Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028438.01.T01 | XP_003615694.1 | 95.405 | 370 | 15 | 1 | 1 | 368 | 22 | 391 | 0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028438.01.T01 | P48625 | 79.945 | 364 | 69 | 1 | 3 | 362 | 11 | 374 | 0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028438.01.T01 | G7JZI3 | 95.405 | 370 | 15 | 1 | 1 | 368 | 22 | 391 | 0.0 | 711 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480022891.01 | MsG0580028438.01 | 0.804915 | 1.717864e-49 | 8.967811e-47 |
| MsG0480023384.01 | MsG0580028438.01 | 0.815521 | 8.861211e-52 | 6.123491e-49 |
| MsG0480023387.01 | MsG0580028438.01 | 0.820027 | 8.518473e-53 | 6.664425e-50 |
| MsG0580028438.01 | MsG0580029919.01 | 0.819246 | 1.284407e-52 | 9.831216e-50 |
| MsG0580028438.01 | MsG0780040430.01 | 0.805579 | 1.247140e-49 | 6.621905e-47 |
| MsG0580028438.01 | MsG0780041482.01 | 0.828141 | 1.060396e-54 | 1.044932e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180006015.01 | MsG0580028438.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028438.01.T01 | MTR_5g071170 | 95.405 | 370 | 15 | 1 | 1 | 368 | 22 | 391 | 0.0 | 711 |
| MsG0580028438.01.T01 | MTR_3g464330 | 76.309 | 363 | 86 | 0 | 3 | 365 | 17 | 379 | 0.0 | 563 |
| MsG0580028438.01.T01 | MTR_7g068780 | 71.510 | 351 | 100 | 0 | 12 | 362 | 89 | 439 | 0.0 | 556 |
| MsG0580028438.01.T01 | MTR_4g015630 | 72.650 | 351 | 96 | 0 | 12 | 362 | 83 | 433 | 0.0 | 535 |
| MsG0580028438.01.T01 | MTR_7g068780 | 69.323 | 251 | 77 | 0 | 12 | 262 | 89 | 339 | 2.92e-132 | 382 |
| MsG0580028438.01.T01 | MTR_1g054035 | 38.602 | 329 | 182 | 7 | 9 | 320 | 20 | 345 | 1.24e-69 | 223 |
| MsG0580028438.01.T01 | MTR_7g093200 | 37.805 | 328 | 183 | 6 | 15 | 324 | 75 | 399 | 5.43e-68 | 221 |
| MsG0580028438.01.T01 | MTR_1g111880 | 37.313 | 335 | 177 | 9 | 3 | 321 | 11 | 328 | 7.77e-59 | 195 |
| MsG0580028438.01.T01 | MTR_4g130980 | 28.125 | 320 | 212 | 10 | 8 | 322 | 91 | 397 | 1.07e-30 | 122 |
| MsG0580028438.01.T01 | MTR_2g460790 | 27.824 | 363 | 230 | 12 | 8 | 361 | 92 | 431 | 2.08e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028438.01.T01 | AT5G05580 | 70.704 | 355 | 104 | 0 | 11 | 365 | 79 | 433 | 0.0 | 556 |
| MsG0580028438.01.T01 | AT3G11170 | 70.028 | 357 | 107 | 0 | 9 | 365 | 84 | 440 | 0.0 | 550 |
| MsG0580028438.01.T01 | AT2G29980 | 70.538 | 353 | 104 | 0 | 11 | 363 | 24 | 376 | 0.0 | 527 |
| MsG0580028438.01.T01 | AT5G05580 | 71.667 | 300 | 85 | 0 | 11 | 310 | 79 | 378 | 5.84e-169 | 476 |
| MsG0580028438.01.T01 | AT2G29980 | 69.291 | 254 | 78 | 0 | 9 | 262 | 22 | 275 | 1.53e-127 | 368 |
| MsG0580028438.01.T01 | AT3G12120 | 38.462 | 325 | 178 | 9 | 15 | 321 | 25 | 345 | 3.32e-68 | 219 |
| MsG0580028438.01.T01 | AT3G12120 | 38.462 | 325 | 178 | 9 | 15 | 321 | 25 | 345 | 3.32e-68 | 219 |
| MsG0580028438.01.T01 | AT4G30950 | 27.987 | 318 | 211 | 9 | 7 | 319 | 91 | 395 | 1.06e-28 | 116 |
Find 79 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAGGCACAATGTTT+TGG | 0.195045 | 5:-80506762 | MsG0580028438.01.T01:CDS |
| GTTTGCATATCCAATTTATT+TGG | 0.197044 | 5:-80506075 | MsG0580028438.01.T01:intron |
| CTAATATCTGCTATCTTAAA+TGG | 0.243193 | 5:+80506925 | None:intergenic |
| TTTCTAATTCTCAAGCTATA+TGG | 0.288125 | 5:-80505819 | MsG0580028438.01.T01:CDS |
| TTCTTCACCCAACAATGTTT+TGG | 0.289522 | 5:+80506892 | None:intergenic |
| AGCTATATGGAGTTCCCTAT+TGG | 0.343575 | 5:-80505806 | MsG0580028438.01.T01:CDS |
| TGAAAGTAACTTTACCCAAT+AGG | 0.348461 | 5:+80505791 | None:intergenic |
| CCTTGAAGAGGCCAATAAAT+TGG | 0.355834 | 5:+80506775 | None:intergenic |
| AAGCTTCTCAGATAGTTCTT+TGG | 0.357997 | 5:-80506580 | MsG0580028438.01.T01:CDS |
| AAGTATTTAATTAGTTGAAA+TGG | 0.361740 | 5:+80505046 | None:intergenic |
| CCAATTTATTGGCCTCTTCA+AGG | 0.375978 | 5:-80506775 | MsG0580028438.01.T01:CDS |
| CTGCTATTCCAAAACATTGT+TGG | 0.377085 | 5:-80506900 | MsG0580028438.01.T01:CDS |
| AGTAGAAGTCCTGGAAAATC+AGG | 0.381452 | 5:-80505966 | MsG0580028438.01.T01:CDS |
| GAATTGAGGAATGCAAAATA+TGG | 0.383781 | 5:+80506541 | None:intergenic |
| GGGTGAGAACAAATCGCTAT+AGG | 0.387681 | 5:+80505929 | None:intergenic |
| ACAACAGTTGATCGTGACTA+TGG | 0.390063 | 5:-80505362 | MsG0580028438.01.T01:CDS |
| TGCTATTCCAAAACATTGTT+GGG | 0.400992 | 5:-80506899 | MsG0580028438.01.T01:CDS |
| GACAGTTTCAACAGTTTGTT+GGG | 0.406458 | 5:-80505889 | MsG0580028438.01.T01:CDS |
| GCTATATGGAGTTCCCTATT+GGG | 0.416062 | 5:-80505805 | MsG0580028438.01.T01:intron |
| GAAAGTAACTTTACCCAATA+GGG | 0.437664 | 5:+80505792 | None:intergenic |
| CTTATTCATTGTGCTTCTTG+TGG | 0.443124 | 5:+80504948 | None:intergenic |
| GGTGAGAACAAATCGCTATA+GGG | 0.449977 | 5:+80505930 | None:intergenic |
| TGACAGTTTCAACAGTTTGT+TGG | 0.453704 | 5:-80505890 | MsG0580028438.01.T01:CDS |
| AGGTGATAATGAGGAATTTG+AGG | 0.460595 | 5:+80505284 | None:intergenic |
| ATTATCTTAGTTGACAGAAA+AGG | 0.475863 | 5:-80506156 | MsG0580028438.01.T01:intron |
| TATAGCTTGAGAATTAGAAA+TGG | 0.481204 | 5:+80505822 | None:intergenic |
| CACTAGGGTCAAATTCACTA+TGG | 0.482540 | 5:+80506956 | None:intergenic |
| TTAAATGGTGGAGGAGCACT+AGG | 0.483704 | 5:+80506940 | None:intergenic |
| CTGCAATTCAGTTTGATAGC+TGG | 0.490230 | 5:-80506807 | MsG0580028438.01.T01:CDS |
| TTCTTTGGTGAATAACTTGG+TGG | 0.490927 | 5:-80506565 | MsG0580028438.01.T01:CDS |
| GCAGATATTTGTAATGTGGT+TGG | 0.498560 | 5:-80505593 | MsG0580028438.01.T01:intron |
| TTAATTAGTTGAAATGGAAG+TGG | 0.500852 | 5:+80505052 | None:intergenic |
| GGATATGCAAACAATGGTAA+AGG | 0.503671 | 5:+80506086 | None:intergenic |
| TTCTTGTTCCATACCATGGA+TGG | 0.504417 | 5:-80506521 | MsG0580028438.01.T01:intron |
| AACTATCTGAGAAGCTTCCA+TGG | 0.506224 | 5:+80506586 | None:intergenic |
| GGTGATAATGAGGAATTTGA+GGG | 0.507016 | 5:+80505285 | None:intergenic |
| TTCACTAACCATCCATGGTA+TGG | 0.508807 | 5:+80506513 | None:intergenic |
| TCAATTCTTGTTCCATACCA+TGG | 0.512241 | 5:-80506525 | MsG0580028438.01.T01:CDS |
| CATCCTTCTCAACATTCCCA+TGG | 0.520258 | 5:+80506339 | None:intergenic |
| TTTCAGTGGAGTAGAAGTCC+TGG | 0.522116 | 5:-80505975 | MsG0580028438.01.T01:intron |
| ACTATGGTTGTAGCCACCAT+TGG | 0.526256 | 5:+80506972 | None:intergenic |
| TAGTTCTTTGGTGAATAACT+TGG | 0.527951 | 5:-80506568 | MsG0580028438.01.T01:CDS |
| TCATTATCACCTTGTTGAAG+CGG | 0.530017 | 5:-80505273 | MsG0580028438.01.T01:intron |
| TTGTGCTTCTTGTGGAGCTG+AGG | 0.530462 | 5:+80504956 | None:intergenic |
| CAAAACATTGTGCCTTGAAG+AGG | 0.537908 | 5:+80506763 | None:intergenic |
| TAGGAATGGAGTTATCTAAG+AGG | 0.552803 | 5:-80505392 | MsG0580028438.01.T01:CDS |
| CAGTTGATCGTGACTATGGT+TGG | 0.558183 | 5:-80505358 | MsG0580028438.01.T01:CDS |
| TCTGCTATCTTAAATGGTGG+AGG | 0.559855 | 5:+80506931 | None:intergenic |
| GAAACAATGGTTGTAACCAA+TGG | 0.561552 | 5:-80506988 | None:intergenic |
| AAAACACATCATCAAAACCA+TGG | 0.564668 | 5:-80506356 | MsG0580028438.01.T01:CDS |
| AATAACATTCATCATGACAT+TGG | 0.566954 | 5:-80505332 | MsG0580028438.01.T01:CDS |
| AAACCATGGGAATGTTGAGA+AGG | 0.567280 | 5:-80506342 | MsG0580028438.01.T01:CDS |
| GATCACTTCGTAAGTGACAC+TGG | 0.567578 | 5:-80505004 | MsG0580028438.01.T01:CDS |
| TGTTGAGAAGGATGAGTCAT+GGG | 0.576329 | 5:-80506330 | MsG0580028438.01.T01:CDS |
| AAATGCAGATATTTGTAATG+TGG | 0.581383 | 5:-80505597 | MsG0580028438.01.T01:intron |
| ATGTTGAGAAGGATGAGTCA+TGG | 0.582381 | 5:-80506331 | MsG0580028438.01.T01:CDS |
| AAGTTATGTTCTTAGAGATG+TGG | 0.583661 | 5:-80506854 | MsG0580028438.01.T01:CDS |
| TCTTTGGTGAATAACTTGGT+GGG | 0.585629 | 5:-80506564 | MsG0580028438.01.T01:CDS |
| ACTATTTCACTAACCATCCA+TGG | 0.593170 | 5:+80506508 | None:intergenic |
| GCTTCAACAAGGTGATAATG+AGG | 0.594371 | 5:+80505275 | None:intergenic |
| AAACACATCATCAAAACCAT+GGG | 0.596737 | 5:-80506355 | MsG0580028438.01.T01:CDS |
| TTTACCTTGCCACGGTACCA+TGG | 0.598110 | 5:+80505526 | None:intergenic |
| TAGAAATGGACTAGTTGTGA+AGG | 0.602191 | 5:+80505836 | None:intergenic |
| TAAATTGGATATGCAAACAA+TGG | 0.608374 | 5:+80506080 | None:intergenic |
| TTATGTTCTTAGAGATGTGG+TGG | 0.609151 | 5:-80506851 | MsG0580028438.01.T01:CDS |
| GAATGGAGTTATCTAAGAGG+TGG | 0.609571 | 5:-80505389 | MsG0580028438.01.T01:CDS |
| ATATCTGCTATCTTAAATGG+TGG | 0.622664 | 5:+80506928 | None:intergenic |
| ACAATGGTTGTAACCAATGG+TGG | 0.624372 | 5:-80506985 | MsG0580028438.01.T01:CDS |
| GTCACATACTTGCATCACCA+CGG | 0.626452 | 5:-80505565 | MsG0580028438.01.T01:CDS |
| ATTACCATGGTACCGTGGCA+AGG | 0.629596 | 5:-80505530 | MsG0580028438.01.T01:intron |
| TTTGTTTGGAATAGTGGCCA+TGG | 0.643837 | 5:-80506603 | MsG0580028438.01.T01:intron |
| GTAGAAGTCCTGGAAAATCA+GGG | 0.649940 | 5:-80505965 | MsG0580028438.01.T01:CDS |
| ATGGTATGGAACAAGAATTG+AGG | 0.651980 | 5:+80506527 | None:intergenic |
| ATTGTTGGGTGAAGAACACA+TGG | 0.660332 | 5:-80506885 | MsG0580028438.01.T01:CDS |
| AAGTAATTACCGCTTCAACA+AGG | 0.661057 | 5:+80505264 | None:intergenic |
| CAGAAATTACCATGGTACCG+TGG | 0.684670 | 5:-80505535 | MsG0580028438.01.T01:CDS |
| GTTACATGCAGAAATTACCA+TGG | 0.698294 | 5:-80505543 | MsG0580028438.01.T01:CDS |
| TAAATGGTGGAGGAGCACTA+GGG | 0.705178 | 5:+80506941 | None:intergenic |
| GTAATTTCTGCATGTAACCG+TGG | 0.728688 | 5:+80505548 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATAATTATTTAAT+AGG | - | Chr5:80505886-80505905 | MsG0580028438.01.T01:CDS | 0.0% |
| !! | TATAATAATCATTTATAAGA+CGG | + | Chr5:80506300-80506319 | None:intergenic | 10.0% |
| !! | AAGTATTTAATTAGTTGAAA+TGG | + | Chr5:80506888-80506907 | None:intergenic | 15.0% |
| !! | ATAAATAATTGATTGATTGA+AGG | + | Chr5:80506449-80506468 | None:intergenic | 15.0% |
| !! | TAAAATTATTAATGTTTCAG+TGG | - | Chr5:80505942-80505961 | MsG0580028438.01.T01:CDS | 15.0% |
| !!! | TTATATTATATGCATAGTTT+TGG | - | Chr5:80505675-80505694 | MsG0580028438.01.T01:intron | 15.0% |
| !! | AAAAAACTCACCAAATAAAT+TGG | + | Chr5:80505869-80505888 | None:intergenic | 20.0% |
| !! | AATTATTTATGTGCGTAATT+AGG | - | Chr5:80506459-80506478 | MsG0580028438.01.T01:intron | 20.0% |
| !! | ATAATCAATAAATCACATAC+TGG | + | Chr5:80505629-80505648 | None:intergenic | 20.0% |
| !! | ATTTCAATTCTTTGCTTTAA+TGG | - | Chr5:80505530-80505549 | MsG0580028438.01.T01:intron | 20.0% |
| !! | TATGTTAATGTTATGTCATA+TGG | - | Chr5:80505265-80505284 | MsG0580028438.01.T01:intron | 20.0% |
| ! | AAATGCAGATATTTGTAATG+TGG | - | Chr5:80506334-80506353 | MsG0580028438.01.T01:CDS | 25.0% |
| ! | AATAACATTCATCATGACAT+TGG | - | Chr5:80506599-80506618 | MsG0580028438.01.T01:intron | 25.0% |
| ! | ATTATCTTAGTTGACAGAAA+AGG | - | Chr5:80505775-80505794 | MsG0580028438.01.T01:intron | 25.0% |
| ! | CTAATATCTGCTATCTTAAA+TGG | + | Chr5:80505009-80505028 | None:intergenic | 25.0% |
| ! | GTTTGCATATCCAATTTATT+TGG | - | Chr5:80505856-80505875 | MsG0580028438.01.T01:CDS | 25.0% |
| ! | TAAATTGGATATGCAAACAA+TGG | + | Chr5:80505854-80505873 | None:intergenic | 25.0% |
| ! | TATAGCTTGAGAATTAGAAA+TGG | + | Chr5:80506112-80506131 | None:intergenic | 25.0% |
| ! | TTAATTAGTTGAAATGGAAG+TGG | + | Chr5:80506882-80506901 | None:intergenic | 25.0% |
| ! | TTGGTTAGAGAACTAAAAAT+AGG | + | Chr5:80506712-80506731 | None:intergenic | 25.0% |
| ! | TTTCTAATTCTCAAGCTATA+TGG | - | Chr5:80506112-80506131 | MsG0580028438.01.T01:CDS | 25.0% |
| !!! | ATTATATTTTTACCTTGCCA+CGG | + | Chr5:80506416-80506435 | None:intergenic | 25.0% |
| !!! | GAAATAGTTTCTAGAATTGT+TGG | - | Chr5:80505438-80505457 | MsG0580028438.01.T01:intron | 25.0% |
| !!! | TATTATATGCATAGTTTTGG+TGG | - | Chr5:80505678-80505697 | MsG0580028438.01.T01:intron | 25.0% |
| !!! | TTTGCTTTAATGGATTTTTC+AGG | - | Chr5:80505540-80505559 | MsG0580028438.01.T01:CDS | 25.0% |
| AAAACACATCATCAAAACCA+TGG | - | Chr5:80505575-80505594 | MsG0580028438.01.T01:CDS | 30.0% | |
| AAACACATCATCAAAACCAT+GGG | - | Chr5:80505576-80505595 | MsG0580028438.01.T01:CDS | 30.0% | |
| AAGTTATGTTCTTAGAGATG+TGG | - | Chr5:80505077-80505096 | MsG0580028438.01.T01:CDS | 30.0% | |
| ATATCTGCTATCTTAAATGG+TGG | + | Chr5:80505006-80505025 | None:intergenic | 30.0% | |
| CGGTAAATTTGGTAGAATTA+CGG | + | Chr5:80506265-80506284 | None:intergenic | 30.0% | |
| GAAAGTAACTTTACCCAATA+GGG | + | Chr5:80506142-80506161 | None:intergenic | 30.0% | |
| GAATTGAGGAATGCAAAATA+TGG | + | Chr5:80505393-80505412 | None:intergenic | 30.0% | |
| GTTTCGATAAACGGTAAATT+TGG | + | Chr5:80506276-80506295 | None:intergenic | 30.0% | |
| TAGTTCTTTGGTGAATAACT+TGG | - | Chr5:80505363-80505382 | MsG0580028438.01.T01:CDS | 30.0% | |
| TGAAAGTAACTTTACCCAAT+AGG | + | Chr5:80506143-80506162 | None:intergenic | 30.0% | |
| TGCTATTCCAAAACATTGTT+GGG | - | Chr5:80505032-80505051 | MsG0580028438.01.T01:CDS | 30.0% | |
| ! | AAAGCAGCAAAACCAATTTT+TGG | - | Chr5:80506825-80506844 | MsG0580028438.01.T01:CDS | 30.0% |
| ! | AAGTTTTTGCCATGAAACAA+TGG | + | Chr5:80505492-80505511 | None:intergenic | 30.0% |
| ! | GTCACTTCTTTTCTTTCATT+GGG | + | Chr5:80506025-80506044 | None:intergenic | 30.0% |
| ! | TCATTTTGTCCATTGTTTCA+TGG | - | Chr5:80505480-80505499 | MsG0580028438.01.T01:intron | 30.0% |
| ! | TTTTGGGCAATTTTTGTTCT+TGG | - | Chr5:80505186-80505205 | MsG0580028438.01.T01:intron | 30.0% |
| ! | TTTTTGTTCTTGGACATGAT+TGG | - | Chr5:80505196-80505215 | MsG0580028438.01.T01:intron | 30.0% |
| !! | AGTTTGATAGCTGGTATTTT+TGG | - | Chr5:80505133-80505152 | MsG0580028438.01.T01:intron | 30.0% |
| !! | TGTCACTTCTTTTCTTTCAT+TGG | + | Chr5:80506026-80506045 | None:intergenic | 30.0% |
| !!! | GGTATTTTTGGCCAATTTAT+TGG | - | Chr5:80505145-80505164 | MsG0580028438.01.T01:intron | 30.0% |
| !!! | TGATGTTTTGTTTGGAATAG+TGG | - | Chr5:80505322-80505341 | MsG0580028438.01.T01:CDS | 30.0% |
| AAGCTTCTCAGATAGTTCTT+TGG | - | Chr5:80505351-80505370 | MsG0580028438.01.T01:CDS | 35.0% | |
| AAGTAATTACCGCTTCAACA+AGG | + | Chr5:80506670-80506689 | None:intergenic | 35.0% | |
| ACTATTTCACTAACCATCCA+TGG | + | Chr5:80505426-80505445 | None:intergenic | 35.0% | |
| ACTCACTCATGTGTACAATT+TGG | - | Chr5:80506516-80506535 | MsG0580028438.01.T01:intron | 35.0% | |
| ACTCATGTGTACAATTTGGT+AGG | - | Chr5:80506520-80506539 | MsG0580028438.01.T01:intron | 35.0% | |
| ACTTCATTGTTCCCTTTGTT+TGG | + | Chr5:80505710-80505729 | None:intergenic | 35.0% | |
| ATCAGACTCAACAAGATTTG+AGG | + | Chr5:80506495-80506514 | None:intergenic | 35.0% | |
| ATGGTATGGAACAAGAATTG+AGG | + | Chr5:80505407-80505426 | None:intergenic | 35.0% | |
| CATCTTACGTAAGAAATGAC+CGG | + | Chr5:80506748-80506767 | None:intergenic | 35.0% | |
| CGGTAATAGTCTCCAAAAAT+TGG | + | Chr5:80506840-80506859 | None:intergenic | 35.0% | |
| CTGCTATTCCAAAACATTGT+TGG | - | Chr5:80505031-80505050 | MsG0580028438.01.T01:CDS | 35.0% | |
| GCAGATATTTGTAATGTGGT+TGG | - | Chr5:80506338-80506357 | MsG0580028438.01.T01:CDS | 35.0% | |
| GGATATGCAAACAATGGTAA+AGG | + | Chr5:80505848-80505867 | None:intergenic | 35.0% | |
| GTTACATGCAGAAATTACCA+TGG | - | Chr5:80506388-80506407 | MsG0580028438.01.T01:intron | 35.0% | |
| GTTGAAGCGGTAATTACTTA+CGG | - | Chr5:80506671-80506690 | MsG0580028438.01.T01:intron | 35.0% | |
| TAAGACGGTGTTTCGATAAA+CGG | + | Chr5:80506285-80506304 | None:intergenic | 35.0% | |
| TAGGAATGGAGTTATCTAAG+AGG | - | Chr5:80506539-80506558 | MsG0580028438.01.T01:CDS | 35.0% | |
| TCAAAAACACGGGTAAGTTT+AGG | + | Chr5:80506792-80506811 | None:intergenic | 35.0% | |
| TCAATTCTTGTTCCATACCA+TGG | - | Chr5:80505406-80505425 | MsG0580028438.01.T01:intron | 35.0% | |
| TCATTATCACCTTGTTGAAG+CGG | - | Chr5:80506658-80506677 | MsG0580028438.01.T01:intron | 35.0% | |
| TCTGCAATGAGTCAAAAACA+CGG | + | Chr5:80506803-80506822 | None:intergenic | 35.0% | |
| TCTTTGGTGAATAACTTGGT+GGG | - | Chr5:80505367-80505386 | MsG0580028438.01.T01:CDS | 35.0% | |
| TGACAGTTTCAACAGTTTGT+TGG | - | Chr5:80506041-80506060 | MsG0580028438.01.T01:intron | 35.0% | |
| TGTGTACAATTTGGTAGGAA+TGG | - | Chr5:80506525-80506544 | MsG0580028438.01.T01:CDS | 35.0% | |
| TTATGTTCTTAGAGATGTGG+TGG | - | Chr5:80505080-80505099 | MsG0580028438.01.T01:CDS | 35.0% | |
| TTCTTTGGTGAATAACTTGG+TGG | - | Chr5:80505366-80505385 | MsG0580028438.01.T01:CDS | 35.0% | |
| ! | AGGTGATAATGAGGAATTTG+AGG | + | Chr5:80506650-80506669 | None:intergenic | 35.0% |
| ! | GACAGTTTCAACAGTTTGTT+GGG | - | Chr5:80506042-80506061 | MsG0580028438.01.T01:intron | 35.0% |
| ! | GGTGATAATGAGGAATTTGA+GGG | + | Chr5:80506649-80506668 | None:intergenic | 35.0% |
| ! | TCTTCAAGGCACAATGTTTT+GGG | - | Chr5:80505170-80505189 | MsG0580028438.01.T01:intron | 35.0% |
| ! | TTCTTCACCCAACAATGTTT+TGG | + | Chr5:80505042-80505061 | None:intergenic | 35.0% |
| !! | GCGAACATTGATGTTTTGTT+TGG | - | Chr5:80505314-80505333 | MsG0580028438.01.T01:CDS | 35.0% |
| !! | TAGAAATGGACTAGTTGTGA+AGG | + | Chr5:80506098-80506117 | None:intergenic | 35.0% |
| !!! | GTGATGATTTTTCTGGTTCA+CGG | + | Chr5:80506860-80506879 | None:intergenic | 35.0% |
| AAACCATGGGAATGTTGAGA+AGG | - | Chr5:80505589-80505608 | MsG0580028438.01.T01:CDS | 40.0% | |
| AACTATCTGAGAAGCTTCCA+TGG | + | Chr5:80505348-80505367 | None:intergenic | 40.0% | |
| ACAACAGTTGATCGTGACTA+TGG | - | Chr5:80506569-80506588 | MsG0580028438.01.T01:CDS | 40.0% | |
| AGCTATATGGAGTTCCCTAT+TGG | - | Chr5:80506125-80506144 | MsG0580028438.01.T01:CDS | 40.0% | |
| AGTAGAAGTCCTGGAAAATC+AGG | - | Chr5:80505965-80505984 | MsG0580028438.01.T01:CDS | 40.0% | |
| AGTTCTCTAACCAATGTCTC+AGG | - | Chr5:80506718-80506737 | MsG0580028438.01.T01:intron | 40.0% | |
| ATGTTGAGAAGGATGAGTCA+TGG | - | Chr5:80505600-80505619 | MsG0580028438.01.T01:intron | 40.0% | |
| ATTGTTGGGTGAAGAACACA+TGG | - | Chr5:80505046-80505065 | MsG0580028438.01.T01:CDS | 40.0% | |
| CAAAACATTGTGCCTTGAAG+AGG | + | Chr5:80505171-80505190 | None:intergenic | 40.0% | |
| CACTAGGGTCAAATTCACTA+TGG | + | Chr5:80504978-80504997 | None:intergenic | 40.0% | |
| CCTTGAAGAGGCCAATAAAT+TGG | + | Chr5:80505159-80505178 | None:intergenic | 40.0% | |
| CTGCAATGAGTCAAAAACAC+GGG | + | Chr5:80506802-80506821 | None:intergenic | 40.0% | |
| GAATGGAGTTATCTAAGAGG+TGG | - | Chr5:80506542-80506561 | MsG0580028438.01.T01:CDS | 40.0% | |
| GCTATATGGAGTTCCCTATT+GGG | - | Chr5:80506126-80506145 | MsG0580028438.01.T01:CDS | 40.0% | |
| GGTGAGAACAAATCGCTATA+GGG | + | Chr5:80506004-80506023 | None:intergenic | 40.0% | |
| GGTGGTTTAGTCCAAACAAA+GGG | - | Chr5:80505696-80505715 | MsG0580028438.01.T01:intron | 40.0% | |
| GTAATTTCTGCATGTAACCG+TGG | + | Chr5:80506386-80506405 | None:intergenic | 40.0% | |
| GTAGAAGTCCTGGAAAATCA+GGG | - | Chr5:80505966-80505985 | MsG0580028438.01.T01:CDS | 40.0% | |
| TCTGCTATCTTAAATGGTGG+AGG | + | Chr5:80505003-80505022 | None:intergenic | 40.0% | |
| TGGTGGTTTAGTCCAAACAA+AGG | - | Chr5:80505695-80505714 | MsG0580028438.01.T01:intron | 40.0% | |
| TGTTGAGAAGGATGAGTCAT+GGG | - | Chr5:80505601-80505620 | MsG0580028438.01.T01:intron | 40.0% | |
| TTCACTAACCATCCATGGTA+TGG | + | Chr5:80505421-80505440 | None:intergenic | 40.0% | |
| TTCTTGTTCCATACCATGGA+TGG | - | Chr5:80505410-80505429 | MsG0580028438.01.T01:intron | 40.0% | |
| ! | CCAATTTATTGGCCTCTTCA+AGG | - | Chr5:80505156-80505175 | MsG0580028438.01.T01:intron | 40.0% |
| ! | CTCTTCAAGGCACAATGTTT+TGG | - | Chr5:80505169-80505188 | MsG0580028438.01.T01:intron | 40.0% |
| ! | CTGCAATTCAGTTTGATAGC+TGG | - | Chr5:80505124-80505143 | MsG0580028438.01.T01:intron | 40.0% |
| ! | GCTTCAACAAGGTGATAATG+AGG | + | Chr5:80506659-80506678 | None:intergenic | 40.0% |
| ! | TTTGTTTGGAATAGTGGCCA+TGG | - | Chr5:80505328-80505347 | MsG0580028438.01.T01:CDS | 40.0% |
| !! | GGAAGTGGTGATGATTTTTC+TGG | + | Chr5:80506867-80506886 | None:intergenic | 40.0% |
| AACCAATGTCTCAGGATCAC+CGG | - | Chr5:80506726-80506745 | MsG0580028438.01.T01:intron | 45.0% | |
| ACTATGGTTGTAGCCACCAT+TGG | + | Chr5:80504962-80504981 | None:intergenic | 45.0% | |
| CAGAAATTACCATGGTACCG+TGG | - | Chr5:80506396-80506415 | MsG0580028438.01.T01:intron | 45.0% | |
| CAGTTGATCGTGACTATGGT+TGG | - | Chr5:80506573-80506592 | MsG0580028438.01.T01:CDS | 45.0% | |
| CATCCTTCTCAACATTCCCA+TGG | + | Chr5:80505595-80505614 | None:intergenic | 45.0% | |
| GATCACTTCGTAAGTGACAC+TGG | - | Chr5:80506927-80506946 | MsG0580028438.01.T01:CDS | 45.0% | |
| GGGTGAGAACAAATCGCTAT+AGG | + | Chr5:80506005-80506024 | None:intergenic | 45.0% | |
| GTCACATACTTGCATCACCA+CGG | - | Chr5:80506366-80506385 | MsG0580028438.01.T01:CDS | 45.0% | |
| TTTCAGTGGAGTAGAAGTCC+TGG | - | Chr5:80505956-80505975 | MsG0580028438.01.T01:CDS | 45.0% | |
| ! | AAGTGTGACCCTGATTTTCC+AGG | + | Chr5:80505977-80505996 | None:intergenic | 45.0% |
| !! | TAAATGGTGGAGGAGCACTA+GGG | + | Chr5:80504993-80505012 | None:intergenic | 45.0% |
| !! | TTAAATGGTGGAGGAGCACT+AGG | + | Chr5:80504994-80505013 | None:intergenic | 45.0% |
| ATTACCATGGTACCGTGGCA+AGG | - | Chr5:80506401-80506420 | MsG0580028438.01.T01:intron | 50.0% | |
| TTGTGCTTCTTGTGGAGCTG+AGG | + | Chr5:80506978-80506997 | None:intergenic | 50.0% | |
| TTTACCTTGCCACGGTACCA+TGG | + | Chr5:80506408-80506427 | None:intergenic | 50.0% | |
| GACCGGTGATCCTGAGACAT+TGG | + | Chr5:80506731-80506750 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 80504949 | 80507004 | 80504949 | ID=MsG0580028438.01;Name=MsG0580028438.01 |
| Chr5 | mRNA | 80504949 | 80507004 | 80504949 | ID=MsG0580028438.01.T01;Parent=MsG0580028438.01;Name=MsG0580028438.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|8|0|368 |
| Chr5 | exon | 80506736 | 80507004 | 80506736 | ID=MsG0580028438.01.T01:exon:23761;Parent=MsG0580028438.01.T01 |
| Chr5 | exon | 80506522 | 80506611 | 80506522 | ID=MsG0580028438.01.T01:exon:23760;Parent=MsG0580028438.01.T01 |
| Chr5 | exon | 80506325 | 80506391 | 80506325 | ID=MsG0580028438.01.T01:exon:23759;Parent=MsG0580028438.01.T01 |
| Chr5 | exon | 80506076 | 80506168 | 80506076 | ID=MsG0580028438.01.T01:exon:23758;Parent=MsG0580028438.01.T01 |
| Chr5 | exon | 80505806 | 80505991 | 80505806 | ID=MsG0580028438.01.T01:exon:23757;Parent=MsG0580028438.01.T01 |
| Chr5 | exon | 80505531 | 80505611 | 80505531 | ID=MsG0580028438.01.T01:exon:23756;Parent=MsG0580028438.01.T01 |
| Chr5 | exon | 80505274 | 80505411 | 80505274 | ID=MsG0580028438.01.T01:exon:23755;Parent=MsG0580028438.01.T01 |
| Chr5 | exon | 80504949 | 80505131 | 80504949 | ID=MsG0580028438.01.T01:exon:23754;Parent=MsG0580028438.01.T01 |
| Chr5 | CDS | 80506736 | 80507004 | 80506736 | ID=MsG0580028438.01.T01:cds;Parent=MsG0580028438.01.T01 |
| Chr5 | CDS | 80506522 | 80506611 | 80506522 | ID=MsG0580028438.01.T01:cds;Parent=MsG0580028438.01.T01 |
| Chr5 | CDS | 80506325 | 80506391 | 80506325 | ID=MsG0580028438.01.T01:cds;Parent=MsG0580028438.01.T01 |
| Chr5 | CDS | 80506076 | 80506168 | 80506076 | ID=MsG0580028438.01.T01:cds;Parent=MsG0580028438.01.T01 |
| Chr5 | CDS | 80505806 | 80505991 | 80505806 | ID=MsG0580028438.01.T01:cds;Parent=MsG0580028438.01.T01 |
| Chr5 | CDS | 80505531 | 80505611 | 80505531 | ID=MsG0580028438.01.T01:cds;Parent=MsG0580028438.01.T01 |
| Chr5 | CDS | 80505274 | 80505411 | 80505274 | ID=MsG0580028438.01.T01:cds;Parent=MsG0580028438.01.T01 |
| Chr5 | CDS | 80504949 | 80505131 | 80504949 | ID=MsG0580028438.01.T01:cds;Parent=MsG0580028438.01.T01 |
| Gene Sequence |
| Protein sequence |
