AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028432.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028432.01.T01 MTR_5g071040 89.051 548 29 3 1 518 29 575 0.0 965
MsG0580028432.01.T01 MTR_5g071010 50.085 585 216 12 2 515 14 593 0.0 531
MsG0580028432.01.T01 MTR_5g082620 48.537 581 224 12 2 515 16 588 0.0 528
MsG0580028432.01.T01 MTR_3g070720 49.132 576 228 9 2 515 20 592 1.49e-179 518
MsG0580028432.01.T01 MTR_3g069280 47.314 577 228 9 3 515 7 571 1.26e-170 494
MsG0580028432.01.T01 MTR_5g082590 47.527 566 238 12 9 516 18 582 5.60e-170 493
MsG0580028432.01.T01 MTR_3g070710 45.581 577 242 14 3 515 18 586 8.71e-159 464
MsG0580028432.01.T01 MTR_5g082580 44.388 588 251 12 3 515 20 606 1.50e-155 457
MsG0580028432.01.T01 MTR_3g070560 44.774 574 249 13 3 513 17 585 2.38e-151 446
MsG0580028432.01.T01 MTR_3g070720 50.670 448 186 8 2 417 20 464 1.65e-143 422
MsG0580028432.01.T01 MTR_3g070720 50.330 455 190 9 2 423 20 471 3.16e-143 421
MsG0580028432.01.T01 MTR_3g070720 49.750 400 169 7 2 372 20 416 9.85e-122 363
MsG0580028432.01.T01 MTR_3g070560 45.388 412 169 8 156 513 3 412 1.40e-108 330
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028432.01.T01 AT3G08510 53.005 549 210 10 2 515 16 551 0.0 552
MsG0580028432.01.T01 AT3G08510 53.005 549 210 10 2 515 16 551 0.0 552
MsG0580028432.01.T01 AT5G58670 52.095 549 219 7 2 513 15 556 0.0 548
MsG0580028432.01.T01 AT3G08510 50.173 578 211 10 2 515 16 580 0.0 537
MsG0580028432.01.T01 AT3G08510 50.173 578 211 10 2 515 16 580 0.0 537
MsG0580028432.01.T01 AT4G38530 51.005 547 227 10 2 513 15 555 0.0 527
MsG0580028432.01.T01 AT3G55940 48.601 572 232 7 2 515 16 583 0.0 524
MsG0580028432.01.T01 AT2G40116 47.871 587 230 10 2 515 29 612 6.22e-175 506
MsG0580028432.01.T01 AT5G58700 47.323 579 238 13 2 515 20 596 1.56e-168 489
MsG0580028432.01.T01 AT5G58700 47.323 579 238 13 2 515 20 596 1.56e-168 489
MsG0580028432.01.T01 AT5G58690 45.504 556 251 11 9 515 6 558 1.08e-158 463
MsG0580028432.01.T01 AT5G58690 44.938 563 258 11 2 515 18 577 2.21e-158 463
MsG0580028432.01.T01 AT5G58690 44.938 563 258 11 2 515 18 577 2.21e-158 463
MsG0580028432.01.T01 AT5G58700 50.513 487 178 10 90 515 4 488 1.18e-153 448
MsG0580028432.01.T01 AT3G47290 36.803 538 274 12 15 516 24 531 7.59e-107 329
MsG0580028432.01.T01 AT3G47290 36.567 536 274 12 15 514 24 529 1.74e-102 319
MsG0580028432.01.T01 AT3G47220 36.477 562 272 18 2 516 8 531 1.34e-95 300

Find 116 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTGATGTGAATAATT+TGG 0.150823 5:-80439215 None:intergenic
ACATCATCTTCTCTAGAATT+TGG 0.156414 5:-80438607 None:intergenic
CTTCTTCCTCTTGTATCTTT+TGG 0.161223 5:-80439316 None:intergenic
CAATAACTTTAATGTGTAAT+AGG 0.165025 5:-80442868 None:intergenic
TGGGCATTATCTTCAATTTA+TGG 0.203485 5:+80440855 MsG0580028432.01.T01:CDS
TGCAATTAATTAGGATGAAT+TGG 0.230610 5:+80439655 MsG0580028432.01.T01:intron
GCCTTCTTTCGTTATCTCTT+TGG 0.233212 5:+80437804 MsG0580028432.01.T01:CDS
AGTGATTAGAAAATCGAAAT+TGG 0.251999 5:-80443024 None:intergenic
AAAATATTGTTGATTTCTTC+TGG 0.260165 5:-80437615 None:intergenic
TCCATTCATAGGATCATAAT+TGG 0.264986 5:-80440273 None:intergenic
ATGTGTAATAGGGCCAATTC+TGG 0.280305 5:-80442857 None:intergenic
GCCAATTCTGGATAAGTTAA+TGG 0.289150 5:-80442845 None:intergenic
AATATCATTCCCATGAGTTT+TGG 0.294974 5:-80439831 None:intergenic
CAATGTTCTACACTGCCTTT+TGG 0.297346 5:-80439746 None:intergenic
GTGAACTTTATAAGCATGTT+AGG 0.306118 5:+80442993 MsG0580028432.01.T01:CDS
TCCATTAACTTATCCAGAAT+TGG 0.320745 5:+80442844 MsG0580028432.01.T01:CDS
GAGATTGTTTGAATGCCATT+AGG 0.322747 5:+80438988 MsG0580028432.01.T01:CDS
GATCACCTATGGGGCCATTT+AGG 0.326314 5:-80437830 None:intergenic
TATCTCTTTGGTGACCTAAA+TGG 0.326337 5:+80437816 MsG0580028432.01.T01:CDS
GGGCACAACTCCTACTTAAC+TGG 0.341408 5:+80438499 MsG0580028432.01.T01:CDS
TCTTCAAAAGTTATTATAAC+AGG 0.350189 5:-80439038 None:intergenic
ATATTCTAAGCAAATTCCTT+TGG 0.356443 5:-80440223 None:intergenic
TTTAGCTCCTCATTCCAAAC+TGG 0.361381 5:-80442818 None:intergenic
AGATTGTTTGAATGCCATTA+GGG 0.371595 5:+80438989 MsG0580028432.01.T01:CDS
GTTGAAGAGGTGGAGTTATA+TGG 0.372195 5:-80439061 None:intergenic
AATAACTTTAATGTGTAATA+GGG 0.374082 5:-80442867 None:intergenic
GCAATTAATTAGGATGAATT+GGG 0.377967 5:+80439656 MsG0580028432.01.T01:intron
TATTCTAAGCAAATTCCTTT+GGG 0.392694 5:-80440222 None:intergenic
TTCCTTGGTCCTAGTTACTT+TGG 0.403790 5:-80442783 None:intergenic
AAGATGAGTGGGTCCCAGTT+TGG 0.404309 5:+80442804 MsG0580028432.01.T01:CDS
ACTTTGGTGTCCGTATCAAC+TGG 0.413362 5:-80442767 None:intergenic
TTCTTTGGTCGGTATACTCT+AGG 0.420475 5:-80440958 None:intergenic
CCCTTCAACGATTCTGGTGA+AGG 0.423001 5:-80439245 None:intergenic
ATCAAATGCATTGTCCCTAA+TGG 0.423947 5:-80439003 None:intergenic
TCCAATTATGATCCTATGAA+TGG 0.426154 5:+80440272 MsG0580028432.01.T01:CDS
CCATGCATCCATCCATTCAT+AGG 0.428096 5:-80440284 None:intergenic
GCTTATAAAGTTCACCTTTG+CGG 0.428659 5:-80442985 None:intergenic
CAATTGATTTCCAGTTAAGT+AGG 0.432841 5:-80438509 None:intergenic
AAAATTTACCTGATCACCTA+TGG 0.438210 5:-80437841 None:intergenic
CCGACCAAAGAAAACTCTTC+AGG 0.446765 5:+80440969 MsG0580028432.01.T01:CDS
AATTTGATTTCTATACATGC+TGG 0.454192 5:+80439719 MsG0580028432.01.T01:CDS
AAATGGCCCCATAGGTGATC+AGG 0.455038 5:+80437833 MsG0580028432.01.T01:CDS
TGATGGAACATGATCAAGTT+AGG 0.457893 5:+80439771 MsG0580028432.01.T01:CDS
CCTTCTCTTAGCTCTGATAC+AGG 0.458858 5:-80442938 None:intergenic
TTATTGTTCAATAAGATGTC+AGG 0.460630 5:-80440922 None:intergenic
GAATCCACACGTGAACCCTT+TGG 0.470657 5:-80440248 None:intergenic
AATGGTAGCATTTAATATGC+AGG 0.472930 5:+80440313 MsG0580028432.01.T01:CDS
CAATAGAATGTTTAAGCTCA+AGG 0.474052 5:+80437581 None:intergenic
CCCTTCACCAGAATCGTTGA+AGG 0.478338 5:+80439244 MsG0580028432.01.T01:CDS
CTCATGGGAATGATATTGTC+AGG 0.481646 5:+80439837 MsG0580028432.01.T01:CDS
GAGTAATTGAGTTGGATTTG+TGG 0.483851 5:+80438584 MsG0580028432.01.T01:CDS
AGGAGTTAGAGTAATTGAGT+TGG 0.488235 5:+80438576 MsG0580028432.01.T01:CDS
GAGGAGGAGGATGAGACTCT+TGG 0.488999 5:+80439689 MsG0580028432.01.T01:CDS
GAAGAAATCGCCAAAACTCA+TGG 0.491346 5:+80439821 MsG0580028432.01.T01:CDS
TTCAAAGCCAATGGTGGATG+TGG 0.497499 5:+80440886 MsG0580028432.01.T01:CDS
CAGTGTAGAACATTGGTTGA+TGG 0.501692 5:+80439754 MsG0580028432.01.T01:CDS
ATGGTGGATGATATATTTAG+AGG 0.505987 5:+80439179 MsG0580028432.01.T01:CDS
AACATACCCACATCCACCAT+TGG 0.508710 5:-80440893 None:intergenic
TCAAGATATGAATGCTCCAT+TGG 0.508763 5:+80438456 MsG0580028432.01.T01:CDS
TGGGACCCACTCATCTTCCT+TGG 0.515917 5:-80442798 None:intergenic
CTCAATATATTTCAAAGAAG+AGG 0.516565 5:+80437768 MsG0580028432.01.T01:CDS
TATTATAACAGGATACTTTG+AGG 0.519500 5:-80439027 None:intergenic
GCGACTTTGCGTTGAAGAGG+TGG 0.519693 5:-80439071 None:intergenic
CTTTGACTTTCAGGAGACTC+CGG 0.522060 5:-80439293 None:intergenic
CCATGGTGTTCCAGTTGATA+CGG 0.526801 5:+80442757 MsG0580028432.01.T01:CDS
CATTATCTTCAATTTATGGA+AGG 0.529543 5:+80440859 MsG0580028432.01.T01:CDS
TTGCTTAGAATATATCCAAA+GGG 0.535506 5:+80440233 MsG0580028432.01.T01:CDS
ATACATGCTGGGAAGCCAAA+AGG 0.537988 5:+80439731 MsG0580028432.01.T01:CDS
ATGGATGCATGGAGCTCAAA+TGG 0.541893 5:+80440295 MsG0580028432.01.T01:CDS
AAATTTACCTGATCACCTAT+GGG 0.546547 5:-80437840 None:intergenic
GGTGACCTAAATGGCCCCAT+AGG 0.558499 5:+80437825 MsG0580028432.01.T01:CDS
ATTTGATTTCTATACATGCT+GGG 0.559181 5:+80439720 MsG0580028432.01.T01:CDS
ACCAAAGAGATAACGAAAGA+AGG 0.560155 5:-80437805 None:intergenic
TTGCTTGAGGACAAAGATGA+TGG 0.561570 5:+80439344 MsG0580028432.01.T01:CDS
ATTGTGCAGGTTGGTATCCA+TGG 0.563061 5:+80442740 MsG0580028432.01.T01:intron
TCTGATTTCAACAAAACCAC+CGG 0.570063 5:+80439274 MsG0580028432.01.T01:CDS
CCTTCAACGATTCTGGTGAA+GGG 0.570918 5:-80439244 None:intergenic
CATGCTTTAGATTCACCCAA+AGG 0.572447 5:+80440207 MsG0580028432.01.T01:intron
GGAAGAAGTTGAGTTGCTTG+AGG 0.573929 5:+80439331 MsG0580028432.01.T01:CDS
GGGTGATGAAAGTGAGGAGG+AGG 0.575323 5:+80439676 MsG0580028432.01.T01:CDS
TTTGCTTAGAATATATCCAA+AGG 0.575916 5:+80440232 MsG0580028432.01.T01:CDS
AAGAAATCGCCAAAACTCAT+GGG 0.576013 5:+80439822 MsG0580028432.01.T01:CDS
TTGGCGACTTTGCGTTGAAG+AGG 0.577736 5:-80439074 None:intergenic
ATTATGATCCTATGAATGGA+TGG 0.583921 5:+80440276 MsG0580028432.01.T01:CDS
CCTTCACCAGAATCGTTGAA+GGG 0.585970 5:+80439245 MsG0580028432.01.T01:CDS
TTAGCTCCTCATTCCAAACT+GGG 0.586949 5:-80442817 None:intergenic
ATGTGGAAGTTCGTCATGGA+GGG 0.587464 5:+80438626 MsG0580028432.01.T01:CDS
ATTCATAGGATCATAATTGG+AGG 0.587604 5:-80440270 None:intergenic
GTGGGTCCCAGTTTGGAATG+AGG 0.590724 5:+80442811 MsG0580028432.01.T01:CDS
CACCAAAGTAACTAGGACCA+AGG 0.591110 5:+80442781 MsG0580028432.01.T01:CDS
TCAAAGCCAAAAGATACAAG+AGG 0.594050 5:+80439310 MsG0580028432.01.T01:CDS
GAAGGAATGTTCAAAGCCAA+TGG 0.594868 5:+80440877 MsG0580028432.01.T01:CDS
AAAGTAGTACAATTCATCCA+TGG 0.596287 5:-80437667 None:intergenic
CCTATGAATGGATGGATGCA+TGG 0.600723 5:+80440284 MsG0580028432.01.T01:CDS
CAAAAGGCAGTGTAGAACAT+TGG 0.603640 5:+80439747 MsG0580028432.01.T01:CDS
ATATTGTTGATTTCTTCTGG+TGG 0.604922 5:-80437612 None:intergenic
GTACAATTCATCCATGGTCA+TGG 0.605855 5:-80437661 None:intergenic
ATACGGACACCAAAGTAACT+AGG 0.608090 5:+80442774 MsG0580028432.01.T01:CDS
CCTGTATCAGAGCTAAGAGA+AGG 0.619949 5:+80442938 MsG0580028432.01.T01:CDS
TAGGACCAAGGAAGATGAGT+GGG 0.620046 5:+80442793 MsG0580028432.01.T01:CDS
CTTCACCAGAATCGTTGAAG+GGG 0.622267 5:+80439246 MsG0580028432.01.T01:CDS
ATATCCAAAGGGTTCACGTG+TGG 0.629079 5:+80440244 MsG0580028432.01.T01:CDS
GTTCGTTTATGTAACCGCAA+AGG 0.630405 5:+80442971 MsG0580028432.01.T01:CDS
TGACTTTCAGGAGACTCCGG+TGG 0.638079 5:-80439290 None:intergenic
GATGATGTGGAAGTTCGTCA+TGG 0.639310 5:+80438622 MsG0580028432.01.T01:CDS
GGAATGTTCAAAGCCAATGG+TGG 0.642892 5:+80440880 MsG0580028432.01.T01:CDS
TGAATTGGGTGATGAAAGTG+AGG 0.645890 5:+80439670 MsG0580028432.01.T01:CDS
AAATTCTAGAGAAGATGATG+TGG 0.650989 5:+80438609 MsG0580028432.01.T01:CDS
CCGTATCAACTGGAACACCA+TGG 0.663716 5:-80442757 None:intergenic
GATGTGGAAGTTCGTCATGG+AGG 0.680496 5:+80438625 MsG0580028432.01.T01:CDS
CTAGGACCAAGGAAGATGAG+TGG 0.682226 5:+80442792 MsG0580028432.01.T01:CDS
TCAAAGCCAATGGTGGATGT+GGG 0.703468 5:+80440887 MsG0580028432.01.T01:CDS
TGGATCTAGAGTCAATGATG+AGG 0.706973 5:+80439364 MsG0580028432.01.T01:CDS
ATTGGGTGATGAAAGTGAGG+AGG 0.710688 5:+80439673 MsG0580028432.01.T01:CDS
AATTTACCTGATCACCTATG+GGG 0.721386 5:-80437839 None:intergenic
TAGAATGTTTAAGCTCAAGG+TGG 0.727418 5:+80437584 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATTGTAATTGTTA+AGG - Chr5:80438413-80438432 None:intergenic 10.0%
!! TCCTATTTATTTATAAATTT+GGG + Chr5:80440693-80440712 MsG0580028432.01.T01:intron 10.0%
!! TGAATTTGATAAATAATTTA+GGG + Chr5:80439446-80439465 MsG0580028432.01.T01:intron 10.0%
!! TTAAATATAAGAAGTAAATT+AGG + Chr5:80440474-80440493 MsG0580028432.01.T01:intron 10.0%
!! TTCCTATTTATTTATAAATT+TGG + Chr5:80440692-80440711 MsG0580028432.01.T01:intron 10.0%
!! TTTAATAAATAGGTATTAAT+AGG - Chr5:80442016-80442035 None:intergenic 10.0%
!!! AAATCAACAATATTTTTAAT+AGG + Chr5:80437622-80437641 MsG0580028432.01.T01:CDS 10.0%
!!! AATATTTTTTGCAATTAATT+AGG + Chr5:80439646-80439665 MsG0580028432.01.T01:intron 10.0%
!!! ATAATTTTGTTTTACTTAAA+GGG + Chr5:80440829-80440848 MsG0580028432.01.T01:intron 10.0%
!!! ATATTTGATTTTTTTATTTC+AGG + Chr5:80438429-80438448 MsG0580028432.01.T01:intron 10.0%
!!! CTTTTTAATTTAAAAAACAA+AGG + Chr5:80439539-80439558 MsG0580028432.01.T01:intron 10.0%
!!! TAAATATTTGAAATAATTTG+TGG - Chr5:80441562-80441581 None:intergenic 10.0%
!!! TATAATTTTGTTTTACTTAA+AGG + Chr5:80440828-80440847 MsG0580028432.01.T01:intron 10.0%
!!! TATCTTTTTTTTTTTTTTGA+AGG + Chr5:80441318-80441337 MsG0580028432.01.T01:intron 10.0%
!!! TTTTTTATATTAGATATACT+TGG - Chr5:80441077-80441096 None:intergenic 10.0%
!! AACTACATTAAAAATAATTG+AGG - Chr5:80439922-80439941 None:intergenic 15.0%
!! AATAACTTTAATGTGTAATA+GGG - Chr5:80442870-80442889 None:intergenic 15.0%
!! ATAGAAATAAATAAAGTTTG+AGG + Chr5:80440717-80440736 MsG0580028432.01.T01:intron 15.0%
!! ATTAATATTTATAATGCAGA+TGG + Chr5:80439160-80439179 MsG0580028432.01.T01:intron 15.0%
!! GTAACAATTAATTAACAATA+GGG - Chr5:80440166-80440185 None:intergenic 15.0%
!! GTGAATTTGATAAATAATTT+AGG + Chr5:80439445-80439464 MsG0580028432.01.T01:intron 15.0%
!! TATAAAAAATTTCATATGTG+AGG + Chr5:80442353-80442372 MsG0580028432.01.T01:intron 15.0%
!! TCAAATACTACAAATTTATT+CGG + Chr5:80438129-80438148 MsG0580028432.01.T01:intron 15.0%
!! TCCCAAATTTATAAATAAAT+AGG - Chr5:80440697-80440716 None:intergenic 15.0%
!! TGTAACAATTAATTAACAAT+AGG - Chr5:80440167-80440186 None:intergenic 15.0%
!!! AAAAAAAAAAGTGTAACAAA+TGG + Chr5:80439576-80439595 MsG0580028432.01.T01:intron 15.0%
!!! AAAAACATACATATATCTTT+TGG + Chr5:80438376-80438395 MsG0580028432.01.T01:intron 15.0%
!!! AAAAGATATATGTATGTTTT+TGG - Chr5:80438377-80438396 None:intergenic 15.0%
!!! ATTATGAAAATAGTTTTCTT+TGG - Chr5:80440583-80440602 None:intergenic 15.0%
!!! ATTTTGAAGTACATATTTAT+AGG - Chr5:80439516-80439535 None:intergenic 15.0%
!!! GTTTTATAATAACTTTCAAA+AGG + Chr5:80440440-80440459 MsG0580028432.01.T01:intron 15.0%
!!! TAAGCAAAAATTCATTTTTT+AGG - Chr5:80441911-80441930 None:intergenic 15.0%
!!! TCCATTTCTTATTTATTAAT+TGG + Chr5:80440792-80440811 MsG0580028432.01.T01:intron 15.0%
!!! TTATATATAATTCTGAAAGT+TGG - Chr5:80438910-80438929 None:intergenic 15.0%
!!! TTTTTAAAAACTGCATAATT+TGG - Chr5:80438767-80438786 None:intergenic 15.0%
!! AAATTTACTTGTAGTGAAAT+AGG + Chr5:80442156-80442175 MsG0580028432.01.T01:intron 20.0%
!! AATAAAAATCAAAGTGTGTT+TGG - Chr5:80441160-80441179 None:intergenic 20.0%
!! AATGACACATTGATATAATT+AGG + Chr5:80441664-80441683 MsG0580028432.01.T01:intron 20.0%
!! ACATAATTCAGTGTAATTAT+AGG + Chr5:80437960-80437979 MsG0580028432.01.T01:intron 20.0%
!! ATAACAACAAAACATGTTAA+AGG - Chr5:80442107-80442126 None:intergenic 20.0%
!! ATATCTACCATAAGTAAATA+CGG - Chr5:80442582-80442601 None:intergenic 20.0%
!! ATGACACATTGATATAATTA+GGG + Chr5:80441665-80441684 MsG0580028432.01.T01:intron 20.0%
!! CAATAACTTTAATGTGTAAT+AGG - Chr5:80442871-80442890 None:intergenic 20.0%
!! GCCAATTAATAAATAAGAAA+TGG - Chr5:80440796-80440815 None:intergenic 20.0%
!! TCTTCAAAAGTTATTATAAC+AGG - Chr5:80439041-80439060 None:intergenic 20.0%
!! TGCAAAAAATTTACAAACTT+TGG - Chr5:80439096-80439115 None:intergenic 20.0%
!! TTCATTTGATGTGAATAATT+TGG - Chr5:80439218-80439237 None:intergenic 20.0%
!! TTTAATAGGTATGCAAAAAA+TGG + Chr5:80437636-80437655 MsG0580028432.01.T01:CDS 20.0%
!!! AAAATATTGTTGATTTCTTC+TGG - Chr5:80437618-80437637 None:intergenic 20.0%
!!! ACAAATAGTACATTTTAGTT+CGG + Chr5:80442655-80442674 MsG0580028432.01.T01:intron 20.0%
!!! ACTATTTTCATAATCACATA+TGG + Chr5:80440589-80440608 MsG0580028432.01.T01:intron 20.0%
!!! ATAATAAAAGCTCTGAAAAA+AGG + Chr5:80438556-80438575 MsG0580028432.01.T01:CDS 20.0%
!!! ATGAAAATATCTTGTTATGA+TGG + Chr5:80441345-80441364 MsG0580028432.01.T01:intron 20.0%
!!! ATTATACTTTTGATTGTGAT+TGG + Chr5:80441206-80441225 MsG0580028432.01.T01:intron 20.0%
!!! ATTTAATTTCACTTTGCTTA+TGG + Chr5:80439395-80439414 MsG0580028432.01.T01:intron 20.0%
!!! TAAGCAAAAATTCACTTTTT+AGG + Chr5:80441822-80441841 MsG0580028432.01.T01:intron 20.0%
!!! TACTTTTTAGTTGATTTTCA+AGG + Chr5:80437684-80437703 MsG0580028432.01.T01:CDS 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - Chr5:80437941-80437960 None:intergenic 20.0%
!!! TTAACATGTTTTGTTGTTAT+AGG + Chr5:80442107-80442126 MsG0580028432.01.T01:intron 20.0%
!!! TTTAATTTCACTTTGCTTAT+GGG + Chr5:80439396-80439415 MsG0580028432.01.T01:intron 20.0%
!!! TTTTAGACTATGATATATAG+TGG - Chr5:80439128-80439147 None:intergenic 20.0%
!!! TTTTCAGAGCTTTTATTATT+GGG - Chr5:80438555-80438574 None:intergenic 20.0%
!!! TTTTTCAGAGCTTTTATTAT+TGG - Chr5:80438556-80438575 None:intergenic 20.0%
! AAGTATGATGAAACCTTAAT+TGG - Chr5:80440016-80440035 None:intergenic 25.0%
! AATATTTATAATGCAGATGG+TGG + Chr5:80439163-80439182 MsG0580028432.01.T01:intron 25.0%
! AATGACTTCACAATTATACA+GGG - Chr5:80442414-80442433 None:intergenic 25.0%
! ACATTGATATAATTAGGGTT+GGG + Chr5:80441670-80441689 MsG0580028432.01.T01:intron 25.0%
! AGTGATTAGAAAATCGAAAT+TGG - Chr5:80443027-80443046 None:intergenic 25.0%
! ATAAATAGGTATTAATAGGC+CGG - Chr5:80442012-80442031 None:intergenic 25.0%
! ATATTCTAAGCAAATTCCTT+TGG - Chr5:80440226-80440245 None:intergenic 25.0%
! ATATTGACACGTTATAATTG+AGG - Chr5:80442722-80442741 None:intergenic 25.0%
! ATTGTGATTGGAATGATTTA+AGG + Chr5:80441218-80441237 MsG0580028432.01.T01:intron 25.0%
! CATAGATAATAAGGATAAAC+TGG - Chr5:80437870-80437889 None:intergenic 25.0%
! CATTATCTTCAATTTATGGA+AGG + Chr5:80440859-80440878 MsG0580028432.01.T01:CDS 25.0%
! CATTCAATAAATGATGTATG+TGG + Chr5:80441847-80441866 MsG0580028432.01.T01:intron 25.0%
! CCTATTTATAAGCAAAAGTT+AGG + Chr5:80438234-80438253 MsG0580028432.01.T01:intron 25.0%
! CTCAAGTTTCTCTTATAAAT+AGG + Chr5:80438316-80438335 MsG0580028432.01.T01:intron 25.0%
! CTCAATATATTTCAAAGAAG+AGG + Chr5:80437768-80437787 MsG0580028432.01.T01:CDS 25.0%
! CTTCAGTATATAAAGTAAGA+TGG - Chr5:80441054-80441073 None:intergenic 25.0%
! GCAATTAATTAGGATGAATT+GGG + Chr5:80439656-80439675 MsG0580028432.01.T01:intron 25.0%
! TAATGACTTCACAATTATAC+AGG - Chr5:80442415-80442434 None:intergenic 25.0%
! TACAAAAAATAATGAGCCAA+TGG - Chr5:80438475-80438494 None:intergenic 25.0%
! TATTATAACAGGATACTTTG+AGG - Chr5:80439030-80439049 None:intergenic 25.0%
! TATTCTAAGCAAATTCCTTT+GGG - Chr5:80440225-80440244 None:intergenic 25.0%
! TCAACAAAAATTGATGTATC+TGG - Chr5:80438296-80438315 None:intergenic 25.0%
! TCTCTCAATTGTCAAATAAA+TGG - Chr5:80440353-80440372 None:intergenic 25.0%
! TGATAATAAGTTATGAAGCA+CGG - Chr5:80438060-80438079 None:intergenic 25.0%
! TGCAATTAATTAGGATGAAT+TGG + Chr5:80439655-80439674 MsG0580028432.01.T01:intron 25.0%
! TGTAATTGTTAAGGATTTAG+TGG - Chr5:80438404-80438423 None:intergenic 25.0%
! TTATTGTTCAATAAGATGTC+AGG - Chr5:80440925-80440944 None:intergenic 25.0%
! TTCAGGCATACTTTATATTA+AGG - Chr5:80442244-80442263 None:intergenic 25.0%
! TTGCTTAGAATATATCCAAA+GGG + Chr5:80440233-80440252 MsG0580028432.01.T01:CDS 25.0%
! TTTGCTTAGAATATATCCAA+AGG + Chr5:80440232-80440251 MsG0580028432.01.T01:CDS 25.0%
!! AATTTGATTTCTATACATGC+TGG + Chr5:80439719-80439738 MsG0580028432.01.T01:CDS 25.0%
!! ATTTGATTTCTATACATGCT+GGG + Chr5:80439720-80439739 MsG0580028432.01.T01:CDS 25.0%
!! ATTTTCATAATCACATATGG+CGG + Chr5:80440592-80440611 MsG0580028432.01.T01:intron 25.0%
!! CCTAACTTTTGCTTATAAAT+AGG - Chr5:80438237-80438256 None:intergenic 25.0%
!! GAAACCTTAATTGGTATTTT+GGG - Chr5:80440007-80440026 None:intergenic 25.0%
!! TATGAAGCACAAATACTTTT+TGG + Chr5:80438668-80438687 MsG0580028432.01.T01:intron 25.0%
!! TCTAAAACCGTATTTACTTA+TGG + Chr5:80442572-80442591 MsG0580028432.01.T01:intron 25.0%
!! TGAAACCTTAATTGGTATTT+TGG - Chr5:80440008-80440027 None:intergenic 25.0%
!! TTGAAATAATTTGTGGTGTT+TGG - Chr5:80441555-80441574 None:intergenic 25.0%
!! TTTGGTGTAATTATATGTGT+TGG - Chr5:80438749-80438768 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + Chr5:80441921-80441940 MsG0580028432.01.T01:intron 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - Chr5:80441940-80441921 None:intergenic 25.0%
!!! AAGCTCTAAGATATTTTCAT+AGG - Chr5:80441442-80441461 None:intergenic 25.0%
!!! CATGTTACATTCTTAGTTTT+AGG - Chr5:80440518-80440537 None:intergenic 25.0%
!!! CTCATTATTTTTTGTACACA+GGG + Chr5:80438479-80438498 MsG0580028432.01.T01:CDS 25.0%
!!! TATTGAGATGTTTTAAACTG+TGG - Chr5:80437755-80437774 None:intergenic 25.0%
AAAAGTCTGTTAAGCCTAAT+AGG + Chr5:80441986-80442005 MsG0580028432.01.T01:intron 30.0%
AAAATTTACCTGATCACCTA+TGG - Chr5:80437844-80437863 None:intergenic 30.0%
AAAGAAAACTCTTCAGGTAA+AGG + Chr5:80440975-80440994 MsG0580028432.01.T01:intron 30.0%
AAAGTAGTACAATTCATCCA+TGG - Chr5:80437670-80437689 None:intergenic 30.0%
AAATTTACCTGATCACCTAT+GGG - Chr5:80437843-80437862 None:intergenic 30.0%
AAGAAAACTCTTCAGGTAAA+GGG + Chr5:80440976-80440995 MsG0580028432.01.T01:intron 30.0%
AATGGTAGCATTTAATATGC+AGG + Chr5:80440313-80440332 MsG0580028432.01.T01:CDS 30.0%
ACTTGAAAGAAACAAGTGTA+GGG - Chr5:80442448-80442467 None:intergenic 30.0%
AGATTGTTTGAATGCCATTA+GGG + Chr5:80438989-80439008 MsG0580028432.01.T01:CDS 30.0%
ATAACATACGAACAATTGCA+TGG - Chr5:80440655-80440674 None:intergenic 30.0%
ATAGTATATCTTGAATCAGC+TGG + Chr5:80439603-80439622 MsG0580028432.01.T01:intron 30.0%
ATATAATTAGGGTTGGGAAT+AGG + Chr5:80441676-80441695 MsG0580028432.01.T01:intron 30.0%
ATCATACTTCAAGCTTGTAT+TGG + Chr5:80440027-80440046 MsG0580028432.01.T01:intron 30.0%
ATGACTTCACAATTATACAG+GGG - Chr5:80442413-80442432 None:intergenic 30.0%
ATTATGATCCTATGAATGGA+TGG + Chr5:80440276-80440295 MsG0580028432.01.T01:CDS 30.0%
ATTCATAGGATCATAATTGG+AGG - Chr5:80440273-80440292 None:intergenic 30.0%
CACATTGATATAATTAGGGT+TGG + Chr5:80441669-80441688 MsG0580028432.01.T01:intron 30.0%
CATTCAATAAATGATGCATG+TGG - Chr5:80441886-80441905 None:intergenic 30.0%
CCAAACAATTCTTGCATATA+TGG - Chr5:80440102-80440121 None:intergenic 30.0%
CCACAAACATGAAAATTGAA+GGG + Chr5:80442526-80442545 MsG0580028432.01.T01:intron 30.0%
CCATATATGCAAGAATTGTT+TGG + Chr5:80440099-80440118 MsG0580028432.01.T01:intron 30.0%
CTAACCCAAAATACCAATTA+AGG + Chr5:80440000-80440019 MsG0580028432.01.T01:intron 30.0%
GGGTGTATGTTTAGTTAAAT+AGG + Chr5:80441945-80441964 MsG0580028432.01.T01:intron 30.0%
GTACTTATGAGACTATATGA+TGG + Chr5:80441283-80441302 MsG0580028432.01.T01:intron 30.0%
GTGAACTTTATAAGCATGTT+AGG + Chr5:80442993-80443012 MsG0580028432.01.T01:CDS 30.0%
GTTCATTTGACCTACTAAAT+AGG - Chr5:80442211-80442230 None:intergenic 30.0%
GTTTCTCTTATAAATAGGAC+CGG + Chr5:80438321-80438340 MsG0580028432.01.T01:intron 30.0%
TACTTGAAAGAAACAAGTGT+AGG - Chr5:80442449-80442468 None:intergenic 30.0%
TAGTATATCTTGAATCAGCT+GGG + Chr5:80439604-80439623 MsG0580028432.01.T01:intron 30.0%
TAGTTAAATAGGTCAGACTT+AGG + Chr5:80441956-80441975 MsG0580028432.01.T01:intron 30.0%
TATAAAGTATGCCTGAAAGT+AGG + Chr5:80442247-80442266 MsG0580028432.01.T01:intron 30.0%
TATCAAAATTATACTCCCTC+TGG + Chr5:80438210-80438229 MsG0580028432.01.T01:intron 30.0%
TATTGAAAACCTATGAAGCA+CGG - Chr5:80438835-80438854 None:intergenic 30.0%
TCAACAATGTGCTACAATAT+TGG - Chr5:80438874-80438893 None:intergenic 30.0%
TCATACTTCAAGCTTGTATT+GGG + Chr5:80440028-80440047 MsG0580028432.01.T01:intron 30.0%
TCCAATTATGATCCTATGAA+TGG + Chr5:80440272-80440291 MsG0580028432.01.T01:CDS 30.0%
TCCATTAACTTATCCAGAAT+TGG + Chr5:80442844-80442863 MsG0580028432.01.T01:CDS 30.0%
TCCATTCATAGGATCATAAT+TGG - Chr5:80440276-80440295 None:intergenic 30.0%
TCCTTATTATCTATGAAGCA+CGG + Chr5:80437875-80437894 MsG0580028432.01.T01:intron 30.0%
TGATGTAGTGTACTTATACA+AGG - Chr5:80440068-80440087 None:intergenic 30.0%
TGGATGCAAGTTGTTATAAT+AGG - Chr5:80440563-80440582 None:intergenic 30.0%
TGGGCATTATCTTCAATTTA+TGG + Chr5:80440855-80440874 MsG0580028432.01.T01:CDS 30.0%
TTCAGTGTAATTATAGGTGA+CGG + Chr5:80437966-80437985 MsG0580028432.01.T01:intron 30.0%
! AAACATCTTGAGCATGTTTT+TGG - Chr5:80437731-80437750 None:intergenic 30.0%
! AAATTCTAGAGAAGATGATG+TGG + Chr5:80438609-80438628 MsG0580028432.01.T01:CDS 30.0%
! AACATCTTGAGCATGTTTTT+GGG - Chr5:80437730-80437749 None:intergenic 30.0%
! AATATCATTCCCATGAGTTT+TGG - Chr5:80439834-80439853 None:intergenic 30.0%
! CAATTGATTTCCAGTTAAGT+AGG - Chr5:80438512-80438531 None:intergenic 30.0%
! CCTTCAATTTTCATGTTTGT+GGG - Chr5:80442528-80442547 None:intergenic 30.0%
! CTTCAATTTTCATGTTTGTG+GGG - Chr5:80442527-80442546 None:intergenic 30.0%
! GCTGATTCAAGATATACTAT+AGG - Chr5:80439603-80439622 None:intergenic 30.0%
! TATTTTCATAGGCAATCTTG+AGG - Chr5:80441431-80441450 None:intergenic 30.0%
! TGTTTTACTTAAAGGGACAT+GGG + Chr5:80440836-80440855 MsG0580028432.01.T01:intron 30.0%
! TTTACCTGAAGAGTTTTCTT+TGG - Chr5:80440976-80440995 None:intergenic 30.0%
! TTTCTAAAAAGTCTAAGCCT+AGG - Chr5:80441780-80441799 None:intergenic 30.0%
!! ACATCATCTTCTCTAGAATT+TGG - Chr5:80438610-80438629 None:intergenic 30.0%
!! AGTGAAATAGGCTTTTAAGT+AGG + Chr5:80442168-80442187 MsG0580028432.01.T01:intron 30.0%
!! AGTTGATTTTCAAGGAGAAA+AGG + Chr5:80437692-80437711 MsG0580028432.01.T01:CDS 30.0%
!! ATATTGTTGATTTCTTCTGG+TGG - Chr5:80437615-80437634 None:intergenic 30.0%
!! ATGGTGGATGATATATTTAG+AGG + Chr5:80439179-80439198 MsG0580028432.01.T01:CDS 30.0%
!! GCACAAATACTTTTTGGATA+AGG + Chr5:80438674-80438693 MsG0580028432.01.T01:intron 30.0%
!! GTTGATTTTCAAGGAGAAAA+GGG + Chr5:80437693-80437712 MsG0580028432.01.T01:CDS 30.0%
!! GTTGTTATAGGCTTTTAAGT+AGG + Chr5:80442119-80442138 MsG0580028432.01.T01:intron 30.0%
!! TTGTTTTACTTAAAGGGACA+TGG + Chr5:80440835-80440854 MsG0580028432.01.T01:intron 30.0%
!! TTTTTAGAAAGTACACCTTC+CGG + Chr5:80441790-80441809 MsG0580028432.01.T01:intron 30.0%
!!! AAGTTTGAGGATTTTTTTGC+AGG + Chr5:80440730-80440749 MsG0580028432.01.T01:intron 30.0%
!!! AGTTTGAGGATTTTTTTGCA+GGG + Chr5:80440731-80440750 MsG0580028432.01.T01:intron 30.0%
!!! ATTTTTTATAAGCCTGAGTC+TGG - Chr5:80442343-80442362 None:intergenic 30.0%
!!! GCTCATTATTTTTTGTACAC+AGG + Chr5:80438478-80438497 MsG0580028432.01.T01:CDS 30.0%
!!! TGTATGTTTTTGGCTCTATT+TGG - Chr5:80438367-80438386 None:intergenic 30.0%
!!! TTGACTTATTTTTGAGCTGT+AGG + Chr5:80438940-80438959 MsG0580028432.01.T01:intron 30.0%
AAAAAATGGTACCATGACCA+TGG + Chr5:80437650-80437669 MsG0580028432.01.T01:CDS 35.0%
AAAAAGTCATATACTCCCTC+CGG - Chr5:80438343-80438362 None:intergenic 35.0%
AAAACAGGTTCACGTATACA+TGG + Chr5:80441109-80441128 MsG0580028432.01.T01:intron 35.0%
AAACAGGTTCACGTATACAT+GGG + Chr5:80441110-80441129 MsG0580028432.01.T01:intron 35.0%
AAGAAATCGCCAAAACTCAT+GGG + Chr5:80439822-80439841 MsG0580028432.01.T01:CDS 35.0%
AATTTACCTGATCACCTATG+GGG - Chr5:80437842-80437861 None:intergenic 35.0%
ACCAAAGAGATAACGAAAGA+AGG - Chr5:80437808-80437827 None:intergenic 35.0%
ACCTACTAAATAGGCTAAAC+AGG - Chr5:80442202-80442221 None:intergenic 35.0%
ACCTATTTAAAAGTCTGGAC+TGG - Chr5:80442281-80442300 None:intergenic 35.0%
ACCTGACCTATTTAAAAGTC+TGG - Chr5:80442286-80442305 None:intergenic 35.0%
AGGAGTTAGAGTAATTGAGT+TGG + Chr5:80438576-80438595 MsG0580028432.01.T01:CDS 35.0%
AGTATATCTTGAATCAGCTG+GGG + Chr5:80439605-80439624 MsG0580028432.01.T01:intron 35.0%
ATAACGTGTCAATATTGTGC+AGG + Chr5:80442727-80442746 MsG0580028432.01.T01:intron 35.0%
ATCAAATGCATTGTCCCTAA+TGG - Chr5:80439006-80439025 None:intergenic 35.0%
ATTACCTGTACACGAAAATC+AGG - Chr5:80441188-80441207 None:intergenic 35.0%
CCCACAAACATGAAAATTGA+AGG + Chr5:80442525-80442544 MsG0580028432.01.T01:intron 35.0%
CTTGAGGAGTTTACGAAAAT+AGG - Chr5:80441415-80441434 None:intergenic 35.0%
GAACAATTGCATGGATGAAA+AGG - Chr5:80440646-80440665 None:intergenic 35.0%
GAGATTGTTTGAATGCCATT+AGG + Chr5:80438988-80439007 MsG0580028432.01.T01:CDS 35.0%
GCCAATTCTGGATAAGTTAA+TGG - Chr5:80442848-80442867 None:intergenic 35.0%
GCTTATAAAGTTCACCTTTG+CGG - Chr5:80442988-80443007 None:intergenic 35.0%
GTAGTGTACTTATACAAGGA+TGG - Chr5:80440064-80440083 None:intergenic 35.0%
TCAAAGCCAAAAGATACAAG+AGG + Chr5:80439310-80439329 MsG0580028432.01.T01:CDS 35.0%
TCAAGATATGAATGCTCCAT+TGG + Chr5:80438456-80438475 MsG0580028432.01.T01:CDS 35.0%
TCCGTGCTTCATAGATAATA+AGG - Chr5:80437879-80437898 None:intergenic 35.0%
TCTGATTTCAACAAAACCAC+CGG + Chr5:80439274-80439293 MsG0580028432.01.T01:CDS 35.0%
TGACAATTGAGAGAAGAGAA+GGG + Chr5:80440359-80440378 MsG0580028432.01.T01:intron 35.0%
TGATGGAACATGATCAAGTT+AGG + Chr5:80439771-80439790 MsG0580028432.01.T01:CDS 35.0%
TGCTTATAAATAGGACCAGA+GGG - Chr5:80438228-80438247 None:intergenic 35.0%
TTAACTAAACATACACCCTC+CGG - Chr5:80441943-80441962 None:intergenic 35.0%
TTGACAATTGAGAGAAGAGA+AGG + Chr5:80440358-80440377 MsG0580028432.01.T01:intron 35.0%
TTGCTTATAAATAGGACCAG+AGG - Chr5:80438229-80438248 None:intergenic 35.0%
! CCCTTCAATTTTCATGTTTG+TGG - Chr5:80442529-80442548 None:intergenic 35.0%
! CTTCTTCCTCTTGTATCTTT+TGG - Chr5:80439319-80439338 None:intergenic 35.0%
! GTTATTGAACGTGACTTTTC+TGG + Chr5:80442884-80442903 MsG0580028432.01.T01:CDS 35.0%
! TATCTCTTTGGTGACCTAAA+TGG + Chr5:80437816-80437835 MsG0580028432.01.T01:CDS 35.0%
! TCCAGACTTTTAAATAGGTC+AGG + Chr5:80442282-80442301 MsG0580028432.01.T01:intron 35.0%
!! AGGCTTTTAAGTAGGCTTTA+AGG + Chr5:80442127-80442146 MsG0580028432.01.T01:intron 35.0%
!! GAGTAATTGAGTTGGATTTG+TGG + Chr5:80438584-80438603 MsG0580028432.01.T01:CDS 35.0%
!!! ATCTTTTGGCTTTGACTTTC+AGG - Chr5:80439305-80439324 None:intergenic 35.0%
ACTTCACAATTATACAGGGG+TGG - Chr5:80442410-80442429 None:intergenic 40.0%
ATACGAACACATACACGACA+TGG + Chr5:80437898-80437917 MsG0580028432.01.T01:intron 40.0%
ATACGGACACCAAAGTAACT+AGG + Chr5:80442774-80442793 MsG0580028432.01.T01:CDS 40.0%
ATGTGTAATAGGGCCAATTC+TGG - Chr5:80442860-80442879 None:intergenic 40.0%
CAAAAGGCAGTGTAGAACAT+TGG + Chr5:80439747-80439766 MsG0580028432.01.T01:CDS 40.0%
CAAGAAAAACGGCCTATGAT+AGG + Chr5:80442311-80442330 MsG0580028432.01.T01:intron 40.0%
CTCATGGGAATGATATTGTC+AGG + Chr5:80439837-80439856 MsG0580028432.01.T01:CDS 40.0%
CTCTTATAAATAGGACCGGA+GGG + Chr5:80438325-80438344 MsG0580028432.01.T01:intron 40.0%
CTTCACAATTATACAGGGGT+GGG - Chr5:80442409-80442428 None:intergenic 40.0%
GAAGAAATCGCCAAAACTCA+TGG + Chr5:80439821-80439840 MsG0580028432.01.T01:CDS 40.0%
GAAGGAATGTTCAAAGCCAA+TGG + Chr5:80440877-80440896 MsG0580028432.01.T01:CDS 40.0%
GCCTGTTTAGCCTATTTAGT+AGG + Chr5:80442198-80442217 MsG0580028432.01.T01:intron 40.0%
GCCTTCTTTCGTTATCTCTT+TGG + Chr5:80437804-80437823 MsG0580028432.01.T01:CDS 40.0%
GGCTCATGTTTATCAAAGTC+TGG + Chr5:80442374-80442393 MsG0580028432.01.T01:intron 40.0%
GTACAATTCATCCATGGTCA+TGG - Chr5:80437664-80437683 None:intergenic 40.0%
GTTCGTTTATGTAACCGCAA+AGG + Chr5:80442971-80442990 MsG0580028432.01.T01:CDS 40.0%
GTTGAAGAGGTGGAGTTATA+TGG - Chr5:80439064-80439083 None:intergenic 40.0%
TATTAATAGGCCGGCCTATT+AGG - Chr5:80442003-80442022 None:intergenic 40.0%
TCAGGTCAGACCAAGAAAAA+CGG + Chr5:80442300-80442319 MsG0580028432.01.T01:intron 40.0%
TCTCTTATAAATAGGACCGG+AGG + Chr5:80438324-80438343 MsG0580028432.01.T01:intron 40.0%
TGAATTGGGTGATGAAAGTG+AGG + Chr5:80439670-80439689 MsG0580028432.01.T01:CDS 40.0%
TGCATGGATGAAAAGGTCTT+AGG - Chr5:80440639-80440658 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+AGG - Chr5:80441944-80441925 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+GGG + Chr5:80441925-80441944 MsG0580028432.01.T01:intron 40.0%
TTAGCTCCTCATTCCAAACT+GGG - Chr5:80442820-80442839 None:intergenic 40.0%
TTCACGTATACATGGGTGAA+GGG + Chr5:80441117-80441136 MsG0580028432.01.T01:intron 40.0%
TTCCTTGGTCCTAGTTACTT+TGG - Chr5:80442786-80442805 None:intergenic 40.0%
TTCTTTGGTCGGTATACTCT+AGG - Chr5:80440961-80440980 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + Chr5:80441924-80441943 MsG0580028432.01.T01:intron 40.0%
TTGCTTGAGGACAAAGATGA+TGG + Chr5:80439344-80439363 MsG0580028432.01.T01:CDS 40.0%
! ATTTTCCCCTTCAACGATTC+TGG - Chr5:80439254-80439273 None:intergenic 40.0%
! CAATGTTCTACACTGCCTTT+TGG - Chr5:80439749-80439768 None:intergenic 40.0%
! CAGTGTAGAACATTGGTTGA+TGG + Chr5:80439754-80439773 MsG0580028432.01.T01:CDS 40.0%
! CATGCTTTAGATTCACCCAA+AGG + Chr5:80440207-80440226 MsG0580028432.01.T01:intron 40.0%
! CCTGAAGAGTTTTCTTTGGT+CGG - Chr5:80440972-80440991 None:intergenic 40.0%
! CTTTGGGTGAATCTAAAGCA+TGG - Chr5:80440209-80440228 None:intergenic 40.0%
! GCATGTTAACTAGTGTCACT+AGG + Chr5:80440753-80440772 MsG0580028432.01.T01:intron 40.0%
! GCCAGTCCAGACTTTTAAAT+AGG + Chr5:80442277-80442296 MsG0580028432.01.T01:intron 40.0%
! GCTTATGGGCTTGTTTGTTA+AGG + Chr5:80439410-80439429 MsG0580028432.01.T01:intron 40.0%
! GGTGAATCTAAAGCATGGAA+TGG - Chr5:80440204-80440223 None:intergenic 40.0%
! TCTGGACAACATGATTTTGC+TGG + Chr5:80442902-80442921 MsG0580028432.01.T01:CDS 40.0%
! TGGATCTAGAGTCAATGATG+AGG + Chr5:80439364-80439383 MsG0580028432.01.T01:CDS 40.0%
! TTTAGCTCCTCATTCCAAAC+TGG - Chr5:80442821-80442840 None:intergenic 40.0%
!! GATTTTCAAGGAGAAAAGGG+TGG + Chr5:80437696-80437715 MsG0580028432.01.T01:CDS 40.0%
!! TATATGTGTTGGTGTCGTGT+CGG - Chr5:80438738-80438757 None:intergenic 40.0%
!!! CTATCATAGGCCGTTTTTCT+TGG - Chr5:80442313-80442332 None:intergenic 40.0%
AAACGGCCTATGATAGGTCT+AGG + Chr5:80442317-80442336 MsG0580028432.01.T01:intron 45.0%
AACATACCCACATCCACCAT+TGG - Chr5:80440896-80440915 None:intergenic 45.0%
AACCTATGAAGCACGGATAC+CGG - Chr5:80438828-80438847 None:intergenic 45.0%
ACAATTATACAGGGGTGGGA+AGG - Chr5:80442405-80442424 None:intergenic 45.0%
ACCTGTACACGAAAATCAGG+CGG - Chr5:80441185-80441204 None:intergenic 45.0%
ATACATGCTGGGAAGCCAAA+AGG + Chr5:80439731-80439750 MsG0580028432.01.T01:CDS 45.0%
ATACGACACGTGTCTAACAC+GGG - Chr5:80438706-80438725 None:intergenic 45.0%
ATATCCAAAGGGTTCACGTG+TGG + Chr5:80440244-80440263 MsG0580028432.01.T01:CDS 45.0%
ATGCCTGAAAGTAGGCTTTC+AGG + Chr5:80442255-80442274 MsG0580028432.01.T01:intron 45.0%
ATGGATGCATGGAGCTCAAA+TGG + Chr5:80440295-80440314 MsG0580028432.01.T01:CDS 45.0%
ATGTGGAAGTTCGTCATGGA+GGG + Chr5:80438626-80438645 MsG0580028432.01.T01:CDS 45.0%
ATTGGGTGATGAAAGTGAGG+AGG + Chr5:80439673-80439692 MsG0580028432.01.T01:CDS 45.0%
CACCAAAGTAACTAGGACCA+AGG + Chr5:80442781-80442800 MsG0580028432.01.T01:CDS 45.0%
CCATGCATCCATCCATTCAT+AGG - Chr5:80440287-80440306 None:intergenic 45.0%
CCGACCAAAGAAAACTCTTC+AGG + Chr5:80440969-80440988 MsG0580028432.01.T01:CDS 45.0%
CCTATGAATGGATGGATGCA+TGG + Chr5:80440284-80440303 MsG0580028432.01.T01:CDS 45.0%
CCTGTATCAGAGCTAAGAGA+AGG + Chr5:80442938-80442957 MsG0580028432.01.T01:CDS 45.0%
CCTTCAACGATTCTGGTGAA+GGG - Chr5:80439247-80439266 None:intergenic 45.0%
CCTTCACCAGAATCGTTGAA+GGG + Chr5:80439245-80439264 MsG0580028432.01.T01:CDS 45.0%
CGTGTCAATATTGTGCAGGT+TGG + Chr5:80442731-80442750 MsG0580028432.01.T01:intron 45.0%
CTCTTCAGGTAAAGGGAATG+TGG + Chr5:80440983-80441002 MsG0580028432.01.T01:intron 45.0%
CTTCACCAGAATCGTTGAAG+GGG + Chr5:80439246-80439265 MsG0580028432.01.T01:CDS 45.0%
GAAGGGTGGCAATCTGAATT+TGG + Chr5:80441134-80441153 MsG0580028432.01.T01:intron 45.0%
GATACGACACGTGTCTAACA+CGG - Chr5:80438707-80438726 None:intergenic 45.0%
GATGATGTGGAAGTTCGTCA+TGG + Chr5:80438622-80438641 MsG0580028432.01.T01:CDS 45.0%
GCCTATCCACTAAACATGCT+AGG - Chr5:80441758-80441777 None:intergenic 45.0%
GGAATGTTCAAAGCCAATGG+TGG + Chr5:80440880-80440899 MsG0580028432.01.T01:CDS 45.0%
GTCTGTTAAGCCTAATAGGC+CGG + Chr5:80441990-80442009 MsG0580028432.01.T01:intron 45.0%
GTTCACGTATACATGGGTGA+AGG + Chr5:80441116-80441135 MsG0580028432.01.T01:intron 45.0%
TAGGACCAAGGAAGATGAGT+GGG + Chr5:80442793-80442812 MsG0580028432.01.T01:CDS 45.0%
! CATGTTTAGTGGATAGGCCT+AGG + Chr5:80441760-80441779 MsG0580028432.01.T01:intron 45.0%
! CCATGGTGTTCCAGTTGATA+CGG + Chr5:80442757-80442776 MsG0580028432.01.T01:CDS 45.0%
! CTTTGACTTTCAGGAGACTC+CGG - Chr5:80439296-80439315 None:intergenic 45.0%
! GCCTAGCATGTTTAGTGGAT+AGG + Chr5:80441754-80441773 MsG0580028432.01.T01:intron 45.0%
! GGAAGAAGTTGAGTTGCTTG+AGG + Chr5:80439331-80439350 MsG0580028432.01.T01:CDS 45.0%
!! ACTTTGGTGTCCGTATCAAC+TGG - Chr5:80442770-80442789 None:intergenic 45.0%
!! ATTGTGCAGGTTGGTATCCA+TGG + Chr5:80442740-80442759 MsG0580028432.01.T01:intron 45.0%
!! CCTTCTCTTAGCTCTGATAC+AGG - Chr5:80442941-80442960 None:intergenic 45.0%
!! TCAAAGCCAATGGTGGATGT+GGG + Chr5:80440887-80440906 MsG0580028432.01.T01:CDS 45.0%
!! TTCAAAGCCAATGGTGGATG+TGG + Chr5:80440886-80440905 MsG0580028432.01.T01:CDS 45.0%
!! AAAAAAAAAAAAAATAAAAC+AGG + Chr5:80441094-80441113 MsG0580028432.01.T01:intron 5.0%
!! ATTTATTTCAAATATATTTA+CGG - Chr5:80441647-80441666 None:intergenic 5.0%
!!! AAAAACATTTTTTAATAAAT+AGG - Chr5:80442026-80442045 None:intergenic 5.0%
AAATGGCCCCATAGGTGATC+AGG + Chr5:80437833-80437852 MsG0580028432.01.T01:CDS 50.0%
AAGATGAGTGGGTCCCAGTT+TGG + Chr5:80442804-80442823 MsG0580028432.01.T01:CDS 50.0%
ACCTGGCCTAGCATGTTTAG+TGG + Chr5:80441749-80441768 MsG0580028432.01.T01:intron 50.0%
ACGTATACATGGGTGAAGGG+TGG + Chr5:80441120-80441139 MsG0580028432.01.T01:intron 50.0%
ATTAGGGTTGGGAATAGGCC+AGG + Chr5:80441681-80441700 MsG0580028432.01.T01:intron 50.0%
CCCTTCAACGATTCTGGTGA+AGG - Chr5:80439248-80439267 None:intergenic 50.0%
CCCTTCACCAGAATCGTTGA+AGG + Chr5:80439244-80439263 MsG0580028432.01.T01:CDS 50.0%
CCGTATCAACTGGAACACCA+TGG - Chr5:80442760-80442779 None:intergenic 50.0%
CTAGGACCAAGGAAGATGAG+TGG + Chr5:80442792-80442811 MsG0580028432.01.T01:CDS 50.0%
GAATCCACACGTGAACCCTT+TGG - Chr5:80440251-80440270 None:intergenic 50.0%
GATCACCTATGGGGCCATTT+AGG - Chr5:80437833-80437852 None:intergenic 50.0%
GATGTGGAAGTTCGTCATGG+AGG + Chr5:80438625-80438644 MsG0580028432.01.T01:CDS 50.0%
GGGCACAACTCCTACTTAAC+TGG + Chr5:80438499-80438518 MsG0580028432.01.T01:CDS 50.0%
GTCTGGCCTAGACCTATCAT+AGG - Chr5:80442326-80442345 None:intergenic 50.0%
TACGACACGTGTCTAACACG+GGG - Chr5:80438705-80438724 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - Chr5:80438049-80438068 None:intergenic 50.0%
TCCACTAAACATGCTAGGCC+AGG - Chr5:80441753-80441772 None:intergenic 50.0%
TGGCCTGAAAGCCTACTTTC+AGG - Chr5:80442261-80442280 None:intergenic 50.0%
TTGGCGACTTTGCGTTGAAG+AGG - Chr5:80439077-80439096 None:intergenic 50.0%
! TATAGGTGACGGTGTCGAGT+CGG + Chr5:80437977-80437996 MsG0580028432.01.T01:intron 50.0%
! TCCGCCTGATTTTCGTGTAC+AGG + Chr5:80441181-80441200 MsG0580028432.01.T01:intron 50.0%
AGGTCAAGCCAGGCCAAAAC+AGG - Chr5:80441733-80441752 None:intergenic 55.0%
CACGGATACCGGACACGAAA+CGG - Chr5:80438817-80438836 None:intergenic 55.0%
GACACACCACACCTAATCCG+AGG + Chr5:80438029-80438048 MsG0580028432.01.T01:intron 55.0%
GAGGAGGAGGATGAGACTCT+TGG + Chr5:80439689-80439708 MsG0580028432.01.T01:CDS 55.0%
GATAGGTCTAGGCCAGACTC+AGG + Chr5:80442328-80442347 MsG0580028432.01.T01:intron 55.0%
GCGACTTTGCGTTGAAGAGG+TGG - Chr5:80439074-80439093 None:intergenic 55.0%
GGATTAGGTGTGGTGTGTCC+TGG - Chr5:80438028-80438047 None:intergenic 55.0%
GGGTGATGAAAGTGAGGAGG+AGG + Chr5:80439676-80439695 MsG0580028432.01.T01:CDS 55.0%
GGTGACCTAAATGGCCCCAT+AGG + Chr5:80437825-80437844 MsG0580028432.01.T01:CDS 55.0%
GTCAGTGTCCGTTTCGTGTC+CGG + Chr5:80438806-80438825 MsG0580028432.01.T01:intron 55.0%
GTCCGGTATCCGTGCTTCAT+AGG + Chr5:80438823-80438842 MsG0580028432.01.T01:intron 55.0%
TATACAGGGGTGGGAAGGTC+AGG - Chr5:80442400-80442419 None:intergenic 55.0%
TGACTTTCAGGAGACTCCGG+TGG - Chr5:80439293-80439312 None:intergenic 55.0%
TGGGACCCACTCATCTTCCT+TGG - Chr5:80442801-80442820 None:intergenic 55.0%
! GACACTCCTCGGATTAGGTG+TGG - Chr5:80438038-80438057 None:intergenic 55.0%
! GTGGGTCCCAGTTTGGAATG+AGG + Chr5:80442811-80442830 MsG0580028432.01.T01:CDS 55.0%
!! ATGTGTTGGTGTCGTGTCGG+CGG - Chr5:80438735-80438754 None:intergenic 55.0%
!!! TGTTTTGGCCTGGCTTGACC+TGG + Chr5:80441732-80441751 MsG0580028432.01.T01:intron 55.0%
AAGCCAGGCCAAAACAGGCC+AGG - Chr5:80441728-80441747 None:intergenic 60.0%
AATAGGCCAGGTCGGCCTAC+AGG + Chr5:80441693-80441712 MsG0580028432.01.T01:intron 60.0%
ATAGGCCAGGTCGGCCTACA+GGG + Chr5:80441694-80441713 MsG0580028432.01.T01:intron 60.0%
ATGCTAGGCCAGGTCAAGCC+AGG - Chr5:80441743-80441762 None:intergenic 60.0%
CACGACACATGTCCGACACC+AGG + Chr5:80438007-80438026 MsG0580028432.01.T01:intron 60.0%
CGGACACTGACACGTCGACA+CGG - Chr5:80438797-80438816 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG - Chr5:80438043-80438062 None:intergenic 60.0%
GGGTTGGGAATAGGCCAGGT+CGG + Chr5:80441685-80441704 MsG0580028432.01.T01:intron 60.0%
GGTGTGGTGTGTCCTGGTGT+CGG - Chr5:80438022-80438041 None:intergenic 60.0%
! TGACGGTGTCGAGTCGGTGT+CGG + Chr5:80437983-80438002 MsG0580028432.01.T01:intron 60.0%
GCCAAAACAGGCCAGGCCGT+AGG - Chr5:80441721-80441740 None:intergenic 65.0%
TAGGCCAGGTCGGCCTACAG+GGG + Chr5:80441695-80441714 MsG0580028432.01.T01:intron 65.0%
! GCCTACGGCCTGGCCTGTTT+TGG + Chr5:80441717-80441736 MsG0580028432.01.T01:intron 65.0%
!! TGGTGTCGTGTCGGCGGTGT+CGG - Chr5:80438729-80438748 None:intergenic 65.0%
GGTCGGCCTACAGGGGCCTA+CGG + Chr5:80441702-80441721 MsG0580028432.01.T01:intron 70.0%
TAGGCCCCTGTAGGCCGACC+TGG - Chr5:80441702-80441721 None:intergenic 70.0%
!!! CGGCCTGGCCTGTTTTGGCC+TGG + Chr5:80441722-80441741 MsG0580028432.01.T01:intron 70.0%
GCCAGGCCGTAGGCCCCTGT+AGG - Chr5:80441711-80441730 None:intergenic 75.0%
GCCTACAGGGGCCTACGGCC+TGG + Chr5:80441707-80441726 MsG0580028432.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 80437588 80443048 80437588 ID=MsG0580028432.01;Name=MsG0580028432.01
Chr5 mRNA 80437588 80443048 80437588 ID=MsG0580028432.01.T01;Parent=MsG0580028432.01;Name=MsG0580028432.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|8|0|518
Chr5 exon 80437588 80437854 80437588 ID=MsG0580028432.01.T01:exon:23709;Parent=MsG0580028432.01.T01
Chr5 exon 80438451 80438647 80438451 ID=MsG0580028432.01.T01:exon:23710;Parent=MsG0580028432.01.T01
Chr5 exon 80438962 80439097 80438962 ID=MsG0580028432.01.T01:exon:23711;Parent=MsG0580028432.01.T01
Chr5 exon 80439179 80439385 80439179 ID=MsG0580028432.01.T01:exon:23712;Parent=MsG0580028432.01.T01
Chr5 exon 80439668 80439858 80439668 ID=MsG0580028432.01.T01:exon:23713;Parent=MsG0580028432.01.T01
Chr5 exon 80440217 80440334 80440217 ID=MsG0580028432.01.T01:exon:23714;Parent=MsG0580028432.01.T01
Chr5 exon 80440850 80440990 80440850 ID=MsG0580028432.01.T01:exon:23715;Parent=MsG0580028432.01.T01
Chr5 exon 80442749 80443048 80442749 ID=MsG0580028432.01.T01:exon:23716;Parent=MsG0580028432.01.T01
Chr5 CDS 80437588 80437854 80437588 ID=MsG0580028432.01.T01:cds;Parent=MsG0580028432.01.T01
Chr5 CDS 80438451 80438647 80438451 ID=MsG0580028432.01.T01:cds;Parent=MsG0580028432.01.T01
Chr5 CDS 80438962 80439097 80438962 ID=MsG0580028432.01.T01:cds;Parent=MsG0580028432.01.T01
Chr5 CDS 80439179 80439385 80439179 ID=MsG0580028432.01.T01:cds;Parent=MsG0580028432.01.T01
Chr5 CDS 80439668 80439858 80439668 ID=MsG0580028432.01.T01:cds;Parent=MsG0580028432.01.T01
Chr5 CDS 80440217 80440334 80440217 ID=MsG0580028432.01.T01:cds;Parent=MsG0580028432.01.T01
Chr5 CDS 80440850 80440990 80440850 ID=MsG0580028432.01.T01:cds;Parent=MsG0580028432.01.T01
Chr5 CDS 80442749 80443048 80442749 ID=MsG0580028432.01.T01:cds;Parent=MsG0580028432.01.T01
Gene Sequence

>MsG0580028432.01.T01

ATGTTTAAGCTCAAGGTGGCTGAACCACCAGAAGAAATCAACAATATTTTTAATAGGTATGCAAAAAATGGTACCATGACCATGGATGAATTGTACTACTTTTTAGTTGATTTTCAAGGAGAAAAGGGTGGTGAAGCTACCCAAAAACATGCTCAAGATGTTTTCCACAGTTTAAAACATCTCAATATATTTCAAAGAAGAGGTCTTCATTTTGATGCCTTCTTTCGTTATCTCTTTGGTGACCTAAATGGCCCCATAGGTGATCAGGTGCATCAAGATATGAATGCTCCATTGGCTCATTATTTTTTGTACACAGGGCACAACTCCTACTTAACTGGAAATCAATTGAGCAGTGAAAGCAGTACTATCCCAATAATAAAAGCTCTGAAAAAAGGAGTTAGAGTAATTGAGTTGGATTTGTGGCCAAATTCTAGAGAAGATGATGTGGAAGTTCGTCATGGAGGGACTCTGACTTCTTCAGTGAAACTTAGAGATTGTTTGAATGCCATTAGGGACAATGCATTTGATGCCTCAAAGTATCCTGTTATAATAACTTTTGAAGACCATATAACTCCACCTCTTCAACGCAAAGTCGCCAAAATGGTGGATGATATATTTAGAGGTATGTTGTTTCGTCCAAATTATTCACATCAAATGAAGAAATTCCCTTCACCAGAATCGTTGAAGGGGAAAATTCTGATTTCAACAAAACCACCGGAGTCTCCTGAAAGTCAAAGCCAAAAGATACAAGAGGAAGAAGTTGAGTTGCTTGAGGACAAAGATGATGGATCTAGAGTCAATGATGAGGATGAATTGGGTGATGAAAGTGAGGAGGAGGATGAGACTCTTGGATATAGAAATTTGATTTCTATACATGCTGGGAAGCCAAAAGGCAGTGTAGAACATTGGTTGATGGAACATGATCAAGTTAGGCGTCTTAGCTTGAGCGAACAAGTTCTTGAAGAAATCGCCAAAACTCATGGGAATGATATTGTCAGATTCACCCAAAGGAATTTGCTTAGAATATATCCAAAGGGTTCACGTGTGGATTCCTCCAATTATGATCCTATGAATGGATGGATGCATGGAGCTCAAATGGTAGCATTTAATATGCAGGGACATGGGCATTATCTTCAATTTATGGAAGGAATGTTCAAAGCCAATGGTGGATGTGGGTATGTTAAGAAACCTGACATCTTATTGAACAATAATAAGATGTATGATCCTAGAGTATACCGACCAAAGAAAACTCTTCAGGTTGGTATCCATGGTGTTCCAGTTGATACGGACACCAAAGTAACTAGGACCAAGGAAGATGAGTGGGTCCCAGTTTGGAATGAGGAGCTAAACTTTCCATTAACTTATCCAGAATTGGCCCTATTACACATTAAAGTTATTGAACGTGACTTTTCTGGACAACATGATTTTGCTGGACAAACATGTTTACCTGTATCAGAGCTAAGAGAAGGCATTCGTTGTGTTCGTTTATGTAACCGCAAAGGTGAACTTTATAAGCATGTTAGGCTTTTAATCCAATTTCGATTTTCTAATCACTAG
Protein sequence

>MsG0580028432.01.T01

MFKLKVAEPPEEINNIFNRYAKNGTMTMDELYYFLVDFQGEKGGEATQKHAQDVFHSLKHLNIFQRRGLHFDAFFRYLFGDLNGPIGDQVHQDMNAPLAHYFLYTGHNSYLTGNQLSSESSTIPIIKALKKGVRVIELDLWPNSREDDVEVRHGGTLTSSVKLRDCLNAIRDNAFDASKYPVIITFEDHITPPLQRKVAKMVDDIFRGMLFRPNYSHQMKKFPSPESLKGKILISTKPPESPESQSQKIQEEEVELLEDKDDGSRVNDEDELGDESEEEDETLGYRNLISIHAGKPKGSVEHWLMEHDQVRRLSLSEQVLEEIAKTHGNDIVRFTQRNLLRIYPKGSRVDSSNYDPMNGWMHGAQMVAFNMQGHGHYLQFMEGMFKANGGCGYVKKPDILLNNNKMYDPRVYRPKKTLQVGIHGVPVDTDTKVTRTKEDEWVPVWNEELNFPLTYPELALLHIKVIERDFSGQHDFAGQTCLPVSELREGIRCVRLCNRKGELYKHVRLLIQFRFSNH*