CDS |
| ACGACGCCATCTGTTCTGAA+AGG | 0.626270 | 5:-97740405 | None:intergenic |
| AGAAGAAGCTCCAAGACCAA+AGG | 0.639663 | 5:+97740778 | MsG0580029496.01.T01:CDS |
| CTGTCCGTGTCATAATCAGA+AGG | 0.662264 | 5:-97740449 | None:intergenic |
| GTGACTGCAACATTTGAGGG+TGG | 0.744026 | 5:+97740473 | MsG0580029496.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAAAATGTATATTATT+TGG | - | Chr5:97740173-97740192 | None:intergenic | 10.0% |
| !! | GTAAAAAATGTATATTATTT+GGG | - | Chr5:97740172-97740191 | None:intergenic | 10.0% |
| !!! | AATATACATTTTTTACTGTA+AGG | + | Chr5:97740176-97740195 | MsG0580029496.01.T01:intron | 15.0% |
| !!! | AGTATATAGTTTGTATTTTT+TGG | - | Chr5:97740299-97740318 | None:intergenic | 15.0% |
| !! | CTTTATTGTAGAAATACATT+TGG | + | Chr5:97741217-97741236 | MsG0580029496.01.T01:CDS | 20.0% |
| !!! | AAAACAGAGCTTTTTATAAA+TGG | - | Chr5:97740234-97740253 | None:intergenic | 20.0% |
| !!! | ACAAAGGCATAAATAATAAA+TGG | + | Chr5:97739992-97740011 | MsG0580029496.01.T01:exon | 20.0% |
| !!! | ATGTTCAAGTTTTTATATCT+TGG | + | Chr5:97740118-97740137 | MsG0580029496.01.T01:intron | 20.0% |
| !!! | TCTGTTTTTCATTAATTTGA+AGG | + | Chr5:97740246-97740265 | MsG0580029496.01.T01:intron | 20.0% |
| ! | ATGAATGGGATAAATATGAT+GGG | + | Chr5:97740069-97740088 | MsG0580029496.01.T01:CDS | 25.0% |
| ! | CAAATATTAGTACATCAGTA+AGG | - | Chr5:97741286-97741305 | None:intergenic | 25.0% |
| ! | TAAAAACTTGAACATTTACC+TGG | - | Chr5:97740113-97740132 | None:intergenic | 25.0% |
| ! | TATATACTTTCTTATCATGC+AGG | + | Chr5:97740311-97740330 | MsG0580029496.01.T01:intron | 25.0% |
| ! | TATTTATCCCATTCATGATA+TGG | - | Chr5:97740065-97740084 | None:intergenic | 25.0% |
| ! | TTCAAGTAAAAGAGAAACAA+AGG | + | Chr5:97739976-97739995 | MsG0580029496.01.T01:five_prime_UTR | 25.0% |
| ACTTTGAACCATATCATGAA+TGG | + | Chr5:97740054-97740073 | MsG0580029496.01.T01:CDS | 30.0% | |
| ATATAGAAGGGATCAAATGA+AGG | + | Chr5:97740334-97740353 | MsG0580029496.01.T01:CDS | 30.0% | |
| ATGTGTCATGCTAATCTTAT+TGG | + | Chr5:97741180-97741199 | MsG0580029496.01.T01:CDS | 30.0% | |
| CATGAATGGGATAAATATGA+TGG | + | Chr5:97740068-97740087 | MsG0580029496.01.T01:CDS | 30.0% | |
| CTTTGAACCATATCATGAAT+GGG | + | Chr5:97740055-97740074 | MsG0580029496.01.T01:CDS | 30.0% | |
| TGCTAAACTTACTAATCCTA+AGG | + | Chr5:97740514-97740533 | MsG0580029496.01.T01:CDS | 30.0% | |
| TTATCATGCAGGATATAGAA+GGG | + | Chr5:97740322-97740341 | MsG0580029496.01.T01:intron | 30.0% | |
| TTTGCATCTAGCAATAAACT+TGG | - | Chr5:97741053-97741072 | None:intergenic | 30.0% | |
| ! | CAAAATGTTGATGAGCAAAA+GGG | + | Chr5:97740698-97740717 | MsG0580029496.01.T01:CDS | 30.0% |
| ! | CTTTCTCTTCTATAGCTTTT+GGG | - | Chr5:97740850-97740869 | None:intergenic | 30.0% |
| ! | TTTCTCTTCTATAGCTTTTG+GGG | - | Chr5:97740849-97740868 | None:intergenic | 30.0% |
| !!! | ACTTTCTCTTCTTTAGCTTT+TGG | - | Chr5:97740617-97740636 | None:intergenic | 30.0% |
| !!! | CTTTCTCTTCTTTAGCTTTT+GGG | - | Chr5:97740616-97740635 | None:intergenic | 30.0% |
| !!! | TTTCTCTTCTTTAGCTTTTG+GGG | - | Chr5:97740615-97740634 | None:intergenic | 30.0% |
| AAATACATTTGGATCGTCTC+AGG | + | Chr5:97741228-97741247 | MsG0580029496.01.T01:CDS | 35.0% | |
| AATACATTTGGATCGTCTCA+GGG | + | Chr5:97741229-97741248 | MsG0580029496.01.T01:CDS | 35.0% | |
| AGAAGAGAAAGCAGAAACAA+AGG | + | Chr5:97740736-97740755 | MsG0580029496.01.T01:CDS | 35.0% | |
| AGAAGAGAAAGTAGCAACAA+AGG | + | Chr5:97740625-97740644 | MsG0580029496.01.T01:CDS | 35.0% | |
| AGCAATAAACTTGGCATCTT+TGG | - | Chr5:97741044-97741063 | None:intergenic | 35.0% | |
| ATGCTAATCTTATTGGTCGT+GGG | + | Chr5:97741187-97741206 | MsG0580029496.01.T01:CDS | 35.0% | |
| ATTGTATCATTCTCCTTCTG+TGG | - | Chr5:97740914-97740933 | None:intergenic | 35.0% | |
| CATTCCTTCTGATTATGACA+CGG | + | Chr5:97740445-97740464 | MsG0580029496.01.T01:CDS | 35.0% | |
| CTTATCATGCAGGATATAGA+AGG | + | Chr5:97740321-97740340 | MsG0580029496.01.T01:intron | 35.0% | |
| GAAATAATAACAGCTCTTCG+AGG | - | Chr5:97741264-97741283 | None:intergenic | 35.0% | |
| GTGTCATAATCAGAAGGAAT+GGG | - | Chr5:97740446-97740465 | None:intergenic | 35.0% | |
| TCTTAAGAAGTGGAAGAGAT+TGG | + | Chr5:97741153-97741172 | MsG0580029496.01.T01:CDS | 35.0% | |
| TGTAGATTTCACTCTCTCTA+AGG | + | Chr5:97741081-97741100 | MsG0580029496.01.T01:CDS | 35.0% | |
| TTATTGCTAGATGCAAAACC+AGG | + | Chr5:97741056-97741075 | MsG0580029496.01.T01:CDS | 35.0% | |
| ! | GCAAAATGTTGATGAGCAAA+AGG | + | Chr5:97740697-97740716 | MsG0580029496.01.T01:CDS | 35.0% |
| ! | GCTTTCTCTTCTATAGCTTT+TGG | - | Chr5:97740851-97740870 | None:intergenic | 35.0% |
| !! | CAAAAGGTTGATGAGCAAAA+GGG | + | Chr5:97740587-97740606 | MsG0580029496.01.T01:CDS | 35.0% |
| !! | GGATTTGTTGTTGTTTCCTT+AGG | - | Chr5:97740533-97740552 | None:intergenic | 35.0% |
| !!! | AACTTGGCATCTTTGGTTTT+AGG | - | Chr5:97741037-97741056 | None:intergenic | 35.0% |
| !!! | GCTTTCTCTTCTTTAGCTTT+TGG | - | Chr5:97740728-97740747 | None:intergenic | 35.0% |
| ACAAAAGGCTGATGAGCAAA+AGG | + | Chr5:97740808-97740827 | MsG0580029496.01.T01:CDS | 40.0% | |
| AGAAGCTAGCATAGACAAAG+TGG | + | Chr5:97740952-97740971 | MsG0580029496.01.T01:CDS | 40.0% | |
| AGTGTGACTGCAACATTTGA+GGG | + | Chr5:97740470-97740489 | MsG0580029496.01.T01:CDS | 40.0% | |
| CAAAAGGCTGATGAGCAAAA+GGG | + | Chr5:97740809-97740828 | MsG0580029496.01.T01:CDS | 40.0% | |
| CATGCTAATCTTATTGGTCG+TGG | + | Chr5:97741186-97741205 | MsG0580029496.01.T01:CDS | 40.0% | |
| CGTGTCATAATCAGAAGGAA+TGG | - | Chr5:97740447-97740466 | None:intergenic | 40.0% | |
| TCAAAAGATACCACCACAGA+AGG | + | Chr5:97740898-97740917 | MsG0580029496.01.T01:CDS | 40.0% | |
| TCTTTCACCTATCAGCCTTA+GGG | - | Chr5:97740381-97740400 | None:intergenic | 40.0% | |
| ! | ACATTTTGCGATGGTTCCTT+TGG | - | Chr5:97740686-97740705 | None:intergenic | 40.0% |
| ! | AGCTTCTGTTCTGCTCTTTT+CGG | - | Chr5:97740939-97740958 | None:intergenic | 40.0% |
| ! | TGCTCATCAACATTTTGCGA+TGG | - | Chr5:97740695-97740714 | None:intergenic | 40.0% |
| ! | TTTTGCTCATCAGCCTTTTG+TGG | - | Chr5:97740809-97740828 | None:intergenic | 40.0% |
| !! | GCAAAAGGTTGATGAGCAAA+AGG | + | Chr5:97740586-97740605 | MsG0580029496.01.T01:CDS | 40.0% |
| ACAAAGTGGCAGAGAAAGTG+AGG | + | Chr5:97740966-97740985 | MsG0580029496.01.T01:CDS | 45.0% | |
| ACCAAAGGAACCATCGCAAA+AGG | + | Chr5:97740571-97740590 | MsG0580029496.01.T01:CDS | 45.0% | |
| ACCAAAGGAATCGCCACAAA+AGG | + | Chr5:97740793-97740812 | MsG0580029496.01.T01:CDS | 45.0% | |
| ACCTGTGGTCGAATTTCCAA+GGG | - | Chr5:97741134-97741153 | None:intergenic | 45.0% | |
| AGAAGAAGCTCCAAGACCAA+AGG | + | Chr5:97740667-97740686 | MsG0580029496.01.T01:CDS | 45.0% | |
| ATCTTATTGGTCGTGGGACT+TGG | + | Chr5:97741193-97741212 | MsG0580029496.01.T01:CDS | 45.0% | |
| CAGGATGAAAATGAAGCCCT+TGG | + | Chr5:97741115-97741134 | MsG0580029496.01.T01:CDS | 45.0% | |
| CAGTGTGACTGCAACATTTG+AGG | + | Chr5:97740469-97740488 | MsG0580029496.01.T01:CDS | 45.0% | |
| CGTTTCACTGTTATGCTACC+AGG | + | Chr5:97740092-97740111 | MsG0580029496.01.T01:CDS | 45.0% | |
| CTGTCCGTGTCATAATCAGA+AGG | - | Chr5:97740452-97740471 | None:intergenic | 45.0% | |
| CTTCCACTTCTTAAGACCTG+TGG | - | Chr5:97741149-97741168 | None:intergenic | 45.0% | |
| GAAAGTGAGGACTAATGGCT+CGG | + | Chr5:97740979-97740998 | MsG0580029496.01.T01:CDS | 45.0% | |
| GAGAGTGAAATCTACAAGCC+TGG | - | Chr5:97741077-97741096 | None:intergenic | 45.0% | |
| GCAGAGAAAGTGAGGACTAA+TGG | + | Chr5:97740974-97740993 | MsG0580029496.01.T01:CDS | 45.0% | |
| GTATCATTCTCCTTCTGTGG+TGG | - | Chr5:97740911-97740930 | None:intergenic | 45.0% | |
| GTCTTTCACCTATCAGCCTT+AGG | - | Chr5:97740382-97740401 | None:intergenic | 45.0% | |
| TCATAGACACGATCAGCTTC+TGG | - | Chr5:97740032-97740051 | None:intergenic | 45.0% | |
| TCTTATTGGTCGTGGGACTT+GGG | + | Chr5:97741194-97741213 | MsG0580029496.01.T01:CDS | 45.0% | |
| TGACATCAAAACCTGCCCTA+AGG | + | Chr5:97740363-97740382 | MsG0580029496.01.T01:CDS | 45.0% | |
| ! | ACCTTTTGCGATGGTTCCTT+TGG | - | Chr5:97740575-97740594 | None:intergenic | 45.0% |
| ! | TGCTCATCAACCTTTTGCGA+TGG | - | Chr5:97740584-97740603 | None:intergenic | 45.0% |
| !! | CTCTAAGGCTCTCTGTAATC+AGG | + | Chr5:97741096-97741115 | MsG0580029496.01.T01:CDS | 45.0% |
| !! | TTTGGTCTTGGAGCTTCTTC+TGG | - | Chr5:97740668-97740687 | None:intergenic | 45.0% |
| AAACCTGCCCTAAGGCTGAT+AGG | + | Chr5:97740371-97740390 | MsG0580029496.01.T01:CDS | 50.0% | |
| AGAAGAAGCCCCAAGACCAA+AGG | + | Chr5:97740556-97740575 | MsG0580029496.01.T01:CDS | 50.0% | |
| CGACCACAGGTCTTAAGAAG+TGG | + | Chr5:97741143-97741162 | MsG0580029496.01.T01:CDS | 50.0% | |
| GACCGACCTTTCAGAACAGA+TGG | + | Chr5:97740399-97740418 | MsG0580029496.01.T01:CDS | 50.0% | |
| GACCTGTGGTCGAATTTCCA+AGG | - | Chr5:97741135-97741154 | None:intergenic | 50.0% | |
| GTGACTGCAACATTTGAGGG+TGG | + | Chr5:97740473-97740492 | MsG0580029496.01.T01:CDS | 50.0% | |
| TGCGATGGTTCCTTTGGTCT+TGG | - | Chr5:97740569-97740588 | None:intergenic | 50.0% | |
| TGGATCGTCTCAGGGAGAAT+TGG | + | Chr5:97741237-97741256 | MsG0580029496.01.T01:CDS | 50.0% | |
| TGTGGCGATTCCTTTGGTCT+TGG | - | Chr5:97740791-97740810 | None:intergenic | 50.0% | |
| ! | ACGACGCCATCTGTTCTGAA+AGG | - | Chr5:97740408-97740427 | None:intergenic | 50.0% |
| ! | GCCTTTTGTGGCGATTCCTT+TGG | - | Chr5:97740797-97740816 | None:intergenic | 50.0% |
| ! | GCGATGGTTCCTTTGGTCTT+GGG | - | Chr5:97740568-97740587 | None:intergenic | 50.0% |
| !! | CGATGGTTCCTTTGGTCTTG+GGG | - | Chr5:97740567-97740586 | None:intergenic | 50.0% |
| !! | CGCCATCTGTTCTGAAAGGT+CGG | - | Chr5:97740404-97740423 | None:intergenic | 50.0% |
| !! | GAGCAAAAGGGTGCTCAAGA+GGG | + | Chr5:97740821-97740840 | MsG0580029496.01.T01:CDS | 50.0% |
| !! | TGAGCAAAAGGGTGCTCAAG+AGG | + | Chr5:97740820-97740839 | MsG0580029496.01.T01:CDS | 50.0% |
| !! | TTTGGTCTTGGGGCTTCTTC+TGG | - | Chr5:97740557-97740576 | None:intergenic | 50.0% |
| GCCCTTGGAAATTCGACCAC+AGG | + | Chr5:97741130-97741149 | MsG0580029496.01.T01:CDS | 55.0% | |
| GGTCTTGGAGCTTCTTCTGG+TGG | - | Chr5:97740665-97740684 | None:intergenic | 55.0% | |
| TCACCTATCAGCCTTAGGGC+AGG | - | Chr5:97740377-97740396 | None:intergenic | 55.0% | |
| GGTCTTGGGGCTTCTTCTGG+TGG | - | Chr5:97740554-97740573 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 97739953 | 97741438 | 97739953 | ID=MsG0580029496.01;Name=MsG0580029496.01 |
| Chr5 | mRNA | 97739953 | 97741438 | 97739953 | ID=MsG0580029496.01.T01;Parent=MsG0580029496.01;Name=MsG0580029496.01.T01;_AED=0.18;_eAED=0.18;_QI=58|1|1|1|1|1|2|147|353 |
| Chr5 | exon | 97739953 | 97740113 | 97739953 | ID=MsG0580029496.01.T01:exon:25172;Parent=MsG0580029496.01.T01 |
| Chr5 | exon | 97740333 | 97741438 | 97740333 | ID=MsG0580029496.01.T01:exon:25173;Parent=MsG0580029496.01.T01 |
| Chr5 | five_prime_UTR | 97739953 | 97740010 | 97739953 | ID=MsG0580029496.01.T01:five_prime_utr;Parent=MsG0580029496.01.T01 |
| Chr5 | CDS | 97740011 | 97740113 | 97740011 | ID=MsG0580029496.01.T01:cds;Parent=MsG0580029496.01.T01 |
| Chr5 | CDS | 97740333 | 97741291 | 97740333 | ID=MsG0580029496.01.T01:cds;Parent=MsG0580029496.01.T01 |
| Chr5 | three_prime_UTR | 97741292 | 97741438 | 97741292 | ID=MsG0580029496.01.T01:three_prime_utr;Parent=MsG0580029496.01.T01 |
| Gene Sequence |
| Protein sequence |
