AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008909.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008909.01.T01 MTR_2g460800 84.899 596 23 5 1 549 1 576 0.0 931
MsG0280008909.01.T01 MTR_2g460800 85.744 484 24 4 1 459 1 464 0.0 743
MsG0280008909.01.T01 MTR_2g090620 29.915 234 116 5 346 532 137 369 9.20e-28 115
MsG0280008909.01.T01 MTR_4g078740 29.435 248 122 7 311 509 25 268 6.83e-25 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008909.01.T01 AT5G58000 36.762 593 227 24 6 512 17 547 1.06e-78 259
MsG0280008909.01.T01 AT5G58000 48.175 274 87 7 289 512 173 441 1.75e-76 250
MsG0280008909.01.T01 AT2G20590 29.956 227 112 5 330 509 136 362 1.70e-25 109
MsG0280008909.01.T01 AT2G20590 31.100 209 98 4 350 512 170 378 4.61e-25 108
MsG0280008909.01.T01 AT4G28430 28.972 214 105 3 346 512 193 406 1.40e-17 85.9
MsG0280008909.01.T01 AT2G20590 30.612 147 78 3 350 472 170 316 6.18e-15 76.6

Find 127 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGGTTTGGAGAAATTT+TGG 0.157130 2:+41416946 None:intergenic
CTAGACTCTGCAACTTGTTT+TGG 0.174874 2:+41416778 None:intergenic
ATATTCATTTGCTTTCATTT+TGG 0.194470 2:-41412905 MsG0280008909.01.T01:three_prime_UTR
TGAAAATTTCTTACTTGAAT+TGG 0.195478 2:+41416929 None:intergenic
TTTCCTTTGGAAATCTGAAT+TGG 0.240670 2:+41417710 None:intergenic
CTTATCTTTCTTGATTGAAT+TGG 0.242851 2:+41417626 None:intergenic
CTACTGCGTTCTTCTTCTTT+TGG 0.250422 2:+41416813 None:intergenic
GATATGGCCCATTTGTCTTT+AGG 0.252913 2:-41417969 MsG0280008909.01.T01:five_prime_UTR
GTGGAAGTTTCATAACTATT+TGG 0.254654 2:-41415472 MsG0280008909.01.T01:CDS
TTGTGTTGTTTCTGTCTAAC+TGG 0.259168 2:+41413209 None:intergenic
TTTCTTCTGTTCTGCTTCAT+TGG 0.263708 2:+41417076 None:intergenic
TTTCTTCTGTTCTGCTTCAT+TGG 0.263708 2:+41417106 None:intergenic
TCCATTAACCACTTATGATA+TGG 0.269860 2:-41417985 MsG0280008909.01.T01:five_prime_UTR
GACAAGAATTCATTCAAATA+AGG 0.278389 2:+41415662 None:intergenic
CAAGATCAGCATTTGTGTTT+GGG 0.280922 2:-41416640 MsG0280008909.01.T01:CDS
ATGAAGAGTGATCAAGTTAA+AGG 0.286954 2:-41417848 MsG0280008909.01.T01:CDS
AGTTAATAACAAATCCATTA+AGG 0.289603 2:-41413001 MsG0280008909.01.T01:three_prime_UTR
GCCATATCATAAGTGGTTAA+TGG 0.298531 2:+41417984 None:intergenic
TCATTAACATTCTTCTTGAT+TGG 0.304191 2:+41417542 None:intergenic
TTATCTTTCTTGATTGAATT+GGG 0.312571 2:+41417627 None:intergenic
AAAGAATGAATTTGATGAAT+TGG 0.314502 2:-41417462 MsG0280008909.01.T01:CDS
CATCTGTTGTTGCTCGCATT+TGG 0.323883 2:-41413512 MsG0280008909.01.T01:CDS
TGCAATTTGGATGCTGAAAT+TGG 0.325517 2:-41415690 MsG0280008909.01.T01:CDS
TCAAGATCAGCATTTGTGTT+TGG 0.329810 2:-41416641 MsG0280008909.01.T01:CDS
GAAAATTTCTTACTTGAATT+GGG 0.330039 2:+41416930 None:intergenic
TTTCTTACTTGAATTGGGTT+TGG 0.336832 2:+41416935 None:intergenic
GAATCCTTTCTTGACTTTGT+TGG 0.339840 2:+41413175 None:intergenic
TAAGAGAACAAGATGCAATT+TGG 0.344866 2:-41415703 MsG0280008909.01.T01:CDS
CCAACATGAACCACTGATTC+AGG 0.347212 2:+41417332 None:intergenic
TCGAAAAGAACACTTTGATA+TGG 0.351204 2:+41413074 None:intergenic
ATGAAATGGAAGAGTCTTCT+TGG 0.353059 2:+41417658 None:intergenic
TCTAAAATCCTAAAGACAAA+TGG 0.357727 2:+41417961 None:intergenic
ATACTATCAACAACACTATA+TGG 0.360600 2:-41413288 MsG0280008909.01.T01:CDS
TAGGCATATTCGGTCTAGTA+TGG 0.366112 2:-41413542 MsG0280008909.01.T01:CDS
ACTACAAGAGGAACAGAAAC+TGG 0.385936 2:+41417008 None:intergenic
ATCTGTTGTTGCTCGCATTT+GGG 0.390664 2:-41413511 MsG0280008909.01.T01:CDS
AGATTGAGAAGAACCTCAAT+TGG 0.400011 2:-41417758 MsG0280008909.01.T01:CDS
TCAGCATTTGTGTTTGGGAT+TGG 0.406573 2:-41416635 MsG0280008909.01.T01:CDS
TTCCTTTGGAAATCTGAATT+GGG 0.411037 2:+41417711 None:intergenic
TTTCATAACTATTTGGAAGA+TGG 0.416263 2:-41415465 MsG0280008909.01.T01:CDS
TGCAGTGTTTGTACTATTTG+TGG 0.423837 2:-41413318 MsG0280008909.01.T01:intron
GAATTTGATGAATTGGATGA+TGG 0.435863 2:-41417455 MsG0280008909.01.T01:CDS
AGAAGAGGTGTGGTTGCTGC+AGG 0.437201 2:-41417890 MsG0280008909.01.T01:CDS
CATTAAGGTTCAATAGCAAA+AGG 0.437244 2:-41412986 MsG0280008909.01.T01:three_prime_UTR
TTGATTCACAGTAACAACTT+TGG 0.439920 2:+41417205 None:intergenic
ACTATATGGTGAGGGATGAA+TGG 0.441893 2:-41413274 MsG0280008909.01.T01:CDS
GCTGTGGCTCTAGGCATATT+CGG 0.445263 2:-41413552 MsG0280008909.01.T01:CDS
ATTGGGCTTCTTGTATGAAA+TGG 0.447927 2:+41417644 None:intergenic
TTTGTGATGAAATCTCATAT+TGG 0.448436 2:+41417043 None:intergenic
TTCGTCGATTTCGGGATGCA+TGG 0.451129 2:-41413596 MsG0280008909.01.T01:CDS
AAGGGTGGTGGTGAAGCTGC+AGG 0.452129 2:-41417590 MsG0280008909.01.T01:CDS
GAATGGGTAGAAGATGAAAC+AGG 0.452228 2:-41413257 MsG0280008909.01.T01:CDS
ATTACCTTCATTGTGGTGCC+AGG 0.462054 2:+41415611 None:intergenic
GTAACAACTTTGGATTCTGC+TGG 0.465322 2:+41417215 None:intergenic
CTAAAATCCTAAAGACAAAT+GGG 0.470864 2:+41417962 None:intergenic
ATTTGGAAGATGGCTAAAAT+CGG 0.474250 2:-41415455 MsG0280008909.01.T01:intron
GTTGTTGCTCGCATTTGGGC+AGG 0.478972 2:-41413507 MsG0280008909.01.T01:intron
TTAATGATTCAATTGAATTG+AGG 0.479489 2:-41417526 MsG0280008909.01.T01:CDS
TAGAAGCAATGGAGGTTGGT+GGG 0.485083 2:+41418022 None:intergenic
ATAAGTGGTTAATGGATAAG+AGG 0.487292 2:+41417992 None:intergenic
TATGCATAGCTATAGTTCTC+AGG 0.490438 2:-41413040 MsG0280008909.01.T01:three_prime_UTR
AAGTCAAGAAAGGATTCTAA+AGG 0.492545 2:-41413169 MsG0280008909.01.T01:exon
AGCAAAAGGGAATAATAGCT+TGG 0.504414 2:-41412972 MsG0280008909.01.T01:three_prime_UTR
CTATATGGTGAGGGATGAAT+GGG 0.505205 2:-41413273 MsG0280008909.01.T01:CDS
GAGGCTTGAAGTAGAAGCAA+TGG 0.507360 2:+41418011 None:intergenic
AACAATCCCCTACAATCAAA+AGG 0.507778 2:-41416983 MsG0280008909.01.T01:CDS
TTAAATTGGTGAATGATCAA+TGG 0.508935 2:-41417918 MsG0280008909.01.T01:exon
ATGCAAAGGATATCAATTTG+AGG 0.510644 2:-41416586 MsG0280008909.01.T01:intron
TCGTCGATTTCGGGATGCAT+GGG 0.512384 2:-41413595 MsG0280008909.01.T01:CDS
AGTCAAGAAAGGATTCTAAA+GGG 0.512492 2:-41413168 MsG0280008909.01.T01:exon
GAGGAAGACGAAATCTGAGT+TGG 0.514593 2:-41417507 MsG0280008909.01.T01:CDS
GTGAAGCTGCAGGGAAATTG+AGG 0.515270 2:-41417580 MsG0280008909.01.T01:CDS
AAAGAAGAACAAGAACAAGA+AGG 0.522290 2:-41417800 MsG0280008909.01.T01:CDS
GATTGAGAAGAACCTCAATT+GGG 0.529558 2:-41417757 MsG0280008909.01.T01:CDS
CAAATGGGCCATATCATAAG+TGG 0.539279 2:+41417977 None:intergenic
ATTAAGGTTCAATAGCAAAA+GGG 0.542239 2:-41412985 MsG0280008909.01.T01:three_prime_UTR
AATTTGATGAATTGGATGAT+GGG 0.543422 2:-41417454 MsG0280008909.01.T01:CDS
GGGGATTGTTTCACTACAAG+AGG 0.543889 2:+41416996 None:intergenic
TCAAAATTCACCTGAATCAG+TGG 0.544044 2:-41417342 MsG0280008909.01.T01:CDS
GCTACCAACAAAGTCAAGAA+AGG 0.545347 2:-41413179 MsG0280008909.01.T01:CDS
GAAGTAGAAGCAATGGAGGT+TGG 0.551783 2:+41418018 None:intergenic
AGCCCAATTCAGATTTCCAA+AGG 0.554864 2:-41417713 MsG0280008909.01.T01:CDS
GAACAAGAAGGAGGAAATGT+TGG 0.555049 2:-41417788 MsG0280008909.01.T01:CDS
GTAGAAGCAATGGAGGTTGG+TGG 0.555238 2:+41418021 None:intergenic
AGATCCTGGCACCACAATGA+AGG 0.555506 2:-41415615 MsG0280008909.01.T01:intron
GAATGAAAGCTTTGATGTGA+AGG 0.555982 2:-41417249 MsG0280008909.01.T01:CDS
GATAAGATCTGATATGCAGA+AGG 0.555989 2:-41417609 MsG0280008909.01.T01:CDS
CAAAACAAGTTGCAGAGTCT+AGG 0.557021 2:-41416777 MsG0280008909.01.T01:intron
TGGTTGCTGCAGGGTCAGTG+TGG 0.558063 2:-41417880 MsG0280008909.01.T01:CDS
GAATCAACAAGAAAATGATA+AGG 0.558387 2:-41417189 MsG0280008909.01.T01:CDS
TTGGTTCCATCAGAAATGCA+TGG 0.559390 2:+41417677 None:intergenic
AGTCTCATCTTCTTATGCAA+AGG 0.559905 2:-41416600 MsG0280008909.01.T01:CDS
TCTCTTTGAAGACCCAATTG+AGG 0.562740 2:+41417745 None:intergenic
GAGGAACCATGCATTTCTGA+TGG 0.565807 2:-41417683 MsG0280008909.01.T01:CDS
TGAAGCAGAACAGAAGAAAG+TGG 0.569576 2:-41417102 MsG0280008909.01.T01:CDS
TGAGAAAGATGAAAATGTTG+AGG 0.571155 2:-41417414 MsG0280008909.01.T01:CDS
TTAAATAATTACCTTCATTG+TGG 0.571660 2:+41415604 None:intergenic
AAGAGTGATCAAGTTAAAGG+TGG 0.572772 2:-41417845 MsG0280008909.01.T01:CDS
TGAAGCAGAACAGAAGAAAG+TGG 0.579793 2:-41417072 MsG0280008909.01.T01:CDS
GAAGAACAAGAACAAGAAGG+AGG 0.579849 2:-41417797 MsG0280008909.01.T01:CDS
TGAGGAAATTGAAATTGAGA+TGG 0.583763 2:-41417273 MsG0280008909.01.T01:CDS
TGGTGAGGTTGAAGATGATG+AGG 0.590184 2:-41417291 MsG0280008909.01.T01:CDS
AGAATTCATTCAAATAAGGT+AGG 0.591737 2:+41415666 None:intergenic
GGTTGCTGCAGGGTCAGTGT+GGG 0.592884 2:-41417879 MsG0280008909.01.T01:CDS
CAACAGTGGATTTAATAATG+TGG 0.598108 2:-41416673 MsG0280008909.01.T01:intron
GAGTAATTCAAAAGCAAATG+TGG 0.600295 2:+41413112 None:intergenic
CCTGAATCAGTGGTTCATGT+TGG 0.600898 2:-41417332 MsG0280008909.01.T01:CDS
AAACAGGATGTGATGAAGCA+TGG 0.601103 2:-41413241 MsG0280008909.01.T01:CDS
GAATCAGTGGTTCATGTTGG+TGG 0.602680 2:-41417329 MsG0280008909.01.T01:CDS
ATCAACAACACTATATGGTG+AGG 0.602777 2:-41413283 MsG0280008909.01.T01:CDS
CAAGAAGGAGGAAATGTTGG+TGG 0.603269 2:-41417785 MsG0280008909.01.T01:CDS
GATATCAAGCAATGTTGATG+TGG 0.605869 2:-41417366 MsG0280008909.01.T01:CDS
GCTTGAAGTAGAAGCAATGG+AGG 0.611183 2:+41418014 None:intergenic
AACAGGATGTGATGAAGCAT+GGG 0.612508 2:-41413240 MsG0280008909.01.T01:CDS
AAGGATTCTAAAGGGATGCA+TGG 0.617479 2:-41413160 MsG0280008909.01.T01:exon
TGATCAATGGATAAAAGAAG+AGG 0.617810 2:-41417905 MsG0280008909.01.T01:exon
TCTGATATGCAGAAGGGTGG+TGG 0.626002 2:-41417602 MsG0280008909.01.T01:CDS
GAAGAGGTGTGGTTGCTGCA+GGG 0.627693 2:-41417889 MsG0280008909.01.T01:CDS
AGGGTGGTGGTGAAGCTGCA+GGG 0.632751 2:-41417589 MsG0280008909.01.T01:CDS
AGATCTGATATGCAGAAGGG+TGG 0.640604 2:-41417605 MsG0280008909.01.T01:CDS
TCAACAACACTATATGGTGA+GGG 0.642871 2:-41413282 MsG0280008909.01.T01:CDS
AATGGATAAAAGAAGAGGTG+TGG 0.650250 2:-41417900 MsG0280008909.01.T01:CDS
GGTGGTGATTCTGAATCAGA+TGG 0.664264 2:-41417311 MsG0280008909.01.T01:CDS
TGATTCTGAATCAGATGGTG+AGG 0.669622 2:-41417306 MsG0280008909.01.T01:CDS
ATAAGATCTGATATGCAGAA+GGG 0.678384 2:-41417608 MsG0280008909.01.T01:CDS
TGGTTACTATAGCTAGCTAG+TGG 0.681225 2:-41413137 MsG0280008909.01.T01:three_prime_UTR
GATTCTAAAGGGATGCATGG+TGG 0.692780 2:-41413157 MsG0280008909.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTGAAAATGATTATAT+AGG - Chr2:41417117-41417136 MsG0280008909.01.T01:CDS 10.0%
!!! TATTAAATAATTTCTTCTTT+TGG - Chr2:41414590-41414609 MsG0280008909.01.T01:intron 10.0%
!!! TTATTATTATTTCTAGTTTT+AGG - Chr2:41416305-41416324 MsG0280008909.01.T01:intron 10.0%
!!! TTCAGTTTTTTTTTTTTTAT+GGG - Chr2:41415131-41415150 MsG0280008909.01.T01:intron 10.0%
!!! TTTCAGTTTTTTTTTTTTTA+TGG - Chr2:41415130-41415149 MsG0280008909.01.T01:intron 10.0%
!! AAAAAGTAAAGTAGTTAAAT+TGG - Chr2:41412965-41412984 MsG0280008909.01.T01:intron 15.0%
!! TAATTAATAAATACATCACA+TGG - Chr2:41416709-41416728 MsG0280008909.01.T01:intron 15.0%
!!! ATACATATTTTTCATTTTCA+GGG - Chr2:41416396-41416415 MsG0280008909.01.T01:intron 15.0%
!!! CGTTCATATTATTTATTTTA+GGG - Chr2:41414462-41414481 MsG0280008909.01.T01:intron 15.0%
!!! TACTTTTAAATGATTTTCAA+TGG - Chr2:41414857-41414876 MsG0280008909.01.T01:intron 15.0%
!!! TATACATATTTTTCATTTTC+AGG - Chr2:41416395-41416414 MsG0280008909.01.T01:intron 15.0%
!!! TCGTTCATATTATTTATTTT+AGG - Chr2:41414461-41414480 MsG0280008909.01.T01:intron 15.0%
!!! TTTTTTTATTCTAAGACATT+TGG - Chr2:41415069-41415088 MsG0280008909.01.T01:intron 15.0%
!! AAAGAATGAATTTGATGAAT+TGG - Chr2:41413435-41413454 MsG0280008909.01.T01:intron 20.0%
!! AATATCACGTGTATAAAAAA+TGG + Chr2:41416130-41416149 None:intergenic 20.0%
!! AGTTAATAACAAATCCATTA+AGG - Chr2:41417896-41417915 MsG0280008909.01.T01:CDS 20.0%
!! GAAAATTTCTTACTTGAATT+GGG + Chr2:41413970-41413989 None:intergenic 20.0%
!! TCATAATAATCGTAACATAA+TGG - Chr2:41416883-41416902 MsG0280008909.01.T01:intron 20.0%
!! TGAAAATTTCTTACTTGAAT+TGG + Chr2:41413971-41413990 None:intergenic 20.0%
!! TTAAATAATTACCTTCATTG+TGG + Chr2:41415296-41415315 None:intergenic 20.0%
!! TTAATGATTCAATTGAATTG+AGG - Chr2:41413371-41413390 MsG0280008909.01.T01:intron 20.0%
!! TTATCTTTCTTGATTGAATT+GGG + Chr2:41413273-41413292 None:intergenic 20.0%
!! TTATTATTACCTGCAAATTA+AGG + Chr2:41414805-41414824 None:intergenic 20.0%
!! TTGCGTATAAAATAAAAGTT+AGG + Chr2:41417429-41417448 None:intergenic 20.0%
!!! ATATTCATTTGCTTTCATTT+TGG - Chr2:41417992-41418011 MsG0280008909.01.T01:five_prime_UTR 20.0%
!!! ATTATTTCTAGTTTTAGGTT+TGG - Chr2:41416310-41416329 MsG0280008909.01.T01:intron 20.0%
!!! ATTGTTTTACATTGACATAT+TGG + Chr2:41417147-41417166 None:intergenic 20.0%
!!! CAACATTAAATTTGTTTTTG+TGG - Chr2:41415814-41415833 MsG0280008909.01.T01:intron 20.0%
!!! CAGTCAATTTTGTATTTTTT+GGG - Chr2:41413999-41414018 MsG0280008909.01.T01:intron 20.0%
!!! GATATGTTAAAGCAAATTTT+TGG - Chr2:41417277-41417296 MsG0280008909.01.T01:CDS 20.0%
!!! TAAAATCGGTAAGTTTTTAA+AGG - Chr2:41415456-41415475 MsG0280008909.01.T01:CDS 20.0%
!!! TACATATCTACTCTTTTATA+CGG - Chr2:41415749-41415768 MsG0280008909.01.T01:intron 20.0%
!!! TCAGTCAATTTTGTATTTTT+TGG - Chr2:41413998-41414017 MsG0280008909.01.T01:intron 20.0%
!!! TCTTTTATTTTGGTAAACTA+GGG - Chr2:41416845-41416864 MsG0280008909.01.T01:intron 20.0%
!!! TGTGTTTTACTAATCTTTTA+AGG - Chr2:41414054-41414073 MsG0280008909.01.T01:intron 20.0%
!!! TTGTGGATTTTTTTTTTTTG+AGG - Chr2:41415831-41415850 MsG0280008909.01.T01:intron 20.0%
!!! TTTTTTTTTTTATGGGTTCA+GGG - Chr2:41415138-41415157 MsG0280008909.01.T01:intron 20.0%
!!! TTTTTTTTTTTTATGGGTTC+AGG - Chr2:41415137-41415156 MsG0280008909.01.T01:intron 20.0%
! AATTTGATGAATTGGATGAT+GGG - Chr2:41413443-41413462 MsG0280008909.01.T01:intron 25.0%
! AGAATTCATTCAAATAAGGT+AGG + Chr2:41415234-41415253 None:intergenic 25.0%
! ATACTATCAACAACACTATA+TGG - Chr2:41417609-41417628 MsG0280008909.01.T01:CDS 25.0%
! ATAGTGTAGAATAGATTAGA+CGG - Chr2:41415675-41415694 MsG0280008909.01.T01:CDS 25.0%
! ATTAAGGTTCAATAGCAAAA+GGG - Chr2:41417912-41417931 MsG0280008909.01.T01:exon 25.0%
! CACAAAAAAAAACTAATGTG+TGG - Chr2:41417540-41417559 MsG0280008909.01.T01:CDS 25.0%
! CTAAAATCCTAAAGACAAAT+GGG + Chr2:41412938-41412957 None:intergenic 25.0%
! CTTATCTTTCTTGATTGAAT+TGG + Chr2:41413274-41413293 None:intergenic 25.0%
! GAATCAACAAGAAAATGATA+AGG - Chr2:41413708-41413727 MsG0280008909.01.T01:intron 25.0%
! GACAAGAATTCATTCAAATA+AGG + Chr2:41415238-41415257 None:intergenic 25.0%
! GTAAAAAGAACATCAAAATC+AGG + Chr2:41414680-41414699 None:intergenic 25.0%
! TAAGGACAAATTAAATAGTG+AGG - Chr2:41415102-41415121 MsG0280008909.01.T01:intron 25.0%
! TAGTAATAATGTAGATCTGA+CGG - Chr2:41416191-41416210 MsG0280008909.01.T01:intron 25.0%
! TCAACAAAACTCAATGTATT+TGG + Chr2:41414434-41414453 None:intergenic 25.0%
! TCATTAACATTCTTCTTGAT+TGG + Chr2:41413358-41413377 None:intergenic 25.0%
! TCTACATTATTACTATGCAT+TGG + Chr2:41416186-41416205 None:intergenic 25.0%
! TTAAATTGGTGAATGATCAA+TGG - Chr2:41412979-41412998 MsG0280008909.01.T01:three_prime_UTR 25.0%
! TTTCATAACTATTTGGAAGA+TGG - Chr2:41415432-41415451 MsG0280008909.01.T01:intron 25.0%
! TTTGTGATGAAATCTCATAT+TGG + Chr2:41413857-41413876 None:intergenic 25.0%
!! ACATTTGGAGTTTCTATTTA+AGG - Chr2:41415084-41415103 MsG0280008909.01.T01:intron 25.0%
!! TCTAAAATCCTAAAGACAAA+TGG + Chr2:41412939-41412958 None:intergenic 25.0%
!! TGATGTTCTTTTTACTGTTT+CGG - Chr2:41414685-41414704 MsG0280008909.01.T01:intron 25.0%
!! TTCAAAACAATCTTCTTTTC+TGG + Chr2:41413748-41413767 None:intergenic 25.0%
!! TTTTGGATAATGCTTGAATT+TGG - Chr2:41418009-41418028 MsG0280008909.01.T01:five_prime_UTR 25.0%
!!! ACATTAGTTTTTTTTTGTGG+TGG + Chr2:41417539-41417558 None:intergenic 25.0%
!!! ACTAGTTAAGGCTTTTAAAA+GGG - Chr2:41414509-41414528 MsG0280008909.01.T01:intron 25.0%
!!! CAAGACTCTTTATTTTACTA+TGG - Chr2:41414647-41414666 MsG0280008909.01.T01:intron 25.0%
!!! CACACACATTTTCTAAAATT+AGG + Chr2:41414038-41414057 None:intergenic 25.0%
!!! CACACATTAGTTTTTTTTTG+TGG + Chr2:41417542-41417561 None:intergenic 25.0%
!!! GTCTTTTATTTTGGTAAACT+AGG - Chr2:41416844-41416863 MsG0280008909.01.T01:intron 25.0%
!!! GTGACAATTGTCTTTTATTT+TGG - Chr2:41416835-41416854 MsG0280008909.01.T01:intron 25.0%
!!! TTGAATTCCTTTTGATTGTA+GGG + Chr2:41413924-41413943 None:intergenic 25.0%
!!! TTTGAATTCCTTTTGATTGT+AGG + Chr2:41413925-41413944 None:intergenic 25.0%
!!! TTTTTGAGGAATTGTTTTTC+TGG - Chr2:41415845-41415864 MsG0280008909.01.T01:intron 25.0%
!!! TTTTTTTTTTATGGGTTCAG+GGG - Chr2:41415139-41415158 MsG0280008909.01.T01:intron 25.0%
AAAGAAGAACAAGAACAAGA+AGG - Chr2:41413097-41413116 MsG0280008909.01.T01:three_prime_UTR 30.0%
AAATATAAGCATGCAACGAT+CGG + Chr2:41415728-41415747 None:intergenic 30.0%
AACCTATACTCATCAAAATC+AGG + Chr2:41415654-41415673 None:intergenic 30.0%
AACTTACTACGTACAAATAC+AGG + Chr2:41415043-41415062 None:intergenic 30.0%
AAGTCAAGAAAGGATTCTAA+AGG - Chr2:41417728-41417747 MsG0280008909.01.T01:CDS 30.0%
ACACATTAATTACGTCATGA+AGG + Chr2:41414991-41415010 None:intergenic 30.0%
ACATTAATTACGTCATGAAG+GGG + Chr2:41414989-41415008 None:intergenic 30.0%
ACTAACTCTAGTACTATTTC+AGG - Chr2:41415555-41415574 MsG0280008909.01.T01:intron 30.0%
AGTAATAATGTAGATCTGAC+GGG - Chr2:41416192-41416211 MsG0280008909.01.T01:intron 30.0%
AGTCAAGAAAGGATTCTAAA+GGG - Chr2:41417729-41417748 MsG0280008909.01.T01:CDS 30.0%
ATAAGATCTGATATGCAGAA+GGG - Chr2:41413289-41413308 MsG0280008909.01.T01:CDS 30.0%
ATACGACAAAGATATAAGGA+AGG - Chr2:41416096-41416115 MsG0280008909.01.T01:intron 30.0%
ATGAAGAGTGATCAAGTTAA+AGG - Chr2:41413049-41413068 MsG0280008909.01.T01:three_prime_UTR 30.0%
ATGCAAAGGATATCAATTTG+AGG - Chr2:41414311-41414330 MsG0280008909.01.T01:intron 30.0%
ATTTGGAAGATGGCTAAAAT+CGG - Chr2:41415442-41415461 MsG0280008909.01.T01:intron 30.0%
CACATTAATTACGTCATGAA+GGG + Chr2:41414990-41415009 None:intergenic 30.0%
CATTAAGGTTCAATAGCAAA+AGG - Chr2:41417911-41417930 MsG0280008909.01.T01:exon 30.0%
CATTATTAAATCCACTGTTG+AGG + Chr2:41414224-41414243 None:intergenic 30.0%
GAATGAATCAGAGAAAAAAG+TGG - Chr2:41413765-41413784 MsG0280008909.01.T01:intron 30.0%
GAATTTGATGAATTGGATGA+TGG - Chr2:41413442-41413461 MsG0280008909.01.T01:intron 30.0%
GAGTAATTCAAAAGCAAATG+TGG + Chr2:41417788-41417807 None:intergenic 30.0%
GTACTAGTTAAACTAATGTG+TGG - Chr2:41417460-41417479 MsG0280008909.01.T01:CDS 30.0%
GTGGAAGTTTCATAACTATT+TGG - Chr2:41415425-41415444 MsG0280008909.01.T01:intron 30.0%
TAAAGGCCTAACAAAATGAT+GGG - Chr2:41415473-41415492 MsG0280008909.01.T01:CDS 30.0%
TAAGAGAACAAGATGCAATT+TGG - Chr2:41415194-41415213 MsG0280008909.01.T01:intron 30.0%
TCCAATACGACAAAGATATA+AGG - Chr2:41416092-41416111 MsG0280008909.01.T01:intron 30.0%
TCCATTAACCACTTATGATA+TGG - Chr2:41412912-41412931 MsG0280008909.01.T01:three_prime_UTR 30.0%
TCCTTATATCTTTGTCGTAT+TGG + Chr2:41416096-41416115 None:intergenic 30.0%
TCGAAAAGAACACTTTGATA+TGG + Chr2:41417826-41417845 None:intergenic 30.0%
TGAGAAAGATGAAAATGTTG+AGG - Chr2:41413483-41413502 MsG0280008909.01.T01:intron 30.0%
TGAGGAAATTGAAATTGAGA+TGG - Chr2:41413624-41413643 MsG0280008909.01.T01:intron 30.0%
TGATCAATGGATAAAAGAAG+AGG - Chr2:41412992-41413011 MsG0280008909.01.T01:three_prime_UTR 30.0%
TTAAAGGCCTAACAAAATGA+TGG - Chr2:41415472-41415491 MsG0280008909.01.T01:CDS 30.0%
TTCCATTGAAAATCGTTGAA+CGG + Chr2:41414923-41414942 None:intergenic 30.0%
TTGATTCACAGTAACAACTT+TGG + Chr2:41413695-41413714 None:intergenic 30.0%
TTTCTTACTTGAATTGGGTT+TGG + Chr2:41413965-41413984 None:intergenic 30.0%
! AATTGGGTTTGGAGAAATTT+TGG + Chr2:41413954-41413973 None:intergenic 30.0%
! ATAAGTGGTTAATGGATAAG+AGG + Chr2:41412908-41412927 None:intergenic 30.0%
! CAACAGTGGATTTAATAATG+TGG - Chr2:41414224-41414243 MsG0280008909.01.T01:intron 30.0%
! CACTAGTTAAGGCTTTTAAA+AGG - Chr2:41414508-41414527 MsG0280008909.01.T01:intron 30.0%
! TGTTTATTTCATGCGAGTTT+TGG - Chr2:41416063-41416082 MsG0280008909.01.T01:intron 30.0%
! TTCCTTTGGAAATCTGAATT+GGG + Chr2:41413189-41413208 None:intergenic 30.0%
! TTTCCTTTGGAAATCTGAAT+TGG + Chr2:41413190-41413209 None:intergenic 30.0%
! TTTTCATCATACTAGTGTAG+TGG + Chr2:41417008-41417027 None:intergenic 30.0%
!! AAACACAGTATTGTTGACTT+TGG + Chr2:41416935-41416954 None:intergenic 30.0%
!! AACACAGTATTGTTGACTTT+GGG + Chr2:41416934-41416953 None:intergenic 30.0%
!! TCTATAGATCCTTAATTTGC+AGG - Chr2:41414793-41414812 MsG0280008909.01.T01:intron 30.0%
!! TGAATTCCTTTTGATTGTAG+GGG + Chr2:41413923-41413942 None:intergenic 30.0%
!! TTCCTGATTTTGATGAGTAT+AGG - Chr2:41415649-41415668 MsG0280008909.01.T01:CDS 30.0%
!!! ATTTTTGGATTCGTCGATTT+CGG - Chr2:41417292-41417311 MsG0280008909.01.T01:CDS 30.0%
!!! CTTTTGCTATTGAACCTTAA+TGG + Chr2:41417913-41417932 None:intergenic 30.0%
!!! TTTGGTTTTCTTTTAGCCAA+TGG - Chr2:41416741-41416760 MsG0280008909.01.T01:intron 30.0%
AAAAAACATGATTGCGCCAT+TGG + Chr2:41416760-41416779 None:intergenic 35.0%
AAATATCCAGAGAGAGTCAT+TGG - Chr2:41417064-41417083 MsG0280008909.01.T01:CDS 35.0%
AAATGTGTACGAATTGCAGT+TGG - Chr2:41415375-41415394 MsG0280008909.01.T01:intron 35.0%
AACAATCCCCTACAATCAAA+AGG - Chr2:41413914-41413933 MsG0280008909.01.T01:intron 35.0%
AAGAGTGATCAAGTTAAAGG+TGG - Chr2:41413052-41413071 MsG0280008909.01.T01:three_prime_UTR 35.0%
AAGGGGTGGTTATATTTGAA+CGG + Chr2:41414972-41414991 None:intergenic 35.0%
AATGGATAAAAGAAGAGGTG+TGG - Chr2:41412997-41413016 MsG0280008909.01.T01:three_prime_UTR 35.0%
ACCTTACAAGTGATAAGAGA+GGG + Chr2:41416006-41416025 None:intergenic 35.0%
ACGAAGAGTAAAGACAAAAG+AGG + Chr2:41416977-41416996 None:intergenic 35.0%
AGATAACTGCAAGATAGACA+AGG + Chr2:41414770-41414789 None:intergenic 35.0%
AGATTGAGAAGAACCTCAAT+TGG - Chr2:41413139-41413158 MsG0280008909.01.T01:three_prime_UTR 35.0%
AGCAAAAGGGAATAATAGCT+TGG - Chr2:41417925-41417944 MsG0280008909.01.T01:five_prime_UTR 35.0%
AGTACTATTTCAGGCTTCTT+TGG - Chr2:41415564-41415583 MsG0280008909.01.T01:intron 35.0%
AGTCTCATCTTCTTATGCAA+AGG - Chr2:41414297-41414316 MsG0280008909.01.T01:intron 35.0%
ATCAACAACACTATATGGTG+AGG - Chr2:41417614-41417633 MsG0280008909.01.T01:CDS 35.0%
ATGAAATGGAAGAGTCTTCT+TGG + Chr2:41413242-41413261 None:intergenic 35.0%
ATTGGGCTTCTTGTATGAAA+TGG + Chr2:41413256-41413275 None:intergenic 35.0%
ATTTCTGCAATGTCCTATGT+AGG - Chr2:41414744-41414763 MsG0280008909.01.T01:intron 35.0%
CAAGATCAGCATTTGTGTTT+GGG - Chr2:41414257-41414276 MsG0280008909.01.T01:intron 35.0%
CAGGGTGCATAATATATGTT+AGG - Chr2:41417510-41417529 MsG0280008909.01.T01:CDS 35.0%
GAATCCTTTCTTGACTTTGT+TGG + Chr2:41417725-41417744 None:intergenic 35.0%
GATAAGATCTGATATGCAGA+AGG - Chr2:41413288-41413307 MsG0280008909.01.T01:CDS 35.0%
GATATCAAGCAATGTTGATG+TGG - Chr2:41413531-41413550 MsG0280008909.01.T01:CDS 35.0%
GATTGAGAAGAACCTCAATT+GGG - Chr2:41413140-41413159 MsG0280008909.01.T01:three_prime_UTR 35.0%
GATTTCCAAAGGAAAAACAG+AGG - Chr2:41413195-41413214 MsG0280008909.01.T01:CDS 35.0%
GCAATTCGTACACATTTAGA+GGG + Chr2:41415372-41415391 None:intergenic 35.0%
GCCATATCATAAGTGGTTAA+TGG + Chr2:41412916-41412935 None:intergenic 35.0%
TACCTTACAAGTGATAAGAG+AGG + Chr2:41416007-41416026 None:intergenic 35.0%
TATGCATAGCTATAGTTCTC+AGG - Chr2:41417857-41417876 MsG0280008909.01.T01:CDS 35.0%
TCAAAATTCACCTGAATCAG+TGG - Chr2:41413555-41413574 MsG0280008909.01.T01:CDS 35.0%
TCAACAACACTATATGGTGA+GGG - Chr2:41417615-41417634 MsG0280008909.01.T01:CDS 35.0%
TCAAGATCAGCATTTGTGTT+TGG - Chr2:41414256-41414275 MsG0280008909.01.T01:intron 35.0%
TCAGCACAATTAACTGCATA+TGG - Chr2:41415621-41415640 MsG0280008909.01.T01:CDS 35.0%
TCCCAAAATGTAAGCACAAA+CGG - Chr2:41414370-41414389 MsG0280008909.01.T01:intron 35.0%
TGATTACACTGACAGACAAA+TGG - Chr2:41415523-41415542 MsG0280008909.01.T01:intron 35.0%
TGCAATTCGTACACATTTAG+AGG + Chr2:41415373-41415392 None:intergenic 35.0%
TGCAATTTGGATGCTGAAAT+TGG - Chr2:41415207-41415226 MsG0280008909.01.T01:intron 35.0%
TGCAGTGTTTGTACTATTTG+TGG - Chr2:41417579-41417598 MsG0280008909.01.T01:CDS 35.0%
TGGAGTCAACATAGAATAGA+AGG + Chr2:41416166-41416185 None:intergenic 35.0%
TTATGATTTCTCCTCAACAG+TGG - Chr2:41414210-41414229 MsG0280008909.01.T01:intron 35.0%
TTTCTTCTGTTCTGCTTCAT+TGG + Chr2:41413794-41413813 None:intergenic 35.0%
! CGTACAAATACAGGCATTTT+AGG + Chr2:41415034-41415053 None:intergenic 35.0%
! GAAAGACCCATCATTTTGTT+AGG + Chr2:41415482-41415501 None:intergenic 35.0%
! GAATGAAAGCTTTGATGTGA+AGG - Chr2:41413648-41413667 MsG0280008909.01.T01:intron 35.0%
! TTGATCCCATAACTTGCATT+GGG - Chr2:41416798-41416817 MsG0280008909.01.T01:CDS 35.0%
! TTTGATCCCATAACTTGCAT+TGG - Chr2:41416797-41416816 MsG0280008909.01.T01:CDS 35.0%
!! AGCTAGTTTGATTTTGTCGT+TGG + Chr2:41416648-41416667 None:intergenic 35.0%
!! AGTATTGTTGACTTTGGGAT+TGG + Chr2:41416929-41416948 None:intergenic 35.0%
!! ATCACATGGATTAGCATCTT+TGG - Chr2:41416723-41416742 MsG0280008909.01.T01:intron 35.0%
!! GTATTGTTGACTTTGGGATT+GGG + Chr2:41416928-41416947 None:intergenic 35.0%
!! TAGACTCTGCAACTTGTTTT+GGG + Chr2:41414121-41414140 None:intergenic 35.0%
!! TTGTGTTGTTTCTGTCTAAC+TGG + Chr2:41417691-41417710 None:intergenic 35.0%
!!! AAACTGAAAGCACTTTTCTC+TGG - Chr2:41415259-41415278 MsG0280008909.01.T01:intron 35.0%
!!! TTTTTGGATTCGTCGATTTC+GGG - Chr2:41417293-41417312 MsG0280008909.01.T01:CDS 35.0%
AAACAGGATGTGATGAAGCA+TGG - Chr2:41417656-41417675 MsG0280008909.01.T01:CDS 40.0%
AACAGGATGTGATGAAGCAT+GGG - Chr2:41417657-41417676 MsG0280008909.01.T01:CDS 40.0%
AAGAGACCCAATGCAAGTTA+TGG + Chr2:41416807-41416826 None:intergenic 40.0%
AAGATAGACAAGGCCTACAT+AGG + Chr2:41414760-41414779 None:intergenic 40.0%
ACTACAAGAGGAACAGAAAC+TGG + Chr2:41413892-41413911 None:intergenic 40.0%
ACTATATGGTGAGGGATGAA+TGG - Chr2:41417623-41417642 MsG0280008909.01.T01:CDS 40.0%
AGAGACCCAATGCAAGTTAT+GGG + Chr2:41416806-41416825 None:intergenic 40.0%
AGCCCAATTCAGATTTCCAA+AGG - Chr2:41413184-41413203 MsG0280008909.01.T01:CDS 40.0%
ATCATACTAGTGTAGTGGCT+GGG + Chr2:41417003-41417022 None:intergenic 40.0%
ATCTGTTGTTGCTCGCATTT+GGG - Chr2:41417386-41417405 MsG0280008909.01.T01:CDS 40.0%
ATGCACTCACAAAAAAGCTG+TGG - Chr2:41417329-41417348 MsG0280008909.01.T01:CDS 40.0%
ATTTAGTGTATGCCGACAGA+AGG + Chr2:41415785-41415804 None:intergenic 40.0%
CAAAACAAGTTGCAGAGTCT+AGG - Chr2:41414120-41414139 MsG0280008909.01.T01:intron 40.0%
CAAATGGGCCATATCATAAG+TGG + Chr2:41412923-41412942 None:intergenic 40.0%
CATTGAAAATCGTTGAACGG+TGG + Chr2:41414920-41414939 None:intergenic 40.0%
CCCAAAATGTAAGCACAAAC+GGG - Chr2:41414371-41414390 MsG0280008909.01.T01:intron 40.0%
CTATATGGTGAGGGATGAAT+GGG - Chr2:41417624-41417643 MsG0280008909.01.T01:CDS 40.0%
GAACAAGAAGGAGGAAATGT+TGG - Chr2:41413109-41413128 MsG0280008909.01.T01:three_prime_UTR 40.0%
GAAGAACAAGAACAAGAAGG+AGG - Chr2:41413100-41413119 MsG0280008909.01.T01:three_prime_UTR 40.0%
GAATACGAAGAGCAGATCTT+TGG + Chr2:41415603-41415622 None:intergenic 40.0%
GAATGGGTAGAAGATGAAAC+AGG - Chr2:41417640-41417659 MsG0280008909.01.T01:CDS 40.0%
GATATGGCCCATTTGTCTTT+AGG - Chr2:41412928-41412947 MsG0280008909.01.T01:intron 40.0%
GCTACCAACAAAGTCAAGAA+AGG - Chr2:41417718-41417737 MsG0280008909.01.T01:CDS 40.0%
GGATTATGATACCCTTCTGT+CGG - Chr2:41415770-41415789 MsG0280008909.01.T01:intron 40.0%
GTAACAACTTTGGATTCTGC+TGG + Chr2:41413685-41413704 None:intergenic 40.0%
GTAGAATAGATTAGACGGTG+CGG - Chr2:41415680-41415699 MsG0280008909.01.T01:CDS 40.0%
TAAAAGCCTTAACTAGTGCC+CGG + Chr2:41414506-41414525 None:intergenic 40.0%
TAGGCATATTCGGTCTAGTA+TGG - Chr2:41417355-41417374 MsG0280008909.01.T01:CDS 40.0%
TGAAGCAGAACAGAAGAAAG+TGG - Chr2:41413795-41413814 MsG0280008909.01.T01:intron 40.0%
TGATTCTGAATCAGATGGTG+AGG - Chr2:41413591-41413610 MsG0280008909.01.T01:CDS 40.0%
TGGTTACTATAGCTAGCTAG+TGG - Chr2:41417760-41417779 MsG0280008909.01.T01:CDS 40.0%
TTAATTACGTCATGAAGGGG+TGG + Chr2:41414986-41415005 None:intergenic 40.0%
TTGGTTCCATCAGAAATGCA+TGG + Chr2:41413223-41413242 None:intergenic 40.0%
TTGTCTTCGTGAGCTTAACT+CGG - Chr2:41417483-41417502 MsG0280008909.01.T01:CDS 40.0%
TTTAGTGTATGCCGACAGAA+GGG + Chr2:41415784-41415803 None:intergenic 40.0%
! AAGGATTCTAAAGGGATGCA+TGG - Chr2:41417737-41417756 MsG0280008909.01.T01:CDS 40.0%
! ACCCGTTTGTGCTTACATTT+TGG + Chr2:41414375-41414394 None:intergenic 40.0%
! CACCGTTCAACGATTTTCAA+TGG - Chr2:41414918-41414937 MsG0280008909.01.T01:intron 40.0%
! CCCGTTTGTGCTTACATTTT+GGG + Chr2:41414374-41414393 None:intergenic 40.0%
! CTACTGCGTTCTTCTTCTTT+TGG + Chr2:41414087-41414106 None:intergenic 40.0%
! TCAGCATTTGTGTTTGGGAT+TGG - Chr2:41414262-41414281 MsG0280008909.01.T01:intron 40.0%
! TCTCTTTGAAGACCCAATTG+AGG + Chr2:41413155-41413174 None:intergenic 40.0%
!! CTAGACTCTGCAACTTGTTT+TGG + Chr2:41414122-41414141 None:intergenic 40.0%
!! GGCAGTTTTGCTCTTTGTTT+TGG - Chr2:41415396-41415415 MsG0280008909.01.T01:intron 40.0%
!! TGGTTCCTCTGTTTTTCCTT+TGG + Chr2:41413203-41413222 None:intergenic 40.0%
!!! CTCTTTGTTTTGGCAAGATG+TGG - Chr2:41415406-41415425 MsG0280008909.01.T01:intron 40.0%
!!! TGCTTACATTTTGGGACTGA+GGG + Chr2:41414366-41414385 None:intergenic 40.0%
AAAAGCCTTAACTAGTGCCC+GGG + Chr2:41414505-41414524 None:intergenic 45.0%
AGATCTGATATGCAGAAGGG+TGG - Chr2:41413292-41413311 MsG0280008909.01.T01:CDS 45.0%
ATGCAACGATCGGCTAATGT+GGG + Chr2:41415718-41415737 None:intergenic 45.0%
ATTACCTTCATTGTGGTGCC+AGG + Chr2:41415289-41415308 None:intergenic 45.0%
CAAGAAGGAGGAAATGTTGG+TGG - Chr2:41413112-41413131 MsG0280008909.01.T01:three_prime_UTR 45.0%
CACAAAAAAGCTGTGGCTCT+AGG - Chr2:41417336-41417355 MsG0280008909.01.T01:CDS 45.0%
CATCATACTAGTGTAGTGGC+TGG + Chr2:41417004-41417023 None:intergenic 45.0%
CATCTGTTGTTGCTCGCATT+TGG - Chr2:41417385-41417404 MsG0280008909.01.T01:CDS 45.0%
CCTGAATCAGTGGTTCATGT+TGG - Chr2:41413565-41413584 MsG0280008909.01.T01:CDS 45.0%
GAAGTAGAAGCAATGGAGGT+TGG + Chr2:41412882-41412901 None:intergenic 45.0%
GAATCAGTGGTTCATGTTGG+TGG - Chr2:41413568-41413587 MsG0280008909.01.T01:CDS 45.0%
GAGGAACCATGCATTTCTGA+TGG - Chr2:41413214-41413233 MsG0280008909.01.T01:CDS 45.0%
GAGGAAGACGAAATCTGAGT+TGG - Chr2:41413390-41413409 MsG0280008909.01.T01:intron 45.0%
GAGGCTTGAAGTAGAAGCAA+TGG + Chr2:41412889-41412908 None:intergenic 45.0%
GCAAAACCAATGACTCTCTC+TGG + Chr2:41417073-41417092 None:intergenic 45.0%
GCCCTCTCTTATCACTTGTA+AGG - Chr2:41416002-41416021 MsG0280008909.01.T01:intron 45.0%
GCTTGAAGTAGAAGCAATGG+AGG + Chr2:41412886-41412905 None:intergenic 45.0%
GGGGATTGTTTCACTACAAG+AGG + Chr2:41413904-41413923 None:intergenic 45.0%
GGGTGGTTATATTTGAACGG+TGG + Chr2:41414969-41414988 None:intergenic 45.0%
GGTGGTGATTCTGAATCAGA+TGG - Chr2:41413586-41413605 MsG0280008909.01.T01:CDS 45.0%
TCTTGTTAACGAGTACCTCC+GGG + Chr2:41414632-41414651 None:intergenic 45.0%
TGGTGAGGTTGAAGATGATG+AGG - Chr2:41413606-41413625 MsG0280008909.01.T01:CDS 45.0%
! GATTCTAAAGGGATGCATGG+TGG - Chr2:41417740-41417759 MsG0280008909.01.T01:CDS 45.0%
! GTCTTGTTAACGAGTACCTC+CGG + Chr2:41414633-41414652 None:intergenic 45.0%
!! CCAACATGAACCACTGATTC+AGG + Chr2:41413568-41413587 None:intergenic 45.0%
!!! GTGCTTACATTTTGGGACTG+AGG + Chr2:41414367-41414386 None:intergenic 45.0%
AAAGCCTTAACTAGTGCCCG+GGG + Chr2:41414504-41414523 None:intergenic 50.0%
AATGGTCCTCCACATCCTTG+TGG - Chr2:41416901-41416920 MsG0280008909.01.T01:intron 50.0%
AGATCCTGGCACCACAATGA+AGG - Chr2:41415282-41415301 MsG0280008909.01.T01:intron 50.0%
CATGCAACGATCGGCTAATG+TGG + Chr2:41415719-41415738 None:intergenic 50.0%
CTTCGTGAGCTTAACTCGGT+TGG - Chr2:41417487-41417506 MsG0280008909.01.T01:CDS 50.0%
CTTGTTAACGAGTACCTCCG+GGG + Chr2:41414631-41414650 None:intergenic 50.0%
GTGAAGCTGCAGGGAAATTG+AGG - Chr2:41413317-41413336 MsG0280008909.01.T01:intron 50.0%
TCTGATATGCAGAAGGGTGG+TGG - Chr2:41413295-41413314 MsG0280008909.01.T01:CDS 50.0%
TGAGCTTAACTCGGTTGGCA+GGG - Chr2:41417492-41417511 MsG0280008909.01.T01:CDS 50.0%
TGTCGTTGGATGAGACGATG+AGG + Chr2:41416634-41416653 None:intergenic 50.0%
!! ACTTTGGGATTGGGACCACA+AGG + Chr2:41416919-41416938 None:intergenic 50.0%
!! GCACTTTTCTCTGGAGATCC+TGG - Chr2:41415268-41415287 MsG0280008909.01.T01:intron 50.0%
!! GCTGTGGCTCTAGGCATATT+CGG - Chr2:41417345-41417364 MsG0280008909.01.T01:CDS 50.0%
!! GGTATCCTTAAAGAGTGCCC+CGG - Chr2:41414611-41414630 MsG0280008909.01.T01:intron 50.0%
!! TCGTCGATTTCGGGATGCAT+GGG - Chr2:41417302-41417321 MsG0280008909.01.T01:CDS 50.0%
!! TTCGTCGATTTCGGGATGCA+TGG - Chr2:41417301-41417320 MsG0280008909.01.T01:CDS 50.0%
AAATGTTAACCCGTGCCCCC+GGG - Chr2:41414485-41414504 MsG0280008909.01.T01:intron 55.0%
AAGCCTTAACTAGTGCCCGG+GGG + Chr2:41414503-41414522 None:intergenic 55.0%
AGACGGTGCGGTGCTTTCAT+GGG - Chr2:41415692-41415711 MsG0280008909.01.T01:CDS 55.0%
GAAATGTTAACCCGTGCCCC+CGG - Chr2:41414484-41414503 MsG0280008909.01.T01:intron 55.0%
GGATTGGGACCACAAGGATG+TGG + Chr2:41416913-41416932 None:intergenic 55.0%
GTGAGCTTAACTCGGTTGGC+AGG - Chr2:41417491-41417510 MsG0280008909.01.T01:CDS 55.0%
GTTGTTGCTCGCATTTGGGC+AGG - Chr2:41417390-41417409 MsG0280008909.01.T01:CDS 55.0%
TAGACGGTGCGGTGCTTTCA+TGG - Chr2:41415691-41415710 MsG0280008909.01.T01:CDS 55.0%
TTGGGACCACAAGGATGTGG+AGG + Chr2:41416910-41416929 None:intergenic 55.0%
! AGAAGAGGTGTGGTTGCTGC+AGG - Chr2:41413007-41413026 MsG0280008909.01.T01:three_prime_UTR 55.0%
! GAAGAGGTGTGGTTGCTGCA+GGG - Chr2:41413008-41413027 MsG0280008909.01.T01:three_prime_UTR 55.0%
! TACCTCCGGGGCACTCTTTA+AGG + Chr2:41414619-41414638 None:intergenic 55.0%
!! ATCCTTAAAGAGTGCCCCGG+AGG - Chr2:41414614-41414633 MsG0280008909.01.T01:intron 55.0%
GGTTGCTGCAGGGTCAGTGT+GGG - Chr2:41413018-41413037 MsG0280008909.01.T01:three_prime_UTR 60.0%
TGGTTGCTGCAGGGTCAGTG+TGG - Chr2:41413017-41413036 MsG0280008909.01.T01:three_prime_UTR 60.0%
TTAACTAGTGCCCGGGGGCA+CGG + Chr2:41414498-41414517 None:intergenic 60.0%
! AAGGGTGGTGGTGAAGCTGC+AGG - Chr2:41413307-41413326 MsG0280008909.01.T01:CDS 60.0%
! AGGGTGGTGGTGAAGCTGCA+GGG - Chr2:41413308-41413327 MsG0280008909.01.T01:CDS 60.0%
GTGCCCCCGGGCACTAGTTA+AGG - Chr2:41414497-41414516 MsG0280008909.01.T01:intron 65.0%
! TAACTAGTGCCCGGGGGCAC+GGG + Chr2:41414497-41414516 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 41412878 41418041 41412878 ID=MsG0280008909.01;Name=MsG0280008909.01
Chr2 mRNA 41412878 41418041 41412878 ID=MsG0280008909.01.T01;Parent=MsG0280008909.01;Name=MsG0280008909.01.T01;_AED=0.37;_eAED=0.37;_QI=120|0.71|1|1|0.85|0.75|8|268|549
Chr2 exon 41416943 41418041 41416943 ID=MsG0280008909.01.T01:exon:29857;Parent=MsG0280008909.01.T01
Chr2 exon 41416778 41416843 41416778 ID=MsG0280008909.01.T01:exon:29858;Parent=MsG0280008909.01.T01
Chr2 exon 41416587 41416689 41416587 ID=MsG0280008909.01.T01:exon:29859;Parent=MsG0280008909.01.T01
Chr2 exon 41415616 41415760 41415616 ID=MsG0280008909.01.T01:exon:29860;Parent=MsG0280008909.01.T01
Chr2 exon 41415456 41415525 41415456 ID=MsG0280008909.01.T01:exon:29861;Parent=MsG0280008909.01.T01
Chr2 exon 41413508 41413630 41413508 ID=MsG0280008909.01.T01:exon:29862;Parent=MsG0280008909.01.T01
Chr2 exon 41412967 41413335 41412967 ID=MsG0280008909.01.T01:exon:29863;Parent=MsG0280008909.01.T01
Chr2 exon 41412878 41412940 41412878 ID=MsG0280008909.01.T01:exon:29864;Parent=MsG0280008909.01.T01
Chr2 five_prime_UTR 41417922 41418041 41417922 ID=MsG0280008909.01.T01:five_prime_utr;Parent=MsG0280008909.01.T01
Chr2 CDS 41416943 41417921 41416943 ID=MsG0280008909.01.T01:cds;Parent=MsG0280008909.01.T01
Chr2 CDS 41416778 41416843 41416778 ID=MsG0280008909.01.T01:cds;Parent=MsG0280008909.01.T01
Chr2 CDS 41416587 41416689 41416587 ID=MsG0280008909.01.T01:cds;Parent=MsG0280008909.01.T01
Chr2 CDS 41415616 41415760 41415616 ID=MsG0280008909.01.T01:cds;Parent=MsG0280008909.01.T01
Chr2 CDS 41415456 41415525 41415456 ID=MsG0280008909.01.T01:cds;Parent=MsG0280008909.01.T01
Chr2 CDS 41413508 41413630 41413508 ID=MsG0280008909.01.T01:cds;Parent=MsG0280008909.01.T01
Chr2 CDS 41413172 41413335 41413172 ID=MsG0280008909.01.T01:cds;Parent=MsG0280008909.01.T01
Chr2 three_prime_UTR 41412967 41413171 41412967 ID=MsG0280008909.01.T01:three_prime_utr;Parent=MsG0280008909.01.T01
Chr2 three_prime_UTR 41412878 41412940 41412878 ID=MsG0280008909.01.T01:three_prime_utr;Parent=MsG0280008909.01.T01
Gene Sequence

>MsG0280008909.01.T01

ATGGATAAAAGAAGAGGTGTGGTTGCTGCAGGGTCAGTGTGGGAGAGTAGAATGAAGAGTGATCAAGTTAAAGGTGGAATCAAAGTGTTCAAAGCAGAAAAAGAAGAACAAGAACAAGAAGGAGGAAATGTTGGTGGTTCTAGATTGAGAAGAACCTCAATTGGGTCTTCAAAGAGAAAAATTTGTAGCCCAATTCAGATTTCCAAAGGAAAAACAGAGGAACCATGCATTTCTGATGGAACCAAGAAGACTCTTCCATTTCATACAAGAAGCCCAATTCAATCAAGAAAGATAAGATCTGATATGCAGAAGGGTGGTGGTGAAGCTGCAGGGAAATTGAGGAAGATTAAATCAGATCCAATCAAGAAGAATGTTAATGATTCAATTGAATTGAGGAAGACGAAATCTGAGTTGGATCGAGTTCAAGAAAATGAGACAAAGAATGAATTTGATGAATTGGATGATGGGTTTGAAAAGATTGAAGCTGAGAAAGATGAAAATGTTGAGGATTTTGATGTGTGTCAAGAGAAAGAGATATCAAGCAATGTTGATGTGGTTCAAAATTCACCTGAATCAGTGGTTCATGTTGGTGGTGATTCTGAATCAGATGGTGAGGTTGAAGATGATGAGGAAATTGAAATTGAGATGGAGAATGAAAGCTTTGATGTGAAGGAAATTAGTATTCCAGCAGAATCCAAAGTTGTTACTGTGAATCAACAAGAAAATGATAAGGTTGATGTGAATGAACCAGAAAAGAAGATTGTTTTGAATGAATCAGAGAAAAAAGTGGTAACCAATGAAGCAGAACAGAAGAAAGTGGTAACCAATGAAGCAGAACAGAAGAAAGTGGTGAATGCCAATATGAGATTTCATCACAAAAATGAAAGAAGACCAGTTTCTGTTCCTCTTGTAGTGAAACAATCCCCTACAATCAAAAGGAATTCAAAAATTTACCAAAATTTCTCCAAACCCAATTCAAGTTCAGTTCCAAAAGAAGAAGAACGCAGTAGCTTTTCACAAACCCAAAACAAGTTGCAGAGTCTAGTGGATTTAATAATGTGGAGAGATGTTTCAAGATCAGCATTTGTGTTTGGGATTGGAACATTTGTTATAGTCTCATCTTCTTATGCAAAGGATATCAATTTGAGGGGAGTGATAGATGTAGAAGACTCAAATTATGTAGTAAGAGAACAAGATGCAATTTGGATGCTGAAATTGGTCCTACCTTATTTGAATGAATTCTTGTCAAAACTGAAAGCACTTTTCTCTGGAGATCCTGGCACCACAATGAAGTTGGCAGTTTTGCTCTTTGTTTTGGCAAGATGTGGAAGTTTCATAACTATTTGGAAGATGGCTAAAATCGCAAATTTTTGGATTCGTCGATTTCGGGATGCATGGGATTCATGCACTCACAAAAAAGCTGTGGCTCTAGGCATATTCGGTCTAGTATGGAATTTGTCATCTGTTGTTGCTCGCATTTGGGCAGTGTTTGTACTATTTGTGGCATTTAGATACTATCAACAACACTATATGGTGAGGGATGAATGGGTAGAAGATGAAACAGGATGTGATGAAGCATGGGAAGAAGAACCAGTTAGACAGAAACAACACAACTTCGTTGCTACCAACAAAGTCAAGAAAGGATTCTAA

Protein sequence

>MsG0280008909.01.T01

MDKRRGVVAAGSVWESRMKSDQVKGGIKVFKAEKEEQEQEGGNVGGSRLRRTSIGSSKRKICSPIQISKGKTEEPCISDGTKKTLPFHTRSPIQSRKIRSDMQKGGGEAAGKLRKIKSDPIKKNVNDSIELRKTKSELDRVQENETKNEFDELDDGFEKIEAEKDENVEDFDVCQEKEISSNVDVVQNSPESVVHVGGDSESDGEVEDDEEIEIEMENESFDVKEISIPAESKVVTVNQQENDKVDVNEPEKKIVLNESEKKVVTNEAEQKKVVTNEAEQKKVVNANMRFHHKNERRPVSVPLVVKQSPTIKRNSKIYQNFSKPNSSSVPKEEERSSFSQTQNKLQSLVDLIMWRDVSRSAFVFGIGTFVIVSSSYAKDINLRGVIDVEDSNYVVREQDAIWMLKLVLPYLNEFLSKLKALFSGDPGTTMKLAVLLFVLARCGSFITIWKMAKIANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYMVRDEWVEDETGCDEAWEEEPVRQKQHNFVATNKVKKGF*