AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002700.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002700.01.T01 MTR_1g041890 93.407 273 16 1 8 280 188 458 0.0 519
MsG0180002700.01.T01 MTR_1g041890 97.802 91 2 0 353 443 458 548 8.69e-53 186
MsG0180002700.01.T01 MTR_7g080430 37.956 274 163 5 10 277 100 372 2.12e-47 169
MsG0180002700.01.T01 MTR_7g080430 40.288 139 77 1 308 440 324 462 2.90e-21 96.3
MsG0180002700.01.T01 MTR_7g112100 31.624 234 148 6 50 276 146 374 3.04e-21 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002700.01.T01 AT3G57190 53.455 275 117 5 9 280 46 312 4.49e-94 290
MsG0180002700.01.T01 AT3G57190 60.000 90 35 1 353 442 312 400 1.36e-23 102
MsG0180002700.01.T01 AT5G36170 34.672 274 172 5 10 277 80 352 1.93e-40 149
MsG0180002700.01.T01 AT5G36170 34.672 274 172 5 10 277 81 353 1.97e-40 149
MsG0180002700.01.T01 AT5G36170 34.672 274 172 5 10 277 81 353 2.17e-40 150
MsG0180002700.01.T01 AT5G36170 43.478 138 72 1 308 439 305 442 4.86e-23 101
MsG0180002700.01.T01 AT5G36170 34.672 274 172 5 10 277 80 352 2.26e-40 150
MsG0180002700.01.T01 AT5G36170 43.478 138 72 1 308 439 304 441 5.16e-23 101
MsG0180002700.01.T01 AT1G56350 33.476 233 147 5 49 276 152 381 2.52e-23 102

Find 81 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGTTTGTATTTATATTA+AGG 0.207620 1:+43248895 MsG0180002700.01.T01:CDS
CAAGGAGTTGGTAGTATAAA+TGG 0.246573 1:+43249662 MsG0180002700.01.T01:CDS
TCAATTTCATTTGCAAGTTC+TGG 0.259153 1:-43248825 None:intergenic
TTCAAAGGTTTCATATATAA+AGG 0.267641 1:+43246960 MsG0180002700.01.T01:CDS
GAGATATCCAAGCTTCTTAA+AGG 0.276860 1:+43246883 MsG0180002700.01.T01:CDS
AACTACACCATGGCCTAAAA+AGG 0.285626 1:-43248874 None:intergenic
ATGTGCTTATGGCTATCTTT+TGG 0.289466 1:+43247217 MsG0180002700.01.T01:CDS
TCCTTCATAACCTTGTCTTT+TGG 0.304609 1:-43247126 None:intergenic
ATCTCGTCTCCCTTGATTCA+TGG 0.321150 1:+43248642 MsG0180002700.01.T01:CDS
GAGATGAATGTTATTGATTA+CGG 0.351605 1:+43246802 MsG0180002700.01.T01:CDS
TTTGAATTTGAATGTGCTTA+TGG 0.354922 1:+43247206 MsG0180002700.01.T01:CDS
CTTTCATCTTATTTGCAAAC+TGG 0.356322 1:-43249595 None:intergenic
GAAATAGTAGCAGTCATATA+AGG 0.361122 1:-43248852 None:intergenic
TGATATGGCAGGAGCATGTT+TGG 0.368531 1:+43246912 MsG0180002700.01.T01:CDS
TCTTAAAGGGCCATTTGATA+TGG 0.373189 1:+43246897 MsG0180002700.01.T01:CDS
AGATGAATGTTATTGATTAC+GGG 0.377034 1:+43246803 MsG0180002700.01.T01:CDS
TGCATTCGTCATATACCTAC+TGG 0.380498 1:+43248696 MsG0180002700.01.T01:CDS
ACATCATGTACTAACTTGTA+TGG 0.392795 1:-43249746 None:intergenic
CCCATCCAAGGTACATTTGT+AGG 0.393835 1:-43247103 None:intergenic
CATTTGCAAGTTCTGGCAAA+TGG 0.395309 1:-43248818 None:intergenic
AAGGAGTTCACCACCTCATA+AGG 0.397909 1:+43247246 MsG0180002700.01.T01:CDS
GTTGTATGCATCAACAGCTT+TGG 0.415883 1:+43246186 MsG0180002700.01.T01:CDS
GGACTTGAATATAGAATAAA+CGG 0.417160 1:-43248797 None:intergenic
TGCATCAACAGCTTTGGAAA+TGG 0.426629 1:+43246192 MsG0180002700.01.T01:CDS
AAATGGCCCTTTAAGAAGCT+TGG 0.428987 1:-43246890 None:intergenic
TTGGATTAAGCAGGAAGAAA+TGG 0.429971 1:+43246225 MsG0180002700.01.T01:CDS
TTTCTGTTCTCCATGAATCA+AGG 0.438309 1:-43248652 None:intergenic
CATTCGGAGAACCCCTTATG+AGG 0.442926 1:-43247259 None:intergenic
AATAGACGTGAGCAACATAC+TGG 0.450203 1:+43246852 MsG0180002700.01.T01:CDS
TTAATATGAGCTGCAATAAG+AGG 0.455039 1:-43249824 None:intergenic
CTTTAGAGAATCAACTACTT+TGG 0.455693 1:-43246317 None:intergenic
AGGAGTTCACCACCTCATAA+GGG 0.456040 1:+43247247 MsG0180002700.01.T01:CDS
AGATATCCAAGCTTCTTAAA+GGG 0.458376 1:+43246884 MsG0180002700.01.T01:CDS
GAATGTCGTTGGACTTAGTT+GGG 0.470599 1:-43246273 None:intergenic
TCCTACAAATGTACCTTGGA+TGG 0.475306 1:+43247102 MsG0180002700.01.T01:CDS
ATATGACGAATGCAAACTAT+AGG 0.480794 1:-43248687 None:intergenic
CTTTGAAAAGATGCCGGTAG+TGG 0.481878 1:-43246944 None:intergenic
TTCTGTTCTCCATGAATCAA+GGG 0.482036 1:-43248651 None:intergenic
AGAATGTCGTTGGACTTAGT+TGG 0.486932 1:-43246274 None:intergenic
AGAAGCAAGTTGGATTAAGC+AGG 0.495038 1:+43246216 MsG0180002700.01.T01:CDS
GACAGGTGTTTGATCGAGAA+TGG 0.495149 1:+43247158 MsG0180002700.01.T01:CDS
CAAAGTAGTTGATTCTCTAA+AGG 0.495997 1:+43246318 MsG0180002700.01.T01:CDS
ACAAACATTGAAATATGCTC+AGG 0.502679 1:+43246115 MsG0180002700.01.T01:CDS
CATGCTCCTGCCATATCAAA+TGG 0.512944 1:-43246907 None:intergenic
AAAGGGCCATTTGATATGGC+AGG 0.516727 1:+43246901 MsG0180002700.01.T01:CDS
GGGATAACTGTCCAATCCTC+TGG 0.523138 1:+43248717 MsG0180002700.01.T01:CDS
ATGAAGGAAGGATTGTTGAC+AGG 0.525711 1:+43247141 MsG0180002700.01.T01:CDS
ATATATGCATACCAGAGGAT+TGG 0.533561 1:-43248728 None:intergenic
GCCAAAAGACAAGGTTATGA+AGG 0.538834 1:+43247125 MsG0180002700.01.T01:CDS
TGATTCATGGAGAACAGAAA+AGG 0.539765 1:+43248655 MsG0180002700.01.T01:CDS
CAACGACATTCTTGTCAAGT+TGG 0.539891 1:+43246285 MsG0180002700.01.T01:CDS
TCAAGCTGAGAAGATTCATT+CGG 0.543915 1:-43247275 None:intergenic
TTAGTACATGATGTAAAGAC+TGG 0.546769 1:+43249755 MsG0180002700.01.T01:CDS
CAAGATCACGAGATTTCTCT+AGG 0.549040 1:-43248596 None:intergenic
TGGAAATGGAAGAAGCAAGT+TGG 0.549399 1:+43246206 MsG0180002700.01.T01:CDS
TGATCTTGAGATTGATTCCG+AGG 0.550181 1:+43248611 MsG0180002700.01.T01:CDS
GAATGAATCTTCTCAGCTTG+AGG 0.567388 1:+43247277 MsG0180002700.01.T01:CDS
TCTAAAGGACTTGAGATACA+AGG 0.568284 1:+43246333 MsG0180002700.01.T01:CDS
AAAGACAAGGTTATGAAGGA+AGG 0.569293 1:+43247129 MsG0180002700.01.T01:CDS
AGGATAAAATTGTGAATCTG+TGG 0.570840 1:+43249693 MsG0180002700.01.T01:CDS
ATAGCAATTGAACAAGGAGT+TGG 0.573691 1:+43249650 MsG0180002700.01.T01:CDS
TGAAACCTTTGAAAAGATGC+CGG 0.574427 1:-43246950 None:intergenic
CAGCTCCTACAAATGTACCT+TGG 0.577693 1:+43247098 MsG0180002700.01.T01:intron
TGGTACGTGATTCAGATCTG+TGG 0.584944 1:+43246245 MsG0180002700.01.T01:CDS
AGACGAGATAATCAAATCCT+CGG 0.589811 1:-43248628 None:intergenic
TTGGTTATAAAAGCCACTAC+CGG 0.590362 1:+43246931 MsG0180002700.01.T01:CDS
CCTACAAATGTACCTTGGAT+GGG 0.603204 1:+43247103 MsG0180002700.01.T01:CDS
CTTGGATGGGCCAAAAGACA+AGG 0.605632 1:+43247116 MsG0180002700.01.T01:CDS
CAACTTGACAAGAATGTCGT+TGG 0.606247 1:-43246284 None:intergenic
GCATTCGTCATATACCTACT+GGG 0.609457 1:+43248697 MsG0180002700.01.T01:CDS
TAGTATAAATGGTATAGTGA+AGG 0.625252 1:+43249673 MsG0180002700.01.T01:CDS
CGAGATTTCTCTAGGAACAA+CGG 0.638068 1:-43248588 None:intergenic
CAAGTGATAGCAATTGAACA+AGG 0.638703 1:+43249644 MsG0180002700.01.T01:CDS
GGAGTTCACCACCTCATAAG+GGG 0.638808 1:+43247248 MsG0180002700.01.T01:CDS
GGATAAAATTGTGAATCTGT+GGG 0.646737 1:+43249694 MsG0180002700.01.T01:CDS
GGTACGTGATTCAGATCTGT+GGG 0.649395 1:+43246246 MsG0180002700.01.T01:CDS
GATTGGACAGTTATCCCAGT+AGG 0.654358 1:-43248711 None:intergenic
TCGGAGAACCCCTTATGAGG+TGG 0.658387 1:-43247256 None:intergenic
AGGTGTTTGATCGAGAATGG+AGG 0.662357 1:+43247161 MsG0180002700.01.T01:CDS
CACAGATATATGCATACCAG+AGG 0.672470 1:-43248733 None:intergenic
ATACAAACTCAACTACACCA+TGG 0.684194 1:-43248884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTAATTTTATTCATTT+TGG - Chr1:43249366-43249385 None:intergenic 10.0%
!!! TTTTCATATAAAATGAAAAA+AGG - Chr1:43246719-43246738 None:intergenic 10.0%
!! AAATCCTCATTTAAAAAAAA+AGG - Chr1:43249529-43249548 None:intergenic 15.0%
!! ATAAGAATTACATTACATTA+CGG + Chr1:43246603-43246622 MsG0180002700.01.T01:intron 15.0%
!! CAATAATGTTTGTAATTTAA+GGG + Chr1:43249339-43249358 MsG0180002700.01.T01:intron 15.0%
!! TAGAAGTGAAAATAAATAAT+AGG - Chr1:43246401-43246420 None:intergenic 15.0%
!! TTGAGTTTGTATTTATATTA+AGG + Chr1:43248895-43248914 MsG0180002700.01.T01:CDS 15.0%
!!! AAAATAATGTTGACATTTTT+TGG - Chr1:43247520-43247539 None:intergenic 15.0%
!!! ACTTTTTTTTTTCTTTGTAA+AGG + Chr1:43249563-43249582 MsG0180002700.01.T01:CDS 15.0%
!!! TTTGGATTTTTTAGATATAT+TGG - Chr1:43247502-43247521 None:intergenic 15.0%
!! AAACAATAGAGAATGTATTA+CGG + Chr1:43247444-43247463 MsG0180002700.01.T01:intron 20.0%
!! AATGAAACAAGAAAACTTAA+AGG + Chr1:43249314-43249333 MsG0180002700.01.T01:intron 20.0%
!! ATACAGTTCAAAACATATAT+AGG + Chr1:43248069-43248088 MsG0180002700.01.T01:intron 20.0%
!! CAAAGACTAATATGAAATAT+AGG - Chr1:43247028-43247047 None:intergenic 20.0%
!! CCAATAATGTTTGTAATTTA+AGG + Chr1:43249338-43249357 MsG0180002700.01.T01:intron 20.0%
!! CCTTAAATTACAAACATTAT+TGG - Chr1:43249341-43249360 None:intergenic 20.0%
!! CTCTTAAAGATAGAAAAATT+GGG - Chr1:43248280-43248299 None:intergenic 20.0%
!! GAAACCTAAAAATAACTTAA+GGG - Chr1:43248939-43248958 None:intergenic 20.0%
!! GAAATTGAATTTACTCAAAA+AGG - Chr1:43248023-43248042 None:intergenic 20.0%
!! TAAGAATTACATTACATTAC+GGG + Chr1:43246604-43246623 MsG0180002700.01.T01:intron 20.0%
!! TATGAATAAAAAAATAGCAG+CGG - Chr1:43246998-43247017 None:intergenic 20.0%
!! TTCAAAGGTTTCATATATAA+AGG + Chr1:43246960-43246979 MsG0180002700.01.T01:CDS 20.0%
!!! AACATTATTTTCAGTTTTTC+CGG + Chr1:43247529-43247548 MsG0180002700.01.T01:intron 20.0%
!!! AAGTCCTTTTTTTTTAAATG+AGG + Chr1:43249522-43249541 MsG0180002700.01.T01:intron 20.0%
!!! ATCTAAATACTGTTTTAGAT+GGG + Chr1:43249792-43249811 MsG0180002700.01.T01:CDS 20.0%
!!! GAAAAATCAGTTTTACAATT+AGG - Chr1:43247326-43247345 None:intergenic 20.0%
!!! TAAGTTTTCTTGTTTCATTT+TGG - Chr1:43249313-43249332 None:intergenic 20.0%
!!! TGTAATTGTTGTTTAACTTA+TGG - Chr1:43247797-43247816 None:intergenic 20.0%
! AAAATTCCTAGATTTGTGAA+AGG + Chr1:43246567-43246586 MsG0180002700.01.T01:intron 25.0%
! AAAGTTTAGTTGAAAGTGAT+GGG - Chr1:43246371-43246390 None:intergenic 25.0%
! AACATTTCTTTACAATACGT+TGG + Chr1:43248097-43248116 MsG0180002700.01.T01:intron 25.0%
! AACCATAATTATCTCATACA+GGG - Chr1:43246504-43246523 None:intergenic 25.0%
! AATTAGAGACAATGTATTTC+CGG - Chr1:43247551-43247570 None:intergenic 25.0%
! AGATCTTAATAGGTTAACAT+TGG + Chr1:43247816-43247835 MsG0180002700.01.T01:intron 25.0%
! ATGAAACGAAAACAACTTAA+GGG - Chr1:43249030-43249049 None:intergenic 25.0%
! ATTGAATTTACTCAAAAAGG+TGG - Chr1:43248020-43248039 None:intergenic 25.0%
! CAAATGTGATGTATTGAAAT+CGG - Chr1:43247715-43247734 None:intergenic 25.0%
! CAACAATTACAGATCTTAAT+AGG + Chr1:43247806-43247825 MsG0180002700.01.T01:intron 25.0%
! CCTCTTAAAGATAGAAAAAT+TGG - Chr1:43248281-43248300 None:intergenic 25.0%
! CGAAACCTAAAAATAACTTA+AGG - Chr1:43248940-43248959 None:intergenic 25.0%
! CTACAATGTGTATAATGATA+GGG - Chr1:43248162-43248181 None:intergenic 25.0%
! CTTGTATTAATTTCACTCAT+GGG + Chr1:43249409-43249428 MsG0180002700.01.T01:intron 25.0%
! GACAAATTCAAACTAATGAT+GGG - Chr1:43247936-43247955 None:intergenic 25.0%
! GGACTTGAATATAGAATAAA+CGG - Chr1:43248800-43248819 None:intergenic 25.0%
! GTAACAAACGTTATACAAAT+TGG + Chr1:43249003-43249022 MsG0180002700.01.T01:intron 25.0%
! TAACCATAATTATCTCATAC+AGG - Chr1:43246505-43246524 None:intergenic 25.0%
! TAGGCTAATGAATTATAGTA+TGG + Chr1:43248491-43248510 MsG0180002700.01.T01:intron 25.0%
! TAGTATAAATGGTATAGTGA+AGG + Chr1:43249673-43249692 MsG0180002700.01.T01:CDS 25.0%
! TATAGTATGGTATAGATGTT+TGG + Chr1:43248504-43248523 MsG0180002700.01.T01:intron 25.0%
! TCTACAATGTGTATAATGAT+AGG - Chr1:43248163-43248182 None:intergenic 25.0%
! TCTATTGTTTATCTTACCAT+TGG - Chr1:43247434-43247453 None:intergenic 25.0%
! TGACAAATTCAAACTAATGA+TGG - Chr1:43247937-43247956 None:intergenic 25.0%
! TTTGAATTTGAATGTGCTTA+TGG + Chr1:43247206-43247225 MsG0180002700.01.T01:CDS 25.0%
!! AGATGAATGTTATTGATTAC+GGG + Chr1:43246803-43246822 MsG0180002700.01.T01:CDS 25.0%
!! ATGTTCATATGGATGATTTT+TGG + Chr1:43248414-43248433 MsG0180002700.01.T01:intron 25.0%
!! CCAATTTTTCTATCTTTAAG+AGG + Chr1:43248278-43248297 MsG0180002700.01.T01:intron 25.0%
!! CCTTTAAGTAACAAATTTTG+TGG - Chr1:43249263-43249282 None:intergenic 25.0%
!! GAGATGAATGTTATTGATTA+CGG + Chr1:43246802-43246821 MsG0180002700.01.T01:CDS 25.0%
!! TTGTATAACGTTTGTTACTT+AGG - Chr1:43249001-43249020 None:intergenic 25.0%
!!! CAAGTTTTTTAAGTGTTTGT+AGG + Chr1:43248472-43248491 MsG0180002700.01.T01:intron 25.0%
!!! CCACAAAATTTGTTACTTAA+AGG + Chr1:43249260-43249279 MsG0180002700.01.T01:intron 25.0%
!!! GATCTAAATACTGTTTTAGA+TGG + Chr1:43249791-43249810 MsG0180002700.01.T01:CDS 25.0%
!!! GTTATTTTTAGGTTTCGTTT+TGG + Chr1:43248943-43248962 MsG0180002700.01.T01:intron 25.0%
!!! TGTTCCCTTAAGTTATTTTT+AGG + Chr1:43248932-43248951 MsG0180002700.01.T01:intron 25.0%
AAAAAGCCTTTCACAAATCT+AGG - Chr1:43246576-43246595 None:intergenic 30.0%
AAATCCATTGATAGGATCAT+AGG + Chr1:43249486-43249505 MsG0180002700.01.T01:intron 30.0%
ACAAACATTGAAATATGCTC+AGG + Chr1:43246115-43246134 MsG0180002700.01.T01:CDS 30.0%
AGATATCCAAGCTTCTTAAA+GGG + Chr1:43246884-43246903 MsG0180002700.01.T01:CDS 30.0%
AGGATAAAATTGTGAATCTG+TGG + Chr1:43249693-43249712 MsG0180002700.01.T01:CDS 30.0%
ATATGACGAATGCAAACTAT+AGG - Chr1:43248690-43248709 None:intergenic 30.0%
ATCTCTTAAGATTTGAGTGT+TGG + Chr1:43249054-43249073 MsG0180002700.01.T01:intron 30.0%
ATTCAATTTCGTTCAGCTAT+AGG + Chr1:43248033-43248052 MsG0180002700.01.T01:intron 30.0%
CCATGAGTGAAATTAATACA+AGG - Chr1:43249411-43249430 None:intergenic 30.0%
CCTGCATGTAATGTATAAAA+TGG + Chr1:43248188-43248207 MsG0180002700.01.T01:intron 30.0%
CCTTGTATTAATTTCACTCA+TGG + Chr1:43249408-43249427 MsG0180002700.01.T01:intron 30.0%
GAAAGTTTAGTTGAAAGTGA+TGG - Chr1:43246372-43246391 None:intergenic 30.0%
GAAATAGTAGCAGTCATATA+AGG - Chr1:43248855-43248874 None:intergenic 30.0%
GATGAAACGAAAACAACTTA+AGG - Chr1:43249031-43249050 None:intergenic 30.0%
GCATCTTCACAAATTGTTTA+TGG - Chr1:43248365-43248384 None:intergenic 30.0%
GGATAAAATTGTGAATCTGT+GGG + Chr1:43249694-43249713 MsG0180002700.01.T01:CDS 30.0%
GTGAAACAAAACAGACTTAA+GGG - Chr1:43248970-43248989 None:intergenic 30.0%
GTTTATCTTACCATTGGAAA+CGG - Chr1:43247428-43247447 None:intergenic 30.0%
TAAGAAATATTGGTCCTGAT+AGG + Chr1:43249109-43249128 MsG0180002700.01.T01:intron 30.0%
TAATGATAGGGTATGAAATG+TGG - Chr1:43248150-43248169 None:intergenic 30.0%
TAGTTATGATAGAGAGAAGA+TGG - Chr1:43247579-43247598 None:intergenic 30.0%
TCAATTTCATTTGCAAGTTC+TGG - Chr1:43248828-43248847 None:intergenic 30.0%
TGTGAAACAAAACAGACTTA+AGG - Chr1:43248971-43248990 None:intergenic 30.0%
TTAATATGAGCTGCAATAAG+AGG - Chr1:43249827-43249846 None:intergenic 30.0%
TTACAATTAGGTAGTACGAA+AGG - Chr1:43247314-43247333 None:intergenic 30.0%
TTAGTACATGATGTAAAGAC+TGG + Chr1:43249755-43249774 MsG0180002700.01.T01:CDS 30.0%
TTATACATTACATGCAGGTT+AGG - Chr1:43248186-43248205 None:intergenic 30.0%
TTCCCTGTATGAGATAATTA+TGG + Chr1:43246499-43246518 MsG0180002700.01.T01:intron 30.0%
TTGTGCAATTTCTTGCTAAA+AGG - Chr1:43247875-43247894 None:intergenic 30.0%
! ACAAGGCTAAATTACACTTT+TGG - Chr1:43249394-43249413 None:intergenic 30.0%
! ACATCATGTACTAACTTGTA+TGG - Chr1:43249749-43249768 None:intergenic 30.0%
! ACTGCTACTATTTCCTTTTT+AGG + Chr1:43248861-43248880 MsG0180002700.01.T01:CDS 30.0%
! CAAAGTAGTTGATTCTCTAA+AGG + Chr1:43246318-43246337 MsG0180002700.01.T01:CDS 30.0%
! CCATTTTATACATTACATGC+AGG - Chr1:43248191-43248210 None:intergenic 30.0%
! CTTTAGAGAATCAACTACTT+TGG - Chr1:43246320-43246339 None:intergenic 30.0%
! CTTTCATCTTATTTGCAAAC+TGG - Chr1:43249598-43249617 None:intergenic 30.0%
! GATTATCTCTGGTGTTAATT+TGG - Chr1:43249192-43249211 None:intergenic 30.0%
! GTTAACATTGGAAAGTTTTC+AGG + Chr1:43247828-43247847 MsG0180002700.01.T01:intron 30.0%
! TAGTCTAGAATTGAATCCTT+AGG + Chr1:43247904-43247923 MsG0180002700.01.T01:intron 30.0%
!! AAAAGGTGGTTAGTTTGTAA+AGG - Chr1:43248006-43248025 None:intergenic 30.0%
!! AAATTTTGTGGTGTTAGCTT+GGG - Chr1:43249251-43249270 None:intergenic 30.0%
!! ACTGTTTTAGATGGGAATAT+TGG + Chr1:43249800-43249819 MsG0180002700.01.T01:CDS 30.0%
AAAGACAAGGTTATGAAGGA+AGG + Chr1:43247129-43247148 MsG0180002700.01.T01:CDS 35.0%
AAATATTGGTCCTGATAGGA+AGG + Chr1:43249113-43249132 MsG0180002700.01.T01:intron 35.0%
AAGAAACGCATGAAGTAAAC+AGG - Chr1:43247402-43247421 None:intergenic 35.0%
AGACGAGATAATCAAATCCT+CGG - Chr1:43248631-43248650 None:intergenic 35.0%
ATACAAACTCAACTACACCA+TGG - Chr1:43248887-43248906 None:intergenic 35.0%
ATAGCAATTGAACAAGGAGT+TGG + Chr1:43249650-43249669 MsG0180002700.01.T01:CDS 35.0%
ATATATGCATACCAGAGGAT+TGG - Chr1:43248731-43248750 None:intergenic 35.0%
ATCTGTGGGAAGAAAAAACT+AGG + Chr1:43249708-43249727 MsG0180002700.01.T01:CDS 35.0%
CAAGTGATAGCAATTGAACA+AGG + Chr1:43249644-43249663 MsG0180002700.01.T01:CDS 35.0%
GAGATATCCAAGCTTCTTAA+AGG + Chr1:43246883-43246902 MsG0180002700.01.T01:CDS 35.0%
TAGCTAAGAAGGAAATCATG+AGG - Chr1:43249456-43249475 None:intergenic 35.0%
TAGTCCTATGATCCTATCAA+TGG - Chr1:43249493-43249512 None:intergenic 35.0%
TCAAGCTGAGAAGATTCATT+CGG - Chr1:43247278-43247297 None:intergenic 35.0%
TCTAAAGGACTTGAGATACA+AGG + Chr1:43246333-43246352 MsG0180002700.01.T01:CDS 35.0%
TCTTAAAGGGCCATTTGATA+TGG + Chr1:43246897-43246916 MsG0180002700.01.T01:CDS 35.0%
TGATTCATGGAGAACAGAAA+AGG + Chr1:43248655-43248674 MsG0180002700.01.T01:CDS 35.0%
TGATTTCCCAGACTAATGTT+TGG + Chr1:43248254-43248273 MsG0180002700.01.T01:intron 35.0%
TTCTGTTCTCCATGAATCAA+GGG - Chr1:43248654-43248673 None:intergenic 35.0%
TTGGATTAAGCAGGAAGAAA+TGG + Chr1:43246225-43246244 MsG0180002700.01.T01:CDS 35.0%
TTGGTTATAAAAGCCACTAC+CGG + Chr1:43246931-43246950 MsG0180002700.01.T01:CDS 35.0%
TTTCTGTTCTCCATGAATCA+AGG - Chr1:43248655-43248674 None:intergenic 35.0%
TTTGTCATAATCCGACAACA+TGG + Chr1:43247950-43247969 MsG0180002700.01.T01:intron 35.0%
! ACTTGTAACAGTGTTGTTGA+TGG - Chr1:43248457-43248476 None:intergenic 35.0%
! ATCCTATCAATGGATTTGCA+GGG - Chr1:43249483-43249502 None:intergenic 35.0%
! ATCTCTGGTGTTAATTTGGT+GGG - Chr1:43249188-43249207 None:intergenic 35.0%
! ATGTGCTTATGGCTATCTTT+TGG + Chr1:43247217-43247236 MsG0180002700.01.T01:CDS 35.0%
! GTCTTCGATTTTCCTTCTTA+GGG - Chr1:43246149-43246168 None:intergenic 35.0%
! GTTTCTTTTTCCGTTTCCAA+TGG + Chr1:43247415-43247434 MsG0180002700.01.T01:intron 35.0%
! TATCTCTGGTGTTAATTTGG+TGG - Chr1:43249189-43249208 None:intergenic 35.0%
! TCCTTCATAACCTTGTCTTT+TGG - Chr1:43247129-43247148 None:intergenic 35.0%
! TGAAACCTTTGAAAAGATGC+CGG - Chr1:43246953-43246972 None:intergenic 35.0%
! TGTCTTCGATTTTCCTTCTT+AGG - Chr1:43246150-43246169 None:intergenic 35.0%
! TGTGCTTATGGCTATCTTTT+GGG + Chr1:43247218-43247237 MsG0180002700.01.T01:CDS 35.0%
! TTTTGCTTGAATCAAGCTCT+GGG + Chr1:43247070-43247089 MsG0180002700.01.T01:intron 35.0%
!! ACTATTTCCTTTTTAGGCCA+TGG + Chr1:43248867-43248886 MsG0180002700.01.T01:CDS 35.0%
!! CAAATTTTGTGGTGTTAGCT+TGG - Chr1:43249252-43249271 None:intergenic 35.0%
!! CAAGGAGTTGGTAGTATAAA+TGG + Chr1:43249662-43249681 MsG0180002700.01.T01:CDS 35.0%
!! CAGGTTTATTTTCCCTAAGA+AGG + Chr1:43246134-43246153 MsG0180002700.01.T01:CDS 35.0%
!!! GTAAACAGGTTAGTTTTCAG+AGG - Chr1:43247388-43247407 None:intergenic 35.0%
AACCCATATGGTGAAGAGAA+AGG + Chr1:43248124-43248143 MsG0180002700.01.T01:intron 40.0%
AACTACACCATGGCCTAAAA+AGG - Chr1:43248877-43248896 None:intergenic 40.0%
AATAGACGTGAGCAACATAC+TGG + Chr1:43246852-43246871 MsG0180002700.01.T01:CDS 40.0%
AATTGGGCCAAACATTAGTC+TGG - Chr1:43248264-43248283 None:intergenic 40.0%
ACACATTAGTCCTTCCTATC+AGG - Chr1:43249126-43249145 None:intergenic 40.0%
ACCTGCTTGACATACAACAA+GGG - Chr1:43246751-43246770 None:intergenic 40.0%
AGAATGTCGTTGGACTTAGT+TGG - Chr1:43246277-43246296 None:intergenic 40.0%
ATGAAGGAAGGATTGTTGAC+AGG + Chr1:43247141-43247160 MsG0180002700.01.T01:CDS 40.0%
CAACGACATTCTTGTCAAGT+TGG + Chr1:43246285-43246304 MsG0180002700.01.T01:CDS 40.0%
CAACTTGACAAGAATGTCGT+TGG - Chr1:43246287-43246306 None:intergenic 40.0%
CAAGATCACGAGATTTCTCT+AGG - Chr1:43248599-43248618 None:intergenic 40.0%
CACAGATATATGCATACCAG+AGG - Chr1:43248736-43248755 None:intergenic 40.0%
CACCAAAAGAACCATGTTGT+CGG - Chr1:43247964-43247983 None:intergenic 40.0%
CATTACATTACGGGTCTGTT+TGG + Chr1:43246613-43246632 MsG0180002700.01.T01:intron 40.0%
CCTACAAATGTACCTTGGAT+GGG + Chr1:43247103-43247122 MsG0180002700.01.T01:CDS 40.0%
GAATGAATCTTCTCAGCTTG+AGG + Chr1:43247277-43247296 MsG0180002700.01.T01:CDS 40.0%
GAATGTCGTTGGACTTAGTT+GGG - Chr1:43246276-43246295 None:intergenic 40.0%
GCATTCGTCATATACCTACT+GGG + Chr1:43248697-43248716 MsG0180002700.01.T01:CDS 40.0%
GCCAAAAGACAAGGTTATGA+AGG + Chr1:43247125-43247144 MsG0180002700.01.T01:CDS 40.0%
GGGAAATCATGCTCTTAACA+TGG - Chr1:43248243-43248262 None:intergenic 40.0%
GTTGTATGCATCAACAGCTT+TGG + Chr1:43246186-43246205 MsG0180002700.01.T01:CDS 40.0%
TACCTGCTTGACATACAACA+AGG - Chr1:43246752-43246771 None:intergenic 40.0%
TCCTACAAATGTACCTTGGA+TGG + Chr1:43247102-43247121 MsG0180002700.01.T01:CDS 40.0%
TGATGGCAGAATATGGAAGA+AGG - Chr1:43248440-43248459 None:intergenic 40.0%
TGCATTCGTCATATACCTAC+TGG + Chr1:43248696-43248715 MsG0180002700.01.T01:CDS 40.0%
TGGAAATGGAAGAAGCAAGT+TGG + Chr1:43246206-43246225 MsG0180002700.01.T01:CDS 40.0%
TGTGGGAAGAAAAAACTAGG+AGG + Chr1:43249711-43249730 MsG0180002700.01.T01:CDS 40.0%
TTCCCTGCAAATCCATTGAT+AGG + Chr1:43249478-43249497 MsG0180002700.01.T01:intron 40.0%
! AAATGGCCCTTTAAGAAGCT+TGG - Chr1:43246893-43246912 None:intergenic 40.0%
! AGAAGCAAGTTGGATTAAGC+AGG + Chr1:43246216-43246235 MsG0180002700.01.T01:CDS 40.0%
! ATCCGACAACATGGTTCTTT+TGG + Chr1:43247959-43247978 MsG0180002700.01.T01:intron 40.0%
! ATTGGGCCAAACATTAGTCT+GGG - Chr1:43248263-43248282 None:intergenic 40.0%
! CATTTGCAAGTTCTGGCAAA+TGG - Chr1:43248821-43248840 None:intergenic 40.0%
! CGAGATTTCTCTAGGAACAA+CGG - Chr1:43248591-43248610 None:intergenic 40.0%
! CTTTTGCTTGAATCAAGCTC+TGG + Chr1:43247069-43247088 MsG0180002700.01.T01:intron 40.0%
! GATCCTATCAATGGATTTGC+AGG - Chr1:43249484-43249503 None:intergenic 40.0%
! GGCAGTGTAGTGTTGTTAAA+TGG + Chr1:43248299-43248318 MsG0180002700.01.T01:intron 40.0%
! GTGCTTATGGCTATCTTTTG+GGG + Chr1:43247219-43247238 MsG0180002700.01.T01:CDS 40.0%
! TGATCTTGAGATTGATTCCG+AGG + Chr1:43248611-43248630 MsG0180002700.01.T01:CDS 40.0%
! TGCTTATGGCTATCTTTTGG+GGG + Chr1:43247220-43247239 MsG0180002700.01.T01:CDS 40.0%
!! GATTTGAGTGTTGGACACTT+TGG + Chr1:43249063-43249082 MsG0180002700.01.T01:intron 40.0%
!! GTGTTGTTGATGGCAGAATA+TGG - Chr1:43248447-43248466 None:intergenic 40.0%
!! TGCATCAACAGCTTTGGAAA+TGG + Chr1:43246192-43246211 MsG0180002700.01.T01:CDS 40.0%
!! TTCAAACTAATGATGGGCTG+TGG - Chr1:43247930-43247949 None:intergenic 40.0%
AAAGGGCCATTTGATATGGC+AGG + Chr1:43246901-43246920 MsG0180002700.01.T01:CDS 45.0%
AAGGAGTTCACCACCTCATA+AGG + Chr1:43247246-43247265 MsG0180002700.01.T01:CDS 45.0%
AGGAGTTCACCACCTCATAA+GGG + Chr1:43247247-43247266 MsG0180002700.01.T01:CDS 45.0%
AGGTGTTTGATCGAGAATGG+AGG + Chr1:43247161-43247180 MsG0180002700.01.T01:CDS 45.0%
ATCTCGTCTCCCTTGATTCA+TGG + Chr1:43248642-43248661 MsG0180002700.01.T01:CDS 45.0%
ATTTGTGAAGATGCCTGCCA+TGG + Chr1:43248371-43248390 MsG0180002700.01.T01:intron 45.0%
CAGCTCCTACAAATGTACCT+TGG + Chr1:43247098-43247117 MsG0180002700.01.T01:intron 45.0%
CATCCATATGAACATCCCAG+CGG - Chr1:43248409-43248428 None:intergenic 45.0%
CATGCTCCTGCCATATCAAA+TGG - Chr1:43246910-43246929 None:intergenic 45.0%
CCCATCCAAGGTACATTTGT+AGG - Chr1:43247106-43247125 None:intergenic 45.0%
GACAGGTGTTTGATCGAGAA+TGG + Chr1:43247158-43247177 MsG0180002700.01.T01:CDS 45.0%
GATTGGACAGTTATCCCAGT+AGG - Chr1:43248714-43248733 None:intergenic 45.0%
GGCCTTTCTCTTCACCATAT+GGG - Chr1:43248129-43248148 None:intergenic 45.0%
GGTACGTGATTCAGATCTGT+GGG + Chr1:43246246-43246265 MsG0180002700.01.T01:CDS 45.0%
GTCTCAGGTTCGATTATCTC+TGG - Chr1:43249203-43249222 None:intergenic 45.0%
GTTGTATGTCAAGCAGGTAG+AGG + Chr1:43246753-43246772 MsG0180002700.01.T01:intron 45.0%
TACGTTGGCAGAAACCCATA+TGG + Chr1:43248112-43248131 MsG0180002700.01.T01:intron 45.0%
TGCAGGGAATGTAGCTAAGA+AGG - Chr1:43249467-43249486 None:intergenic 45.0%
TGGCCTTTCTCTTCACCATA+TGG - Chr1:43248130-43248149 None:intergenic 45.0%
TGGTACGTGATTCAGATCTG+TGG + Chr1:43246245-43246264 MsG0180002700.01.T01:CDS 45.0%
TTGGAGTATGCTCCTTCTCA+AGG - Chr1:43249225-43249244 None:intergenic 45.0%
TTGTTAAATGGCCGCTAAGG+AGG + Chr1:43248311-43248330 MsG0180002700.01.T01:intron 45.0%
! CACTACCGGCATCTTTTCAA+AGG + Chr1:43246945-43246964 MsG0180002700.01.T01:CDS 45.0%
! CGACAACATGGTTCTTTTGG+TGG + Chr1:43247962-43247981 MsG0180002700.01.T01:intron 45.0%
! CTTTGAAAAGATGCCGGTAG+TGG - Chr1:43246947-43246966 None:intergenic 45.0%
! GTGTTGTTAAATGGCCGCTA+AGG + Chr1:43248308-43248327 MsG0180002700.01.T01:intron 45.0%
! TCCCTTGTTGTATGTCAAGC+AGG + Chr1:43246747-43246766 MsG0180002700.01.T01:intron 45.0%
! TGATATGGCAGGAGCATGTT+TGG + Chr1:43246912-43246931 MsG0180002700.01.T01:CDS 45.0%
! TTGAGAAGGAGCATACTCCA+AGG + Chr1:43249224-43249243 MsG0180002700.01.T01:intron 45.0%
!! GGCTATCTTTTGGGGGAAAA+AGG + Chr1:43247227-43247246 MsG0180002700.01.T01:CDS 45.0%
!! AAATAAATATTAAGAAATAT+TGG + Chr1:43249099-43249118 MsG0180002700.01.T01:intron 5.0%
!! ATTAAAAACTAATAATAATT+TGG - Chr1:43246688-43246707 None:intergenic 5.0%
AAATGGCCGCTAAGGAGGAA+TGG + Chr1:43248316-43248335 MsG0180002700.01.T01:intron 50.0%
ATGCTCCTTCTCAAGGTCTC+AGG - Chr1:43249218-43249237 None:intergenic 50.0%
CATTCGGAGAACCCCTTATG+AGG - Chr1:43247262-43247281 None:intergenic 50.0%
CTTGGATGGGCCAAAAGACA+AGG + Chr1:43247116-43247135 MsG0180002700.01.T01:CDS 50.0%
GGAGTTCACCACCTCATAAG+GGG + Chr1:43247248-43247267 MsG0180002700.01.T01:CDS 50.0%
GGGATAACTGTCCAATCCTC+TGG + Chr1:43248717-43248736 MsG0180002700.01.T01:CDS 50.0%
TCGAACCTGAGACCTTGAGA+AGG + Chr1:43249210-43249229 MsG0180002700.01.T01:intron 50.0%
! CTTGTCTTTTGGCCCATCCA+AGG - Chr1:43247118-43247137 None:intergenic 50.0%
!! TAATGATGGGCTGTGGCCTA+AGG - Chr1:43247923-43247942 None:intergenic 50.0%
AGGCCGCTGGGATGTTCATA+TGG + Chr1:43248403-43248422 MsG0180002700.01.T01:intron 55.0%
ATGAACATCCCAGCGGCCTA+TGG - Chr1:43248402-43248421 None:intergenic 55.0%
GTCGCACCATTCCTCCTTAG+CGG - Chr1:43248325-43248344 None:intergenic 55.0%
TCGGAGAACCCCTTATGAGG+TGG - Chr1:43247259-43247278 None:intergenic 55.0%
TGTGAAGATGCCTGCCATGG+TGG + Chr1:43248374-43248393 MsG0180002700.01.T01:intron 55.0%
! GTGGTGTTAGCTTGGGACCT+TGG - Chr1:43249244-43249263 None:intergenic 55.0%
AGCGGCCTATGGCACCACCA+TGG - Chr1:43248391-43248410 None:intergenic 65.0%
GCCTATGGCACCACCATGGC+AGG - Chr1:43248387-43248406 None:intergenic 65.0%
!! ATGGTGGTGCCATAGGCCGC+TGG + Chr1:43248390-43248409 MsG0180002700.01.T01:intron 65.0%
!! GCCTGCCATGGTGGTGCCAT+AGG + Chr1:43248383-43248402 MsG0180002700.01.T01:intron 65.0%
!! TGGTGGTGCCATAGGCCGCT+GGG + Chr1:43248391-43248410 MsG0180002700.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 43246112 43249859 43246112 ID=MsG0180002700.01;Name=MsG0180002700.01
Chr1 mRNA 43246112 43249859 43246112 ID=MsG0180002700.01.T01;Parent=MsG0180002700.01;Name=MsG0180002700.01.T01;_AED=0.45;_eAED=0.55;_QI=0|0.5|0|1|0.5|0.4|5|0|443
Chr1 exon 43246112 43246354 43246112 ID=MsG0180002700.01.T01:exon:8406;Parent=MsG0180002700.01.T01
Chr1 exon 43246769 43246987 43246769 ID=MsG0180002700.01.T01:exon:8407;Parent=MsG0180002700.01.T01
Chr1 exon 43247101 43247298 43247101 ID=MsG0180002700.01.T01:exon:8408;Parent=MsG0180002700.01.T01
Chr1 exon 43248561 43248916 43248561 ID=MsG0180002700.01.T01:exon:8409;Parent=MsG0180002700.01.T01
Chr1 exon 43249544 43249859 43249544 ID=MsG0180002700.01.T01:exon:8410;Parent=MsG0180002700.01.T01
Chr1 CDS 43246112 43246354 43246112 ID=MsG0180002700.01.T01:cds;Parent=MsG0180002700.01.T01
Chr1 CDS 43246769 43246987 43246769 ID=MsG0180002700.01.T01:cds;Parent=MsG0180002700.01.T01
Chr1 CDS 43247101 43247298 43247101 ID=MsG0180002700.01.T01:cds;Parent=MsG0180002700.01.T01
Chr1 CDS 43248561 43248916 43248561 ID=MsG0180002700.01.T01:cds;Parent=MsG0180002700.01.T01
Chr1 CDS 43249544 43249859 43249544 ID=MsG0180002700.01.T01:cds;Parent=MsG0180002700.01.T01
Gene Sequence

>MsG0180002700.01.T01

ATGACAAACATTGAAATATGCTCAGGTTTATTTTCCCTAAGAAGGAAAATCGAAGACACAGTTATTCGCGCTGAGTTGTATGCATCAACAGCTTTGGAAATGGAAGAAGCAAGTTGGATTAAGCAGGAAGAAATGGTACGTGATTCAGATCTGTGGGATGACCCAACTAAGTCCAACGACATTCTTGTCAAGTTGGCTAACAGTGCCAAAGTAGTTGATTCTCTAAAGGACTTGAGATACAAGGTAGAGGAAGCACAGCTGATCAAGCAGTTAGCTGAGATGAATGTTATTGATTACGGGCTCTATAAACAAGCATATGATGCATCAATAGACGTGAGCAACATACTGGATCAGTATGAGATATCCAAGCTTCTTAAAGGGCCATTTGATATGGCAGGAGCATGTTTGGTTATAAAAGCCACTACCGGCATCTTTTCAAAGGTTTCATATATAAAGGATTTTCTCCTACAAATGTACCTTGGATGGGCCAAAAGACAAGGTTATGAAGGAAGGATTGTTGACAGGTGTTTGATCGAGAATGGAGGAATCAATTTAGCAACTATAGAGTTTGAATTTGAATGTGCTTATGGCTATCTTTTGGGGGAAAAAGGAGTTCACCACCTCATAAGGGGTTCTCCGAATGAATCTTCTCAGCTTGAGACTAGCACTGCAACTGTTGATGTTATTCCGTTGTTCCTAGAGAAATCTCGTGATCTTGAGATTGATTCCGAGGATTTGATTATCTCGTCTCCCTTGATTCATGGAGAACAGAAAAGGCAGACTCAGCCTATAGTTTGCATTCGTCATATACCTACTGGGATAACTGTCCAATCCTCTGGTATGCATATATCTGTGTTAAAATGTTTGCTTATTTTGTCTTCATCTAATTTCTTATTCCGTTTATTCTATATTCAAGTCCATTTGCCAGAACTTGCAAATGAAATTGATATGCCTTATATGACTGCTACTATTTCCTTTTTAGGCCATGGTGTAGTTGAGTTTGTATTTATATTAAGGATTTTACTGAATTACAATACTTTTTTTTTTCTTTGTAAAGGTGAGAGAAGCCAGTTTGCAAATAAGATGAAAGCACTAAACAGATTGAAAGCTAAACTTCAAGTGATAGCAATTGAACAAGGAGTTGGTAGTATAAATGGTATAGTGAAGGATAAAATTGTGAATCTGTGGGAAGAAAAAACTAGGAGGTATGTATCTCATCCATACAAGTTAGTACATGATGTAAAGACTGGCATTGAGATGTCAGATCTAAATACTGTTTTAGATGGGAATATTGGACCTCTTATTGCAGCTCATATTAATACTAGAGAGTAA

Protein sequence

>MsG0180002700.01.T01

MTNIEICSGLFSLRRKIEDTVIRAELYASTALEMEEASWIKQEEMVRDSDLWDDPTKSNDILVKLANSAKVVDSLKDLRYKVEEAQLIKQLAEMNVIDYGLYKQAYDASIDVSNILDQYEISKLLKGPFDMAGACLVIKATTGIFSKVSYIKDFLLQMYLGWAKRQGYEGRIVDRCLIENGGINLATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQLETSTATVDVIPLFLEKSRDLEIDSEDLIISSPLIHGEQKRQTQPIVCIRHIPTGITVQSSGMHISVLKCLLILSSSNFLFRLFYIQVHLPELANEIDMPYMTATISFLGHGVVEFVFILRILLNYNTFFFLCKGERSQFANKMKALNRLKAKLQVIAIEQGVGSINGIVKDKIVNLWEEKTRRYVSHPYKLVHDVKTGIEMSDLNTVLDGNIGPLIAAHINTRE*