Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044041.01.T01 | XP_013445262.1 | 83.445 | 447 | 35 | 4 | 1 | 444 | 1 | 411 | 0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044041.01.T01 | D9UC01 | 37.113 | 97 | 61 | 0 | 24 | 120 | 16 | 112 | 2.63E-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044041.01.T01 | A0A072TR16 | 83.445 | 447 | 35 | 4 | 1 | 444 | 1 | 411 | 0.0 | 689 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000024.01 | MsG0880044041.01 | 0.830115 | 3.522496e-55 | 3.676739e-52 |
| MsG0180000983.01 | MsG0880044041.01 | 0.886097 | 4.597379e-72 | 3.238145e-68 |
| MsG0180002271.01 | MsG0880044041.01 | 0.802594 | 5.209844e-49 | 2.562233e-46 |
| MsG0180002421.01 | MsG0880044041.01 | 0.804756 | 1.854359e-49 | 9.640297e-47 |
| MsG0880044041.01 | MsG0880047226.01 | 0.815946 | 7.123989e-52 | 4.980291e-49 |
| MsG0880044041.01 | MsG0880047431.01 | 0.816057 | 6.727312e-52 | 4.717693e-49 |
| MsG0880044041.01 | MsG0880047666.01 | 0.805119 | 1.556977e-49 | 8.170127e-47 |
| MsG0180003281.01 | MsG0880044041.01 | 0.807662 | 4.530393e-50 | 2.538013e-47 |
| MsG0180003858.01 | MsG0880044041.01 | 0.818957 | 1.494337e-52 | 1.134840e-49 |
| MsG0180004099.01 | MsG0880044041.01 | 0.848363 | 6.428417e-60 | 1.176864e-56 |
| MsG0180004754.01 | MsG0880044041.01 | 0.820704 | 5.958509e-53 | 4.749489e-50 |
| MsG0180004970.01 | MsG0880044041.01 | 0.838940 | 2.133576e-57 | 2.901658e-54 |
| MsG0280006311.01 | MsG0880044041.01 | 0.803635 | 3.172603e-49 | 1.602398e-46 |
| MsG0880041896.01 | MsG0880044041.01 | 0.864527 | 1.140867e-64 | 3.592968e-61 |
| MsG0280010779.01 | MsG0880044041.01 | 0.822636 | 2.130901e-53 | 1.793787e-50 |
| MsG0280011282.01 | MsG0880044041.01 | 0.827195 | 1.789118e-54 | 1.715089e-51 |
| MsG0380011640.01 | MsG0880044041.01 | 0.862905 | 3.638276e-64 | 1.083077e-60 |
| MsG0380011648.01 | MsG0880044041.01 | 0.812383 | 4.358504e-51 | 2.767168e-48 |
| MsG0380013636.01 | MsG0880044041.01 | 0.830054 | 3.643627e-55 | 3.796331e-52 |
| MsG0680034598.01 | MsG0880044041.01 | 0.812881 | 3.390687e-51 | 2.181149e-48 |
| MsG0680034842.01 | MsG0880044041.01 | 0.810827 | 9.496535e-51 | 5.784324e-48 |
| MsG0480018538.01 | MsG0880044041.01 | 0.821291 | 4.364596e-53 | 3.536327e-50 |
| MsG0480022331.01 | MsG0880044041.01 | 0.844551 | 7.050629e-59 | 1.142359e-55 |
| MsG0480023130.01 | MsG0880044041.01 | 0.846893 | 1.631359e-59 | 2.849186e-56 |
| MsG0580024506.01 | MsG0880044041.01 | 0.811793 | 5.861809e-51 | 3.662621e-48 |
| MsG0580025120.01 | MsG0880044041.01 | 0.804911 | 1.720861e-49 | 8.982664e-47 |
| MsG0580025766.01 | MsG0880044041.01 | 0.832083 | 1.157369e-55 | 1.280082e-52 |
| MsG0380015185.01 | MsG0880044041.01 | 0.818940 | 1.507703e-52 | 1.144492e-49 |
| MsG0380015190.01 | MsG0880044041.01 | 0.873726 | 1.175864e-67 | 5.156588e-64 |
| MsG0380015548.01 | MsG0880044041.01 | 0.828010 | 1.139812e-54 | 1.118983e-51 |
| MsG0380015736.01 | MsG0880044041.01 | 0.802324 | 5.921160e-49 | 2.892242e-46 |
| MsG0380015805.01 | MsG0880044041.01 | 0.848616 | 5.472691e-60 | 1.010049e-56 |
| MsG0380016703.01 | MsG0880044041.01 | 0.815538 | 8.781897e-52 | 6.071441e-49 |
| MsG0380016994.01 | MsG0880044041.01 | 0.813582 | 2.379040e-51 | 1.559712e-48 |
| MsG0380017159.01 | MsG0880044041.01 | 0.812559 | 3.988120e-51 | 2.543861e-48 |
| MsG0380017422.01 | MsG0880044041.01 | 0.808833 | 2.550716e-50 | 1.473528e-47 |
| MsG0480018346.01 | MsG0880044041.01 | 0.841603 | 4.299061e-58 | 6.349821e-55 |
| MsG0580026307.01 | MsG0880044041.01 | 0.833753 | 4.448601e-56 | 5.171728e-53 |
| MsG0580028432.01 | MsG0880044041.01 | 0.852113 | 5.712687e-61 | 1.181415e-57 |
| MsG0580029298.01 | MsG0880044041.01 | 0.845654 | 3.549154e-59 | 5.956576e-56 |
| MsG0580029496.01 | MsG0880044041.01 | 0.876129 | 1.784404e-68 | 8.552203e-65 |
| MsG0580029640.01 | MsG0880044041.01 | 0.803717 | 3.051488e-49 | 1.544424e-46 |
| MsG0580029712.01 | MsG0880044041.01 | 0.805077 | 1.588786e-49 | 8.327901e-47 |
| MsG0280006591.01 | MsG0880044041.01 | 0.834733 | 2.526732e-56 | 3.024711e-53 |
| MsG0280008280.01 | MsG0880044041.01 | 0.811158 | 8.052530e-51 | 4.947743e-48 |
| MsG0280008909.01 | MsG0880044041.01 | 0.802910 | 4.482335e-49 | 2.222306e-46 |
| MsG0280009404.01 | MsG0880044041.01 | 0.805893 | 1.071197e-49 | 5.733923e-47 |
| MsG0280009493.01 | MsG0880044041.01 | 0.833243 | 5.965842e-56 | 6.830300e-53 |
| MsG0280009514.01 | MsG0880044041.01 | 0.818328 | 2.075441e-52 | 1.548877e-49 |
| MsG0280009515.01 | MsG0880044041.01 | 0.801052 | 1.080034e-48 | 5.108157e-46 |
| MsG0280010491.01 | MsG0880044041.01 | 0.817867 | 2.638712e-52 | 1.944371e-49 |
| MsG0780036752.01 | MsG0880044041.01 | 0.839762 | 1.305207e-57 | 1.820370e-54 |
| MsG0780037371.01 | MsG0880044041.01 | 0.810063 | 1.388418e-50 | 8.287518e-48 |
| MsG0780038935.01 | MsG0880044041.01 | 0.819466 | 1.144442e-52 | 8.814075e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044041.01.T01 | MTR_8g046245 | 83.445 | 447 | 35 | 4 | 1 | 444 | 1 | 411 | 0.0 | 689 |
| MsG0880044041.01.T01 | MTR_3g007660 | 38.697 | 261 | 105 | 9 | 1 | 234 | 1 | 233 | 1.06e-34 | 134 |
| MsG0880044041.01.T01 | MTR_3g007660 | 32.857 | 210 | 102 | 9 | 269 | 444 | 198 | 402 | 2.84e-11 | 65.5 |
| MsG0880044041.01.T01 | MTR_3g007480 | 26.226 | 469 | 281 | 19 | 24 | 444 | 9 | 460 | 1.12e-14 | 76.3 |
| MsG0880044041.01.T01 | MTR_5g087480 | 34.266 | 143 | 86 | 5 | 15 | 153 | 4 | 142 | 1.08e-13 | 72.0 |
| MsG0880044041.01.T01 | MTR_5g087450 | 35.417 | 96 | 61 | 1 | 22 | 117 | 12 | 106 | 4.28e-13 | 69.3 |
| MsG0880044041.01.T01 | MTR_5g087480 | 35.052 | 97 | 60 | 2 | 15 | 111 | 4 | 97 | 9.09e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044041.01.T01 | AT5G04890 | 37.113 | 97 | 61 | 0 | 24 | 120 | 16 | 112 | 4.11e-17 | 83.2 |
| MsG0880044041.01.T01 | AT2G27140 | 38.889 | 90 | 54 | 1 | 22 | 111 | 12 | 100 | 1.09e-16 | 79.3 |
| MsG0880044041.01.T01 | AT5G20970 | 36.458 | 96 | 60 | 1 | 16 | 111 | 2 | 96 | 1.47e-13 | 70.9 |
Find 63 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGTTTATCTTCC+TGG | 0.169791 | 8:+34693870 | MsG0880044041.01.T01:CDS |
| GAGAGTTCCTTGTTCAAATT+TGG | 0.170610 | 8:-34694276 | None:intergenic |
| GTCTTGTTTCAAATTCTTCT+TGG | 0.195325 | 8:-34694664 | None:intergenic |
| CATTTAGAGCACCAACTTTC+CGG | 0.225720 | 8:+34693772 | MsG0880044041.01.T01:CDS |
| TCCATTCTTTCCTTCTTGAT+TGG | 0.251936 | 8:-34695140 | None:intergenic |
| TCATTGCTAATTGTTTCTTT+AGG | 0.292280 | 8:-34694548 | None:intergenic |
| CCATTCTTTCCTTCTTGATT+GGG | 0.294315 | 8:-34695139 | None:intergenic |
| TCAAAATGGTAAAGAGGATT+TGG | 0.306061 | 8:+34694802 | MsG0880044041.01.T01:CDS |
| TCACGAAAGTTGAGGGTTAC+AGG | 0.325893 | 8:+34694167 | MsG0880044041.01.T01:CDS |
| GTGTCTATGGATGTTGGTTT+TGG | 0.330660 | 8:-34694605 | None:intergenic |
| GTTCTAGTGATTGCTGCATT+TGG | 0.340403 | 8:+34695265 | MsG0880044041.01.T01:CDS |
| CTCCATTTGTTAACTGGAAT+CGG | 0.348473 | 8:-34694197 | None:intergenic |
| TCTAAATCTTTATTATTTGA+AGG | 0.357574 | 8:-34694371 | None:intergenic |
| AACAAATGAAAAGGCTCAAA+AGG | 0.366924 | 8:+34694862 | MsG0880044041.01.T01:CDS |
| TTGGAGCCTATGTGTCATAT+TGG | 0.385338 | 8:+34695284 | MsG0880044041.01.T01:CDS |
| TGATTCTTGCTTGACTCATA+AGG | 0.387472 | 8:-34695028 | None:intergenic |
| GGTTACCAAAGAAAATTTAG+AGG | 0.391549 | 8:+34694922 | MsG0880044041.01.T01:CDS |
| TCAAATGAAGATTGAGTTGC+TGG | 0.398349 | 8:+34694139 | MsG0880044041.01.T01:CDS |
| ATAGATGAAAAGCCTCAAAA+TGG | 0.404493 | 8:+34694788 | MsG0880044041.01.T01:CDS |
| AATTTAGAGGAAAAGATAGT+AGG | 0.419722 | 8:+34694935 | MsG0880044041.01.T01:CDS |
| ACATGAAGAAGGTAAGCTTC+AGG | 0.423364 | 8:-34693858 | None:intergenic |
| TTTCTGGAACAGGATATGTT+TGG | 0.435725 | 8:-34694229 | None:intergenic |
| ACTTGTGATGATTGTGAAGT+TGG | 0.436730 | 8:-34694320 | None:intergenic |
| GTTTCTTTCATCTCTGATAG+AGG | 0.440166 | 8:-34693834 | None:intergenic |
| CAATGACAATAACCCTCAAA+AGG | 0.440997 | 8:+34694565 | MsG0880044041.01.T01:CDS |
| CCCAATCAAGAAGGAAAGAA+TGG | 0.442537 | 8:+34695139 | MsG0880044041.01.T01:CDS |
| TTGGCTCTCTCTATTGATGT+TGG | 0.446110 | 8:-34694686 | None:intergenic |
| TTCTTTCCTTCTTGATTGGG+AGG | 0.447386 | 8:-34695136 | None:intergenic |
| TTGGTTCTCTCTATGGATGT+TGG | 0.448014 | 8:-34694758 | None:intergenic |
| AATAGATGAAAAGCCTCAAA+AGG | 0.448744 | 8:+34694640 | MsG0880044041.01.T01:CDS |
| GACCGATTCCAGTTAACAAA+TGG | 0.451924 | 8:+34694195 | MsG0880044041.01.T01:CDS |
| GCCTCAAAATGGTCAAGTAT+TGG | 0.452760 | 8:+34694727 | MsG0880044041.01.T01:CDS |
| ATAGATGAAAAGCCTCAAAA+TGG | 0.459211 | 8:+34694716 | MsG0880044041.01.T01:CDS |
| TTTGTTCTCTCTGTGGATGT+TGG | 0.459864 | 8:-34694833 | None:intergenic |
| GAATCAAAACTTGAAAGAAA+AGG | 0.462927 | 8:+34695045 | MsG0880044041.01.T01:CDS |
| CTGAAGATGCTGAGAAAGAA+AGG | 0.464414 | 8:+34694966 | MsG0880044041.01.T01:CDS |
| TTGGTTGTGTCTATGGATGT+TGG | 0.475530 | 8:-34694611 | None:intergenic |
| CATTATAGTTTCCCCTCAAG+AGG | 0.507060 | 8:-34695311 | None:intergenic |
| TCAATGCTTTGAGAAGTTTG+AGG | 0.520952 | 8:-34694485 | None:intergenic |
| GAAAGTTGCGACCGGAAAGT+TGG | 0.529825 | 8:-34693783 | None:intergenic |
| CAGGAAGATAAACATGAAGA+AGG | 0.535239 | 8:-34693869 | None:intergenic |
| AATGACAATAACCCTCAAAA+GGG | 0.540210 | 8:+34694566 | MsG0880044041.01.T01:CDS |
| TGCTCCAAATGTTACAGAGA+AGG | 0.544443 | 8:+34695090 | MsG0880044041.01.T01:CDS |
| GAAAGAAAGGAACTCAAAGA+AGG | 0.547668 | 8:+34694979 | MsG0880044041.01.T01:CDS |
| AGTAGCTCCTCAACAAGAAG+TGG | 0.548265 | 8:+34694340 | MsG0880044041.01.T01:CDS |
| ACAAATGAAAAGGCTCAAAA+GGG | 0.550919 | 8:+34694863 | MsG0880044041.01.T01:CDS |
| AAAGCCTCAAAATGGTAAAG+AGG | 0.553368 | 8:+34694796 | MsG0880044041.01.T01:CDS |
| GGACATGTCACGAAAGTTGA+GGG | 0.556517 | 8:+34694160 | MsG0880044041.01.T01:CDS |
| TAAAGATTTAGATGAAGCAA+AGG | 0.558689 | 8:+34694382 | MsG0880044041.01.T01:CDS |
| TTTGTAACAAGAATTGCTGA+AGG | 0.562104 | 8:+34695193 | MsG0880044041.01.T01:CDS |
| AGACATTTAGCTGAAAATGT+AGG | 0.570668 | 8:+34695235 | MsG0880044041.01.T01:CDS |
| GGAAAACCAATATGACACAT+AGG | 0.573601 | 8:-34695290 | None:intergenic |
| CTTGAAGCCAAATTTGAACA+AGG | 0.579441 | 8:+34694269 | MsG0880044041.01.T01:CDS |
| TGGACATGTCACGAAAGTTG+AGG | 0.582103 | 8:+34694159 | MsG0880044041.01.T01:CDS |
| AGAAAGGAACTCAAAGAAGG+AGG | 0.597966 | 8:+34694982 | MsG0880044041.01.T01:CDS |
| ATAGATGAAAAGCCTCAAAA+GGG | 0.605816 | 8:+34694641 | MsG0880044041.01.T01:CDS |
| AGAATTCCTCCCAATCAAGA+AGG | 0.608244 | 8:+34695130 | MsG0880044041.01.T01:CDS |
| GACGAACTGAAAGTTGCGAC+CGG | 0.608677 | 8:-34693791 | None:intergenic |
| GTTTCTTTAGGAATTTGAGA+TGG | 0.609368 | 8:-34694536 | None:intergenic |
| AAAGGCTCAAAAGGGTGAAG+AGG | 0.622355 | 8:+34694871 | MsG0880044041.01.T01:CDS |
| TTGTAACAAGAATTGCTGAA+GGG | 0.622617 | 8:+34695194 | MsG0880044041.01.T01:CDS |
| TCCTGTTCCAGAAAATAGTG+TGG | 0.670105 | 8:+34694238 | MsG0880044041.01.T01:CDS |
| ATTGCTGAAGGGAAATTGAG+TGG | 0.731467 | 8:+34695205 | MsG0880044041.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAATCTTTATTATTTGA+AGG | - | Chr8:34694374-34694393 | None:intergenic | 15.0% |
| !! | AAAAACACAAACAAATGAAA+AGG | + | Chr8:34694853-34694872 | MsG0880044041.01.T01:CDS | 20.0% |
| !! | TATCATATGAATTGTACTTA+CGG | - | Chr8:34693931-34693950 | None:intergenic | 20.0% |
| !!! | TATTTCTGTTTTGATTTTGT+AGG | + | Chr8:34694104-34694123 | MsG0880044041.01.T01:intron | 20.0% |
| !!! | TCAAAACAGAAATATAGTTT+TGG | - | Chr8:34694098-34694117 | None:intergenic | 20.0% |
| ! | AAAGTCAAAATTTGTGTGTA+TGG | + | Chr8:34694055-34694074 | MsG0880044041.01.T01:intron | 25.0% |
| ! | AATTTAGAGGAAAAGATAGT+AGG | + | Chr8:34694935-34694954 | MsG0880044041.01.T01:CDS | 25.0% |
| ! | GAATCAAAACTTGAAAGAAA+AGG | + | Chr8:34695045-34695064 | MsG0880044041.01.T01:CDS | 25.0% |
| ! | TAAAGATTTAGATGAAGCAA+AGG | + | Chr8:34694382-34694401 | MsG0880044041.01.T01:CDS | 25.0% |
| !! | ACCAATTTCTCTATTGTTTT+TGG | - | Chr8:34694905-34694924 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | - | Chr8:34694708-34694727 | None:intergenic | 25.0% |
| !! | CTTTTCCTCTAAATTTTCTT+TGG | - | Chr8:34694930-34694949 | None:intergenic | 25.0% |
| !! | TCATTGCTAATTGTTTCTTT+AGG | - | Chr8:34694551-34694570 | None:intergenic | 25.0% |
| !! | TGATTTTGTAGGTTTTACAA+AGG | + | Chr8:34694115-34694134 | MsG0880044041.01.T01:intron | 25.0% |
| !!! | AATTTTCTCCATTTGTTAAC+TGG | - | Chr8:34694206-34694225 | None:intergenic | 25.0% |
| !!! | CTTTTCATCTATTTGCTTTT+TGG | - | Chr8:34694633-34694652 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTGATTATATAGC+AGG | - | Chr8:34694081-34694100 | None:intergenic | 25.0% |
| AACAAATGAAAAGGCTCAAA+AGG | + | Chr8:34694862-34694881 | MsG0880044041.01.T01:CDS | 30.0% | |
| AATAGATGAAAAGCCTCAAA+AGG | + | Chr8:34694640-34694659 | MsG0880044041.01.T01:CDS | 30.0% | |
| AATGACAATAACCCTCAAAA+GGG | + | Chr8:34694566-34694585 | MsG0880044041.01.T01:CDS | 30.0% | |
| ACAAATGAAAAGGCTCAAAA+GGG | + | Chr8:34694863-34694882 | MsG0880044041.01.T01:CDS | 30.0% | |
| AGACATTTAGCTGAAAATGT+AGG | + | Chr8:34695235-34695254 | MsG0880044041.01.T01:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+GGG | + | Chr8:34694641-34694660 | MsG0880044041.01.T01:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+TGG | + | Chr8:34694641-34694660 | MsG0880044041.01.T01:CDS | 30.0% | |
| GCCAAAAACAATAGAGAAAT+TGG | + | Chr8:34694901-34694920 | MsG0880044041.01.T01:CDS | 30.0% | |
| GGTTACCAAAGAAAATTTAG+AGG | + | Chr8:34694922-34694941 | MsG0880044041.01.T01:CDS | 30.0% | |
| TCAAAATGGTAAAGAGGATT+TGG | + | Chr8:34694802-34694821 | MsG0880044041.01.T01:CDS | 30.0% | |
| TTGTAACAAGAATTGCTGAA+GGG | + | Chr8:34695194-34695213 | MsG0880044041.01.T01:CDS | 30.0% | |
| TTTGTAACAAGAATTGCTGA+AGG | + | Chr8:34695193-34695212 | MsG0880044041.01.T01:CDS | 30.0% | |
| ! | AAATCCTCTTTACCATTTTG+AGG | - | Chr8:34694803-34694822 | None:intergenic | 30.0% |
| ! | GTTTCTTTAGGAATTTGAGA+TGG | - | Chr8:34694539-34694558 | None:intergenic | 30.0% |
| ! | TTTTCCTTCTCTGTAACATT+TGG | - | Chr8:34695097-34695116 | None:intergenic | 30.0% |
| !! | ATGCCTTTAACTTGTTTACA+TGG | + | Chr8:34693896-34693915 | MsG0880044041.01.T01:intron | 30.0% |
| !! | GTCTTGTTTCAAATTCTTCT+TGG | - | Chr8:34694667-34694686 | None:intergenic | 30.0% |
| !! | GTTGATTCTTCCAATTTTTG+TGG | - | Chr8:34694440-34694459 | None:intergenic | 30.0% |
| AAAGCCTCAAAATGGTAAAG+AGG | + | Chr8:34694796-34694815 | MsG0880044041.01.T01:CDS | 35.0% | |
| ACTTGTGATGATTGTGAAGT+TGG | - | Chr8:34694323-34694342 | None:intergenic | 35.0% | |
| CAATGACAATAACCCTCAAA+AGG | + | Chr8:34694565-34694584 | MsG0880044041.01.T01:CDS | 35.0% | |
| CAGGAAGATAAACATGAAGA+AGG | - | Chr8:34693872-34693891 | None:intergenic | 35.0% | |
| CCATTCTTTCCTTCTTGATT+GGG | - | Chr8:34695142-34695161 | None:intergenic | 35.0% | |
| CGACCATGTAAACAAGTTAA+AGG | - | Chr8:34693902-34693921 | None:intergenic | 35.0% | |
| CTTCTTCATGTTTATCTTCC+TGG | + | Chr8:34693870-34693889 | MsG0880044041.01.T01:CDS | 35.0% | |
| CTTGAAGCCAAATTTGAACA+AGG | + | Chr8:34694269-34694288 | MsG0880044041.01.T01:CDS | 35.0% | |
| GAAAGAAAGGAACTCAAAGA+AGG | + | Chr8:34694979-34694998 | MsG0880044041.01.T01:CDS | 35.0% | |
| GAGAGTTCCTTGTTCAAATT+TGG | - | Chr8:34694279-34694298 | None:intergenic | 35.0% | |
| GGAAAACCAATATGACACAT+AGG | - | Chr8:34695293-34695312 | None:intergenic | 35.0% | |
| GTTTCTTTCATCTCTGATAG+AGG | - | Chr8:34693837-34693856 | None:intergenic | 35.0% | |
| TATTCCACCACCACAAAAAT+TGG | + | Chr8:34694427-34694446 | MsG0880044041.01.T01:CDS | 35.0% | |
| TCCATTCTTTCCTTCTTGAT+TGG | - | Chr8:34695143-34695162 | None:intergenic | 35.0% | |
| TGATTCTTGCTTGACTCATA+AGG | - | Chr8:34695031-34695050 | None:intergenic | 35.0% | |
| ! | AATTCTTGTTGACCCTTTTG+AGG | - | Chr8:34694581-34694600 | None:intergenic | 35.0% |
| ! | ACAAGTTAAAGGCATATACC+AGG | - | Chr8:34693891-34693910 | None:intergenic | 35.0% |
| ! | ATTCTTGTTGACCCTTTTGA+GGG | - | Chr8:34694580-34694599 | None:intergenic | 35.0% |
| ! | CTCCATTTGTTAACTGGAAT+CGG | - | Chr8:34694200-34694219 | None:intergenic | 35.0% |
| ! | GATTCTTCCAATTTTTGTGG+TGG | - | Chr8:34694437-34694456 | None:intergenic | 35.0% |
| ! | TCAAATGAAGATTGAGTTGC+TGG | + | Chr8:34694139-34694158 | MsG0880044041.01.T01:CDS | 35.0% |
| ! | TCCAATACTTGACCATTTTG+AGG | - | Chr8:34694731-34694750 | None:intergenic | 35.0% |
| !! | TCAATGCTTTGAGAAGTTTG+AGG | - | Chr8:34694488-34694507 | None:intergenic | 35.0% |
| !! | TTGTGTTTTTGTTCTCTCTG+TGG | - | Chr8:34694843-34694862 | None:intergenic | 35.0% |
| !! | TTTCTGGAACAGGATATGTT+TGG | - | Chr8:34694232-34694251 | None:intergenic | 35.0% |
| !!! | CTTTTTTCCACTTCTTGTTG+AGG | - | Chr8:34694350-34694369 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGGTTGTGTCTA+TGG | - | Chr8:34694621-34694640 | None:intergenic | 35.0% |
| !!! | TTGTGTTTTGGTTCTCTCTA+TGG | - | Chr8:34694768-34694787 | None:intergenic | 35.0% |
| !!! | TTTTTGTGGTGGTGGAATAT+TGG | - | Chr8:34694426-34694445 | None:intergenic | 35.0% |
| ACATGAAGAAGGTAAGCTTC+AGG | - | Chr8:34693861-34693880 | None:intergenic | 40.0% | |
| AGAAAGGAACTCAAAGAAGG+AGG | + | Chr8:34694982-34695001 | MsG0880044041.01.T01:CDS | 40.0% | |
| AGAATTCCTCCCAATCAAGA+AGG | + | Chr8:34695130-34695149 | MsG0880044041.01.T01:CDS | 40.0% | |
| ATTGCTGAAGGGAAATTGAG+TGG | + | Chr8:34695205-34695224 | MsG0880044041.01.T01:CDS | 40.0% | |
| CCCAATCAAGAAGGAAAGAA+TGG | + | Chr8:34695139-34695158 | MsG0880044041.01.T01:CDS | 40.0% | |
| CTGAAGATGCTGAGAAAGAA+AGG | + | Chr8:34694966-34694985 | MsG0880044041.01.T01:CDS | 40.0% | |
| GCCTCAAAATGGTCAAGTAT+TGG | + | Chr8:34694727-34694746 | MsG0880044041.01.T01:CDS | 40.0% | |
| GTTCTAGTGATTGCTGCATT+TGG | + | Chr8:34695265-34695284 | MsG0880044041.01.T01:CDS | 40.0% | |
| TCCTGTTCCAGAAAATAGTG+TGG | + | Chr8:34694238-34694257 | MsG0880044041.01.T01:CDS | 40.0% | |
| TGCTCCAAATGTTACAGAGA+AGG | + | Chr8:34695090-34695109 | MsG0880044041.01.T01:CDS | 40.0% | |
| TTCTTTCCTTCTTGATTGGG+AGG | - | Chr8:34695139-34695158 | None:intergenic | 40.0% | |
| TTGGAGCCTATGTGTCATAT+TGG | + | Chr8:34695284-34695303 | MsG0880044041.01.T01:CDS | 40.0% | |
| TTGGTTGTGTCTATGGATGT+TGG | - | Chr8:34694614-34694633 | None:intergenic | 40.0% | |
| TTTGTTCTCTCTGTGGATGT+TGG | - | Chr8:34694836-34694855 | None:intergenic | 40.0% | |
| ! | AATTCTTCTTGGCCCTTTTG+AGG | - | Chr8:34694656-34694675 | None:intergenic | 40.0% |
| ! | CATTTAGAGCACCAACTTTC+CGG | + | Chr8:34693772-34693791 | MsG0880044041.01.T01:CDS | 40.0% |
| ! | GACCGATTCCAGTTAACAAA+TGG | + | Chr8:34694195-34694214 | MsG0880044041.01.T01:CDS | 40.0% |
| ! | TCTTCCAATTTTTGTGGTGG+TGG | - | Chr8:34694434-34694453 | None:intergenic | 40.0% |
| ! | TTCTCTGCCACACTATTTTC+TGG | - | Chr8:34694248-34694267 | None:intergenic | 40.0% |
| ! | TTGGCTCTCTCTATTGATGT+TGG | - | Chr8:34694689-34694708 | None:intergenic | 40.0% |
| ! | TTGGTTCTCTCTATGGATGT+TGG | - | Chr8:34694761-34694780 | None:intergenic | 40.0% |
| !!! | GTGTCTATGGATGTTGGTTT+TGG | - | Chr8:34694608-34694627 | None:intergenic | 40.0% |
| AAAGGCTCAAAAGGGTGAAG+AGG | + | Chr8:34694871-34694890 | MsG0880044041.01.T01:CDS | 45.0% | |
| AGTAGCTCCTCAACAAGAAG+TGG | + | Chr8:34694340-34694359 | MsG0880044041.01.T01:CDS | 45.0% | |
| GGACATGTCACGAAAGTTGA+GGG | + | Chr8:34694160-34694179 | MsG0880044041.01.T01:CDS | 45.0% | |
| TCACGAAAGTTGAGGGTTAC+AGG | + | Chr8:34694167-34694186 | MsG0880044041.01.T01:CDS | 45.0% | |
| TGGACATGTCACGAAAGTTG+AGG | + | Chr8:34694159-34694178 | MsG0880044041.01.T01:CDS | 45.0% | |
| ! | ACAATGACACAGTTGATGCG+AGG | - | Chr8:34694002-34694021 | None:intergenic | 45.0% |
| !!! | GCCACACTATTTTCTGGAAC+AGG | - | Chr8:34694242-34694261 | None:intergenic | 45.0% |
| GAAAGTTGCGACCGGAAAGT+TGG | - | Chr8:34693786-34693805 | None:intergenic | 50.0% | |
| GACGAACTGAAAGTTGCGAC+CGG | - | Chr8:34693794-34693813 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 34693750 | 34695318 | 34693750 | ID=MsG0880044041.01;Name=MsG0880044041.01 |
| Chr8 | mRNA | 34693750 | 34695318 | 34693750 | ID=MsG0880044041.01.T01;Parent=MsG0880044041.01;Name=MsG0880044041.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|444 |
| Chr8 | exon | 34693750 | 34693891 | 34693750 | ID=MsG0880044041.01.T01:exon:20553;Parent=MsG0880044041.01.T01 |
| Chr8 | exon | 34694126 | 34695318 | 34694126 | ID=MsG0880044041.01.T01:exon:20552;Parent=MsG0880044041.01.T01 |
| Chr8 | CDS | 34693750 | 34693891 | 34693750 | ID=MsG0880044041.01.T01:cds;Parent=MsG0880044041.01.T01 |
| Chr8 | CDS | 34694126 | 34695318 | 34694126 | ID=MsG0880044041.01.T01:cds;Parent=MsG0880044041.01.T01 |
| Gene Sequence |
| Protein sequence |
