AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029129.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029129.01.T01 MTR_5g081630 97.541 122 3 0 1 122 67 188 4.14e-80 241
MsG0580029129.01.T01 MTR_3g069960 77.869 122 27 0 1 122 67 188 1.42e-62 196
MsG0580029129.01.T01 MTR_3g069960 77.869 122 27 0 1 122 120 241 1.93e-62 194
MsG0580029129.01.T01 MTR_3g069960 77.869 122 27 0 1 122 120 241 6.77e-62 196
MsG0580029129.01.T01 MTR_4g104510 36.296 135 81 2 3 133 136 269 4.35e-24 96.3
MsG0580029129.01.T01 MTR_4g104510 36.296 135 81 2 3 133 136 269 4.48e-24 96.3
MsG0580029129.01.T02 MTR_5g081630 97.449 196 5 0 1 196 67 262 5.52e-136 386
MsG0580029129.01.T02 MTR_3g069960 77.157 197 45 0 1 197 120 316 1.08e-109 318
MsG0580029129.01.T02 MTR_3g069960 76.531 196 46 0 1 196 67 262 3.99e-109 318
MsG0580029129.01.T02 MTR_3g069960 76.531 196 46 0 1 196 120 315 2.91e-108 317
MsG0580029129.01.T02 MTR_4g104510 43.979 191 106 1 3 193 136 325 1.59e-52 174
MsG0580029129.01.T02 MTR_4g104510 43.979 191 106 1 3 193 136 325 1.79e-52 174
MsG0580029129.01.T02 MTR_1g070470 35.638 188 114 4 3 186 119 303 2.08e-27 107
MsG0580029129.01.T02 MTR_1g492640 31.937 191 121 3 4 186 28 217 8.47e-20 85.9
MsG0580029129.01.T02 MTR_1g492640 31.937 191 121 3 4 186 142 331 9.41e-20 85.9
MsG0580029129.01.T02 MTR_1g492640 31.937 191 121 3 4 186 160 349 9.93e-20 86.3
MsG0580029129.01.T02 MTR_1g492640 31.937 191 121 3 4 186 160 349 1.83e-19 85.9
MsG0580029129.01.T02 MTR_4g055610 31.383 188 118 4 8 186 145 330 3.34e-19 85.1
MsG0580029129.01.T02 MTR_8g099320 28.351 194 129 3 2 186 126 318 7.45e-16 75.5
MsG0580029129.01.T02 MTR_3g085820 31.472 197 118 9 6 194 134 321 4.45e-13 67.4
MsG0580029129.01.T02 MTR_2g101920 29.902 204 125 9 2 196 144 338 7.02e-13 67.0
MsG0580029129.01.T02 MTR_2g096830 27.805 205 133 6 2 199 111 307 1.10e-11 63.2
MsG0580029129.01.T02 MTR_2g096830 27.805 205 133 6 2 199 111 307 1.34e-11 62.8
MsG0580029129.01.T02 MTR_5g054730 28.788 198 132 6 3 193 124 319 5.05e-11 61.2
MsG0580029129.01.T02 MTR_4g103890 26.961 204 130 6 2 196 107 300 9.64e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029129.01.T01 AT2G39890 76.230 122 29 0 1 122 67 188 1.11e-62 196
MsG0580029129.01.T01 AT2G39890 76.230 122 29 0 1 122 126 247 3.81e-62 196
MsG0580029129.01.T01 AT2G39890 76.230 122 29 0 1 122 126 247 3.81e-62 196
MsG0580029129.01.T01 AT3G55740 74.590 122 31 0 1 122 67 188 6.35e-61 192
MsG0580029129.01.T01 AT3G55740 74.590 122 31 0 1 122 67 188 6.35e-61 192
MsG0580029129.01.T01 AT2G36590 74.590 122 31 0 1 122 120 241 7.41e-61 190
MsG0580029129.01.T01 AT3G55740 74.590 122 31 0 1 122 123 244 1.67e-60 192
MsG0580029129.01.T01 AT2G36590 74.590 122 31 0 1 122 120 241 1.28e-59 190
MsG0580029129.01.T02 AT2G39890 76.020 196 47 0 1 196 67 262 5.09e-109 317
MsG0580029129.01.T02 AT3G55740 76.020 196 47 0 1 196 67 262 2.13e-108 316
MsG0580029129.01.T02 AT3G55740 76.020 196 47 0 1 196 67 262 2.13e-108 316
MsG0580029129.01.T02 AT2G39890 76.020 196 47 0 1 196 126 321 2.70e-108 318
MsG0580029129.01.T02 AT2G39890 76.020 196 47 0 1 196 126 321 2.70e-108 318
MsG0580029129.01.T02 AT3G55740 76.020 196 47 0 1 196 123 318 5.88e-108 317
MsG0580029129.01.T02 AT2G36590 73.762 202 52 1 1 201 120 321 1.05e-106 310
MsG0580029129.01.T02 AT2G36590 74.490 196 50 0 1 196 120 315 2.97e-104 307
MsG0580029129.01.T02 AT5G41800 29.121 182 123 3 2 178 125 305 5.22e-17 79.0
MsG0580029129.01.T02 AT1G08230 31.220 205 123 5 8 199 13 212 7.70e-17 77.8
MsG0580029129.01.T02 AT1G08230 31.220 205 123 5 8 199 13 212 7.70e-17 77.8
MsG0580029129.01.T02 AT1G08230 31.220 205 123 5 8 199 13 212 7.70e-17 77.8
MsG0580029129.01.T02 AT1G08230 31.220 205 123 5 8 199 32 231 9.66e-17 77.4
MsG0580029129.01.T02 AT1G08230 31.220 205 123 5 8 199 132 331 2.15e-16 77.0
MsG0580029129.01.T02 AT1G67640 28.293 205 132 7 2 199 125 321 2.48e-11 62.4
MsG0580029129.01.T02 AT1G24400 29.327 208 128 9 2 200 125 322 3.00e-11 62.0

Find 45 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACCAAACATGGGATTAA+AGG 0.240091 5:+92737201 MsG0580029129.01.T01:three_prime_UTR
TGGTTACCTTTGCAGGGTAC+TGG 0.248587 5:+92736438 MsG0580029129.01.T01:intron
TGGAGTTCTGCCATTATATT+TGG 0.256854 5:+92736418 MsG0580029129.01.T01:intron
AAGTCCGATGTACGAGTATT+TGG 0.263204 5:+92737179 MsG0580029129.01.T01:three_prime_UTR
GAACTTATCATTTAGAATCT+TGG 0.267192 5:+92737242 MsG0580029129.01.T01:three_prime_UTR
TTATATTTGGTTACCTTTGC+AGG 0.269050 5:+92736431 MsG0580029129.01.T01:intron
TTTGCAGGGTACTGGGCTTA+TGG 0.272236 5:+92736446 MsG0580029129.01.T01:intron
TGCGAAAACATGATAAGTTT+TGG 0.273586 5:-92737516 None:intergenic
CTCCGATTGTCAAAAGAATA+TGG 0.279198 5:-92737558 None:intergenic
TTCATCATGTTCTTTACAAC+TGG 0.341148 5:-92736371 None:intergenic
CTTTGGCATGGATCAACATT+TGG 0.342171 5:+92737432 MsG0580029129.01.T01:three_prime_UTR
TAACATCCATTCAAAAGCTT+TGG 0.380271 5:+92737415 MsG0580029129.01.T01:three_prime_UTR
ACTCCCTTTAATCCCATGTT+TGG 0.383334 5:-92737205 None:intergenic
AAAGCAGCAAAGTATTGGTT+TGG 0.387179 5:-92736582 None:intergenic
GCAAAGGTAACCAAATATAA+TGG 0.395610 5:-92736428 None:intergenic
GCCACAACTTTCACCCAGAT+TGG 0.422671 5:-92736509 None:intergenic
GGTTACCTTTGCAGGGTACT+GGG 0.432447 5:+92736439 MsG0580029129.01.T01:intron
TATTGAACATAATCATAAAT+CGG 0.449905 5:-92740876 None:intergenic
TCATTTAGAATCTTGGTAAG+AGG 0.460627 5:+92737249 MsG0580029129.01.T01:three_prime_UTR
ATACCAAACATGGGATTAAA+GGG 0.462442 5:+92737202 MsG0580029129.01.T01:three_prime_UTR
GATTTGCAAGGATAAATGTA+AGG 0.470613 5:-92737362 None:intergenic
GTTTGTTCTTATTTGTCACT+AGG 0.484789 5:-92737392 None:intergenic
GGAGATTTCATGAGCCTCAC+AGG 0.497696 5:+92737321 MsG0580029129.01.T01:three_prime_UTR
TCAGCTCTACTGCCATTCCT+TGG 0.498923 5:+92737300 MsG0580029129.01.T01:three_prime_UTR
ATAATGTCAAGGGACCAATC+TGG 0.517516 5:+92736495 MsG0580029129.01.T01:three_prime_UTR
TAATGTCAAGGGACCAATCT+GGG 0.520925 5:+92736496 MsG0580029129.01.T01:three_prime_UTR
TCCATTCAAAAGCTTTGGCA+TGG 0.524345 5:+92737420 MsG0580029129.01.T01:three_prime_UTR
TATATTTGGTTACCTTTGCA+GGG 0.528227 5:+92736432 MsG0580029129.01.T01:intron
ATTTGCAAGGATAAATGTAA+GGG 0.535895 5:-92737361 None:intergenic
CCGCAGCGCTGCAATAGTTG+CGG 0.572180 5:-92737477 None:intergenic
ACCAATCTGGGTGAAAGTTG+TGG 0.575627 5:+92736508 MsG0580029129.01.T01:three_prime_UTR
TGCAATGACTGATTGAAGAA+AGG 0.580697 5:-92736543 None:intergenic
CTCATGAAATCTCCAAGGAA+TGG 0.583815 5:-92737312 None:intergenic
GTATCCAAATACTCGTACAT+CGG 0.587381 5:-92737183 None:intergenic
AGTTGCGGCAATAGACATGA+TGG 0.590669 5:-92737462 None:intergenic
GAGTATTTGGATACCAAACA+TGG 0.591198 5:+92737192 MsG0580029129.01.T01:three_prime_UTR
TTTAGAATCTTGGTAAGAGG+TGG 0.593972 5:+92737252 MsG0580029129.01.T01:three_prime_UTR
ATATAATGGCAGAACTCCAA+CGG 0.622883 5:-92736414 None:intergenic
CTAGGTACATATGATTTGCA+AGG 0.626482 5:-92737374 None:intergenic
TGAGGCTCATGAAATCTCCA+AGG 0.630164 5:-92737317 None:intergenic
ATAAGCCCAGTACCCTGCAA+AGG 0.654594 5:-92736444 None:intergenic
TTTGCAAGGATAAATGTAAG+GGG 0.658355 5:-92737360 None:intergenic
CCGCAACTATTGCAGCGCTG+CGG 0.684459 5:+92737477 MsG0580029129.01.T01:three_prime_UTR
AGTATTTGGATACCAAACAT+GGG 0.691576 5:+92737193 MsG0580029129.01.T01:three_prime_UTR
ATGTGCTTATAGCTCCTGTG+AGG 0.733255 5:-92737335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATTTATGTTTATATTAA+GGG - Chr5:92738139-92738158 None:intergenic 10.0%
!! TTAAAAATTTAGTTAAAATG+TGG + Chr5:92736604-92736623 MsG0580029129.01.T01:intron 10.0%
!! TTATTTATGTTTATATTAAG+GGG - Chr5:92738138-92738157 None:intergenic 10.0%
!!! TAATTTTACTACTATTTATT+TGG + Chr5:92738353-92738372 MsG0580029129.01.T01:intron 10.0%
!!! TAATTTTATATATTCTATGT+AGG + Chr5:92734257-92734276 MsG0580029129.01.T01:five_prime_UTR 10.0%
!! ATATAAAAAAACTATTGATG+TGG + Chr5:92740316-92740335 MsG0580029129.01.T01:intron 15.0%
!! GGTTATTTATGTTTATATTA+AGG - Chr5:92738140-92738159 None:intergenic 15.0%
!! TAAGTTTACAACTATTTATT+TGG + Chr5:92738249-92738268 MsG0580029129.01.T01:intron 15.0%
!! TATTGAACATAATCATAAAT+CGG - Chr5:92740879-92740898 None:intergenic 15.0%
!! TTATGATGTTAAATTTGAAA+AGG - Chr5:92734240-92734259 None:intergenic 15.0%
!! TTATTATCTATCTAGTTAAA+GGG - Chr5:92733756-92733775 None:intergenic 15.0%
!!! AAAACATTATATAAGTTTTG+AGG - Chr5:92740854-92740873 None:intergenic 15.0%
!!! AAACATTATATAAGTTTTGA+GGG - Chr5:92740853-92740872 None:intergenic 15.0%
!!! AATCTTTTCATGATAAATAT+TGG + Chr5:92734642-92734661 MsG0580029129.01.T01:intron 15.0%
!!! AGAAAATTGGATTTTAAAAA+TGG - Chr5:92740263-92740282 None:intergenic 15.0%
!!! ATTTTTAAAATCCAATTTTC+TGG + Chr5:92740262-92740281 MsG0580029129.01.T01:intron 15.0%
!!! GTTCAAGTAATAAATTTTTT+AGG - Chr5:92737111-92737130 None:intergenic 15.0%
!!! TAATACTTAATTTGTAACTT+TGG - Chr5:92740514-92740533 None:intergenic 15.0%
!! AAAATAAAGGAACACAATTT+AGG - Chr5:92739434-92739453 None:intergenic 20.0%
!! AAAGAAACAATTAATTACAG+AGG - Chr5:92735306-92735325 None:intergenic 20.0%
!! AGAAGAGAATAATGTAATTA+TGG - Chr5:92734724-92734743 None:intergenic 20.0%
!! AGTAAAATATTTACGACAAT+TGG + Chr5:92736176-92736195 MsG0580029129.01.T01:CDS 20.0%
!! ATTATTGTTTCCTATATATG+CGG - Chr5:92739559-92739578 None:intergenic 20.0%
!! ATTCAGAAAGAATTGAAAAT+GGG + Chr5:92739664-92739683 MsG0580029129.01.T01:intron 20.0%
!! CAAACTACTTATAAAAGATT+TGG + Chr5:92733151-92733170 MsG0580029129.01.T01:five_prime_UTR 20.0%
!! CATAAACACTTATTATTTGA+GGG + Chr5:92733821-92733840 MsG0580029129.01.T01:five_prime_UTR 20.0%
!! GATAGTAAAAAATAAACTGT+TGG - Chr5:92736107-92736126 None:intergenic 20.0%
!! GTAAAATATTTACGACAATT+GGG + Chr5:92736177-92736196 MsG0580029129.01.T01:CDS 20.0%
!! GTTATTATCTATCTAGTTAA+AGG - Chr5:92733757-92733776 None:intergenic 20.0%
!! TAAAATATTTACGACAATTG+GGG + Chr5:92736178-92736197 MsG0580029129.01.T01:CDS 20.0%
!! TAACACACATATTTAATACT+TGG + Chr5:92735263-92735282 MsG0580029129.01.T01:intron 20.0%
!! TATTCAGAAAGAATTGAAAA+TGG + Chr5:92739663-92739682 MsG0580029129.01.T01:intron 20.0%
!! TCAAATGTTTATTGTTTGAT+TGG - Chr5:92737812-92737831 None:intergenic 20.0%
!! TCAAGTGATTATACTATTTA+TGG - Chr5:92739115-92739134 None:intergenic 20.0%
!! TGAAGAAATTTGAAAATTCT+TGG - Chr5:92739150-92739169 None:intergenic 20.0%
!! TTCCTAAGAAGTAATAAAAA+TGG - Chr5:92737867-92737886 None:intergenic 20.0%
!! TTTGGTCATTGAAATTATAA+GGG + Chr5:92734138-92734157 MsG0580029129.01.T01:five_prime_UTR 20.0%
!!! AAAGTGAGTTTTACTTTATT+TGG + Chr5:92736319-92736338 MsG0580029129.01.T01:intron 20.0%
!!! AACAAGGTAAAGATAAATTT+TGG - Chr5:92735901-92735920 None:intergenic 20.0%
!!! AATTGCTATTTCAAAAATTG+AGG + Chr5:92734355-92734374 MsG0580029129.01.T01:five_prime_UTR 20.0%
!!! ACAGTTTATTTTTTACTATC+AGG + Chr5:92736107-92736126 MsG0580029129.01.T01:intron 20.0%
!!! AGTAAAACTCACTTTAAAAA+TGG - Chr5:92736314-92736333 None:intergenic 20.0%
!!! AGTCTGTCATTTTAAAAATT+AGG + Chr5:92737018-92737037 MsG0580029129.01.T01:intron 20.0%
!!! ATTGCTATTTCAAAAATTGA+GGG + Chr5:92734356-92734375 MsG0580029129.01.T01:five_prime_UTR 20.0%
!!! ATTTGAAGTTGTTTTTAGTT+AGG - Chr5:92738022-92738041 None:intergenic 20.0%
!!! GGTTTTAAATTAAAGAATGT+CGG + Chr5:92734202-92734221 MsG0580029129.01.T01:five_prime_UTR 20.0%
!!! GTTTCTTTTTTTTTTAGAGA+AGG + Chr5:92738944-92738963 MsG0580029129.01.T01:intron 20.0%
!!! TTTTAAAAATGGACATAACT+CGG - Chr5:92740252-92740271 None:intergenic 20.0%
!!! TTTTGGTCATTGAAATTATA+AGG + Chr5:92734137-92734156 MsG0580029129.01.T01:five_prime_UTR 20.0%
! AAAACACATATTCAGTTCTT+GGG + Chr5:92740035-92740054 MsG0580029129.01.T01:intron 25.0%
! AAAATCGTGAGATTAGAAAT+AGG + Chr5:92737046-92737065 MsG0580029129.01.T01:intron 25.0%
! AAAATTCGTGAGAGAAAATA+GGG - Chr5:92736639-92736658 None:intergenic 25.0%
! AAAATTGCAAGCCTATAAAA+AGG - Chr5:92739968-92739987 None:intergenic 25.0%
! AAACTTGTCTATTACTAACT+AGG + Chr5:92738435-92738454 MsG0580029129.01.T01:intron 25.0%
! AAATCGTGAGATTAGAAATA+GGG + Chr5:92737047-92737066 MsG0580029129.01.T01:intron 25.0%
! AAATTTGAAAATTCTTGGAG+TGG - Chr5:92739145-92739164 None:intergenic 25.0%
! AACTATCATACTACATCAAA+AGG + Chr5:92739191-92739210 MsG0580029129.01.T01:intron 25.0%
! AATAACACTAAGGTTATGTT+TGG + Chr5:92733771-92733790 MsG0580029129.01.T01:five_prime_UTR 25.0%
! AATAAGCTGAAAACAACTTA+CGG + Chr5:92733924-92733943 MsG0580029129.01.T01:five_prime_UTR 25.0%
! AATGTTAAGGTAGACAATAA+TGG + Chr5:92738193-92738212 MsG0580029129.01.T01:intron 25.0%
! AATGTTTATTGTTTGATTGG+TGG - Chr5:92737809-92737828 None:intergenic 25.0%
! AATTTGCAAAGTGACAATTT+AGG + Chr5:92734181-92734200 MsG0580029129.01.T01:five_prime_UTR 25.0%
! AATTTGTGCATTCATTAAGA+TGG + Chr5:92734909-92734928 MsG0580029129.01.T01:intron 25.0%
! ACTTAACTCAATAAATGTGT+TGG + Chr5:92738402-92738421 MsG0580029129.01.T01:intron 25.0%
! AGAACCAAATTTGCATTTAA+GGG - Chr5:92737685-92737704 None:intergenic 25.0%
! ATAGATGAAGTAGAAAAAAG+TGG + Chr5:92739694-92739713 MsG0580029129.01.T01:intron 25.0%
! ATTAATAGTGCTTATGTTCT+TGG + Chr5:92733546-92733565 MsG0580029129.01.T01:five_prime_UTR 25.0%
! ATTTGCAAGGATAAATGTAA+GGG - Chr5:92737364-92737383 None:intergenic 25.0%
! CAAAGAAATAGAGCATATAT+AGG + Chr5:92738668-92738687 MsG0580029129.01.T01:intron 25.0%
! CATGTCAAATCATCAAAATT+CGG + Chr5:92736970-92736989 MsG0580029129.01.T01:intron 25.0%
! CTAGATAGATAATAACACTA+AGG + Chr5:92733761-92733780 MsG0580029129.01.T01:five_prime_UTR 25.0%
! CTTCAAATTGTATGAAAGAT+GGG + Chr5:92738163-92738182 MsG0580029129.01.T01:intron 25.0%
! CTTTCATACAATTTGAAGAA+TGG - Chr5:92738161-92738180 None:intergenic 25.0%
! GCATAAACACTTATTATTTG+AGG + Chr5:92733820-92733839 MsG0580029129.01.T01:five_prime_UTR 25.0%
! GTAAAGAAATCTTGATATCA+TGG - Chr5:92734103-92734122 None:intergenic 25.0%
! TAAAACACATATTCAGTTCT+TGG + Chr5:92740034-92740053 MsG0580029129.01.T01:intron 25.0%
! TACATCCATGATATCTATAT+CGG + Chr5:92739843-92739862 MsG0580029129.01.T01:intron 25.0%
! TAGAACCAAATTTGCATTTA+AGG - Chr5:92737686-92737705 None:intergenic 25.0%
! TCTCTTAAACTAAATAACGT+CGG - Chr5:92734332-92734351 None:intergenic 25.0%
! TCTTCAAATTGTATGAAAGA+TGG + Chr5:92738162-92738181 MsG0580029129.01.T01:intron 25.0%
! TGAAGAAAAAAAGAAGAAGA+GGG + Chr5:92733251-92733270 MsG0580029129.01.T01:five_prime_UTR 25.0%
! TGAAGATAATACAAGGAAAT+TGG + Chr5:92737840-92737859 MsG0580029129.01.T01:intron 25.0%
! TTATTTGGTTGTAACCTAAT+AGG + Chr5:92736334-92736353 MsG0580029129.01.T01:intron 25.0%
! TTGAAGAAAAAAAGAAGAAG+AGG + Chr5:92733250-92733269 MsG0580029129.01.T01:five_prime_UTR 25.0%
! TTTAAAAATGGACATAACTC+GGG - Chr5:92740251-92740270 None:intergenic 25.0%
! TTTGATGTAAAACCTTGTAT+AGG - Chr5:92736831-92736850 None:intergenic 25.0%
!! AACAAGTTGAAGATAATACA+AGG + Chr5:92737833-92737852 MsG0580029129.01.T01:intron 25.0%
!! AATTTGTTCTTTCGGTATTT+GGG + Chr5:92740087-92740106 MsG0580029129.01.T01:intron 25.0%
!! ACTCAATGAATTTGTTCTTT+CGG + Chr5:92740079-92740098 MsG0580029129.01.T01:intron 25.0%
!! ATTTTTCATTGTTGCCAAAA+TGG + Chr5:92740736-92740755 MsG0580029129.01.T01:intron 25.0%
!! CAAGGTTTTACATCAAATTT+TGG + Chr5:92736834-92736853 MsG0580029129.01.T01:intron 25.0%
!! CTGATGATTTTATTCCATTT+TGG - Chr5:92740753-92740772 None:intergenic 25.0%
!! GAACTTATCATTTAGAATCT+TGG + Chr5:92737242-92737261 MsG0580029129.01.T01:three_prime_UTR 25.0%
!! TACTGAATAAATCAGCTTTT+TGG + Chr5:92734120-92734139 MsG0580029129.01.T01:five_prime_UTR 25.0%
!! TGACGTTGATTGAAAAATAA+GGG + Chr5:92739593-92739612 MsG0580029129.01.T01:intron 25.0%
!! TTCCATATTCTTTTGACAAT+CGG + Chr5:92737556-92737575 MsG0580029129.01.T01:three_prime_UTR 25.0%
!! TTTTCTACCTACAATGAAAA+TGG - Chr5:92734589-92734608 None:intergenic 25.0%
!! TTTTTGCTGAATAATGTCAA+GGG + Chr5:92736485-92736504 MsG0580029129.01.T01:exon 25.0%
!!! AAATATTGGCTACATCATTT+TGG + Chr5:92734656-92734675 MsG0580029129.01.T01:CDS 25.0%
!!! AATTTTGATGATTTGACATG+TGG - Chr5:92736970-92736989 None:intergenic 25.0%
!!! ACAATGTAGTTGTTTGTTAT+TGG - Chr5:92733079-92733098 None:intergenic 25.0%
!!! ATATCAGACGTTTTGAAAAT+TGG - Chr5:92736697-92736716 None:intergenic 25.0%
!!! ATTTTGATGATTTGACATGT+GGG - Chr5:92736969-92736988 None:intergenic 25.0%
!!! CAATGTAGTTGTTTGTTATT+GGG - Chr5:92733078-92733097 None:intergenic 25.0%
!!! GACCATTTTTATTACTTCTT+AGG + Chr5:92737862-92737881 MsG0580029129.01.T01:intron 25.0%
!!! GGTAAAGATAAATTTTGGAA+AGG - Chr5:92735896-92735915 None:intergenic 25.0%
!!! TATCAGACGTTTTGAAAATT+GGG - Chr5:92736696-92736715 None:intergenic 25.0%
!!! TTGTCTATTTCAGCTTTATT+TGG + Chr5:92738330-92738349 MsG0580029129.01.T01:intron 25.0%
!!! TTTAATTTGTCCGCATATAT+AGG + Chr5:92739546-92739565 MsG0580029129.01.T01:intron 25.0%
!!! TTTTAAAAGCAGCAAAGTAT+TGG - Chr5:92736590-92736609 None:intergenic 25.0%
!!! TTTTTGTTGTTGTAGATTCA+TGG + Chr5:92733493-92733512 MsG0580029129.01.T01:intron 25.0%
!!! TTTTTTGAGTAATTTGCATC+TGG + Chr5:92735683-92735702 MsG0580029129.01.T01:intron 25.0%
!!! TTTTTTGCTGAATAATGTCA+AGG + Chr5:92736484-92736503 MsG0580029129.01.T01:exon 25.0%
AAAAAAATGGGTCACATCAT+CGG + Chr5:92740407-92740426 MsG0580029129.01.T01:intron 30.0%
AAATATATCCAGCAAGATCA+CGG - Chr5:92733710-92733729 None:intergenic 30.0%
AAATTCGTGAGAGAAAATAG+GGG - Chr5:92736638-92736657 None:intergenic 30.0%
AACCAAATTTGCATTTAAGG+GGG - Chr5:92737683-92737702 None:intergenic 30.0%
AAGAGTGACATTATATTCCT+TGG - Chr5:92735506-92735525 None:intergenic 30.0%
AATATCAAGTTCTTGAGTCA+GGG - Chr5:92734041-92734060 None:intergenic 30.0%
AATCGTGAGATTAGAAATAG+GGG + Chr5:92737048-92737067 MsG0580029129.01.T01:intron 30.0%
ACACTAATCTAGTCTCTTAT+TGG - Chr5:92738078-92738097 None:intergenic 30.0%
ACTTCAGATAACTAGTGTTA+TGG + Chr5:92735367-92735386 MsG0580029129.01.T01:intron 30.0%
AGGCTGTTTATGTTCTATTT+AGG + Chr5:92734992-92735011 MsG0580029129.01.T01:intron 30.0%
AGTATTTGGATACCAAACAT+GGG + Chr5:92737193-92737212 MsG0580029129.01.T01:three_prime_UTR 30.0%
ATACCAAACATGGGATTAAA+GGG + Chr5:92737202-92737221 MsG0580029129.01.T01:three_prime_UTR 30.0%
ATGCAACGCCATAAAAAAAT+GGG + Chr5:92740395-92740414 MsG0580029129.01.T01:intron 30.0%
ATGCCATACTATGTTTCAAT+GGG + Chr5:92733949-92733968 MsG0580029129.01.T01:five_prime_UTR 30.0%
ATGGTGATTATGTTATGTCA+TGG - Chr5:92734705-92734724 None:intergenic 30.0%
ATTATTATTGTGACTTCAGC+TGG - Chr5:92737907-92737926 None:intergenic 30.0%
ATTGCTATGCTTCATGAATT+TGG + Chr5:92733663-92733682 MsG0580029129.01.T01:five_prime_UTR 30.0%
CAAAACCGATATAGATATCA+TGG - Chr5:92739851-92739870 None:intergenic 30.0%
CAAAATTCGTGAGAGAAAAT+AGG - Chr5:92736640-92736659 None:intergenic 30.0%
CAAACTGAAAACTCTTATAC+AGG + Chr5:92739041-92739060 MsG0580029129.01.T01:intron 30.0%
CAAGGTTATATATTTCTTCC+TGG + Chr5:92736262-92736281 MsG0580029129.01.T01:intron 30.0%
CACTTGTTTACTTTCTTACT+TGG - Chr5:92738749-92738768 None:intergenic 30.0%
CTCAAACTTATGATCAAAAG+TGG + Chr5:92740292-92740311 MsG0580029129.01.T01:intron 30.0%
CTTATGTTCTTGGATATTCA+GGG + Chr5:92733556-92733575 MsG0580029129.01.T01:five_prime_UTR 30.0%
CTTCACTATTACTACTAACT+AGG + Chr5:92738226-92738245 MsG0580029129.01.T01:intron 30.0%
GAACCAAATTTGCATTTAAG+GGG - Chr5:92737684-92737703 None:intergenic 30.0%
GATCTTGCTGGATATATTTA+TGG + Chr5:92733711-92733730 MsG0580029129.01.T01:five_prime_UTR 30.0%
GATTTGCAAGGATAAATGTA+AGG - Chr5:92737365-92737384 None:intergenic 30.0%
GCAAAAAAGTAAACAAGTGA+AGG - Chr5:92738897-92738916 None:intergenic 30.0%
GCAAAGGTAACCAAATATAA+TGG - Chr5:92736431-92736450 None:intergenic 30.0%
GCTACTTATGGCATTTATAT+TGG - Chr5:92738281-92738300 None:intergenic 30.0%
GCTTTATGATTCTCAATCAT+TGG - Chr5:92736020-92736039 None:intergenic 30.0%
GGCAACAATGAAAAATGATA+AGG - Chr5:92740732-92740751 None:intergenic 30.0%
GGCTGTTTATGTTCTATTTA+GGG + Chr5:92734993-92735012 MsG0580029129.01.T01:intron 30.0%
GTAAGAAAGTAAACAAGTGA+AGG + Chr5:92738750-92738769 MsG0580029129.01.T01:intron 30.0%
TAACATCCATTCAAAAGCTT+TGG + Chr5:92737415-92737434 MsG0580029129.01.T01:three_prime_UTR 30.0%
TAAGTAGCAAAACAATGTGT+TGG + Chr5:92738293-92738312 MsG0580029129.01.T01:intron 30.0%
TAATATCAAGTTCTTGAGTC+AGG - Chr5:92734042-92734061 None:intergenic 30.0%
TATATTTGGTTACCTTTGCA+GGG + Chr5:92736432-92736451 MsG0580029129.01.T01:intron 30.0%
TATGCAACGCCATAAAAAAA+TGG + Chr5:92740394-92740413 MsG0580029129.01.T01:intron 30.0%
TATGCCATACTATGTTTCAA+TGG + Chr5:92733948-92733967 MsG0580029129.01.T01:five_prime_UTR 30.0%
TATGTTTATATTAAGGGGTC+AGG - Chr5:92738133-92738152 None:intergenic 30.0%
TCATCAACAACATAAACAAG+TGG + Chr5:92733126-92733145 MsG0580029129.01.T01:five_prime_UTR 30.0%
TCTGAATAGTATCAAGAATC+TGG + Chr5:92734483-92734502 MsG0580029129.01.T01:five_prime_UTR 30.0%
TGAAAGATGAGGAATACAAA+TGG - Chr5:92735082-92735101 None:intergenic 30.0%
TGAAGAACTTTCAACCAATA+TGG - Chr5:92739295-92739314 None:intergenic 30.0%
TGTGTGTGTAACAAATATAC+AGG - Chr5:92737653-92737672 None:intergenic 30.0%
TTATATTTGGTTACCTTTGC+AGG + Chr5:92736431-92736450 MsG0580029129.01.T01:intron 30.0%
TTATTATTGTGACTTCAGCT+GGG - Chr5:92737906-92737925 None:intergenic 30.0%
TTCAACTATAACCAACACAT+TGG - Chr5:92738549-92738568 None:intergenic 30.0%
TTCATCATGTTCTTTACAAC+TGG - Chr5:92736374-92736393 None:intergenic 30.0%
TTTACAATTCTAAGCAACGT+GGG - Chr5:92738593-92738612 None:intergenic 30.0%
TTTGCAAGGATAAATGTAAG+GGG - Chr5:92737363-92737382 None:intergenic 30.0%
TTTGCTACAAGCAATGTATT+TGG + Chr5:92737726-92737745 MsG0580029129.01.T01:intron 30.0%
! AATTCGTGGATTTAAAACTG+AGG - Chr5:92736667-92736686 None:intergenic 30.0%
! ATGTCACTCTTTTGTGATTT+TGG + Chr5:92735515-92735534 MsG0580029129.01.T01:intron 30.0%
! ATTCGTGGATTTAAAACTGA+GGG - Chr5:92736666-92736685 None:intergenic 30.0%
! ATTTTCCCCATCTAAACTTT+TGG + Chr5:92736715-92736734 MsG0580029129.01.T01:intron 30.0%
! CTATATTTTCAGTTTACCGT+TGG + Chr5:92736398-92736417 MsG0580029129.01.T01:intron 30.0%
! CTATTTTCTCTCACGAATTT+TGG + Chr5:92736638-92736657 MsG0580029129.01.T01:intron 30.0%
! CTGAAATAGACAAGTTTGTT+GGG - Chr5:92738516-92738535 None:intergenic 30.0%
! CTGTATAAGAGTTTTCAGTT+TGG - Chr5:92739043-92739062 None:intergenic 30.0%
! GAATTTGTTCTTTCGGTATT+TGG + Chr5:92740086-92740105 MsG0580029129.01.T01:intron 30.0%
! GTCTTCGAATATATCACTTT+TGG - Chr5:92739795-92739814 None:intergenic 30.0%
! GTGACGTTGATTGAAAAATA+AGG + Chr5:92739592-92739611 MsG0580029129.01.T01:intron 30.0%
! GTTTGTTCTTATTTGTCACT+AGG - Chr5:92737395-92737414 None:intergenic 30.0%
! TATTTTCCCACTCATTAAGT+TGG - Chr5:92739495-92739514 None:intergenic 30.0%
! TCATTTAGAATCTTGGTAAG+AGG + Chr5:92737249-92737268 MsG0580029129.01.T01:three_prime_UTR 30.0%
! TGCGAAAACATGATAAGTTT+TGG - Chr5:92737519-92737538 None:intergenic 30.0%
! TGTCTAAAACATACAATTCG+AGG + Chr5:92734386-92734405 MsG0580029129.01.T01:five_prime_UTR 30.0%
! TGTGTTTTACTTAACGTACA+AGG - Chr5:92740023-92740042 None:intergenic 30.0%
! TTATCCTCAAATCAGCTTTT+TGG - Chr5:92740441-92740460 None:intergenic 30.0%
! TTATCTTTACCTTGTTGTGA+AGG + Chr5:92735905-92735924 MsG0580029129.01.T01:intron 30.0%
! TTCATTTTCTATGCTTACCA+AGG + Chr5:92735486-92735505 MsG0580029129.01.T01:intron 30.0%
! TTTTACTTAACGTACAAGGT+AGG - Chr5:92740019-92740038 None:intergenic 30.0%
! TTTTCCCCATCTAAACTTTT+GGG + Chr5:92736716-92736735 MsG0580029129.01.T01:intron 30.0%
!! ACACATTGTTTTGCTACTTA+TGG - Chr5:92738293-92738312 None:intergenic 30.0%
!! AGGTACTGAATTGTATTCTA+AGG + Chr5:92734277-92734296 MsG0580029129.01.T01:five_prime_UTR 30.0%
!! ATTTTACTTGTTGATGTTCC+TGG - Chr5:92736164-92736183 None:intergenic 30.0%
!! CTTTTGGTTAAATTGTCACA+CGG - Chr5:92739779-92739798 None:intergenic 30.0%
!! GTTTGTTATTGGGTTATCAT+GGG - Chr5:92733068-92733087 None:intergenic 30.0%
!! TGTTTGTTATTGGGTTATCA+TGG - Chr5:92733069-92733088 None:intergenic 30.0%
!!! ATCAGACGTTTTGAAAATTG+GGG - Chr5:92736695-92736714 None:intergenic 30.0%
!!! CACTTGTTTACTTTTTTGCT+TGG + Chr5:92738898-92738917 MsG0580029129.01.T01:intron 30.0%
!!! CAGTTTTAAATCCACGAATT+TGG + Chr5:92736667-92736686 MsG0580029129.01.T01:intron 30.0%
!!! TGATGTGACCCATTTTTTTA+TGG - Chr5:92740406-92740425 None:intergenic 30.0%
!!! TTTTTTTTAGAGAAGGACCA+AGG + Chr5:92738951-92738970 MsG0580029129.01.T01:intron 30.0%
AAAACTCTTATACAGGTGGT+TGG + Chr5:92739048-92739067 MsG0580029129.01.T01:intron 35.0%
AAACTCTTATACAGGTGGTT+GGG + Chr5:92739049-92739068 MsG0580029129.01.T01:intron 35.0%
AACAATCGGCGAGAAAATAA+AGG - Chr5:92739447-92739466 None:intergenic 35.0%
AAGCAGTATATAGTTCGACT+CGG + Chr5:92735938-92735957 MsG0580029129.01.T01:intron 35.0%
AATGATAAGGATTGTGCTCT+TGG - Chr5:92740719-92740738 None:intergenic 35.0%
AATTCGTGAGAGAAAATAGG+GGG - Chr5:92736637-92736656 None:intergenic 35.0%
ACATCGTTGTTATCAACATC+AGG - Chr5:92733345-92733364 None:intergenic 35.0%
ACCAAATTTGCATTTAAGGG+GGG - Chr5:92737682-92737701 None:intergenic 35.0%
ACTGAAAACTCTTATACAGG+TGG + Chr5:92739044-92739063 MsG0580029129.01.T01:intron 35.0%
AGATACTTATGTGACATCTG+AGG + Chr5:92736769-92736788 MsG0580029129.01.T01:intron 35.0%
AGCATTTCAAGAAACAACCT+TGG - Chr5:92738971-92738990 None:intergenic 35.0%
AGTGAGAATTCACCTATACA+AGG + Chr5:92736816-92736835 MsG0580029129.01.T01:intron 35.0%
ATATAATGGCAGAACTCCAA+CGG - Chr5:92736417-92736436 None:intergenic 35.0%
ATCAACCCCAAAAGTTTAGA+TGG - Chr5:92736725-92736744 None:intergenic 35.0%
ATCGTGAGATTAGAAATAGG+GGG + Chr5:92737049-92737068 MsG0580029129.01.T01:intron 35.0%
ATCTTTCAGCTCTTGGAATT+TGG + Chr5:92735094-92735113 MsG0580029129.01.T01:CDS 35.0%
ATGCTTGGTTAATTCAGTGT+GGG + Chr5:92736070-92736089 MsG0580029129.01.T01:intron 35.0%
ATTGAGTGCCAAAGAAGAAA+TGG - Chr5:92740066-92740085 None:intergenic 35.0%
ATTGATGCCAACTTAATGAG+TGG + Chr5:92739485-92739504 MsG0580029129.01.T01:intron 35.0%
CACGTTGCTTAGAATTGTAA+AGG + Chr5:92738592-92738611 MsG0580029129.01.T01:intron 35.0%
CTATGCTTCATGAATTTGGT+GGG + Chr5:92733667-92733686 MsG0580029129.01.T01:five_prime_UTR 35.0%
CTCCGATTGTCAAAAGAATA+TGG - Chr5:92737561-92737580 None:intergenic 35.0%
CTTGTACTGTCACTAAAAGA+TGG + Chr5:92735162-92735181 MsG0580029129.01.T01:CDS 35.0%
CTTTACAATTCTAAGCAACG+TGG - Chr5:92738594-92738613 None:intergenic 35.0%
GACAAAATCACACACACAAA+CGG + Chr5:92739888-92739907 MsG0580029129.01.T01:intron 35.0%
GAGTATTTGGATACCAAACA+TGG + Chr5:92737192-92737211 MsG0580029129.01.T01:three_prime_UTR 35.0%
GATACCAAACATGGGATTAA+AGG + Chr5:92737201-92737220 MsG0580029129.01.T01:three_prime_UTR 35.0%
GATCCCATTGAAACATAGTA+TGG - Chr5:92733955-92733974 None:intergenic 35.0%
GATGAAGTAGAAAAAAGTGG+AGG + Chr5:92739697-92739716 MsG0580029129.01.T01:intron 35.0%
GATGATGTAACCTAATCAGA+GGG + Chr5:92739719-92739738 MsG0580029129.01.T01:intron 35.0%
GATGGGAGACAAAAATGTTA+AGG + Chr5:92738180-92738199 MsG0580029129.01.T01:intron 35.0%
GCGGACAAATTAAAGTTTCA+TGG - Chr5:92739540-92739559 None:intergenic 35.0%
GCTGAAATAGACAAGTTTGT+TGG - Chr5:92738517-92738536 None:intergenic 35.0%
GCTTAGAATTGTAAAGGAAG+AGG + Chr5:92738598-92738617 MsG0580029129.01.T01:intron 35.0%
GCTTATGTTCTTGGATATTC+AGG + Chr5:92733555-92733574 MsG0580029129.01.T01:five_prime_UTR 35.0%
GTATCCAAATACTCGTACAT+CGG - Chr5:92737186-92737205 None:intergenic 35.0%
TATGCTTGGTTAATTCAGTG+TGG + Chr5:92736069-92736088 MsG0580029129.01.T01:intron 35.0%
TCAACCCCAAAAGTTTAGAT+GGG - Chr5:92736724-92736743 None:intergenic 35.0%
TCGAGATTATAATAAGTCCC+CGG + Chr5:92740774-92740793 MsG0580029129.01.T01:intron 35.0%
TGAATCCAAACAAAAACTCC+AGG - Chr5:92736283-92736302 None:intergenic 35.0%
TGAATGCACAAATTGACATC+AGG - Chr5:92734903-92734922 None:intergenic 35.0%
TGAGATACAGGTATGATTCA+AGG + Chr5:92736244-92736263 MsG0580029129.01.T01:intron 35.0%
TGAGTGAATGACCAGAAAAT+TGG - Chr5:92740276-92740295 None:intergenic 35.0%
TGCAATGACTGATTGAAGAA+AGG - Chr5:92736546-92736565 None:intergenic 35.0%
TGGAGTTCTGCCATTATATT+TGG + Chr5:92736418-92736437 MsG0580029129.01.T01:intron 35.0%
TGTAGATTCATGGTTTCAAG+TGG + Chr5:92733503-92733522 MsG0580029129.01.T01:intron 35.0%
TTGAATCATACCTGTATCTC+AGG - Chr5:92736245-92736264 None:intergenic 35.0%
TTGATGCCAACTTAATGAGT+GGG + Chr5:92739486-92739505 MsG0580029129.01.T01:intron 35.0%
! ATTGTTTTCGTAAGCTATCC+TGG + Chr5:92733889-92733908 MsG0580029129.01.T01:five_prime_UTR 35.0%
! ATTTTCCCCATTCACCATTT+TGG - Chr5:92737076-92737095 None:intergenic 35.0%
! CACAAGACTGTTTCTTAAAG+TGG - Chr5:92738712-92738731 None:intergenic 35.0%
! CACTTTAAGAAACAGTCTTG+TGG + Chr5:92738710-92738729 MsG0580029129.01.T01:intron 35.0%
! CTAGGTACATATGATTTGCA+AGG - Chr5:92737377-92737396 None:intergenic 35.0%
! CTTGGCATATGCCTTTTTAT+AGG + Chr5:92739954-92739973 MsG0580029129.01.T01:intron 35.0%
! GAGTTTTCACTTCAAAGCAA+TGG + Chr5:92739931-92739950 MsG0580029129.01.T01:intron 35.0%
! GTAGATTCATGGTTTCAAGT+GGG + Chr5:92733504-92733523 MsG0580029129.01.T01:intron 35.0%
! GTCTGTTCCATTTTCATTGT+AGG + Chr5:92734579-92734598 MsG0580029129.01.T01:five_prime_UTR 35.0%
! TAGATTCATGGTTTCAAGTG+GGG + Chr5:92733505-92733524 MsG0580029129.01.T01:intron 35.0%
! TTCGTGGATTTAAAACTGAG+GGG - Chr5:92736665-92736684 None:intergenic 35.0%
! TTCTTCCTGGAGTTTTTGTT+TGG + Chr5:92736275-92736294 MsG0580029129.01.T01:intron 35.0%
! TTTAGAATCTTGGTAAGAGG+TGG + Chr5:92737252-92737271 MsG0580029129.01.T01:three_prime_UTR 35.0%
! TTTCCCCATCTAAACTTTTG+GGG + Chr5:92736717-92736736 MsG0580029129.01.T01:intron 35.0%
!! AAAGCAGCAAAGTATTGGTT+TGG - Chr5:92736585-92736604 None:intergenic 35.0%
!! AAGGAACACAATTTAGGTTG+TGG - Chr5:92739428-92739447 None:intergenic 35.0%
!! AATTAATTACAGAGGCACCA+GGG - Chr5:92735298-92735317 None:intergenic 35.0%
!! CAATTGCTTTTCACTATGCT+TGG + Chr5:92736055-92736074 MsG0580029129.01.T01:intron 35.0%
!! GCTTTAAAATGCCAATGTGT+TGG + Chr5:92738535-92738554 MsG0580029129.01.T01:intron 35.0%
!! GTTGTGGAATTTTCAAGACA+AGG - Chr5:92739412-92739431 None:intergenic 35.0%
!! TTAAGTTGGCATCAATGAGA+TGG - Chr5:92739481-92739500 None:intergenic 35.0%
!! TTATTACTTGTTGATGACCC+CGG - Chr5:92740796-92740815 None:intergenic 35.0%
!!! TCAGACGTTTTGAAAATTGG+GGG - Chr5:92736694-92736713 None:intergenic 35.0%
AACTCTTATACAGGTGGTTG+GGG + Chr5:92739050-92739069 MsG0580029129.01.T01:intron 40.0%
AAGTCCGATGTACGAGTATT+TGG + Chr5:92737179-92737198 MsG0580029129.01.T01:three_prime_UTR 40.0%
AATAGCCTCTCTTATGCTTC+TGG + Chr5:92737145-92737164 MsG0580029129.01.T01:intron 40.0%
AATCAACACCTCGGTAATCA+AGG + Chr5:92739372-92739391 MsG0580029129.01.T01:intron 40.0%
ACAAAATGACGTGACAAGCA+AGG - Chr5:92734529-92734548 None:intergenic 40.0%
ACCCCCCTTAAATGCAAATT+TGG + Chr5:92737678-92737697 MsG0580029129.01.T01:intron 40.0%
ACGACTTGTATTCTTATCCC+TGG + Chr5:92739016-92739035 MsG0580029129.01.T01:intron 40.0%
ACTAACCTGCTAAGGATTCT+GGG + Chr5:92734820-92734839 MsG0580029129.01.T01:intron 40.0%
ACTCCCTTTAATCCCATGTT+TGG - Chr5:92737208-92737227 None:intergenic 40.0%
AGCATGCTGTGAGATTATGT+CGG - Chr5:92739322-92739341 None:intergenic 40.0%
ATAATGTCAAGGGACCAATC+TGG + Chr5:92736495-92736514 MsG0580029129.01.T01:three_prime_UTR 40.0%
ATGTTCAGCCTAGAGATAGA+GGG - Chr5:92735451-92735470 None:intergenic 40.0%
ATTAGATACCGTGATCTTGC+TGG + Chr5:92733699-92733718 MsG0580029129.01.T01:five_prime_UTR 40.0%
ATTCCAAGAGCTGAAAGATG+AGG - Chr5:92735093-92735112 None:intergenic 40.0%
ATTCCTCATCTTTCAGCTCT+TGG + Chr5:92735087-92735106 MsG0580029129.01.T01:CDS 40.0%
CAACCCCAAAAGTTTAGATG+GGG - Chr5:92736723-92736742 None:intergenic 40.0%
CAGCTGAAATGCTACATACA+AGG - Chr5:92735599-92735618 None:intergenic 40.0%
CCAGCTATGGCAATAAAATG+TGG - Chr5:92735039-92735058 None:intergenic 40.0%
CGAGATTATAATAAGTCCCC+GGG + Chr5:92740775-92740794 MsG0580029129.01.T01:intron 40.0%
CTCATGAAATCTCCAAGGAA+TGG - Chr5:92737315-92737334 None:intergenic 40.0%
CTTATCGTGCAACTCCATAT+TGG + Chr5:92739278-92739297 MsG0580029129.01.T01:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG - Chr5:92733910-92733929 None:intergenic 40.0%
CTTGAAGTGCAAGACAATCA+AGG + Chr5:92738837-92738856 MsG0580029129.01.T01:intron 40.0%
CTTGATTGTCTTGCACTTCA+AGG - Chr5:92738839-92738858 None:intergenic 40.0%
CTTTGGCATGGATCAACATT+TGG + Chr5:92737432-92737451 MsG0580029129.01.T01:three_prime_UTR 40.0%
GAACGTTTCTGTAGATGAAG+AGG + Chr5:92733302-92733321 MsG0580029129.01.T01:five_prime_UTR 40.0%
GAGATTATAATAAGTCCCCG+GGG + Chr5:92740776-92740795 MsG0580029129.01.T01:intron 40.0%
GCTAGAGATTATAGTGTTCC+AGG + Chr5:92736143-92736162 MsG0580029129.01.T01:CDS 40.0%
GCTATGCTTCATGAATTTGG+TGG + Chr5:92733666-92733685 MsG0580029129.01.T01:five_prime_UTR 40.0%
GGAACACTATAATCTCTAGC+TGG - Chr5:92736143-92736162 None:intergenic 40.0%
GGATGATGTAACCTAATCAG+AGG + Chr5:92739718-92739737 MsG0580029129.01.T01:intron 40.0%
GTGCTATGACAATATATGCG+AGG - Chr5:92735143-92735162 None:intergenic 40.0%
GTTTATATTAAGGGGTCAGG+CGG - Chr5:92738130-92738149 None:intergenic 40.0%
TAATGTCAAGGGACCAATCT+GGG + Chr5:92736496-92736515 MsG0580029129.01.T01:three_prime_UTR 40.0%
TAGAAATAGGGGGACCAAAA+TGG + Chr5:92737059-92737078 MsG0580029129.01.T01:intron 40.0%
TCATCATTCCCTCTATCTCT+AGG + Chr5:92735440-92735459 MsG0580029129.01.T01:intron 40.0%
TCCCATACTAATCAACACCT+CGG + Chr5:92739363-92739382 MsG0580029129.01.T01:intron 40.0%
TCGGTCTCAAAATGTGTAAG+TGG + Chr5:92736989-92737008 MsG0580029129.01.T01:intron 40.0%
TGACATGTGGGATGTTTATG+TGG - Chr5:92736957-92736976 None:intergenic 40.0%
TGATACAACCTTGATTACCG+AGG - Chr5:92739383-92739402 None:intergenic 40.0%
TGGATATTCAGGGACCATTA+TGG + Chr5:92733566-92733585 MsG0580029129.01.T01:five_prime_UTR 40.0%
TTCACTTCAAAGCAATGGCT+TGG + Chr5:92739936-92739955 MsG0580029129.01.T01:intron 40.0%
TTCTGAACTAACTCATCTCG+AGG - Chr5:92737779-92737798 None:intergenic 40.0%
TTGAGGGTTTCATCTCAAGA+GGG - Chr5:92740837-92740856 None:intergenic 40.0%
TTGTTACAAGATGCACCACT+CGG - Chr5:92738651-92738670 None:intergenic 40.0%
TTTCGGTATTTGGGCATTAG+TGG + Chr5:92740096-92740115 MsG0580029129.01.T01:intron 40.0%
TTTGAGGGTTTCATCTCAAG+AGG - Chr5:92740838-92740857 None:intergenic 40.0%
! AAGAGTTTTCAGTTTGGTCC+AGG - Chr5:92739037-92739056 None:intergenic 40.0%
! AGAGTTTTCAGTTTGGTCCA+GGG - Chr5:92739036-92739055 None:intergenic 40.0%
! ATCTACCAGAAGCATAAGAG+AGG - Chr5:92737153-92737172 None:intergenic 40.0%
! CCACATTTTATTGCCATAGC+TGG + Chr5:92735036-92735055 MsG0580029129.01.T01:CDS 40.0%
! GAAAAGCATATTGCCTCACA+TGG + Chr5:92734604-92734623 MsG0580029129.01.T01:five_prime_UTR 40.0%
! TCCAAACTTTTATCAGCGAG+CGG + Chr5:92740639-92740658 MsG0580029129.01.T01:intron 40.0%
! TCCATGCCAAAGCTTTTGAA+TGG - Chr5:92737424-92737443 None:intergenic 40.0%
! TCCATTCAAAAGCTTTGGCA+TGG + Chr5:92737420-92737439 MsG0580029129.01.T01:three_prime_UTR 40.0%
! TCTTACTTGGCAAGTCTTGT+AGG - Chr5:92738736-92738755 None:intergenic 40.0%
! TTACCTTGTTGTGAAGGCTA+GGG + Chr5:92735911-92735930 MsG0580029129.01.T01:intron 40.0%
! TTTACCTTGTTGTGAAGGCT+AGG + Chr5:92735910-92735929 MsG0580029129.01.T01:intron 40.0%
!! ACCGAGGTGTTGATTAGTAT+GGG - Chr5:92739367-92739386 None:intergenic 40.0%
!! AGGTTGTTTCTTGAAGTGCA+AGG - Chr5:92738790-92738809 None:intergenic 40.0%
!! ATACTTGGTTTTCTGTTCCC+TGG + Chr5:92735278-92735297 MsG0580029129.01.T01:intron 40.0%
!! ATATAGTTCGACTCGGCTAT+CGG + Chr5:92735945-92735964 MsG0580029129.01.T01:intron 40.0%
!! ATTGGCTACATCATTTTGGC+TGG + Chr5:92734660-92734679 MsG0580029129.01.T01:CDS 40.0%
!! CAATTAATTACAGAGGCACC+AGG - Chr5:92735299-92735318 None:intergenic 40.0%
!! GAGTCCAAAAAGCTGATTTG+AGG + Chr5:92740434-92740453 MsG0580029129.01.T01:intron 40.0%
!! GTCTCTTATTGGTTTGTTGC+AGG - Chr5:92738067-92738086 None:intergenic 40.0%
!! TACCGAGGTGTTGATTAGTA+TGG - Chr5:92739368-92739387 None:intergenic 40.0%
!! TATTACTTGTTGATGACCCC+GGG - Chr5:92740795-92740814 None:intergenic 40.0%
!! TTGTGATTTTGGTCTTCTGC+TGG + Chr5:92735526-92735545 MsG0580029129.01.T01:intron 40.0%
!! TTGTTGATTTGTCGTCATGC+AGG + Chr5:92734972-92734991 MsG0580029129.01.T01:intron 40.0%
!! TTTTGCTTGGCAAGTCTTGT+AGG + Chr5:92738911-92738930 MsG0580029129.01.T01:intron 40.0%
!!! TTTTGTTGTTATTGCCGCAG+TGG + Chr5:92739866-92739885 MsG0580029129.01.T01:intron 40.0%
AAATTGGGGGACCAAATTCG+TGG - Chr5:92736681-92736700 None:intergenic 45.0%
AAGCTATCCTGGAGAGCTTA+TGG + Chr5:92733900-92733919 MsG0580029129.01.T01:five_prime_UTR 45.0%
ACAAGCTTAGTGATTCCGAG+TGG + Chr5:92738633-92738652 MsG0580029129.01.T01:intron 45.0%
ACACACACAAACGGAAAGAG+AGG + Chr5:92739897-92739916 MsG0580029129.01.T01:intron 45.0%
ACCAATCTGGGTGAAAGTTG+TGG + Chr5:92736508-92736527 MsG0580029129.01.T01:three_prime_UTR 45.0%
ACTACTCGTTCAGAGAAGTC+AGG - Chr5:92735988-92736007 None:intergenic 45.0%
ACTGCACATCAAATCAGCAC+TGG + Chr5:92733378-92733397 MsG0580029129.01.T01:five_prime_UTR 45.0%
AGGAATGCTTCCTGAGATAC+AGG + Chr5:92736232-92736251 MsG0580029129.01.T01:CDS 45.0%
AGGGACCATTATGGTTCCTT+TGG + Chr5:92733575-92733594 MsG0580029129.01.T01:five_prime_UTR 45.0%
AGTTGCGGCAATAGACATGA+TGG - Chr5:92737465-92737484 None:intergenic 45.0%
ATGCTGTGAGATTATGTCGG+TGG - Chr5:92739319-92739338 None:intergenic 45.0%
ATGTGCTTATAGCTCCTGTG+AGG - Chr5:92737338-92737357 None:intergenic 45.0%
CCAACCCAAAGGAACCATAA+TGG - Chr5:92733583-92733602 None:intergenic 45.0%
CCATTATGGTTCCTTTGGGT+TGG + Chr5:92733580-92733599 MsG0580029129.01.T01:five_prime_UTR 45.0%
CTAATCAGAGGGAGCAAGAA+CGG + Chr5:92739730-92739749 MsG0580029129.01.T01:intron 45.0%
CTCGTGTTCGCATACAATAC+AGG + Chr5:92736212-92736231 MsG0580029129.01.T01:CDS 45.0%
CTTGAAGTCCAAGACAAGCA+AGG + Chr5:92738866-92738885 MsG0580029129.01.T01:intron 45.0%
GACTAACCTGCTAAGGATTC+TGG + Chr5:92734819-92734838 MsG0580029129.01.T01:intron 45.0%
GATGTTCAGCCTAGAGATAG+AGG - Chr5:92735452-92735471 None:intergenic 45.0%
GGATGTTTATGTGGCAACTC+AGG - Chr5:92736948-92736967 None:intergenic 45.0%
GGGACCATTATGGTTCCTTT+GGG + Chr5:92733576-92733595 MsG0580029129.01.T01:five_prime_UTR 45.0%
GGGTGAAGCCATTTCTTCTT+TGG + Chr5:92740055-92740074 MsG0580029129.01.T01:intron 45.0%
GGTTGTAGCAAAATTCACGC+TGG + Chr5:92733272-92733291 MsG0580029129.01.T01:five_prime_UTR 45.0%
GTTAAATTGTCACACGGCAC+CGG - Chr5:92739773-92739792 None:intergenic 45.0%
GTTTCTCGACTAACCTGCTA+AGG + Chr5:92734812-92734831 MsG0580029129.01.T01:intron 45.0%
TATTGTGACTTCAGCTGGGT+GGG - Chr5:92737902-92737921 None:intergenic 45.0%
TCAATGAGATGGCCATTGCA+TGG - Chr5:92739470-92739489 None:intergenic 45.0%
TCAGCTCTTGGAATTTGGCT+CGG + Chr5:92735099-92735118 MsG0580029129.01.T01:CDS 45.0%
TCCGCTCGCTGATAAAAGTT+TGG - Chr5:92740643-92740662 None:intergenic 45.0%
TGAGGCTCATGAAATCTCCA+AGG - Chr5:92737320-92737339 None:intergenic 45.0%
TGGCCATTGCATGGAACAAT+CGG - Chr5:92739461-92739480 None:intergenic 45.0%
TGTAGCAAAATTCACGCTGG+CGG + Chr5:92733275-92733294 MsG0580029129.01.T01:five_prime_UTR 45.0%
TTATTGTGACTTCAGCTGGG+TGG - Chr5:92737903-92737922 None:intergenic 45.0%
TTGTCTGATCGTCGCCTATT+AGG - Chr5:92736351-92736370 None:intergenic 45.0%
! ACAAGTCGTTAGTCTGCTCT+GGG - Chr5:92739005-92739024 None:intergenic 45.0%
! CTGATTTGATGTGCAGTGTC+TGG - Chr5:92733375-92733394 None:intergenic 45.0%
! GTGTGTGATTTTGTCCACTG+CGG - Chr5:92739883-92739902 None:intergenic 45.0%
! TACAAGTCGTTAGTCTGCTC+TGG - Chr5:92739006-92739025 None:intergenic 45.0%
! TTTGGCTGGTTCAGCTTTGA+AGG + Chr5:92734674-92734693 MsG0580029129.01.T01:CDS 45.0%
!! ATGGTTCCTTTGGGTTGGAT+AGG + Chr5:92733585-92733604 MsG0580029129.01.T01:five_prime_UTR 45.0%
!! ATTACTTGTTGATGACCCCG+GGG - Chr5:92740794-92740813 None:intergenic 45.0%
!! TATAGTTCGACTCGGCTATC+GGG + Chr5:92735946-92735965 MsG0580029129.01.T01:intron 45.0%
!! TATTGGTTTGTTGCAGGTGC+TGG - Chr5:92738061-92738080 None:intergenic 45.0%
ACACCACCTATCCAACCCAA+AGG - Chr5:92733594-92733613 None:intergenic 50.0%
ACGGAAAGAGAGGAGTGATC+AGG + Chr5:92739907-92739926 MsG0580029129.01.T01:intron 50.0%
AGGAACCACCTTGCTTGTCT+TGG - Chr5:92738877-92738896 None:intergenic 50.0%
AGGGGGACCAAAATGGTGAA+TGG + Chr5:92737066-92737085 MsG0580029129.01.T01:intron 50.0%
ATAAGCCCAGTACCCTGCAA+AGG - Chr5:92736447-92736466 None:intergenic 50.0%
CAAGACCCAGAATCCTTAGC+AGG - Chr5:92734828-92734847 None:intergenic 50.0%
CATACTGCAGAGTCCATGTG+AGG - Chr5:92734620-92734639 None:intergenic 50.0%
CGTTCTTGCTCCCTCTGATT+AGG - Chr5:92739732-92739751 None:intergenic 50.0%
CTCGAAGTGCAAGACAAGCA+AGG - Chr5:92738810-92738829 None:intergenic 50.0%
CTTGAAGTGCAAGGCAAGCA+AGG - Chr5:92738781-92738800 None:intergenic 50.0%
GAAGTCCAAGACAAGCAAGG+TGG + Chr5:92738869-92738888 MsG0580029129.01.T01:intron 50.0%
GCCACAACTTTCACCCAGAT+TGG - Chr5:92736512-92736531 None:intergenic 50.0%
GGAGATTTCATGAGCCTCAC+AGG + Chr5:92737321-92737340 MsG0580029129.01.T01:three_prime_UTR 50.0%
GGGGACCAAAATGGTGAATG+GGG + Chr5:92737068-92737087 MsG0580029129.01.T01:intron 50.0%
GGGGGACCAAAATGGTGAAT+GGG + Chr5:92737067-92737086 MsG0580029129.01.T01:intron 50.0%
GGTCTTCTGCTGGTATTCAG+AGG + Chr5:92735536-92735555 MsG0580029129.01.T01:intron 50.0%
TCAGCTCTACTGCCATTCCT+TGG + Chr5:92737300-92737319 MsG0580029129.01.T01:three_prime_UTR 50.0%
TGCACACACAAGTCCAGCTA+TGG - Chr5:92735052-92735071 None:intergenic 50.0%
TGGTTACCTTTGCAGGGTAC+TGG + Chr5:92736438-92736457 MsG0580029129.01.T01:intron 50.0%
! GGCAAGTCTTGTAGGACACA+AGG + Chr5:92738919-92738938 MsG0580029129.01.T01:intron 50.0%
! GGTTACCTTTGCAGGGTACT+GGG + Chr5:92736439-92736458 MsG0580029129.01.T01:intron 50.0%
! GTGGGGTTTGTGTTGACAAC+AGG + Chr5:92733522-92733541 MsG0580029129.01.T01:five_prime_UTR 50.0%
! TCGCCGATTGTTCCATGCAA+TGG + Chr5:92739455-92739474 MsG0580029129.01.T01:intron 50.0%
!! GAAGTCAGGAGAGTGCTGAT+AGG - Chr5:92735974-92735993 None:intergenic 50.0%
!! GGTTGGATAGGTGGTGTTGT+TGG + Chr5:92733597-92733616 MsG0580029129.01.T01:five_prime_UTR 50.0%
!! GTTCCTTTGGGTTGGATAGG+TGG + Chr5:92733588-92733607 MsG0580029129.01.T01:five_prime_UTR 50.0%
!! TTTGCAGGGTACTGGGCTTA+TGG + Chr5:92736446-92736465 MsG0580029129.01.T01:intron 50.0%
AGCAAGAACGGAACGGTGGA+TGG + Chr5:92739742-92739761 MsG0580029129.01.T01:intron 55.0%
CAGAGGGAGCAAGAACGGAA+CGG + Chr5:92739735-92739754 MsG0580029129.01.T01:intron 55.0%
GGAACGGTGGATGGTTGTTC+CGG + Chr5:92739751-92739770 MsG0580029129.01.T01:intron 55.0%
TATTAAGGGGTCAGGCGGTG+CGG - Chr5:92738125-92738144 None:intergenic 55.0%
! GAGCCCTAGCCTTCACAACA+AGG - Chr5:92735917-92735936 None:intergenic 55.0%
AGGGAGCAAGAACGGAACGG+TGG + Chr5:92739738-92739757 MsG0580029129.01.T01:intron 60.0%
CCGCAACTATTGCAGCGCTG+CGG + Chr5:92737477-92737496 MsG0580029129.01.T01:three_prime_UTR 60.0%
CCGCAGCGCTGCAATAGTTG+CGG - Chr5:92737480-92737499 None:intergenic 60.0%
! CGTTAGTCTGCTCTGGGCTC+TGG - Chr5:92738999-92739018 None:intergenic 60.0%
GGGTCAGGCGGTGCGGTTTA+AGG - Chr5:92738118-92738137 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 92733045 92740905 92733045 ID=MsG0580029129.01;Name=MsG0580029129.01
Chr5 mRNA 92733045 92740905 92733045 ID=MsG0580029129.01.T01;Parent=MsG0580029129.01;Name=MsG0580029129.01.T01;_AED=0.24;_eAED=0.24;_QI=1498|1|1|1|0.5|0.42|7|535|133
Chr5 exon 92736453 92736571 92736453 ID=MsG0580029129.01.T01:exon:26497;Parent=MsG0580029129.01.T01
Chr5 exon 92737171 92737579 92737171 ID=MsG0580029129.01.T01:exon:26498;Parent=MsG0580029129.01.T01
Chr5 exon 92740857 92740905 92740857 ID=MsG0580029129.01.T01:exon:26499;Parent=MsG0580029129.01.T01
Chr5 five_prime_UTR 92733045 92733399 92733045 ID=MsG0580029129.01.T01:five_prime_utr;Parent=MsG0580029129.01.T01
Chr5 five_prime_UTR 92733508 92734650 92733508 ID=MsG0580029129.01.T01:five_prime_utr;Parent=MsG0580029129.01.T01
Chr5 CDS 92734651 92734695 92734651 ID=MsG0580029129.01.T01:cds;Parent=MsG0580029129.01.T01
Chr5 CDS 92734994 92735183 92734994 ID=MsG0580029129.01.T01:cds;Parent=MsG0580029129.01.T01
Chr5 CDS 92736129 92736253 92736129 ID=MsG0580029129.01.T01:cds;Parent=MsG0580029129.01.T01
Chr5 CDS 92736453 92736494 92736453 ID=MsG0580029129.01.T01:cds;Parent=MsG0580029129.01.T01
Chr5 three_prime_UTR 92736495 92736571 92736495 ID=MsG0580029129.01.T01:three_prime_utr;Parent=MsG0580029129.01.T01
Chr5 three_prime_UTR 92737171 92737579 92737171 ID=MsG0580029129.01.T01:three_prime_utr;Parent=MsG0580029129.01.T01
Chr5 three_prime_UTR 92740857 92740905 92740857 ID=MsG0580029129.01.T01:three_prime_utr;Parent=MsG0580029129.01.T01
Chr5 mRNA 92733045 92736607 92733045 ID=MsG0580029129.01.T02;Parent=MsG0580029129.01;Name=MsG0580029129.01.T02;_AED=0.27;_eAED=0.28;_QI=1498|1|0.8|1|1|0.8|5|0|203
Chr5 exon 92736356 92736607 92736356 ID=MsG0580029129.01.T02:exon:26500;Parent=MsG0580029129.01.T02
Chr5 five_prime_UTR 92733045 92733399 92733045 ID=MsG0580029129.01.T02:five_prime_utr;Parent=MsG0580029129.01.T02
Chr5 five_prime_UTR 92733508 92734650 92733508 ID=MsG0580029129.01.T02:five_prime_utr;Parent=MsG0580029129.01.T02
Chr5 CDS 92734651 92734695 92734651 ID=MsG0580029129.01.T02:cds;Parent=MsG0580029129.01.T02
Chr5 CDS 92734994 92735183 92734994 ID=MsG0580029129.01.T02:cds;Parent=MsG0580029129.01.T02
Chr5 CDS 92736129 92736253 92736129 ID=MsG0580029129.01.T02:cds;Parent=MsG0580029129.01.T02
Chr5 CDS 92736356 92736607 92736356 ID=MsG0580029129.01.T02:cds;Parent=MsG0580029129.01.T02
Gene Sequence

>MsG0580029129.01.T01

ATGATAAATATTGGCTACATCATTTTGGCTGGTTCAGCTTTGAAGGCTGTTTATGTTCTATTTAGGGATGATGATCAGATGAAGCTTCCACATTTTATTGCCATAGCTGGACTTGTGTGTGCAATGTTTGCCATTTGTATTCCTCATCTTTCAGCTCTTGGAATTTGGCTCGGATTTTCGACAGTCTTAAGCCTCGCATATATTGTCATAGCACTTGTACTGTCACTAAAAGATGGAATAAAATCACCAGCTAGAGATTATAGTGTTCCAGGAACATCAACAAGTAAAATATTTACGACAATTGGGGCGTCTGCTAATCTCGTGTTCGCATACAATACAGGAATGCTTCCTGAGATACAGGGTACTGGGCTTATGGATCTTCGACACAAACTTTTTTGCTGA

>MsG0580029129.01.T02

ATGATAAATATTGGCTACATCATTTTGGCTGGTTCAGCTTTGAAGGCTGTTTATGTTCTATTTAGGGATGATGATCAGATGAAGCTTCCACATTTTATTGCCATAGCTGGACTTGTGTGTGCAATGTTTGCCATTTGTATTCCTCATCTTTCAGCTCTTGGAATTTGGCTCGGATTTTCGACAGTCTTAAGCCTCGCATATATTGTCATAGCACTTGTACTGTCACTAAAAGATGGAATAAAATCACCAGCTAGAGATTATAGTGTTCCAGGAACATCAACAAGTAAAATATTTACGACAATTGGGGCGTCTGCTAATCTCGTGTTCGCATACAATACAGGAATGCTTCCTGAGATACAGGCGACGATCAGACAACCAGTTGTAAAGAACATGATGAAAGCGCTATATTTTCAGTTTACCGTTGGAGTTCTGCCATTATATTTGGTTACCTTTGCAGGGTACTGGGCTTATGGATCTTCGACACAAACTTTTTTGCTGAATAATGTCAAGGGACCAATCTGGGTGAAAGTTGTGGCAAATATTACAGCCTTTCTTCAATCAGTCATTGCATTGCATGTAATCACTTCCAAACCAATACTTTGCTGCTTTTAA
Protein sequence

>MsG0580029129.01.T01

MINIGYIILAGSALKAVYVLFRDDDQMKLPHFIAIAGLVCAMFAICIPHLSALGIWLGFSTVLSLAYIVIALVLSLKDGIKSPARDYSVPGTSTSKIFTTIGASANLVFAYNTGMLPEIQGTGLMDLRHKLFC*

>MsG0580029129.01.T02

MINIGYIILAGSALKAVYVLFRDDDQMKLPHFIAIAGLVCAMFAICIPHLSALGIWLGFSTVLSLAYIVIALVLSLKDGIKSPARDYSVPGTSTSKIFTTIGASANLVFAYNTGMLPEIQATIRQPVVKNMMKALYFQFTVGVLPLYLVTFAGYWAYGSSTQTFLLNNVKGPIWVKVVANITAFLQSVIALHVITSKPILCCF*