Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027429.01.T03 | ACJ83321.1 | 81.982 | 111 | 15 | 2 | 6 | 114 | 84 | 191 | 2.11E-54 | 178 |
| MsG0580027429.01.T01 | XP_013453968.1 | 97.484 | 159 | 4 | 0 | 1 | 159 | 33 | 191 | 2.66E-109 | 319 |
| MsG0580027429.01.T02 | XP_013453968.1 | 98.305 | 118 | 2 | 0 | 1 | 118 | 74 | 191 | 1.36E-79 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027429.01.T01 | G7JX88 | 97.484 | 159 | 4 | 0 | 1 | 159 | 33 | 191 | 1.27e-109 | 319 |
| MsG0580027429.01.T02 | G7JX88 | 98.305 | 118 | 2 | 0 | 1 | 118 | 74 | 191 | 6.50e-80 | 242 |
| MsG0580027429.01.T03 | B7FFD1 | 81.982 | 111 | 15 | 2 | 6 | 114 | 84 | 191 | 1.01e-54 | 178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580027429.01 | MsG0480022469.01 | PPI |
| MsG0580027429.01 | MsG0480022469.01 | PPI |
| MsG0580027429.01 | MsG0480022420.01 | PPI |
| MsG0580027429.01 | MsG0480022420.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027429.01.T03 | MTR_5g057670 | 81.081 | 111 | 16 | 2 | 6 | 114 | 84 | 191 | 2.49e-57 | 176 |
| MsG0580027429.01.T03 | MTR_5g057335 | 81.081 | 111 | 16 | 2 | 6 | 114 | 84 | 191 | 2.49e-57 | 176 |
| MsG0580027429.01.T03 | MTR_4g089100 | 55.385 | 65 | 29 | 0 | 28 | 92 | 100 | 164 | 1.72e-19 | 79.3 |
| MsG0580027429.01.T03 | MTR_1g109660 | 39.216 | 102 | 59 | 1 | 12 | 113 | 86 | 184 | 1.98e-17 | 73.9 |
| MsG0580027429.01.T03 | MTR_1g109700 | 38.462 | 78 | 45 | 1 | 15 | 92 | 90 | 164 | 2.68e-12 | 60.5 |
| MsG0580027429.01.T01 | MTR_5g057670 | 97.484 | 159 | 4 | 0 | 1 | 159 | 33 | 191 | 3.22e-113 | 319 |
| MsG0580027429.01.T01 | MTR_5g057335 | 97.484 | 159 | 4 | 0 | 1 | 159 | 33 | 191 | 3.22e-113 | 319 |
| MsG0580027429.01.T01 | MTR_4g089100 | 49.600 | 125 | 63 | 0 | 13 | 137 | 40 | 164 | 6.32e-44 | 143 |
| MsG0580027429.01.T01 | MTR_2g079830 | 45.714 | 140 | 76 | 0 | 1 | 140 | 29 | 168 | 2.01e-37 | 127 |
| MsG0580027429.01.T01 | MTR_1g109660 | 39.241 | 158 | 93 | 1 | 1 | 158 | 30 | 184 | 5.28e-37 | 126 |
| MsG0580027429.01.T01 | MTR_1g109700 | 36.000 | 150 | 96 | 0 | 9 | 158 | 36 | 185 | 1.94e-30 | 109 |
| MsG0580027429.01.T02 | MTR_5g057670 | 98.305 | 118 | 2 | 0 | 1 | 118 | 74 | 191 | 1.65e-83 | 242 |
| MsG0580027429.01.T02 | MTR_5g057335 | 98.305 | 118 | 2 | 0 | 1 | 118 | 74 | 191 | 1.65e-83 | 242 |
| MsG0580027429.01.T02 | MTR_4g089100 | 52.083 | 96 | 46 | 0 | 1 | 96 | 69 | 164 | 1.72e-33 | 115 |
| MsG0580027429.01.T02 | MTR_1g109660 | 40.517 | 116 | 66 | 1 | 2 | 117 | 72 | 184 | 7.96e-27 | 98.6 |
| MsG0580027429.01.T02 | MTR_2g079830 | 44.444 | 99 | 55 | 0 | 1 | 99 | 70 | 168 | 1.22e-23 | 90.1 |
| MsG0580027429.01.T02 | MTR_1g109700 | 33.913 | 115 | 76 | 0 | 3 | 117 | 71 | 185 | 5.12e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027429.01.T03 | AT1G13380 | 64.000 | 100 | 30 | 2 | 15 | 114 | 95 | 188 | 3.22e-38 | 127 |
| MsG0580027429.01.T03 | AT4G27435 | 42.857 | 70 | 40 | 0 | 29 | 98 | 102 | 171 | 3.05e-15 | 68.2 |
| MsG0580027429.01.T03 | AT1G61065 | 44.304 | 79 | 43 | 1 | 29 | 106 | 101 | 179 | 7.23e-15 | 67.0 |
| MsG0580027429.01.T03 | AT1G68220 | 39.286 | 84 | 50 | 1 | 28 | 111 | 103 | 185 | 1.16e-14 | 67.0 |
| MsG0580027429.01.T03 | AT3G15480 | 36.364 | 88 | 54 | 2 | 6 | 92 | 80 | 166 | 1.21e-13 | 63.9 |
| MsG0580027429.01.T03 | AT1G52910 | 46.154 | 65 | 34 | 1 | 29 | 92 | 102 | 166 | 2.16e-13 | 63.2 |
| MsG0580027429.01.T01 | AT1G13380 | 75.497 | 151 | 34 | 1 | 9 | 159 | 41 | 188 | 1.03e-71 | 214 |
| MsG0580027429.01.T01 | AT4G27435 | 49.231 | 130 | 66 | 0 | 14 | 143 | 42 | 171 | 9.57e-44 | 142 |
| MsG0580027429.01.T01 | AT1G61065 | 46.099 | 141 | 75 | 1 | 12 | 151 | 39 | 179 | 1.14e-41 | 137 |
| MsG0580027429.01.T01 | AT3G15480 | 43.478 | 138 | 77 | 1 | 1 | 137 | 29 | 166 | 1.22e-39 | 132 |
| MsG0580027429.01.T01 | AT1G52910 | 44.615 | 130 | 70 | 2 | 10 | 137 | 37 | 166 | 5.92e-35 | 120 |
| MsG0580027429.01.T01 | AT1G68220 | 39.726 | 146 | 86 | 2 | 12 | 156 | 41 | 185 | 2.40e-33 | 117 |
| MsG0580027429.01.T01 | AT5G17210 | 29.630 | 135 | 92 | 2 | 2 | 135 | 33 | 165 | 2.31e-11 | 60.1 |
| MsG0580027429.01.T02 | AT1G13380 | 73.276 | 116 | 28 | 1 | 3 | 118 | 76 | 188 | 7.42e-60 | 182 |
| MsG0580027429.01.T02 | AT4G27435 | 45.098 | 102 | 56 | 0 | 1 | 102 | 70 | 171 | 4.94e-30 | 106 |
| MsG0580027429.01.T02 | AT1G61065 | 44.144 | 111 | 61 | 1 | 1 | 110 | 69 | 179 | 1.18e-28 | 102 |
| MsG0580027429.01.T02 | AT1G68220 | 41.739 | 115 | 65 | 2 | 2 | 115 | 72 | 185 | 5.06e-27 | 99.4 |
| MsG0580027429.01.T02 | AT3G15480 | 44.330 | 97 | 53 | 1 | 1 | 96 | 70 | 166 | 4.60e-26 | 96.3 |
| MsG0580027429.01.T02 | AT1G52910 | 45.361 | 97 | 52 | 1 | 1 | 96 | 70 | 166 | 5.96e-25 | 93.2 |
Find 44 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCCTATTTCTTCTTTC+AGG | 0.118110 | 5:+60511837 | MsG0580027429.01.T01:CDS |
| ATAAATAATTCCCCGGTATT+TGG | 0.197206 | 5:-60512713 | None:intergenic |
| TTCAGGTGAATCACTGCTTA+TGG | 0.206084 | 5:+60511854 | MsG0580027429.01.T01:CDS |
| TTTGGGAGGCCTTTAACCCC+TGG | 0.341537 | 5:+60511897 | MsG0580027429.01.T01:CDS |
| TCAGGTGAATCACTGCTTAT+GGG | 0.342216 | 5:+60511855 | MsG0580027429.01.T01:CDS |
| ATTCACCTGAAAGAAGAAAT+AGG | 0.343625 | 5:-60511842 | None:intergenic |
| TCAGATGTCGCAACTGGTTA+TGG | 0.349671 | 5:+60511807 | MsG0580027429.01.T01:CDS |
| AGGAAAGGCATCTTCATTAC+CGG | 0.367227 | 5:+60512763 | MsG0580027429.01.T01:CDS |
| ACTTCTCCTGTGAAAGTTTG+AGG | 0.369772 | 5:+60512743 | MsG0580027429.01.T01:CDS |
| CTCTTTGCTCTTGCTTCACA+GGG | 0.387476 | 5:+60511735 | None:intergenic |
| CAATATGTTTCATTTGTTCC+TGG | 0.388667 | 5:-60511774 | None:intergenic |
| AGAAGAAAGAAAATATATAA+TGG | 0.392892 | 5:-60511937 | None:intergenic |
| TTGGGAGGCCTTTAACCCCT+GGG | 0.398501 | 5:+60511898 | MsG0580027429.01.T01:CDS |
| CACTTTCTCAGAAGACCAAT+CGG | 0.400256 | 5:+60512860 | MsG0580027429.01.T01:CDS |
| TCCCCGGTATTTGGTGTGAT+AGG | 0.408796 | 5:-60512704 | None:intergenic |
| GTGACAAAGTGCATGTGCTT+TGG | 0.415268 | 5:+60511879 | MsG0580027429.01.T01:CDS |
| GCCTTTCCTCAAACTTTCAC+AGG | 0.425540 | 5:-60512749 | None:intergenic |
| TACAGTTCAGATGTCGCAAC+TGG | 0.430054 | 5:+60511801 | MsG0580027429.01.T01:CDS |
| TGACAAAGTGCATGTGCTTT+GGG | 0.430960 | 5:+60511880 | MsG0580027429.01.T01:CDS |
| TGTTCCTGGAGTTGTGTGAA+TGG | 0.437125 | 5:-60511760 | None:intergenic |
| TGCAACCAGAAAAGTGGCCC+TGG | 0.491221 | 5:-60512647 | None:intergenic |
| CAAGGTCAATCATGCATGTC+CGG | 0.491279 | 5:-60512905 | None:intergenic |
| ATGCCTATCACACCAAATAC+CGG | 0.505251 | 5:+60512701 | MsG0580027429.01.T01:CDS |
| CGATTGGTCTTCTGAGAAAG+TGG | 0.515883 | 5:-60512859 | None:intergenic |
| GCAGAATCATGCTTAATAGC+TGG | 0.536563 | 5:+60512667 | MsG0580027429.01.T01:CDS |
| TGATTCTGCAACCAGAAAAG+TGG | 0.540613 | 5:-60512653 | None:intergenic |
| AATCGGGTTAGTTCCACGAT+TGG | 0.543860 | 5:+60512877 | MsG0580027429.01.T01:CDS |
| TGCCTATCACACCAAATACC+GGG | 0.552373 | 5:+60512702 | MsG0580027429.01.T01:CDS |
| TCCTGTGAAAGTTTGAGGAA+AGG | 0.553407 | 5:+60512748 | MsG0580027429.01.T01:CDS |
| ACTTTCTCAGAAGACCAATC+GGG | 0.557107 | 5:+60512861 | MsG0580027429.01.T01:CDS |
| TACAACGATGAAAATTGCTC+CGG | 0.580379 | 5:-60512782 | None:intergenic |
| GGAACCATTCACACAACTCC+AGG | 0.583570 | 5:+60511756 | MsG0580027429.01.T01:CDS |
| AGTTCCACGATTGGAATGAC+CGG | 0.588851 | 5:+60512886 | MsG0580027429.01.T01:CDS |
| TGGGAGGCCTTTAACCCCTG+GGG | 0.589713 | 5:+60511899 | MsG0580027429.01.T01:CDS |
| GTCGCAACTGGTTATGGAGT+GGG | 0.598364 | 5:+60511813 | MsG0580027429.01.T01:CDS |
| AATCGTGGAACTAACCCGAT+TGG | 0.605332 | 5:-60512875 | None:intergenic |
| TCTGAGCATAAATAATTCCC+CGG | 0.610710 | 5:-60512720 | None:intergenic |
| GGGAGGCCTTTAACCCCTGG+GGG | 0.642259 | 5:+60511900 | MsG0580027429.01.T01:CDS |
| CTTCTGAGAAAGTGGAGTAG+TGG | 0.649249 | 5:-60512851 | None:intergenic |
| ATGTCCGGTCATTCCAATCG+TGG | 0.657041 | 5:-60512890 | None:intergenic |
| CTACTACATGTACTTCACAA+AGG | 0.667346 | 5:+60512825 | MsG0580027429.01.T01:CDS |
| GCCTATCACACCAAATACCG+GGG | 0.675980 | 5:+60512703 | MsG0580027429.01.T01:CDS |
| CAAAGTGCATGTGCTTTGGG+AGG | 0.685983 | 5:+60511883 | MsG0580027429.01.T01:CDS |
| TGTCGCAACTGGTTATGGAG+TGG | 0.687826 | 5:+60511812 | MsG0580027429.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAGAAAGAAAATATATAA+TGG | - | Chr5:60511940-60511959 | None:intergenic | 15.0% |
| !!! | ATTATTGGAAATTTCATTTT+TGG | + | Chr5:60512086-60512105 | MsG0580027429.01.T01:intron | 15.0% |
| !!! | TTATATATTTTCTTTCTTCT+TGG | + | Chr5:60511940-60511959 | MsG0580027429.01.T01:CDS | 15.0% |
| !! | AAAACAAAAAACACATATAG+TGG | - | Chr5:60512489-60512508 | None:intergenic | 20.0% |
| !! | ACTAACAAAGAACATATTTA+TGG | + | Chr5:60512299-60512318 | MsG0580027429.01.T01:intron | 20.0% |
| !!! | ATTTCCAATAATTTTTTCAC+TGG | - | Chr5:60512078-60512097 | None:intergenic | 20.0% |
| !!! | TCATCTTTTCTTGATTTATT+TGG | + | Chr5:60512111-60512130 | MsG0580027429.01.T01:intron | 20.0% |
| ! | ATGAAACAATGATTCCTATT+TGG | - | Chr5:60512465-60512484 | None:intergenic | 25.0% |
| ! | ATGTCCAGTGAAAAAATTAT+TGG | + | Chr5:60512071-60512090 | MsG0580027429.01.T01:intron | 25.0% |
| ! | CAAATTTATTGTGATCTATG+AGG | + | Chr5:60512558-60512577 | MsG0580027429.01.T01:intron | 25.0% |
| ! | TCTTGATTTATTTGGTTGAT+TGG | + | Chr5:60512119-60512138 | MsG0580027429.01.T01:intron | 25.0% |
| ! | TTTGGTTAGAATAACCAAAT+AGG | + | Chr5:60512448-60512467 | MsG0580027429.01.T01:intron | 25.0% |
| !!! | TTTTTGTTTTGCTACATTGA+AGG | - | Chr5:60512173-60512192 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCCTTTTTTCCA+GGG | + | Chr5:60512630-60512649 | MsG0580027429.01.T01:intron | 25.0% |
| !!! | TTTTTTTCTTCCTTTTTTCC+AGG | + | Chr5:60512629-60512648 | MsG0580027429.01.T01:intron | 25.0% |
| AAATGAGTAAGACACACTTT+GGG | - | Chr5:60512201-60512220 | None:intergenic | 30.0% | |
| ATAAATAATTCCCCGGTATT+TGG | - | Chr5:60512716-60512735 | None:intergenic | 30.0% | |
| ATGTTCTTTGTTAGTCAACT+TGG | - | Chr5:60512294-60512313 | None:intergenic | 30.0% | |
| ATTCACCTGAAAGAAGAAAT+AGG | - | Chr5:60511845-60511864 | None:intergenic | 30.0% | |
| CAATATGTTTCATTTGTTCC+TGG | - | Chr5:60511777-60511796 | None:intergenic | 30.0% | |
| ! | AATTTTCATCGTTGTAACGA+TGG | + | Chr5:60512789-60512808 | MsG0580027429.01.T01:CDS | 30.0% |
| ! | TCTTCACTAGTGAATCATTT+TGG | + | Chr5:60512591-60512610 | MsG0580027429.01.T01:intron | 30.0% |
| ! | TTTTATCCGTTAATTGTGTG+AGG | - | Chr5:60512370-60512389 | None:intergenic | 30.0% |
| !!! | ACTCATTTTGGCTATAGATT+TGG | + | Chr5:60512430-60512449 | MsG0580027429.01.T01:intron | 30.0% |
| AAGTGTGTCTTACTCATTTC+AGG | + | Chr5:60512202-60512221 | MsG0580027429.01.T01:intron | 35.0% | |
| ACAATGCCTCACACAATTAA+CGG | + | Chr5:60512361-60512380 | MsG0580027429.01.T01:intron | 35.0% | |
| AGTGTGTCTTACTCATTTCA+GGG | + | Chr5:60512203-60512222 | MsG0580027429.01.T01:intron | 35.0% | |
| CTACTACATGTACTTCACAA+AGG | + | Chr5:60512825-60512844 | MsG0580027429.01.T01:CDS | 35.0% | |
| CTATAGCCAAAATGAGTGAA+GGG | - | Chr5:60512427-60512446 | None:intergenic | 35.0% | |
| GAAATGAGTAAGACACACTT+TGG | - | Chr5:60512202-60512221 | None:intergenic | 35.0% | |
| TACAACGATGAAAATTGCTC+CGG | - | Chr5:60512785-60512804 | None:intergenic | 35.0% | |
| TACTCATTTCAGGGTTCAAA+CGG | + | Chr5:60512212-60512231 | MsG0580027429.01.T01:intron | 35.0% | |
| TCTATAGCCAAAATGAGTGA+AGG | - | Chr5:60512428-60512447 | None:intergenic | 35.0% | |
| TCTGAGCATAAATAATTCCC+CGG | - | Chr5:60512723-60512742 | None:intergenic | 35.0% | |
| TTTATTCACACGAAGCTTCT+TGG | + | Chr5:60512507-60512526 | MsG0580027429.01.T01:intron | 35.0% | |
| ! | GCTTTCCTATTTCTTCTTTC+AGG | + | Chr5:60511837-60511856 | MsG0580027429.01.T01:CDS | 35.0% |
| !! | GGTTGATTGGTTTAAGTATG+TGG | + | Chr5:60512132-60512151 | MsG0580027429.01.T01:intron | 35.0% |
| ACTTCTCCTGTGAAAGTTTG+AGG | + | Chr5:60512743-60512762 | MsG0580027429.01.T01:CDS | 40.0% | |
| ACTTTCTCAGAAGACCAATC+GGG | + | Chr5:60512861-60512880 | MsG0580027429.01.T01:CDS | 40.0% | |
| AGAGCCAAACTAACGAACAA+AGG | + | Chr5:60512255-60512274 | MsG0580027429.01.T01:intron | 40.0% | |
| ATGCCTATCACACCAAATAC+CGG | + | Chr5:60512701-60512720 | MsG0580027429.01.T01:CDS | 40.0% | |
| CACTTTCTCAGAAGACCAAT+CGG | + | Chr5:60512860-60512879 | MsG0580027429.01.T01:CDS | 40.0% | |
| GCAGAATCATGCTTAATAGC+TGG | + | Chr5:60512667-60512686 | MsG0580027429.01.T01:CDS | 40.0% | |
| GTGTCCTTTGTTCGTTAGTT+TGG | - | Chr5:60512262-60512281 | None:intergenic | 40.0% | |
| TCAGGTGAATCACTGCTTAT+GGG | + | Chr5:60511855-60511874 | MsG0580027429.01.T01:CDS | 40.0% | |
| TCCTGTGAAAGTTTGAGGAA+AGG | + | Chr5:60512748-60512767 | MsG0580027429.01.T01:CDS | 40.0% | |
| TGACAAAGTGCATGTGCTTT+GGG | + | Chr5:60511880-60511899 | MsG0580027429.01.T01:CDS | 40.0% | |
| TGATTCTGCAACCAGAAAAG+TGG | - | Chr5:60512656-60512675 | None:intergenic | 40.0% | |
| TTCAGGTGAATCACTGCTTA+TGG | + | Chr5:60511854-60511873 | MsG0580027429.01.T01:CDS | 40.0% | |
| ! | ACACAACCCTTCACTCATTT+TGG | + | Chr5:60512418-60512437 | MsG0580027429.01.T01:intron | 40.0% |
| !! | AGGAAAGGCATCTTCATTAC+CGG | + | Chr5:60512763-60512782 | MsG0580027429.01.T01:CDS | 40.0% |
| AATCGTGGAACTAACCCGAT+TGG | - | Chr5:60512878-60512897 | None:intergenic | 45.0% | |
| AGTTCCACGATTGGAATGAC+CGG | + | Chr5:60512886-60512905 | MsG0580027429.01.T01:CDS | 45.0% | |
| GAAAAGTGGCCCTGGAAAAA+AGG | - | Chr5:60512642-60512661 | None:intergenic | 45.0% | |
| GCCTTTCCTCAAACTTTCAC+AGG | - | Chr5:60512752-60512771 | None:intergenic | 45.0% | |
| GTGACAAAGTGCATGTGCTT+TGG | + | Chr5:60511879-60511898 | MsG0580027429.01.T01:CDS | 45.0% | |
| TACAGTTCAGATGTCGCAAC+TGG | + | Chr5:60511801-60511820 | MsG0580027429.01.T01:CDS | 45.0% | |
| TCAGATGTCGCAACTGGTTA+TGG | + | Chr5:60511807-60511826 | MsG0580027429.01.T01:CDS | 45.0% | |
| TGCCTATCACACCAAATACC+GGG | + | Chr5:60512702-60512721 | MsG0580027429.01.T01:CDS | 45.0% | |
| TGTTCCTGGAGTTGTGTGAA+TGG | - | Chr5:60511763-60511782 | None:intergenic | 45.0% | |
| TTCATCTGAGCACGCTGATA+CGG | + | Chr5:60511998-60512017 | MsG0580027429.01.T01:intron | 45.0% | |
| ! | CTTCTGAGAAAGTGGAGTAG+TGG | - | Chr5:60512854-60512873 | None:intergenic | 45.0% |
| !! | AATCGGGTTAGTTCCACGAT+TGG | + | Chr5:60512877-60512896 | MsG0580027429.01.T01:CDS | 45.0% |
| !! | CGATTGGTCTTCTGAGAAAG+TGG | - | Chr5:60512862-60512881 | None:intergenic | 45.0% |
| !! | CGTTAGTTTGGCTCTCGAAT+GGG | - | Chr5:60512250-60512269 | None:intergenic | 45.0% |
| !! | TCGTTAGTTTGGCTCTCGAA+TGG | - | Chr5:60512251-60512270 | None:intergenic | 45.0% |
| !!! | TTTTTCCAGGGCCACTTTTC+TGG | + | Chr5:60512642-60512661 | MsG0580027429.01.T01:intron | 45.0% |
| ATGTCCGGTCATTCCAATCG+TGG | - | Chr5:60512893-60512912 | None:intergenic | 50.0% | |
| GCCTATCACACCAAATACCG+GGG | + | Chr5:60512703-60512722 | MsG0580027429.01.T01:CDS | 50.0% | |
| GGAACCATTCACACAACTCC+AGG | + | Chr5:60511756-60511775 | MsG0580027429.01.T01:CDS | 50.0% | |
| GTCGCAACTGGTTATGGAGT+GGG | + | Chr5:60511813-60511832 | MsG0580027429.01.T01:CDS | 50.0% | |
| TGTCGCAACTGGTTATGGAG+TGG | + | Chr5:60511812-60511831 | MsG0580027429.01.T01:CDS | 50.0% | |
| ! | CAAAGTGCATGTGCTTTGGG+AGG | + | Chr5:60511883-60511902 | MsG0580027429.01.T01:CDS | 50.0% |
| !! | TCCCCGGTATTTGGTGTGAT+AGG | - | Chr5:60512707-60512726 | None:intergenic | 50.0% |
| ACCAAGCTCGATTTCCCCCA+GGG | - | Chr5:60511917-60511936 | None:intergenic | 55.0% | |
| CGATTTCCCCCAGGGGTTAA+AGG | - | Chr5:60511909-60511928 | None:intergenic | 55.0% | |
| TGCAACCAGAAAAGTGGCCC+TGG | - | Chr5:60512650-60512669 | None:intergenic | 55.0% | |
| TTGGGAGGCCTTTAACCCCT+GGG | + | Chr5:60511898-60511917 | MsG0580027429.01.T01:CDS | 55.0% | |
| TTTGGGAGGCCTTTAACCCC+TGG | + | Chr5:60511897-60511916 | MsG0580027429.01.T01:CDS | 55.0% | |
| CCAAGCTCGATTTCCCCCAG+GGG | - | Chr5:60511916-60511935 | None:intergenic | 60.0% | |
| GACCAAGCTCGATTTCCCCC+AGG | - | Chr5:60511918-60511937 | None:intergenic | 60.0% | |
| TGGGAGGCCTTTAACCCCTG+GGG | + | Chr5:60511899-60511918 | MsG0580027429.01.T01:CDS | 60.0% | |
| CCCCTGGGGGAAATCGAGCT+TGG | + | Chr5:60511913-60511932 | MsG0580027429.01.T01:CDS | 65.0% | |
| GGGAGGCCTTTAACCCCTGG+GGG | + | Chr5:60511900-60511919 | MsG0580027429.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 60511750 | 60512918 | 60511750 | ID=MsG0580027429.01;Name=MsG0580027429.01 |
| Chr5 | mRNA | 60511750 | 60512918 | 60511750 | ID=MsG0580027429.01.T01;Parent=MsG0580027429.01;Name=MsG0580027429.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|159 |
| Chr5 | exon | 60511750 | 60511961 | 60511750 | ID=MsG0580027429.01.T01:exon:22348;Parent=MsG0580027429.01.T01 |
| Chr5 | CDS | 60511750 | 60511961 | 60511750 | ID=MsG0580027429.01.T01:cds;Parent=MsG0580027429.01.T01 |
| Chr5 | CDS | 60512651 | 60512918 | 60512651 | ID=MsG0580027429.01.T01:cds;Parent=MsG0580027429.01.T01 |
| Chr5 | mRNA | 60511873 | 60512918 | 60511873 | ID=MsG0580027429.01.T02;Parent=MsG0580027429.01;Name=MsG0580027429.01.T02;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|118 |
| Chr5 | exon | 60511873 | 60511961 | 60511873 | ID=MsG0580027429.01.T02:exon:22350;Parent=MsG0580027429.01.T02 |
| Chr5 | CDS | 60511873 | 60511961 | 60511873 | ID=MsG0580027429.01.T02:cds;Parent=MsG0580027429.01.T02 |
| Chr5 | CDS | 60512651 | 60512918 | 60512651 | ID=MsG0580027429.01.T02:cds;Parent=MsG0580027429.01.T02 |
| Chr5 | mRNA | 60511887 | 60512918 | 60511887 | ID=MsG0580027429.01.T03;Parent=MsG0580027429.01;Name=MsG0580027429.01.T03;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|114 |
| Chr5 | exon | 60511887 | 60511961 | 60511887 | ID=MsG0580027429.01.T03:exon:22351;Parent=MsG0580027429.01.T03 |
| Chr5 | exon | 60512649 | 60512918 | 60512649 | ID=MsG0580027429.01.T03:exon:22352;Parent=MsG0580027429.01.T03 |
| Chr5 | CDS | 60511887 | 60511961 | 60511887 | ID=MsG0580027429.01.T03:cds;Parent=MsG0580027429.01.T03 |
| Chr5 | CDS | 60512649 | 60512918 | 60512649 | ID=MsG0580027429.01.T03:cds;Parent=MsG0580027429.01.T03 |
| Gene Sequence |
| Protein sequence |
