AlfalfaGEDB | MsG0580028423.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028423.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028423.01.T01	GAU27760.1	86.145	166	23	0	1	166	274	439	2.42E-105	318

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028423.01.T01	H2DH18	61.875	160	61	0	1	160	341	500	8.41E-69	219

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028423.01.T01	A0A2Z6MVM5	86.145	166	23	0	1	166	274	439	1.16e-105	318

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048748.01	MsG0580028423.01	0.826228	3.043962e-54	2.837691e-51
MsG0180000489.01	MsG0580028423.01	0.846325	2.331620e-59	3.998212e-56
MsG0180000491.01	MsG0580028423.01	0.833158	6.261057e-56	7.150398e-53
MsG0180000549.01	MsG0580028423.01	0.818042	2.409120e-52	1.783653e-49
MsG0180000942.01	MsG0580028423.01	0.845349	4.294064e-59	7.135598e-56
MsG0180001548.01	MsG0580028423.01	0.817855	2.655455e-52	1.956117e-49
MsG0180002700.01	MsG0580028423.01	0.810148	1.331380e-50	7.964298e-48
MsG0180002891.01	MsG0580028423.01	0.814107	1.823043e-51	1.212298e-48
MsG0180005339.01	MsG0580028423.01	0.819644	1.042542e-52	8.068647e-50
MsG0280006400.01	MsG0580028423.01	0.806030	1.002539e-49	5.385268e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028423.01.T01	MTR_5g070700	87.349	166	20	1	1	166	346	510	1.06e-107	317
MsG0580028423.01.T01	MTR_5g070690	87.273	165	21	0	1	165	344	508	4.28e-107	315
MsG0580028423.01.T01	MTR_5g070800	87.273	165	21	0	1	165	344	508	4.28e-107	315
MsG0580028423.01.T01	MTR_5g070830	85.455	165	24	0	1	165	456	620	3.19e-103	308
MsG0580028423.01.T01	MTR_5g070920	84.848	165	24	1	1	165	345	508	1.37e-102	303
MsG0580028423.01.T01	MTR_5g070710	83.636	165	26	1	1	165	343	506	1.87e-100	298
MsG0580028423.01.T01	MTR_5g070973	80.723	166	31	1	1	166	17	181	1.48e-99	285
MsG0580028423.01.T01	MTR_5g070850	78.788	165	35	0	1	165	346	510	9.90e-96	286
MsG0580028423.01.T01	MTR_5g070840	77.848	158	29	1	1	152	17	174	2.64e-89	258
MsG0580028423.01.T01	MTR_8g104100	65.244	164	56	1	1	164	104	266	1.85e-82	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028423.01.T01	AT4G36220	49.375	160	78	3	2	160	359	516	8.73e-50	167
MsG0580028423.01.T01	AT2G45570	46.154	156	83	1	1	156	351	505	2.17e-48	164
MsG0580028423.01.T01	AT2G45580	45.161	155	83	2	2	156	199	351	1.78e-47	158
MsG0580028423.01.T01	AT2G45550	44.872	156	85	1	1	156	350	504	7.60e-47	159
MsG0580028423.01.T01	AT2G45560	44.720	161	88	1	1	161	350	509	2.22e-46	158
MsG0580028423.01.T01	AT2G45580	45.161	155	83	2	2	156	353	505	2.25e-46	158
MsG0580028423.01.T01	AT1G33720	44.025	159	88	1	3	161	220	377	7.72e-45	151
MsG0580028423.01.T01	AT1G33720	44.025	159	88	1	3	161	220	377	7.72e-45	151
MsG0580028423.01.T01	AT1G33720	44.025	159	88	1	3	161	220	377	7.72e-45	151
MsG0580028423.01.T01	AT3G26280	46.875	160	82	2	2	161	347	503	1.36e-44	153

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Find 44 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTATACCATTTGGTTCG+GGG	0.544486	5:+80323093	MsG0580028423.01.T01:CDS
AATTGGTGCACTGCTTTAAC+TGG	0.229334	5:+80323174	MsG0580028423.01.T01:CDS
ACATTCACGAGGGACTAATA+AGG	0.297441	5:-80322904	None:intergenic
ACCTTACGACTTTACCCTGT+CGG	0.534294	5:+80322879	MsG0580028423.01.T01:CDS
ACGTGTTATAGTAAATGCAT+GGG	0.616428	5:+80322971	MsG0580028423.01.T01:CDS
ACGTTGTCCTGGAATTCAGT+TGG	0.502086	5:+80323121	MsG0580028423.01.T01:CDS
ACTAAACCCAACTGAATTCC+AGG	0.406119	5:-80323128	None:intergenic
AGAGAGAGCATAACAATTGA+TGG	0.397506	5:+80322927	MsG0580028423.01.T01:CDS
AGGTGATGCCAAGCATGGAT+AGG	0.575861	5:+80323304	MsG0580028423.01.T01:CDS
ATACCGAGTTATCGTTTGGC+AGG	0.486009	5:+80323284	MsG0580028423.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGTGTTATAGTAAATGCAT+GGG	+	Chr5:80322971-80322990	MsG0580028423.01.T01:CDS	30.0%
CAAGTTAAGCTACTTAGATA+TGG	+	Chr5:80322845-80322864	MsG0580028423.01.T01:CDS	30.0%
TAGTCCTTCCAATTTGAATA+TGG	+	Chr5:80323214-80323233	MsG0580028423.01.T01:CDS	30.0%
TTGAATATGGAGGAGAAATT+TGG	+	Chr5:80323227-80323246	MsG0580028423.01.T01:CDS	30.0%
TTTCTCCTCCATATTCAAAT+TGG	-	Chr5:80323225-80323244	None:intergenic	30.0%
CACGTGTTATAGTAAATGCA+TGG	+	Chr5:80322970-80322989	MsG0580028423.01.T01:CDS	35.0%
GGGTTTAGTTACTATCAGAT+TGG	+	Chr5:80323142-80323161	MsG0580028423.01.T01:CDS	35.0%
TCCTCCATATTCAAATTGGA+AGG	-	Chr5:80323221-80323240	None:intergenic	35.0%
TCCTTCCAATTTGAATATGG+AGG	+	Chr5:80323217-80323236	MsG0580028423.01.T01:CDS	35.0%
TGAACCTATACCATTTGGTT+CGG	+	Chr5:80323091-80323110	MsG0580028423.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	80322822	80323325	80322822	ID=MsG0580028423.01;Name=MsG0580028423.01
Chr5	mRNA	80322822	80323325	80322822	ID=MsG0580028423.01.T01;Parent=MsG0580028423.01;Name=MsG0580028423.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|167
Chr5	exon	80322822	80323325	80322822	ID=MsG0580028423.01.T01:exon:7688;Parent=MsG0580028423.01.T01
Chr5	CDS	80322822	80323325	80322822	ID=MsG0580028423.01.T01:cds;Parent=MsG0580028423.01.T01

Gene Sequence

>MsG0580028423.01.T01

ATGGTTGAAGAGAAAGATTTGAGCAAGTTAAGCTACTTAGATATGGTTGTAGATGAGACCTTACGACTTTACCCTGTCGGACCCTTATTAGTCCCTCGTGAATGTAGAGAGAGCATAACAATTGATGGATATTTTATAAAGGAAAAGTCACGTGTTATAGTAAATGCATGGGCTATAGGGAGAGATTCCAATGTTTGGTCAGAAAATGCTGATGAATTTTATCCTGAGAGGTTTATTGACAAGAAAATGAATTATCAAGGACATGAGCTTGAACCTATACCATTTGGTTCGGGGCGCAGACGTTGTCCTGGAATTCAGTTGGGTTTAGTTACTATCAGATTGGTTATTGCTCAATTGGTGCACTGCTTTAACTGGGAACTTCCATATAATATTAGTCCTTCCAATTTGAATATGGAGGAGAAATTTGGACTCACTATACCAAGAGCTCAACACTTGCATTCAATACCGAGTTATCGTTTGGCAGGTGATGCCAAGCATGGATAG

Protein sequence

>MsG0580028423.01.T01

MVEEKDLSKLSYLDMVVDETLRLYPVGPLLVPRECRESITIDGYFIKEKSRVIVNAWAIGRDSNVWSENADEFYPERFIDKKMNYQGHELEPIPFGSGRRRCPGIQLGLVTIRLVIAQLVHCFNWELPYNISPSNLNMEEKFGLTIPRAQHLHSIPSYRLAGDAKHG*