Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028264.01.T02 | AAL84187.1 | 87.356 | 174 | 20 | 1 | 5 | 176 | 1 | 174 | 1.47E-102 | 302 |
| MsG0580028264.01.T03 | AAL84187.1 | 87.356 | 174 | 20 | 1 | 1 | 172 | 1 | 174 | 1.62E-102 | 302 |
| MsG0580028264.01.T01 | AAL84187.1 | 87.356 | 174 | 20 | 1 | 46 | 217 | 1 | 174 | 3.69E-102 | 303 |
| MsG0580028264.01.T04 | AAL84187.1 | 86.154 | 130 | 16 | 1 | 1 | 128 | 45 | 174 | 6.46E-71 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028264.01.T01 | Q8S4Q1 | 87.356 | 174 | 20 | 1 | 46 | 217 | 1 | 174 | 1.76e-102 | 303 |
| MsG0580028264.01.T02 | Q8S4Q1 | 87.356 | 174 | 20 | 1 | 5 | 176 | 1 | 174 | 7.00e-103 | 302 |
| MsG0580028264.01.T03 | Q8S4Q1 | 87.356 | 174 | 20 | 1 | 1 | 172 | 1 | 174 | 7.75e-103 | 302 |
| MsG0580028264.01.T04 | Q8S4Q1 | 86.154 | 130 | 16 | 1 | 1 | 128 | 45 | 174 | 3.09e-71 | 220 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480018276.01 | MsG0580028264.01 | 0.823010 | 1.743481e-53 | 1.483243e-50 |
| MsG0480018277.01 | MsG0580028264.01 | 0.852335 | 4.937814e-61 | 1.028428e-57 |
| MsG0580028264.01 | MsG0780038885.01 | 0.842577 | 2.375999e-58 | 3.618176e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028264.01.T02 | MTR_3g030260 | 64.894 | 188 | 54 | 3 | 1 | 176 | 42 | 229 | 1.20e-75 | 226 |
| MsG0580028264.01.T02 | MTR_2g009950 | 62.903 | 186 | 57 | 3 | 1 | 174 | 42 | 227 | 7.09e-70 | 213 |
| MsG0580028264.01.T02 | MTR_6g033455 | 59.474 | 190 | 63 | 4 | 1 | 176 | 42 | 231 | 3.01e-63 | 194 |
| MsG0580028264.01.T02 | MTR_0510s0010 | 57.895 | 190 | 66 | 4 | 1 | 176 | 49 | 238 | 1.18e-58 | 183 |
| MsG0580028264.01.T02 | MTR_7g016020 | 59.211 | 152 | 50 | 3 | 1 | 140 | 42 | 193 | 2.87e-43 | 147 |
| MsG0580028264.01.T02 | MTR_7g045350 | 62.774 | 137 | 39 | 3 | 51 | 175 | 23 | 159 | 4.16e-43 | 141 |
| MsG0580028264.01.T02 | MTR_2g083020 | 59.868 | 152 | 49 | 4 | 1 | 140 | 42 | 193 | 9.29e-42 | 149 |
| MsG0580028264.01.T02 | MTR_8g461570 | 78.378 | 74 | 15 | 1 | 104 | 176 | 5 | 78 | 1.37e-33 | 114 |
| MsG0580028264.01.T02 | MTR_0012s0290 | 64.228 | 123 | 32 | 3 | 51 | 161 | 1147 | 1269 | 8.36e-33 | 123 |
| MsG0580028264.01.T02 | MTR_7g074720 | 80.822 | 73 | 13 | 1 | 105 | 176 | 2 | 74 | 1.72e-32 | 111 |
| MsG0580028264.01.T02 | MTR_0053s0080 | 51.678 | 149 | 59 | 3 | 1 | 136 | 42 | 190 | 4.16e-27 | 105 |
| MsG0580028264.01.T02 | MTR_5g454260 | 66.667 | 75 | 25 | 0 | 1 | 75 | 42 | 116 | 6.48e-24 | 94.4 |
| MsG0580028264.01.T02 | MTR_3g026190 | 48.598 | 107 | 50 | 2 | 25 | 126 | 825 | 931 | 7.50e-16 | 74.7 |
| MsG0580028264.01.T03 | MTR_3g030260 | 64.130 | 184 | 54 | 3 | 1 | 172 | 46 | 229 | 9.47e-73 | 218 |
| MsG0580028264.01.T03 | MTR_2g009950 | 62.088 | 182 | 57 | 3 | 1 | 170 | 46 | 227 | 5.71e-67 | 206 |
| MsG0580028264.01.T03 | MTR_6g033455 | 58.602 | 186 | 63 | 4 | 1 | 172 | 46 | 231 | 3.80e-60 | 187 |
| MsG0580028264.01.T03 | MTR_0510s0010 | 56.989 | 186 | 66 | 4 | 1 | 172 | 53 | 238 | 1.15e-55 | 176 |
| MsG0580028264.01.T03 | MTR_7g045350 | 62.774 | 137 | 39 | 3 | 47 | 171 | 23 | 159 | 4.74e-43 | 140 |
| MsG0580028264.01.T03 | MTR_7g016020 | 58.108 | 148 | 50 | 3 | 1 | 136 | 46 | 193 | 1.68e-40 | 140 |
| MsG0580028264.01.T03 | MTR_2g083020 | 58.784 | 148 | 49 | 4 | 1 | 136 | 46 | 193 | 3.33e-39 | 141 |
| MsG0580028264.01.T03 | MTR_8g461570 | 78.378 | 74 | 15 | 1 | 100 | 172 | 5 | 78 | 1.46e-33 | 114 |
| MsG0580028264.01.T03 | MTR_0012s0290 | 64.228 | 123 | 32 | 3 | 47 | 157 | 1147 | 1269 | 8.90e-33 | 123 |
| MsG0580028264.01.T03 | MTR_7g074720 | 80.822 | 73 | 13 | 1 | 101 | 172 | 2 | 74 | 1.86e-32 | 111 |
| MsG0580028264.01.T03 | MTR_0053s0080 | 50.345 | 145 | 59 | 3 | 1 | 132 | 46 | 190 | 2.11e-24 | 97.8 |
| MsG0580028264.01.T03 | MTR_5g454260 | 64.789 | 71 | 25 | 0 | 1 | 71 | 46 | 116 | 3.26e-21 | 87.0 |
| MsG0580028264.01.T03 | MTR_3g026190 | 48.598 | 107 | 50 | 2 | 21 | 122 | 825 | 931 | 7.87e-16 | 74.7 |
| MsG0580028264.01.T01 | MTR_3g030260 | 67.686 | 229 | 62 | 3 | 1 | 217 | 1 | 229 | 8.54e-93 | 271 |
| MsG0580028264.01.T01 | MTR_6g033455 | 61.905 | 231 | 74 | 4 | 1 | 217 | 1 | 231 | 6.61e-87 | 256 |
| MsG0580028264.01.T01 | MTR_2g009950 | 65.639 | 227 | 66 | 3 | 1 | 215 | 1 | 227 | 2.09e-86 | 257 |
| MsG0580028264.01.T01 | MTR_0510s0010 | 58.009 | 231 | 83 | 4 | 1 | 217 | 8 | 238 | 2.90e-77 | 232 |
| MsG0580028264.01.T01 | MTR_7g016020 | 63.731 | 193 | 58 | 3 | 1 | 181 | 1 | 193 | 4.26e-60 | 192 |
| MsG0580028264.01.T01 | MTR_2g083020 | 64.249 | 193 | 57 | 4 | 1 | 181 | 1 | 193 | 3.27e-57 | 193 |
| MsG0580028264.01.T01 | MTR_7g045350 | 62.774 | 137 | 39 | 3 | 92 | 216 | 23 | 159 | 2.20e-42 | 140 |
| MsG0580028264.01.T01 | MTR_0053s0080 | 52.632 | 190 | 77 | 3 | 1 | 177 | 1 | 190 | 2.97e-35 | 128 |
| MsG0580028264.01.T01 | MTR_8g461570 | 78.378 | 74 | 15 | 1 | 145 | 217 | 5 | 78 | 4.11e-33 | 114 |
| MsG0580028264.01.T01 | MTR_0012s0290 | 64.228 | 123 | 32 | 3 | 92 | 202 | 1147 | 1269 | 3.17e-32 | 123 |
| MsG0580028264.01.T01 | MTR_7g074720 | 80.822 | 73 | 13 | 1 | 146 | 217 | 2 | 74 | 5.87e-32 | 111 |
| MsG0580028264.01.T01 | MTR_5g454260 | 63.793 | 116 | 42 | 0 | 1 | 116 | 1 | 116 | 7.17e-31 | 113 |
| MsG0580028264.01.T01 | MTR_3g026190 | 48.598 | 107 | 50 | 2 | 66 | 167 | 825 | 931 | 1.63e-15 | 75.1 |
| MsG0580028264.01.T04 | MTR_3g030260 | 61.151 | 139 | 42 | 3 | 2 | 128 | 91 | 229 | 2.69e-48 | 154 |
| MsG0580028264.01.T04 | MTR_6g033455 | 64.925 | 134 | 35 | 3 | 7 | 128 | 98 | 231 | 6.02e-48 | 154 |
| MsG0580028264.01.T04 | MTR_0510s0010 | 63.043 | 138 | 39 | 3 | 3 | 128 | 101 | 238 | 1.00e-44 | 145 |
| MsG0580028264.01.T04 | MTR_7g045350 | 62.774 | 137 | 39 | 3 | 3 | 127 | 23 | 159 | 8.41e-43 | 138 |
| MsG0580028264.01.T04 | MTR_2g009950 | 58.824 | 136 | 44 | 3 | 3 | 126 | 92 | 227 | 1.56e-42 | 142 |
| MsG0580028264.01.T04 | MTR_8g461570 | 78.378 | 74 | 15 | 1 | 56 | 128 | 5 | 78 | 1.01e-33 | 112 |
| MsG0580028264.01.T04 | MTR_0012s0290 | 64.228 | 123 | 32 | 3 | 3 | 113 | 1147 | 1269 | 9.34e-33 | 121 |
| MsG0580028264.01.T04 | MTR_7g074720 | 80.822 | 73 | 13 | 1 | 57 | 128 | 2 | 74 | 1.61e-32 | 109 |
| MsG0580028264.01.T04 | MTR_7g016020 | 52.941 | 102 | 36 | 3 | 3 | 92 | 92 | 193 | 2.30e-18 | 79.7 |
| MsG0580028264.01.T04 | MTR_2g083020 | 51.961 | 102 | 37 | 3 | 3 | 92 | 92 | 193 | 6.10e-18 | 79.0 |
| MsG0580028264.01.T04 | MTR_3g026190 | 58.025 | 81 | 29 | 2 | 3 | 78 | 851 | 931 | 2.70e-15 | 71.2 |
| MsG0580028264.01.T04 | MTR_0053s0080 | 54.639 | 97 | 33 | 2 | 3 | 88 | 94 | 190 | 1.09e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGACTCTCTCAAACATATT+TGG | 0.156108 | 5:-77459721 | None:intergenic |
| TTGATAAATTCTTCAATCTT+TGG | 0.223984 | 5:-77459618 | None:intergenic |
| GGAGGAATTCCATGAACTTT+AGG | 0.268489 | 5:-77460035 | None:intergenic |
| ATGTGTTGTCCGTCTCATTT+TGG | 0.313383 | 5:+77460082 | MsG0580028264.01.T01:CDS |
| TCCTTTGAAACCCTACGCTT+TGG | 0.349397 | 5:-77460057 | None:intergenic |
| CCTTTGAAACCCTACGCTTT+GGG | 0.365038 | 5:-77460056 | None:intergenic |
| GGTATCTTGCATGTTTATCA+TGG | 0.380452 | 5:-77459593 | None:intergenic |
| AGAAGTGATAGAGGTGGTAG+AGG | 0.393182 | 5:+77459873 | MsG0580028264.01.T01:CDS |
| GGAAGAAACATTTGAACAAA+AGG | 0.395964 | 5:+77459912 | MsG0580028264.01.T01:CDS |
| TGAGCAAGGCTGAAATTTAC+CGG | 0.398275 | 5:+77459944 | MsG0580028264.01.T01:CDS |
| ACATTGTTGATATTGTTGAT+AGG | 0.404560 | 5:-77459509 | None:intergenic |
| GTCCATGACCTCCTGAACTT+TGG | 0.414042 | 5:-77459997 | None:intergenic |
| TCAGCTGTACCTAAAGTTCA+TGG | 0.424076 | 5:+77460026 | MsG0580028264.01.T01:CDS |
| TTATGAAGATGAGAGATATT+CGG | 0.429317 | 5:+77459534 | MsG0580028264.01.T01:CDS |
| AAATGGATTGATTGTTGGCT+TGG | 0.437779 | 5:-77459678 | None:intergenic |
| GTTGATTCAAGCACAAATCA+TGG | 0.442225 | 5:+77459651 | MsG0580028264.01.T01:CDS |
| CCTTGTTCAAACCAAAGTTC+AGG | 0.445067 | 5:+77459986 | MsG0580028264.01.T01:CDS |
| GTGGCCAACACTGTTGATAA+TGG | 0.457450 | 5:+77459850 | MsG0580028264.01.T01:CDS |
| TAAATTCTTCAATCTTTGGC+TGG | 0.462835 | 5:-77459614 | None:intergenic |
| TTGTTGATAGGATTCATACT+TGG | 0.469352 | 5:-77459497 | None:intergenic |
| GAAGAAACATTTGAACAAAA+GGG | 0.474308 | 5:+77459913 | MsG0580028264.01.T01:CDS |
| GACAAAATCATGGCTGATCA+TGG | 0.485385 | 5:+77459451 | None:intergenic |
| CCTGAACTTTGGTTTGAACA+AGG | 0.502302 | 5:-77459986 | None:intergenic |
| CGCAAATTTCATCAATGACC+CGG | 0.514753 | 5:-77459963 | None:intergenic |
| TGTTGATAGGATTCATACTT+GGG | 0.517284 | 5:-77459496 | None:intergenic |
| AGAAGTCGTTGTTCAAAATG+AGG | 0.518418 | 5:+77459756 | MsG0580028264.01.T01:CDS |
| AACTTTAGGTACAGCTGATG+TGG | 0.527312 | 5:-77460021 | None:intergenic |
| TTCTCCATTATCAACAGTGT+TGG | 0.531055 | 5:-77459854 | None:intergenic |
| AAGACGAACTTCCTCAAGAA+AGG | 0.539436 | 5:+77459815 | MsG0580028264.01.T01:CDS |
| AACCAAAGTTCAGGAGGTCA+TGG | 0.540463 | 5:+77459995 | MsG0580028264.01.T01:CDS |
| TGGAATTCCTCCCAAAGCGT+AGG | 0.545471 | 5:+77460046 | MsG0580028264.01.T01:CDS |
| CCCAAAGCGTAGGGTTTCAA+AGG | 0.548667 | 5:+77460056 | MsG0580028264.01.T01:CDS |
| TCAATATTTGACCTTTCTTG+AGG | 0.555926 | 5:-77459826 | None:intergenic |
| CCAAATATGTTTGAGAGAGT+CGG | 0.559778 | 5:+77459721 | MsG0580028264.01.T01:CDS |
| GGAATTCCTCCCAAAGCGTA+GGG | 0.566799 | 5:+77460047 | MsG0580028264.01.T01:CDS |
| TGATAATGGAGAAGTGATAG+AGG | 0.583165 | 5:+77459864 | MsG0580028264.01.T01:CDS |
| AGAAAGGTCAAATATTGAAG+TGG | 0.590226 | 5:+77459831 | MsG0580028264.01.T01:CDS |
| AGAGGAACGGTTACTTAGCA+AGG | 0.590261 | 5:+77459891 | MsG0580028264.01.T01:CDS |
| AAGAAACATTTGAACAAAAG+GGG | 0.596132 | 5:+77459914 | MsG0580028264.01.T01:CDS |
| TGATAGGATTCATACTTGGG+TGG | 0.604185 | 5:-77459493 | None:intergenic |
| TTGAAACCCTACGCTTTGGG+AGG | 0.607057 | 5:-77460053 | None:intergenic |
| TGATAGAGGTGGTAGAGGAA+CGG | 0.612805 | 5:+77459878 | MsG0580028264.01.T01:CDS |
| GTTACAACATTAGAAGAATG+TGG | 0.625446 | 5:+77459781 | MsG0580028264.01.T01:CDS |
| TAATGGAGAAGTGATAGAGG+TGG | 0.631937 | 5:+77459867 | MsG0580028264.01.T01:CDS |
| TGAGGAAGTTCGTCTTTGTG+TGG | 0.633527 | 5:-77459808 | None:intergenic |
| AAAGGGGAAGAAAGTGAGCA+AGG | 0.636089 | 5:+77459930 | MsG0580028264.01.T01:CDS |
| TGTTCAAACCAAAGTTCAGG+AGG | 0.642083 | 5:+77459989 | MsG0580028264.01.T01:CDS |
| GAGCAAGGCTGAAATTTACC+GGG | 0.643159 | 5:+77459945 | MsG0580028264.01.T01:CDS |
| TTAGGGTGGCCAAAATGAGA+CGG | 0.662957 | 5:-77460091 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATAAATTCTTCAATCTT+TGG | - | Chr5:77459621-77459640 | None:intergenic | 20.0% |
| ! | AAGAAACATTTGAACAAAAG+GGG | + | Chr5:77459914-77459933 | MsG0580028264.01.T01:CDS | 25.0% |
| ! | ACATTGTTGATATTGTTGAT+AGG | - | Chr5:77459512-77459531 | None:intergenic | 25.0% |
| ! | GAAGAAACATTTGAACAAAA+GGG | + | Chr5:77459913-77459932 | MsG0580028264.01.T01:CDS | 25.0% |
| ! | TTATGAAGATGAGAGATATT+CGG | + | Chr5:77459534-77459553 | MsG0580028264.01.T01:CDS | 25.0% |
| !! | ATTTTCTTGTTCTCCAAAAA+TGG | - | Chr5:77459698-77459717 | None:intergenic | 25.0% |
| AGAAAGGTCAAATATTGAAG+TGG | + | Chr5:77459831-77459850 | MsG0580028264.01.T01:CDS | 30.0% | |
| GGAAGAAACATTTGAACAAA+AGG | + | Chr5:77459912-77459931 | MsG0580028264.01.T01:CDS | 30.0% | |
| GTTACAACATTAGAAGAATG+TGG | + | Chr5:77459781-77459800 | MsG0580028264.01.T01:CDS | 30.0% | |
| TAAATTCTTCAATCTTTGGC+TGG | - | Chr5:77459617-77459636 | None:intergenic | 30.0% | |
| TCAATATTTGACCTTTCTTG+AGG | - | Chr5:77459829-77459848 | None:intergenic | 30.0% | |
| ! | TGTTGATAGGATTCATACTT+GGG | - | Chr5:77459499-77459518 | None:intergenic | 30.0% |
| ! | TTGTTGATAGGATTCATACT+TGG | - | Chr5:77459500-77459519 | None:intergenic | 30.0% |
| !! | TCCAAAAATGGATTGATTGT+TGG | - | Chr5:77459686-77459705 | None:intergenic | 30.0% |
| AGAAGTCGTTGTTCAAAATG+AGG | + | Chr5:77459756-77459775 | MsG0580028264.01.T01:CDS | 35.0% | |
| CCAAATATGTTTGAGAGAGT+CGG | + | Chr5:77459721-77459740 | MsG0580028264.01.T01:CDS | 35.0% | |
| GGTATCTTGCATGTTTATCA+TGG | - | Chr5:77459596-77459615 | None:intergenic | 35.0% | |
| TTCTCCATTATCAACAGTGT+TGG | - | Chr5:77459857-77459876 | None:intergenic | 35.0% | |
| ! | GCCAACAATCAATCCATTTT+TGG | + | Chr5:77459682-77459701 | MsG0580028264.01.T01:CDS | 35.0% |
| ! | GTTGATTCAAGCACAAATCA+TGG | + | Chr5:77459651-77459670 | MsG0580028264.01.T01:CDS | 35.0% |
| !! | AAATGGATTGATTGTTGGCT+TGG | - | Chr5:77459681-77459700 | None:intergenic | 35.0% |
| !! | TGATAATGGAGAAGTGATAG+AGG | + | Chr5:77459864-77459883 | MsG0580028264.01.T01:CDS | 35.0% |
| AACTTTAGGTACAGCTGATG+TGG | - | Chr5:77460024-77460043 | None:intergenic | 40.0% | |
| AAGACGAACTTCCTCAAGAA+AGG | + | Chr5:77459815-77459834 | MsG0580028264.01.T01:CDS | 40.0% | |
| CCGACTCTCTCAAACATATT+TGG | - | Chr5:77459724-77459743 | None:intergenic | 40.0% | |
| CCTTGTTCAAACCAAAGTTC+AGG | + | Chr5:77459986-77460005 | MsG0580028264.01.T01:CDS | 40.0% | |
| CGCAAATTTCATCAATGACC+CGG | - | Chr5:77459966-77459985 | None:intergenic | 40.0% | |
| GGAGGAATTCCATGAACTTT+AGG | - | Chr5:77460038-77460057 | None:intergenic | 40.0% | |
| TAATGGAGAAGTGATAGAGG+TGG | + | Chr5:77459867-77459886 | MsG0580028264.01.T01:CDS | 40.0% | |
| TCAGCTGTACCTAAAGTTCA+TGG | + | Chr5:77460026-77460045 | MsG0580028264.01.T01:CDS | 40.0% | |
| TGAGCAAGGCTGAAATTTAC+CGG | + | Chr5:77459944-77459963 | MsG0580028264.01.T01:CDS | 40.0% | |
| TGATAGGATTCATACTTGGG+TGG | - | Chr5:77459496-77459515 | None:intergenic | 40.0% | |
| TGTTCAAACCAAAGTTCAGG+AGG | + | Chr5:77459989-77460008 | MsG0580028264.01.T01:CDS | 40.0% | |
| ! | ATGTGTTGTCCGTCTCATTT+TGG | + | Chr5:77460082-77460101 | MsG0580028264.01.T01:CDS | 40.0% |
| !! | CCTGAACTTTGGTTTGAACA+AGG | - | Chr5:77459989-77460008 | None:intergenic | 40.0% |
| AAAGGGGAAGAAAGTGAGCA+AGG | + | Chr5:77459930-77459949 | MsG0580028264.01.T01:CDS | 45.0% | |
| AACCAAAGTTCAGGAGGTCA+TGG | + | Chr5:77459995-77460014 | MsG0580028264.01.T01:CDS | 45.0% | |
| AGAAGTGATAGAGGTGGTAG+AGG | + | Chr5:77459873-77459892 | MsG0580028264.01.T01:CDS | 45.0% | |
| AGAGGAACGGTTACTTAGCA+AGG | + | Chr5:77459891-77459910 | MsG0580028264.01.T01:CDS | 45.0% | |
| GAGCAAGGCTGAAATTTACC+GGG | + | Chr5:77459945-77459964 | MsG0580028264.01.T01:CDS | 45.0% | |
| TGAGGAAGTTCGTCTTTGTG+TGG | - | Chr5:77459811-77459830 | None:intergenic | 45.0% | |
| TGATAGAGGTGGTAGAGGAA+CGG | + | Chr5:77459878-77459897 | MsG0580028264.01.T01:CDS | 45.0% | |
| TTAGGGTGGCCAAAATGAGA+CGG | - | Chr5:77460094-77460113 | None:intergenic | 45.0% | |
| ! | GTGGCCAACACTGTTGATAA+TGG | + | Chr5:77459850-77459869 | MsG0580028264.01.T01:CDS | 45.0% |
| !! | CCTTTGAAACCCTACGCTTT+GGG | - | Chr5:77460059-77460078 | None:intergenic | 45.0% |
| !! | TCCTTTGAAACCCTACGCTT+TGG | - | Chr5:77460060-77460079 | None:intergenic | 45.0% |
| CCCAAAGCGTAGGGTTTCAA+AGG | + | Chr5:77460056-77460075 | MsG0580028264.01.T01:CDS | 50.0% | |
| GGAATTCCTCCCAAAGCGTA+GGG | + | Chr5:77460047-77460066 | MsG0580028264.01.T01:CDS | 50.0% | |
| GTCCATGACCTCCTGAACTT+TGG | - | Chr5:77460000-77460019 | None:intergenic | 50.0% | |
| TGGAATTCCTCCCAAAGCGT+AGG | + | Chr5:77460046-77460065 | MsG0580028264.01.T01:CDS | 50.0% | |
| ! | TTGAAACCCTACGCTTTGGG+AGG | - | Chr5:77460056-77460075 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 77459460 | 77460113 | 77459460 | ID=MsG0580028264.01;Name=MsG0580028264.01 |
| Chr5 | mRNA | 77459460 | 77460113 | 77459460 | ID=MsG0580028264.01.T01;Parent=MsG0580028264.01;Name=MsG0580028264.01.T01;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|217 |
| Chr5 | exon | 77459460 | 77460113 | 77459460 | ID=MsG0580028264.01.T01:exon:46326;Parent=MsG0580028264.01.T01 |
| Chr5 | CDS | 77459460 | 77460113 | 77459460 | ID=MsG0580028264.01.T01:cds;Parent=MsG0580028264.01.T01 |
| Chr5 | mRNA | 77459583 | 77460113 | 77459583 | ID=MsG0580028264.01.T02;Parent=MsG0580028264.01;Name=MsG0580028264.01.T02;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|0|1|0|176 |
| Chr5 | exon | 77459583 | 77460113 | 77459583 | ID=MsG0580028264.01.T02:exon:46327;Parent=MsG0580028264.01.T02 |
| Chr5 | CDS | 77459583 | 77460113 | 77459583 | ID=MsG0580028264.01.T02:cds;Parent=MsG0580028264.01.T02 |
| Chr5 | mRNA | 77459595 | 77460113 | 77459595 | ID=MsG0580028264.01.T03;Parent=MsG0580028264.01;Name=MsG0580028264.01.T03;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|0|1|0|172 |
| Chr5 | exon | 77459595 | 77460113 | 77459595 | ID=MsG0580028264.01.T03:exon:46328;Parent=MsG0580028264.01.T03 |
| Chr5 | CDS | 77459595 | 77460113 | 77459595 | ID=MsG0580028264.01.T03:cds;Parent=MsG0580028264.01.T03 |
| Chr5 | mRNA | 77459727 | 77460113 | 77459727 | ID=MsG0580028264.01.T04;Parent=MsG0580028264.01;Name=MsG0580028264.01.T04;_AED=0.40;_eAED=0.41;_QI=0|-1|0|1|-1|0|1|0|128 |
| Chr5 | exon | 77459727 | 77460113 | 77459727 | ID=MsG0580028264.01.T04:exon:46329;Parent=MsG0580028264.01.T04 |
| Chr5 | CDS | 77459727 | 77460113 | 77459727 | ID=MsG0580028264.01.T04:cds;Parent=MsG0580028264.01.T04 |
| Gene Sequence |
| Protein sequence |
