Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027447.01.T01 | AES97702.1 | 86.982 | 338 | 41 | 2 | 1 | 336 | 1 | 337 | 1.72E-153 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027447.01.T01 | O22197 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 6.30E-13 | 72 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027447.01.T01 | G7K8T3 | 86.982 | 338 | 41 | 2 | 1 | 336 | 1 | 337 | 8.24e-154 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001486.01 | MsG0580027447.01 | 0.810609 | 1.058452e-50 | 6.409443e-48 |
| MsG0180005127.01 | MsG0580027447.01 | 0.829839 | 4.112123e-55 | 4.258959e-52 |
| MsG0180005146.01 | MsG0580027447.01 | 0.800269 | 1.559759e-48 | 7.231715e-46 |
| MsG0180006253.01 | MsG0580027447.01 | 0.821412 | 4.093151e-53 | 3.327605e-50 |
| MsG0580024994.01 | MsG0580027447.01 | 0.839300 | 1.720901e-57 | 2.366425e-54 |
| MsG0580025007.01 | MsG0580027447.01 | 0.827574 | 1.451488e-54 | 1.406663e-51 |
| MsG0580025024.01 | MsG0580027447.01 | 0.822461 | 2.339484e-53 | 1.959476e-50 |
| MsG0380016233.01 | MsG0580027447.01 | 0.832912 | 7.211900e-56 | 8.175269e-53 |
| MsG0380016458.01 | MsG0580027447.01 | 0.831285 | 1.820215e-55 | 1.966219e-52 |
| MsG0380017200.01 | MsG0580027447.01 | 0.825964 | 3.517424e-54 | 3.254604e-51 |
| MsG0580027447.01 | MsG0580027517.01 | 0.870446 | 1.450528e-66 | 5.644131e-63 |
| MsG0580027447.01 | MsG0580028916.01 | 0.800725 | 1.259451e-48 | 5.907156e-46 |
| MsG0580027447.01 | MsG0680032026.01 | 0.816815 | 4.552486e-52 | 3.259274e-49 |
| MsG0580027447.01 | MsG0680032461.01 | 0.810573 | 1.078020e-50 | 6.521342e-48 |
| MsG0580027447.01 | MsG0780036944.01 | 0.853254 | 2.697508e-61 | 5.792989e-58 |
| MsG0580027447.01 | MsG0780038399.01 | 0.800107 | 1.683142e-48 | 7.771518e-46 |
| MsG0580027447.01 | MsG0780040991.01 | 0.811258 | 7.660627e-51 | 4.719528e-48 |
| MsG0580027447.01 | MsG0880046403.01 | 0.806287 | 8.849694e-50 | 4.785003e-47 |
| MsG0580027447.01 | MsG0880046923.01 | 0.820387 | 7.047035e-53 | 5.568478e-50 |
| MsG0280009398.01 | MsG0580027447.01 | 0.816788 | 4.617242e-52 | 3.303168e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027447.01.T01 | MTR_5g058530 | 86.982 | 338 | 41 | 2 | 1 | 336 | 1 | 337 | 2.09e-157 | 444 |
| MsG0580027447.01.T01 | MTR_2g007340 | 43.421 | 76 | 42 | 1 | 208 | 283 | 187 | 261 | 9.61e-15 | 74.3 |
| MsG0580027447.01.T01 | MTR_5g088720 | 49.153 | 59 | 29 | 1 | 209 | 267 | 233 | 290 | 1.14e-14 | 74.7 |
| MsG0580027447.01.T01 | MTR_5g088720 | 49.153 | 59 | 29 | 1 | 209 | 267 | 187 | 244 | 1.15e-14 | 74.3 |
| MsG0580027447.01.T01 | MTR_5g088720 | 49.153 | 59 | 29 | 1 | 209 | 267 | 192 | 249 | 1.15e-14 | 74.3 |
| MsG0580027447.01.T01 | MTR_0067s0100 | 50.847 | 59 | 28 | 1 | 209 | 267 | 177 | 234 | 1.31e-14 | 73.6 |
| MsG0580027447.01.T01 | MTR_3g072630 | 49.153 | 59 | 29 | 1 | 209 | 267 | 208 | 265 | 1.07e-13 | 71.2 |
| MsG0580027447.01.T01 | MTR_1g051105 | 50.000 | 60 | 29 | 1 | 208 | 267 | 145 | 203 | 1.30e-13 | 70.1 |
| MsG0580027447.01.T01 | MTR_4g064570 | 36.792 | 106 | 62 | 3 | 166 | 267 | 121 | 225 | 1.42e-13 | 71.2 |
| MsG0580027447.01.T01 | MTR_3g072630 | 49.153 | 59 | 29 | 1 | 209 | 267 | 208 | 265 | 1.79e-13 | 70.9 |
| MsG0580027447.01.T01 | MTR_7g074170 | 31.737 | 167 | 82 | 5 | 114 | 267 | 242 | 389 | 4.09e-13 | 70.5 |
| MsG0580027447.01.T01 | MTR_6g079660 | 43.333 | 60 | 34 | 0 | 208 | 267 | 220 | 279 | 1.05e-12 | 68.6 |
| MsG0580027447.01.T01 | MTR_2g097620 | 30.189 | 106 | 69 | 2 | 166 | 267 | 129 | 233 | 3.01e-12 | 67.4 |
| MsG0580027447.01.T01 | MTR_5g080350 | 33.036 | 112 | 64 | 4 | 165 | 267 | 128 | 237 | 5.03e-12 | 66.6 |
| MsG0580027447.01.T01 | MTR_3g068005 | 47.458 | 59 | 30 | 1 | 209 | 267 | 183 | 240 | 1.73e-11 | 65.1 |
| MsG0580027447.01.T01 | MTR_5g041310 | 30.337 | 89 | 55 | 2 | 180 | 267 | 77 | 159 | 2.48e-11 | 63.2 |
| MsG0580027447.01.T01 | MTR_3g088080 | 48.936 | 47 | 24 | 0 | 218 | 264 | 33 | 79 | 5.90e-11 | 58.5 |
| MsG0580027447.01.T01 | MTR_6g032960 | 42.308 | 52 | 30 | 0 | 216 | 267 | 229 | 280 | 8.03e-11 | 62.8 |
| MsG0580027447.01.T01 | MTR_3g025510 | 52.381 | 42 | 20 | 0 | 223 | 264 | 105 | 146 | 8.25e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027447.01.T01 | AT1G60360 | 50.847 | 59 | 29 | 0 | 209 | 267 | 210 | 268 | 3.22e-15 | 75.9 |
| MsG0580027447.01.T01 | AT2G40830 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 6.42e-14 | 72.0 |
| MsG0580027447.01.T01 | AT2G40830 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 6.42e-14 | 72.0 |
| MsG0580027447.01.T01 | AT2G40830 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 6.42e-14 | 72.0 |
| MsG0580027447.01.T01 | AT2G40830 | 47.458 | 59 | 31 | 0 | 209 | 267 | 176 | 234 | 6.42e-14 | 72.0 |
| MsG0580027447.01.T01 | AT3G56580 | 49.153 | 59 | 30 | 0 | 209 | 267 | 172 | 230 | 1.00e-13 | 71.2 |
| MsG0580027447.01.T01 | AT3G56580 | 49.153 | 59 | 30 | 0 | 209 | 267 | 172 | 230 | 1.00e-13 | 71.2 |
| MsG0580027447.01.T01 | AT3G56580 | 49.153 | 59 | 30 | 0 | 209 | 267 | 172 | 230 | 1.00e-13 | 71.2 |
| MsG0580027447.01.T01 | AT3G19950 | 44.068 | 59 | 33 | 0 | 209 | 267 | 202 | 260 | 2.39e-13 | 70.5 |
| MsG0580027447.01.T01 | AT3G19950 | 44.068 | 59 | 33 | 0 | 209 | 267 | 260 | 318 | 2.87e-13 | 70.5 |
| MsG0580027447.01.T01 | AT3G19950 | 44.068 | 59 | 33 | 0 | 209 | 267 | 260 | 318 | 2.87e-13 | 70.5 |
| MsG0580027447.01.T01 | AT5G08139 | 36.047 | 86 | 35 | 2 | 182 | 267 | 288 | 353 | 8.19e-12 | 66.2 |
| MsG0580027447.01.T01 | AT3G10815 | 49.153 | 59 | 29 | 1 | 209 | 267 | 108 | 165 | 1.01e-11 | 63.9 |
| MsG0580027447.01.T01 | AT1G68180 | 38.806 | 67 | 37 | 1 | 223 | 289 | 138 | 200 | 3.41e-11 | 62.8 |
| MsG0580027447.01.T01 | AT1G18770 | 39.062 | 64 | 39 | 0 | 204 | 267 | 40 | 103 | 6.00e-11 | 59.3 |
| MsG0580027447.01.T01 | AT5G60820 | 48.000 | 50 | 26 | 0 | 218 | 267 | 367 | 416 | 7.56e-11 | 63.2 |
Find 93 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTGATTGATTCGAGGTTC+TGG | 0.138358 | 5:+61067182 | None:intergenic |
| CTCCAGTTGATTCGAGGTTC+TGG | 0.242316 | 5:+61067119 | None:intergenic |
| GGACAAAGCCAGTCGATTTC+AGG | 0.279931 | 5:+61067290 | None:intergenic |
| GCAAAACCTGTCCTGTTTGC+AGG | 0.299759 | 5:-61066713 | MsG0580027447.01.T01:CDS |
| AATCCGGAGAAGATTGAAAA+AGG | 0.308182 | 5:+61066577 | None:intergenic |
| TTGATTCGAGGTTCTGGATT+TGG | 0.317733 | 5:+61067125 | None:intergenic |
| GTTTGCAGGCTTCAGTTAGA+TGG | 0.336723 | 5:-61066699 | MsG0580027447.01.T01:CDS |
| ACTTGATGACGACGAGAGTT+TGG | 0.338571 | 5:-61066646 | MsG0580027447.01.T01:CDS |
| GAACTTGTATGTATGTTTGC+AGG | 0.345043 | 5:+61066764 | None:intergenic |
| ACCTTGGGGATTGTTGGCTT+TGG | 0.358255 | 5:+61067465 | None:intergenic |
| GCTGATTGATTCGAGGTTCT+GGG | 0.373405 | 5:+61067183 | None:intergenic |
| ATCACTATCACCGCGGAATC+CGG | 0.379126 | 5:-61067315 | MsG0580027447.01.T01:CDS |
| AGCATAGCTTATACCACCTT+GGG | 0.385612 | 5:+61067450 | None:intergenic |
| TTAAACTCCTCCATGCAAAT+AGG | 0.393063 | 5:+61066813 | None:intergenic |
| GGTAATGGCGGCGGTGGTGG+TGG | 0.397923 | 5:+61066984 | None:intergenic |
| GGTGGTAATGGCGGCGGTGG+TGG | 0.401060 | 5:+61066981 | None:intergenic |
| TATACCACCTTGGGGATTGT+TGG | 0.405572 | 5:+61067459 | None:intergenic |
| GGAAGTGGAGGAGGTGGTGG+TGG | 0.414751 | 5:+61067269 | None:intergenic |
| GTTACTTGTGGTGGAATTTG+AGG | 0.420118 | 5:+61066615 | None:intergenic |
| ATTATCACCACTAGAATTCC+CGG | 0.426721 | 5:-61067048 | MsG0580027447.01.T01:CDS |
| CGGCCATGCGTGGTCAAAGA+AGG | 0.432038 | 5:+61066924 | None:intergenic |
| ATCCAGAACCTCGAATCAAC+TGG | 0.432042 | 5:-61067121 | MsG0580027447.01.T01:CDS |
| ATAGGAAGTGGAGGAGGTGG+TGG | 0.446590 | 5:+61067266 | None:intergenic |
| CTTCTTTGACCACGCATGGC+CGG | 0.448017 | 5:-61066923 | MsG0580027447.01.T01:CDS |
| GGGATTGTTGGCTTTGGCCA+TGG | 0.452073 | 5:+61067471 | None:intergenic |
| TCTGAACTGTCACCACTTGT+TGG | 0.452240 | 5:+61067422 | None:intergenic |
| TGAGGTGGTAATGGCGGCGG+TGG | 0.461768 | 5:+61066978 | None:intergenic |
| AGCCAGTCGATTTCAGGATC+CGG | 0.465327 | 5:+61067296 | None:intergenic |
| CATGGATCTTGAGGTGGTAA+TGG | 0.467118 | 5:+61066969 | None:intergenic |
| CTCTCACTGTCCTATTTGCA+TGG | 0.476232 | 5:-61066823 | MsG0580027447.01.T01:CDS |
| CGAGGTTCTGAGTTTGAAGC+CGG | 0.481121 | 5:+61067029 | None:intergenic |
| TCTAACTGAAGCCTGCAAAC+AGG | 0.486588 | 5:+61066702 | None:intergenic |
| TGCATGGAGGAGTTTAAACT+TGG | 0.488814 | 5:-61066807 | MsG0580027447.01.T01:CDS |
| GAAGACCGCTGATTGATTCG+AGG | 0.492643 | 5:+61067176 | None:intergenic |
| GTGGTGGAATTTGAGGTTCA+AGG | 0.492705 | 5:+61066622 | None:intergenic |
| CTAGTTTGAGTTGCAGTACT+CGG | 0.492845 | 5:+61067368 | None:intergenic |
| AGTTCGAATGCATTCTTCGT+TGG | 0.502198 | 5:-61066746 | MsG0580027447.01.T01:CDS |
| TCTTCTGTAACATGAGAATC+CGG | 0.503349 | 5:+61066561 | None:intergenic |
| TGACTATGATCATCGTCATC+AGG | 0.503789 | 5:+61066900 | None:intergenic |
| TTCCCTTCTTTGACCACGCA+TGG | 0.504178 | 5:-61066927 | MsG0580027447.01.T01:CDS |
| GGTGATAATGTTGGTGATGG+TGG | 0.513955 | 5:+61067062 | None:intergenic |
| AGTGATGGATGTGGCGGAGA+AGG | 0.515249 | 5:+61067332 | None:intergenic |
| AACTTGTATGTATGTTTGCA+GGG | 0.516610 | 5:+61066765 | None:intergenic |
| AGAGAACTCCAGTTGATTCG+AGG | 0.517501 | 5:+61067113 | None:intergenic |
| TTGGCCATGGTTCATTGACA+TGG | 0.519296 | 5:+61067484 | None:intergenic |
| AAGGCGGTGGTGGCGGTGGT+AGG | 0.525691 | 5:+61067090 | None:intergenic |
| CTGCAACTCAAACTAGTACA+TGG | 0.527248 | 5:-61067361 | MsG0580027447.01.T01:CDS |
| GACAGTGCCTGTGATGAGTT+AGG | 0.527644 | 5:-61066504 | MsG0580027447.01.T01:CDS |
| AAGCATAGCTTATACCACCT+TGG | 0.528619 | 5:+61067449 | None:intergenic |
| CATTACCACCTCAAGATCCA+TGG | 0.529230 | 5:-61066968 | MsG0580027447.01.T01:CDS |
| CTGAAGCCTGCAAACAGGAC+AGG | 0.533487 | 5:+61066707 | None:intergenic |
| AGTGGTGATAATGTTGGTGA+TGG | 0.535792 | 5:+61067059 | None:intergenic |
| TGCAAACTATTAGTTACTTG+TGG | 0.536216 | 5:+61066603 | None:intergenic |
| ATCCGGATCCTGAAATCGAC+TGG | 0.537087 | 5:-61067298 | MsG0580027447.01.T01:CDS |
| AAAATAGGAAGTGGAGGAGG+TGG | 0.549842 | 5:+61067263 | None:intergenic |
| AAACTATTAGTTACTTGTGG+TGG | 0.567054 | 5:+61066606 | None:intergenic |
| TATGATCATCGTCATCAGGC+CGG | 0.568771 | 5:+61066904 | None:intergenic |
| ACAGTTTGAAATTGTAGTGG+TGG | 0.569682 | 5:+61067209 | None:intergenic |
| GTCATCAGGCCGGCCATGCG+TGG | 0.574007 | 5:+61066914 | None:intergenic |
| GTGATAATGTTGGTGATGGT+GGG | 0.574291 | 5:+61067063 | None:intergenic |
| CATGTTACAGAAGATGATGC+AGG | 0.577700 | 5:-61066552 | MsG0580027447.01.T01:CDS |
| ATTCGAGGTTCTGGATTTGG+TGG | 0.583082 | 5:+61067128 | None:intergenic |
| GGCCATGCGTGGTCAAAGAA+GGG | 0.588446 | 5:+61066925 | None:intergenic |
| TCTTGAGGTGGTAATGGCGG+CGG | 0.591888 | 5:+61066975 | None:intergenic |
| AAGCGATCCCATGGATCTTG+AGG | 0.594977 | 5:+61066960 | None:intergenic |
| GGATTCCGCGGTGATAGTGA+TGG | 0.595675 | 5:+61067317 | None:intergenic |
| TTTACAGTTTGAAATTGTAG+TGG | 0.596438 | 5:+61067206 | None:intergenic |
| TTTGAAGCCGGGAATTCTAG+TGG | 0.599544 | 5:+61067041 | None:intergenic |
| GTATTAATGAAGCGATCCCA+TGG | 0.600266 | 5:+61066951 | None:intergenic |
| GTGGTGGTATTGAATACTGC+AGG | 0.605509 | 5:+61067000 | None:intergenic |
| TGCAGGGTAACTGACATGCT+TGG | 0.609256 | 5:+61066781 | None:intergenic |
| ATACCAACCTAACTCATCAC+AGG | 0.611083 | 5:+61066497 | None:intergenic |
| ATTACCACCTCAAGATCCAT+GGG | 0.614510 | 5:-61066967 | MsG0580027447.01.T01:CDS |
| GAGGTTCTGAGTTTGAAGCC+GGG | 0.616960 | 5:+61067030 | None:intergenic |
| GGTTGTGATGACAGCAGCGA+TGG | 0.617371 | 5:+61067149 | None:intergenic |
| GGATCTTGAGGTGGTAATGG+CGG | 0.624536 | 5:+61066972 | None:intergenic |
| GTGCCTGTGATGAGTTAGGT+TGG | 0.629237 | 5:-61066500 | MsG0580027447.01.T01:CDS |
| AATTCTAGTGGTGATAATGT+TGG | 0.629591 | 5:+61067053 | None:intergenic |
| CGATCCCATGGATCTTGAGG+TGG | 0.635333 | 5:+61066963 | None:intergenic |
| CGCGGTGATAGTGATGGATG+TGG | 0.637131 | 5:+61067323 | None:intergenic |
| CTATGCTTTATACCAACAAG+TGG | 0.639520 | 5:-61067434 | MsG0580027447.01.T01:CDS |
| GCCAAAGCCAACAATCCCCA+AGG | 0.648809 | 5:-61067466 | MsG0580027447.01.T01:CDS |
| ATTTCAGGATCCGGATTCCG+CGG | 0.649119 | 5:+61067305 | None:intergenic |
| TCAGTTCCTTCGAAGTCACA+TGG | 0.668668 | 5:-61066880 | MsG0580027447.01.T01:CDS |
| TCACTGTCCTATTTGCATGG+AGG | 0.677527 | 5:-61066820 | MsG0580027447.01.T01:CDS |
| GCATAGCTTATACCACCTTG+GGG | 0.690365 | 5:+61067451 | None:intergenic |
| GATCGTACTGATAGTCGTGA+TGG | 0.692783 | 5:+61067236 | None:intergenic |
| ATAGCCATGTCAATGAACCA+TGG | 0.703067 | 5:-61067488 | None:intergenic |
| AAAGCCAACAATCCCCAAGG+TGG | 0.707176 | 5:-61067463 | MsG0580027447.01.T01:CDS |
| GAATACTGCAGGTTAATACG+AGG | 0.712015 | 5:+61067011 | None:intergenic |
| CAGAACCTCGAATCAATCAG+CGG | 0.725274 | 5:-61067181 | MsG0580027447.01.T01:CDS |
| GGTGATAGTGATGGATGTGG+CGG | 0.741036 | 5:+61067326 | None:intergenic |
| CACATCCATCACTATCACCG+CGG | 0.756606 | 5:-61067322 | MsG0580027447.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACAGTTTGAAATTGTAG+TGG | + | Chr5:61066773-61066792 | None:intergenic | 25.0% |
| AAACTATTAGTTACTTGTGG+TGG | + | Chr5:61067373-61067392 | None:intergenic | 30.0% | |
| AACTTGTATGTATGTTTGCA+GGG | + | Chr5:61067214-61067233 | None:intergenic | 30.0% | |
| TGCAAACTATTAGTTACTTG+TGG | + | Chr5:61067376-61067395 | None:intergenic | 30.0% | |
| ! | AATTCTAGTGGTGATAATGT+TGG | + | Chr5:61066926-61066945 | None:intergenic | 30.0% |
| !!! | AAACCTTTTTCAATCTTCTC+CGG | - | Chr5:61067396-61067415 | MsG0580027447.01.T01:CDS | 30.0% |
| AATCCGGAGAAGATTGAAAA+AGG | + | Chr5:61067402-61067421 | None:intergenic | 35.0% | |
| ATTATCACCACTAGAATTCC+CGG | - | Chr5:61066928-61066947 | MsG0580027447.01.T01:CDS | 35.0% | |
| CTATGCTTTATACCAACAAG+TGG | - | Chr5:61066542-61066561 | MsG0580027447.01.T01:CDS | 35.0% | |
| GAACTTGTATGTATGTTTGC+AGG | + | Chr5:61067215-61067234 | None:intergenic | 35.0% | |
| GATGGTGTAAAAATAGGAAG+TGG | + | Chr5:61066725-61066744 | None:intergenic | 35.0% | |
| TCTTCTGTAACATGAGAATC+CGG | + | Chr5:61067418-61067437 | None:intergenic | 35.0% | |
| TTAAACTCCTCCATGCAAAT+AGG | + | Chr5:61067166-61067185 | None:intergenic | 35.0% | |
| ! | ACAGTTTGAAATTGTAGTGG+TGG | + | Chr5:61066770-61066789 | None:intergenic | 35.0% |
| ! | AGTCGTGATGGTGTAAAAAT+AGG | + | Chr5:61066731-61066750 | None:intergenic | 35.0% |
| !!! | CTTCAGTTAGATGGTTTTGA+AGG | - | Chr5:61067286-61067305 | MsG0580027447.01.T01:CDS | 35.0% |
| !!! | TTAGATGGTTTTGAAGGACA+GGG | - | Chr5:61067292-61067311 | MsG0580027447.01.T01:CDS | 35.0% |
| AAGCATAGCTTATACCACCT+TGG | + | Chr5:61066530-61066549 | None:intergenic | 40.0% | |
| AGCATAGCTTATACCACCTT+GGG | + | Chr5:61066529-61066548 | None:intergenic | 40.0% | |
| AGTTCGAATGCATTCTTCGT+TGG | - | Chr5:61067230-61067249 | MsG0580027447.01.T01:CDS | 40.0% | |
| ATACCAACCTAACTCATCAC+AGG | + | Chr5:61067482-61067501 | None:intergenic | 40.0% | |
| ATTACCACCTCAAGATCCAT+GGG | - | Chr5:61067009-61067028 | MsG0580027447.01.T01:CDS | 40.0% | |
| CATGTTACAGAAGATGATGC+AGG | - | Chr5:61067424-61067443 | MsG0580027447.01.T01:CDS | 40.0% | |
| CTGCAACTCAAACTAGTACA+TGG | - | Chr5:61066615-61066634 | MsG0580027447.01.T01:CDS | 40.0% | |
| GAATACTGCAGGTTAATACG+AGG | + | Chr5:61066968-61066987 | None:intergenic | 40.0% | |
| GGTGTAAAAATAGGAAGTGG+AGG | + | Chr5:61066722-61066741 | None:intergenic | 40.0% | |
| GTAAAAATAGGAAGTGGAGG+AGG | + | Chr5:61066719-61066738 | None:intergenic | 40.0% | |
| GTATTAATGAAGCGATCCCA+TGG | + | Chr5:61067028-61067047 | None:intergenic | 40.0% | |
| TGACTATGATCATCGTCATC+AGG | + | Chr5:61067079-61067098 | None:intergenic | 40.0% | |
| TGCATGGAGGAGTTTAAACT+TGG | - | Chr5:61067169-61067188 | MsG0580027447.01.T01:CDS | 40.0% | |
| ! | AGTGGTGATAATGTTGGTGA+TGG | + | Chr5:61066920-61066939 | None:intergenic | 40.0% |
| ! | GTTACTTGTGGTGGAATTTG+AGG | + | Chr5:61067364-61067383 | None:intergenic | 40.0% |
| ! | TTTTCACCATGTGACTTCGA+AGG | + | Chr5:61067105-61067124 | None:intergenic | 40.0% |
| !! | CTAGTTTGAGTTGCAGTACT+CGG | + | Chr5:61066611-61066630 | None:intergenic | 40.0% |
| !! | GTGATAATGTTGGTGATGGT+GGG | + | Chr5:61066916-61066935 | None:intergenic | 40.0% |
| !! | TTGATTCGAGGTTCTGGATT+TGG | + | Chr5:61066854-61066873 | None:intergenic | 40.0% |
| !!! | GTTAGATGGTTTTGAAGGAC+AGG | - | Chr5:61067291-61067310 | MsG0580027447.01.T01:CDS | 40.0% |
| AAAATAGGAAGTGGAGGAGG+TGG | + | Chr5:61066716-61066735 | None:intergenic | 45.0% | |
| ATCCAGAACCTCGAATCAAC+TGG | - | Chr5:61066855-61066874 | MsG0580027447.01.T01:CDS | 45.0% | |
| CAGAACCTCGAATCAATCAG+CGG | - | Chr5:61066795-61066814 | MsG0580027447.01.T01:CDS | 45.0% | |
| CATGGATCTTGAGGTGGTAA+TGG | + | Chr5:61067010-61067029 | None:intergenic | 45.0% | |
| CATTACCACCTCAAGATCCA+TGG | - | Chr5:61067008-61067027 | MsG0580027447.01.T01:CDS | 45.0% | |
| CTCTCACTGTCCTATTTGCA+TGG | - | Chr5:61067153-61067172 | MsG0580027447.01.T01:CDS | 45.0% | |
| GCATAGCTTATACCACCTTG+GGG | + | Chr5:61066528-61066547 | None:intergenic | 45.0% | |
| GTTTGCAGGCTTCAGTTAGA+TGG | - | Chr5:61067277-61067296 | MsG0580027447.01.T01:CDS | 45.0% | |
| TATACCACCTTGGGGATTGT+TGG | + | Chr5:61066520-61066539 | None:intergenic | 45.0% | |
| TATGATCATCGTCATCAGGC+CGG | + | Chr5:61067075-61067094 | None:intergenic | 45.0% | |
| TCACTGTCCTATTTGCATGG+AGG | - | Chr5:61067156-61067175 | MsG0580027447.01.T01:CDS | 45.0% | |
| TCAGTTCCTTCGAAGTCACA+TGG | - | Chr5:61067096-61067115 | MsG0580027447.01.T01:CDS | 45.0% | |
| TCTAACTGAAGCCTGCAAAC+AGG | + | Chr5:61067277-61067296 | None:intergenic | 45.0% | |
| TCTGAACTGTCACCACTTGT+TGG | + | Chr5:61066557-61066576 | None:intergenic | 45.0% | |
| ! | GATCGTACTGATAGTCGTGA+TGG | + | Chr5:61066743-61066762 | None:intergenic | 45.0% |
| ! | GTGGTGGAATTTGAGGTTCA+AGG | + | Chr5:61067357-61067376 | None:intergenic | 45.0% |
| ! | GTGGTGGTATTGAATACTGC+AGG | + | Chr5:61066979-61066998 | None:intergenic | 45.0% |
| ! | TTTGAAGCCGGGAATTCTAG+TGG | + | Chr5:61066938-61066957 | None:intergenic | 45.0% |
| !! | ACTTGATGACGACGAGAGTT+TGG | - | Chr5:61067330-61067349 | MsG0580027447.01.T01:CDS | 45.0% |
| !! | AGAGAACTCCAGTTGATTCG+AGG | + | Chr5:61066866-61066885 | None:intergenic | 45.0% |
| !! | ATTCGAGGTTCTGGATTTGG+TGG | + | Chr5:61066851-61066870 | None:intergenic | 45.0% |
| !! | GCTGATTGATTCGAGGTTCT+GGG | + | Chr5:61066796-61066815 | None:intergenic | 45.0% |
| !! | GGTGATAATGTTGGTGATGG+TGG | + | Chr5:61066917-61066936 | None:intergenic | 45.0% |
| !! | GTTGGTGATGGTGGGAAAAA+AGG | + | Chr5:61066908-61066927 | None:intergenic | 45.0% |
| AAAGCCAACAATCCCCAAGG+TGG | - | Chr5:61066513-61066532 | MsG0580027447.01.T01:CDS | 50.0% | |
| AAGCGATCCCATGGATCTTG+AGG | + | Chr5:61067019-61067038 | None:intergenic | 50.0% | |
| ATCACTATCACCGCGGAATC+CGG | - | Chr5:61066661-61066680 | MsG0580027447.01.T01:CDS | 50.0% | |
| ATCCGGATCCTGAAATCGAC+TGG | - | Chr5:61066678-61066697 | MsG0580027447.01.T01:CDS | 50.0% | |
| ATTTCAGGATCCGGATTCCG+CGG | + | Chr5:61066674-61066693 | None:intergenic | 50.0% | |
| CACATCCATCACTATCACCG+CGG | - | Chr5:61066654-61066673 | MsG0580027447.01.T01:CDS | 50.0% | |
| GACAGTGCCTGTGATGAGTT+AGG | - | Chr5:61067472-61067491 | MsG0580027447.01.T01:CDS | 50.0% | |
| GCAAAACCTGTCCTGTTTGC+AGG | - | Chr5:61067263-61067282 | MsG0580027447.01.T01:CDS | 50.0% | |
| GTGCCTGTGATGAGTTAGGT+TGG | - | Chr5:61067476-61067495 | MsG0580027447.01.T01:CDS | 50.0% | |
| TGCAGGGTAACTGACATGCT+TGG | + | Chr5:61067198-61067217 | None:intergenic | 50.0% | |
| TTCCCTTCTTTGACCACGCA+TGG | - | Chr5:61067049-61067068 | MsG0580027447.01.T01:CDS | 50.0% | |
| ! | AGCCAGTCGATTTCAGGATC+CGG | + | Chr5:61066683-61066702 | None:intergenic | 50.0% |
| ! | GCAAACAGGACAGGTTTTGC+TGG | + | Chr5:61067263-61067282 | None:intergenic | 50.0% |
| ! | GGACAAAGCCAGTCGATTTC+AGG | + | Chr5:61066689-61066708 | None:intergenic | 50.0% |
| !! | ACCTTGGGGATTGTTGGCTT+TGG | + | Chr5:61066514-61066533 | None:intergenic | 50.0% |
| !! | CGAGGTTCTGAGTTTGAAGC+CGG | + | Chr5:61066950-61066969 | None:intergenic | 50.0% |
| !! | CGCTGATTGATTCGAGGTTC+TGG | + | Chr5:61066797-61066816 | None:intergenic | 50.0% |
| !! | CTCCAGTTGATTCGAGGTTC+TGG | + | Chr5:61066860-61066879 | None:intergenic | 50.0% |
| !! | GAAGACCGCTGATTGATTCG+AGG | + | Chr5:61066803-61066822 | None:intergenic | 50.0% |
| !! | GAGGTTCTGAGTTTGAAGCC+GGG | + | Chr5:61066949-61066968 | None:intergenic | 50.0% |
| !! | GGATCTTGAGGTGGTAATGG+CGG | + | Chr5:61067007-61067026 | None:intergenic | 50.0% |
| !! | GGTGATAGTGATGGATGTGG+CGG | + | Chr5:61066653-61066672 | None:intergenic | 50.0% |
| !! | GGTGATGGTGGGAAAAAAGG+CGG | + | Chr5:61066905-61066924 | None:intergenic | 50.0% |
| ATAGGAAGTGGAGGAGGTGG+TGG | + | Chr5:61066713-61066732 | None:intergenic | 55.0% | |
| CGATCCCATGGATCTTGAGG+TGG | + | Chr5:61067016-61067035 | None:intergenic | 55.0% | |
| CTGAAGCCTGCAAACAGGAC+AGG | + | Chr5:61067272-61067291 | None:intergenic | 55.0% | |
| CTTCTTTGACCACGCATGGC+CGG | - | Chr5:61067053-61067072 | MsG0580027447.01.T01:CDS | 55.0% | |
| GCCAAAGCCAACAATCCCCA+AGG | - | Chr5:61066510-61066529 | MsG0580027447.01.T01:CDS | 55.0% | |
| GGCCATGCGTGGTCAAAGAA+GGG | + | Chr5:61067054-61067073 | None:intergenic | 55.0% | |
| GGTTGTGATGACAGCAGCGA+TGG | + | Chr5:61066830-61066849 | None:intergenic | 55.0% | |
| ! | GGATTCCGCGGTGATAGTGA+TGG | + | Chr5:61066662-61066681 | None:intergenic | 55.0% |
| !! | AGTGATGGATGTGGCGGAGA+AGG | + | Chr5:61066647-61066666 | None:intergenic | 55.0% |
| !! | CGCGGTGATAGTGATGGATG+TGG | + | Chr5:61066656-61066675 | None:intergenic | 55.0% |
| !! | GATGGTGGGAAAAAAGGCGG+TGG | + | Chr5:61066902-61066921 | None:intergenic | 55.0% |
| !! | GGGATTGTTGGCTTTGGCCA+TGG | + | Chr5:61066508-61066527 | None:intergenic | 55.0% |
| !! | TCTTGAGGTGGTAATGGCGG+CGG | + | Chr5:61067004-61067023 | None:intergenic | 55.0% |
| CGGCCATGCGTGGTCAAAGA+AGG | + | Chr5:61067055-61067074 | None:intergenic | 60.0% | |
| GGTGGGAAAAAAGGCGGTGG+TGG | + | Chr5:61066899-61066918 | None:intergenic | 60.0% | |
| ! | GGGAAAAAAGGCGGTGGTGG+CGG | + | Chr5:61066896-61066915 | None:intergenic | 60.0% |
| !! | AAAAAAGGCGGTGGTGGCGG+TGG | + | Chr5:61066893-61066912 | None:intergenic | 60.0% |
| ! | GGAAGTGGAGGAGGTGGTGG+TGG | + | Chr5:61066710-61066729 | None:intergenic | 65.0% |
| !! | TGAGGTGGTAATGGCGGCGG+TGG | + | Chr5:61067001-61067020 | None:intergenic | 65.0% |
| GTCATCAGGCCGGCCATGCG+TGG | + | Chr5:61067065-61067084 | None:intergenic | 70.0% | |
| ! | GGTAATGGCGGCGGTGGTGG+TGG | + | Chr5:61066995-61067014 | None:intergenic | 70.0% |
| !! | AAGGCGGTGGTGGCGGTGGT+AGG | + | Chr5:61066889-61066908 | None:intergenic | 70.0% |
| !! | GGTGGTAATGGCGGCGGTGG+TGG | + | Chr5:61066998-61067017 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 61066494 | 61067504 | 61066494 | ID=MsG0580027447.01;Name=MsG0580027447.01 |
| Chr5 | mRNA | 61066494 | 61067504 | 61066494 | ID=MsG0580027447.01.T01;Parent=MsG0580027447.01;Name=MsG0580027447.01.T01;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|336 |
| Chr5 | exon | 61066494 | 61067504 | 61066494 | ID=MsG0580027447.01.T01:exon:13490;Parent=MsG0580027447.01.T01 |
| Chr5 | CDS | 61066494 | 61067504 | 61066494 | ID=MsG0580027447.01.T01:cds;Parent=MsG0580027447.01.T01 |
| Gene Sequence |
| Protein sequence |
