Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025210.01.T01 | XP_003612372.1 | 97.412 | 425 | 8 | 1 | 1 | 425 | 1 | 422 | 0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025210.01.T01 | Q9SVG0 | 65.197 | 431 | 140 | 3 | 4 | 424 | 5 | 435 | 0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025210.01.T01 | G7K191 | 97.412 | 425 | 8 | 1 | 1 | 425 | 1 | 422 | 0.0 | 823 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580025210.01 | MsG0580025212.01 | 0.937112 | 5.880683e-98 | 5.227315e-93 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580025210.01 | MsG0580029129.01 | PPI |
| MsG0780040887.01 | MsG0580025210.01 | PPI |
| MsG0580025210.01 | MsG0880046268.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025210.01.T01 | MTR_5g024300 | 97.412 | 425 | 8 | 1 | 1 | 425 | 1 | 422 | 0.0 | 823 |
| MsG0580025210.01.T01 | MTR_8g073340 | 67.241 | 406 | 129 | 1 | 20 | 425 | 12 | 413 | 0.0 | 530 |
| MsG0580025210.01.T01 | MTR_7g107090 | 37.410 | 417 | 228 | 7 | 19 | 417 | 3 | 404 | 1.57e-76 | 244 |
| MsG0580025210.01.T01 | MTR_1g094620 | 23.928 | 443 | 289 | 15 | 4 | 421 | 117 | 536 | 3.96e-18 | 87.0 |
| MsG0580025210.01.T01 | MTR_1g094620 | 24.000 | 450 | 287 | 16 | 4 | 421 | 117 | 543 | 3.21e-17 | 84.3 |
| MsG0580025210.01.T01 | MTR_3g465510 | 26.303 | 422 | 247 | 17 | 31 | 422 | 42 | 429 | 1.05e-16 | 82.0 |
| MsG0580025210.01.T01 | MTR_7g010750 | 27.119 | 413 | 253 | 18 | 32 | 422 | 42 | 428 | 3.99e-16 | 80.5 |
| MsG0580025210.01.T01 | MTR_7g010790 | 26.620 | 432 | 263 | 20 | 18 | 422 | 25 | 429 | 2.36e-15 | 78.2 |
| MsG0580025210.01.T01 | MTR_3g465440 | 25.899 | 417 | 248 | 17 | 31 | 418 | 48 | 432 | 1.73e-14 | 76.3 |
| MsG0580025210.01.T01 | MTR_3g033730 | 26.328 | 433 | 244 | 18 | 26 | 422 | 36 | 429 | 2.89e-13 | 71.6 |
| MsG0580025210.01.T01 | MTR_8g467180 | 24.020 | 408 | 272 | 13 | 31 | 422 | 20 | 405 | 3.95e-13 | 70.9 |
| MsG0580025210.01.T01 | MTR_8g467190 | 23.604 | 394 | 267 | 13 | 43 | 422 | 31 | 404 | 2.55e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025210.01.T01 | AT4G38250 | 65.197 | 431 | 140 | 3 | 4 | 424 | 5 | 435 | 0.0 | 558 |
| MsG0580025210.01.T01 | AT2G42005 | 65.926 | 405 | 132 | 2 | 18 | 420 | 10 | 410 | 0.0 | 543 |
| MsG0580025210.01.T01 | AT5G65990 | 66.504 | 409 | 131 | 2 | 17 | 425 | 25 | 427 | 0.0 | 516 |
| MsG0580025210.01.T01 | AT3G11900 | 36.073 | 438 | 234 | 8 | 7 | 417 | 11 | 429 | 3.67e-74 | 238 |
| MsG0580025210.01.T01 | AT3G11900 | 36.073 | 438 | 234 | 8 | 7 | 417 | 11 | 429 | 3.67e-74 | 238 |
| MsG0580025210.01.T01 | AT5G15240 | 26.712 | 438 | 277 | 15 | 4 | 420 | 5 | 419 | 3.94e-21 | 95.5 |
| MsG0580025210.01.T01 | AT2G41190 | 24.129 | 402 | 276 | 10 | 32 | 421 | 148 | 532 | 1.01e-18 | 89.0 |
| MsG0580025210.01.T01 | AT2G39130 | 24.408 | 422 | 279 | 12 | 19 | 421 | 145 | 545 | 2.84e-18 | 87.4 |
| MsG0580025210.01.T01 | AT2G39130 | 24.408 | 422 | 279 | 12 | 19 | 421 | 145 | 545 | 2.84e-18 | 87.4 |
| MsG0580025210.01.T01 | AT5G02180 | 26.128 | 421 | 265 | 12 | 20 | 420 | 150 | 544 | 7.19e-15 | 77.0 |
| MsG0580025210.01.T01 | AT5G02180 | 26.128 | 421 | 265 | 12 | 20 | 420 | 150 | 544 | 7.19e-15 | 77.0 |
| MsG0580025210.01.T01 | AT3G54830 | 25.723 | 346 | 215 | 11 | 44 | 367 | 163 | 488 | 4.15e-14 | 74.7 |
| MsG0580025210.01.T01 | AT3G54830 | 25.723 | 346 | 215 | 11 | 44 | 367 | 163 | 488 | 4.15e-14 | 74.7 |
| MsG0580025210.01.T01 | AT2G39130 | 25.344 | 363 | 231 | 12 | 19 | 362 | 145 | 486 | 9.61e-14 | 73.2 |
| MsG0580025210.01.T01 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 1.48e-13 | 72.4 |
| MsG0580025210.01.T01 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 1.48e-13 | 72.4 |
| MsG0580025210.01.T01 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 1.48e-13 | 72.4 |
| MsG0580025210.01.T01 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 1.48e-13 | 72.4 |
| MsG0580025210.01.T01 | AT5G15240 | 26.239 | 343 | 217 | 11 | 98 | 420 | 7 | 333 | 1.90e-13 | 71.6 |
| MsG0580025210.01.T01 | AT3G09330 | 22.967 | 418 | 288 | 9 | 19 | 421 | 122 | 520 | 5.58e-12 | 67.8 |
| MsG0580025210.01.T01 | AT3G09340 | 23.206 | 418 | 287 | 9 | 19 | 421 | 122 | 520 | 8.01e-12 | 67.4 |
| MsG0580025210.01.T01 | AT2G41190 | 24.225 | 355 | 238 | 11 | 32 | 372 | 148 | 485 | 4.05e-11 | 65.1 |
Find 99 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTAAAAGCTTCCAAATT+TGG | 0.113806 | 5:+15360724 | None:intergenic |
| GGAATTGTTGTTGCTGTTTA+TGG | 0.149455 | 5:-15360157 | MsG0580025210.01.T01:CDS |
| CGGCGAAAAGTTTGTATCTT+TGG | 0.171178 | 5:-15360891 | MsG0580025210.01.T01:CDS |
| ACTAAAGATAAAGAGAAATT+TGG | 0.176282 | 5:-15360619 | MsG0580025210.01.T01:CDS |
| GGTGAGGTGGTTGTTGGTTT+TGG | 0.189587 | 5:-15360353 | MsG0580025210.01.T01:CDS |
| CATGCAAAATAAGCCAAATT+TGG | 0.203380 | 5:-15360737 | MsG0580025210.01.T01:CDS |
| AAATACTCAAAGGGGCTAAA+TGG | 0.209190 | 5:+15360821 | None:intergenic |
| TCTATATTATTTGGTGCTTT+TGG | 0.213007 | 5:-15360565 | MsG0580025210.01.T01:CDS |
| GGTATGATTTCTATATTATT+TGG | 0.220969 | 5:-15360574 | MsG0580025210.01.T01:CDS |
| AATCAAATCTTTCGGCGATT+TGG | 0.225599 | 5:-15361079 | MsG0580025210.01.T01:CDS |
| GATATTATTACTAATAATTT+AGG | 0.226982 | 5:-15360505 | MsG0580025210.01.T01:CDS |
| GGCGAAAAGTTTGTATCTTT+GGG | 0.249310 | 5:-15360890 | MsG0580025210.01.T01:CDS |
| GCCGTTAAACCGATGAAAAT+AGG | 0.259033 | 5:+15360910 | None:intergenic |
| ATAGGTGTTATGGTTCAATT+AGG | 0.262950 | 5:-15360472 | MsG0580025210.01.T01:CDS |
| ATCGCCGAAAGATTTGATTT+TGG | 0.265782 | 5:+15361083 | None:intergenic |
| ATCAAATCTTTCGGCGATTT+GGG | 0.268793 | 5:-15361078 | MsG0580025210.01.T01:CDS |
| GGTTTCAGATGGGGCAATTA+TGG | 0.276313 | 5:-15360185 | MsG0580025210.01.T01:CDS |
| GCCTGCTTTGTTTCATTGTA+TGG | 0.293766 | 5:-15360239 | MsG0580025210.01.T01:CDS |
| AGTAGTGTTTGTGTTGTTCT+TGG | 0.299249 | 5:-15360271 | MsG0580025210.01.T01:CDS |
| TGTGAGTTTGGTGGCACTTT+TGG | 0.301518 | 5:-15360329 | MsG0580025210.01.T01:CDS |
| CGGTGATGGATTCGAGTTTC+CGG | 0.304307 | 5:+15361112 | None:intergenic |
| ATGATTGTGCTTTCACAAGC+TGG | 0.315652 | 5:-15361012 | MsG0580025210.01.T01:CDS |
| ATCGTCGGCGCCGGCGTTCT+CGG | 0.337782 | 5:-15361240 | MsG0580025210.01.T01:CDS |
| GTGTCTTCGCGTGGGTAGGG+TGG | 0.342661 | 5:+15361330 | None:intergenic |
| CTAAAGATAAAGAGAAATTT+GGG | 0.358199 | 5:-15360618 | MsG0580025210.01.T01:CDS |
| TTCTCCAAAATCAAATCTTT+CGG | 0.360516 | 5:-15361087 | MsG0580025210.01.T01:CDS |
| TTTGAATTGGGAGGAGAGGG+GGG | 0.368849 | 5:+15361287 | None:intergenic |
| TTCTGCCAAGAGTATTGTTA+TGG | 0.380591 | 5:-15360779 | MsG0580025210.01.T01:CDS |
| AAGTTGAAGAAATGAAAATA+AGG | 0.383503 | 5:+15360974 | None:intergenic |
| CTAGGTATTGTTTGTGGGTG+AGG | 0.391723 | 5:-15360369 | MsG0580025210.01.T01:CDS |
| TTTGTGGGTGAGGTGGTTGT+TGG | 0.396163 | 5:-15360359 | MsG0580025210.01.T01:CDS |
| GATGATGAATCCTGTTTATG+AGG | 0.399583 | 5:-15360416 | MsG0580025210.01.T01:CDS |
| TTCACCATTTGTGGCCCATT+AGG | 0.399764 | 5:-15361054 | MsG0580025210.01.T01:CDS |
| GATTTGGGTTTCACCATTTG+TGG | 0.407357 | 5:-15361063 | MsG0580025210.01.T01:CDS |
| GTGATTCTAGGTATTGTTTG+TGG | 0.411186 | 5:-15360375 | MsG0580025210.01.T01:CDS |
| AATTTAGGTCAAGGTGTGAT+AGG | 0.415141 | 5:-15360490 | MsG0580025210.01.T01:CDS |
| CCGTTAAACCGATGAAAATA+GGG | 0.418409 | 5:+15360911 | None:intergenic |
| AATACTCAAAGGGGCTAAAT+GGG | 0.422180 | 5:+15360822 | None:intergenic |
| GTCAGAGATTCTTTCTCCTA+AGG | 0.423873 | 5:-15360119 | MsG0580025210.01.T01:CDS |
| TGGAGATGCTTGGTTTCAGA+TGG | 0.426094 | 5:-15360196 | MsG0580025210.01.T01:CDS |
| TGATTCTAGGTATTGTTTGT+GGG | 0.427448 | 5:-15360374 | MsG0580025210.01.T01:CDS |
| TCAAGGTGTGATAGGTGTTA+TGG | 0.428573 | 5:-15360482 | MsG0580025210.01.T01:CDS |
| GAGGTAGCCGGTGCGTTTGA+AGG | 0.444851 | 5:+15361206 | None:intergenic |
| GGGGTGTCTTCGCGTGGGTA+GGG | 0.447145 | 5:+15361327 | None:intergenic |
| CCGGTGCGTTTGAAGGAGTA+AGG | 0.447211 | 5:+15361213 | None:intergenic |
| AGAGTTGGGTTGGAGATGCT+TGG | 0.457507 | 5:-15360206 | MsG0580025210.01.T01:CDS |
| TGATTGTGCTTTCACAAGCT+GGG | 0.465440 | 5:-15361011 | MsG0580025210.01.T01:CDS |
| AATCTCTGACACAGAAGTAT+AGG | 0.468581 | 5:+15360132 | None:intergenic |
| TTCCAAATCAATCAAGCCTT+AGG | 0.468756 | 5:+15360103 | None:intergenic |
| TTGAATTGGGAGGAGAGGGG+GGG | 0.471686 | 5:+15361288 | None:intergenic |
| TGTCTTCGCGTGGGTAGGGT+GGG | 0.472433 | 5:+15361331 | None:intergenic |
| GGAGATGCTTGGTTTCAGAT+GGG | 0.475884 | 5:-15360195 | MsG0580025210.01.T01:CDS |
| GGGGTGAGTTAGTAAGAAGG+GGG | 0.479036 | 5:+15361307 | None:intergenic |
| TAGGTGTTATGGTTCAATTA+GGG | 0.480288 | 5:-15360471 | MsG0580025210.01.T01:CDS |
| AGCTTGTGAAAGCACAATCA+TGG | 0.488957 | 5:+15361014 | None:intergenic |
| TTCATCGCCATCGTCGGCGC+CGG | 0.491063 | 5:-15361249 | MsG0580025210.01.T01:CDS |
| TTCCACCATAACAATACTCT+TGG | 0.491432 | 5:+15360774 | None:intergenic |
| GATGAGACCGGTGAGGTAGC+CGG | 0.501029 | 5:+15361194 | None:intergenic |
| ATTACTAATAATTTAGGTCA+AGG | 0.502446 | 5:-15360499 | MsG0580025210.01.T01:CDS |
| GGTTTCAGCGGTGGAGTCAC+CGG | 0.502765 | 5:+15360936 | None:intergenic |
| ACGGCCTAATGGGCCACAAA+TGG | 0.508734 | 5:+15361050 | None:intergenic |
| GAATTCAACCCTAATTGAAA+AGG | 0.509944 | 5:+15360859 | None:intergenic |
| TGGGTAGGGTGGGAGTGAGT+AGG | 0.521131 | 5:+15361341 | None:intergenic |
| TGAGGTAAGCGATGGTGAAG+AGG | 0.524702 | 5:+15361169 | None:intergenic |
| AACATGGTGTTCAAAGAAGC+AGG | 0.533056 | 5:-15361372 | MsG0580025210.01.T01:CDS |
| AACATCTTCATCGCCATCGT+CGG | 0.542040 | 5:-15361255 | MsG0580025210.01.T01:CDS |
| AAACGCACCGGCTACCTCAC+CGG | 0.545253 | 5:-15361201 | MsG0580025210.01.T01:CDS |
| TAAACAGGATTCATCATCAA+AGG | 0.546520 | 5:+15360421 | None:intergenic |
| GGTATTGTTTGTGGGTGAGG+TGG | 0.548580 | 5:-15360366 | MsG0580025210.01.T01:CDS |
| TCCTCCTCGTCAACACTCGC+CGG | 0.555101 | 5:-15361131 | MsG0580025210.01.T01:CDS |
| TGCCAAGAGTATTGTTATGG+TGG | 0.559016 | 5:-15360776 | MsG0580025210.01.T01:CDS |
| ACTTTATCATTTCTCACCGC+CGG | 0.560571 | 5:-15360955 | MsG0580025210.01.T01:CDS |
| GGGTGAGTTAGTAAGAAGGG+GGG | 0.563619 | 5:+15361308 | None:intergenic |
| TCTTTAGTCTCACTTTCCAA+AGG | 0.564288 | 5:+15360634 | None:intergenic |
| GAGATGCTTGGTTTCAGATG+GGG | 0.565266 | 5:-15360194 | MsG0580025210.01.T01:CDS |
| GGCGATGAAGATGTTGGCGA+AGG | 0.571223 | 5:+15361263 | None:intergenic |
| ACCATACAATGAAACAAAGC+AGG | 0.572774 | 5:+15360238 | None:intergenic |
| GACGATGGCGATGAAGATGT+TGG | 0.577278 | 5:+15361257 | None:intergenic |
| AGATAAAGAGAAATTTGGGA+GGG | 0.580185 | 5:-15360614 | MsG0580025210.01.T01:CDS |
| GAGGAGGAGCATGCAGTGGT+AGG | 0.580282 | 5:+15361146 | None:intergenic |
| GCGAAAAGTTTGTATCTTTG+GGG | 0.582000 | 5:-15360889 | MsG0580025210.01.T01:CDS |
| AATAGGGACGGTTTCAGCGG+TGG | 0.583571 | 5:+15360927 | None:intergenic |
| GAGAACGCCGGCGCCGACGA+TGG | 0.586591 | 5:+15361242 | None:intergenic |
| CCTTACTCCTTCAAACGCAC+CGG | 0.595955 | 5:-15361213 | MsG0580025210.01.T01:CDS |
| GAAAATAGGGACGGTTTCAG+CGG | 0.597712 | 5:+15360924 | None:intergenic |
| CGGAAACTCGAATCCATCAC+CGG | 0.599755 | 5:-15361111 | MsG0580025210.01.T01:CDS |
| GGAGCATGCAGTGGTAGGTG+AGG | 0.612235 | 5:+15361151 | None:intergenic |
| CGGTGCGTTTGAAGGAGTAA+GGG | 0.615815 | 5:+15361214 | None:intergenic |
| AAGCACAATCATGGAGTCAA+CGG | 0.622860 | 5:+15361023 | None:intergenic |
| AAGATAAAGAGAAATTTGGG+AGG | 0.627925 | 5:-15360615 | MsG0580025210.01.T01:CDS |
| GGTGAAGAGGTTGATGAGAC+CGG | 0.628720 | 5:+15361182 | None:intergenic |
| GTAAGGGAGACCGAGAACGC+CGG | 0.630022 | 5:+15361230 | None:intergenic |
| TCCGGCGAGTGTTGACGAGG+AGG | 0.631211 | 5:+15361130 | None:intergenic |
| GTTTCCGGCGAGTGTTGACG+AGG | 0.647193 | 5:+15361127 | None:intergenic |
| TTCAGCGGTGGAGTCACCGG+CGG | 0.661065 | 5:+15360939 | None:intergenic |
| TAAACCGATGAAAATAGGGA+CGG | 0.664104 | 5:+15360915 | None:intergenic |
| TGACGAGGAGGAGCATGCAG+TGG | 0.678520 | 5:+15361142 | None:intergenic |
| GTGGTAGGTGAGGTAAGCGA+TGG | 0.733327 | 5:+15361161 | None:intergenic |
| AGAGGTTGATGAGACCGGTG+AGG | 0.739124 | 5:+15361187 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTATTACTAATAATTT+AGG | - | Chr5:15360978-15360997 | MsG0580025210.01.T01:CDS | 10.0% |
| !! | AAGTTGAAGAAATGAAAATA+AGG | + | Chr5:15360512-15360531 | None:intergenic | 20.0% |
| !! | ACTAAAGATAAAGAGAAATT+TGG | - | Chr5:15360864-15360883 | MsG0580025210.01.T01:CDS | 20.0% |
| !! | ATTACTAATAATTTAGGTCA+AGG | - | Chr5:15360984-15361003 | MsG0580025210.01.T01:CDS | 20.0% |
| !! | CTAAAGATAAAGAGAAATTT+GGG | - | Chr5:15360865-15360884 | MsG0580025210.01.T01:CDS | 20.0% |
| !! | GGTATGATTTCTATATTATT+TGG | - | Chr5:15360909-15360928 | MsG0580025210.01.T01:CDS | 20.0% |
| ! | GACAAAAAATCAGCAAAATT+TGG | + | Chr5:15361182-15361201 | None:intergenic | 25.0% |
| ! | TTCTCCAAAATCAAATCTTT+CGG | - | Chr5:15360396-15360415 | MsG0580025210.01.T01:CDS | 25.0% |
| !! | GTTTCATTGTATGGTTTTTA+AGG | - | Chr5:15361253-15361272 | MsG0580025210.01.T01:CDS | 25.0% |
| !!! | GTTGTTTTCCTTTTCAATTA+GGG | - | Chr5:15360616-15360635 | MsG0580025210.01.T01:CDS | 25.0% |
| !!! | GTTTTAGGTTATTTTGCTTT+TGG | - | Chr5:15360942-15360961 | MsG0580025210.01.T01:CDS | 25.0% |
| !!! | TCTATATTATTTGGTGCTTT+TGG | - | Chr5:15360918-15360937 | MsG0580025210.01.T01:CDS | 25.0% |
| !!! | TTTATGAGGTTTTTGAAAGA+AGG | - | Chr5:15361081-15361100 | MsG0580025210.01.T01:CDS | 25.0% |
| AAGATAAAGAGAAATTTGGG+AGG | - | Chr5:15360868-15360887 | MsG0580025210.01.T01:CDS | 30.0% | |
| ACATCAGCAAAAATACTCAA+AGG | + | Chr5:15360675-15360694 | None:intergenic | 30.0% | |
| AGATAAAGAGAAATTTGGGA+GGG | - | Chr5:15360869-15360888 | MsG0580025210.01.T01:CDS | 30.0% | |
| ATCAGCAAAAATACTCAAAG+GGG | + | Chr5:15360673-15360692 | None:intergenic | 30.0% | |
| CATCAGCAAAAATACTCAAA+GGG | + | Chr5:15360674-15360693 | None:intergenic | 30.0% | |
| CATGCAAAATAAGCCAAATT+TGG | - | Chr5:15360746-15360765 | MsG0580025210.01.T01:CDS | 30.0% | |
| CTTTCAAAAACCTCATAAAC+AGG | + | Chr5:15361080-15361099 | None:intergenic | 30.0% | |
| GAATTCAACCCTAATTGAAA+AGG | + | Chr5:15360627-15360646 | None:intergenic | 30.0% | |
| TAAACAGGATTCATCATCAA+AGG | + | Chr5:15361065-15361084 | None:intergenic | 30.0% | |
| ! | ATAGGTGTTATGGTTCAATT+AGG | - | Chr5:15361011-15361030 | MsG0580025210.01.T01:CDS | 30.0% |
| ! | CCAAATTTGGAAGCTTTTAA+GGG | - | Chr5:15360759-15360778 | MsG0580025210.01.T01:CDS | 30.0% |
| ! | TAGGTGTTATGGTTCAATTA+GGG | - | Chr5:15361012-15361031 | MsG0580025210.01.T01:CDS | 30.0% |
| ! | TGATTCTAGGTATTGTTTGT+GGG | - | Chr5:15361109-15361128 | MsG0580025210.01.T01:CDS | 30.0% |
| !! | AAAGAAGGTTTTGTGATTCT+AGG | - | Chr5:15361096-15361115 | MsG0580025210.01.T01:CDS | 30.0% |
| !! | AGATTTGATTTTGGAGAAAC+CGG | + | Chr5:15360394-15360413 | None:intergenic | 30.0% |
| !! | ATGGTTTTTAAGGAAGAGTT+GGG | - | Chr5:15361263-15361282 | MsG0580025210.01.T01:CDS | 30.0% |
| !! | GGTTGTTTTCCTTTTCAATT+AGG | - | Chr5:15360615-15360634 | MsG0580025210.01.T01:CDS | 30.0% |
| !! | GTTTATGCTTTTGAAGGAAT+TGG | - | Chr5:15360816-15360835 | MsG0580025210.01.T01:CDS | 30.0% |
| !! | TATGGTTTTTAAGGAAGAGT+TGG | - | Chr5:15361262-15361281 | MsG0580025210.01.T01:CDS | 30.0% |
| !!! | GGTGTTTTTTTCTATGGTAT+TGG | - | Chr5:15360786-15360805 | MsG0580025210.01.T01:CDS | 30.0% |
| !!! | GGTTTTGGTGTTTTTTTCTA+TGG | - | Chr5:15360780-15360799 | MsG0580025210.01.T01:CDS | 30.0% |
| AAATACTCAAAGGGGCTAAA+TGG | + | Chr5:15360665-15360684 | None:intergenic | 35.0% | |
| AATACTCAAAGGGGCTAAAT+GGG | + | Chr5:15360664-15360683 | None:intergenic | 35.0% | |
| AATCAAATCTTTCGGCGATT+TGG | - | Chr5:15360404-15360423 | MsG0580025210.01.T01:CDS | 35.0% | |
| AATTTAGGTCAAGGTGTGAT+AGG | - | Chr5:15360993-15361012 | MsG0580025210.01.T01:CDS | 35.0% | |
| ACCATACAATGAAACAAAGC+AGG | + | Chr5:15361248-15361267 | None:intergenic | 35.0% | |
| ATCAAATCTTTCGGCGATTT+GGG | - | Chr5:15360405-15360424 | MsG0580025210.01.T01:CDS | 35.0% | |
| CCCTTAAAAGCTTCCAAATT+TGG | + | Chr5:15360762-15360781 | None:intergenic | 35.0% | |
| CCGTTAAACCGATGAAAATA+GGG | + | Chr5:15360575-15360594 | None:intergenic | 35.0% | |
| GATGATGAATCCTGTTTATG+AGG | - | Chr5:15361067-15361086 | MsG0580025210.01.T01:CDS | 35.0% | |
| GCGAAAAGTTTGTATCTTTG+GGG | - | Chr5:15360594-15360613 | MsG0580025210.01.T01:CDS | 35.0% | |
| GGCGAAAAGTTTGTATCTTT+GGG | - | Chr5:15360593-15360612 | MsG0580025210.01.T01:CDS | 35.0% | |
| TAAACCGATGAAAATAGGGA+CGG | + | Chr5:15360571-15360590 | None:intergenic | 35.0% | |
| TCTTTAGTCTCACTTTCCAA+AGG | + | Chr5:15360852-15360871 | None:intergenic | 35.0% | |
| TTCCACCATAACAATACTCT+TGG | + | Chr5:15360712-15360731 | None:intergenic | 35.0% | |
| ! | AATCTCTGACACAGAAGTAT+AGG | + | Chr5:15361354-15361373 | None:intergenic | 35.0% |
| ! | AGAAATTTGGGAGGGTTTTA+GGG | - | Chr5:15360877-15360896 | MsG0580025210.01.T01:CDS | 35.0% |
| ! | AGTAGTGTTTGTGTTGTTCT+TGG | - | Chr5:15361212-15361231 | MsG0580025210.01.T01:CDS | 35.0% |
| ! | GCCAAATTTGGAAGCTTTTA+AGG | - | Chr5:15360758-15360777 | MsG0580025210.01.T01:CDS | 35.0% |
| ! | GTAGCTGTTTATGCTTTTGA+AGG | - | Chr5:15360810-15360829 | MsG0580025210.01.T01:CDS | 35.0% |
| ! | GTGATTCTAGGTATTGTTTG+TGG | - | Chr5:15361108-15361127 | MsG0580025210.01.T01:CDS | 35.0% |
| ! | TGCTTTTGGTGAAGAAACTA+AGG | - | Chr5:15360956-15360975 | MsG0580025210.01.T01:CDS | 35.0% |
| !! | AATTGGAATGGTTTTGCCTT+TGG | - | Chr5:15360833-15360852 | MsG0580025210.01.T01:CDS | 35.0% |
| !! | ATCGCCGAAAGATTTGATTT+TGG | + | Chr5:15360403-15360422 | None:intergenic | 35.0% |
| !! | GGAATTGTTGTTGCTGTTTA+TGG | - | Chr5:15361326-15361345 | MsG0580025210.01.T01:CDS | 35.0% |
| !! | TGCTTTTGAAGGAATTGGAA+TGG | - | Chr5:15360821-15360840 | MsG0580025210.01.T01:CDS | 35.0% |
| !! | TTCTGCCAAGAGTATTGTTA+TGG | - | Chr5:15360704-15360723 | MsG0580025210.01.T01:CDS | 35.0% |
| !! | TTGGAAGCTTTTAAGGGTTT+TGG | - | Chr5:15360765-15360784 | MsG0580025210.01.T01:CDS | 35.0% |
| !! | TTTTTAAGGAAGAGTTGGGT+TGG | - | Chr5:15361267-15361286 | MsG0580025210.01.T01:CDS | 35.0% |
| !!! | CCCTATTTTCATCGGTTTAA+CGG | - | Chr5:15360572-15360591 | MsG0580025210.01.T01:CDS | 35.0% |
| !!! | GCTGATTTTTTGTCACTTGT+TGG | - | Chr5:15361188-15361207 | MsG0580025210.01.T01:CDS | 35.0% |
| !!! | TTTGGTGCTTTTGGTGTTTT+AGG | - | Chr5:15360927-15360946 | MsG0580025210.01.T01:CDS | 35.0% |
| AAGCACAATCATGGAGTCAA+CGG | + | Chr5:15360463-15360482 | None:intergenic | 40.0% | |
| ACTTTATCATTTCTCACCGC+CGG | - | Chr5:15360528-15360547 | MsG0580025210.01.T01:CDS | 40.0% | |
| ATGATTGTGCTTTCACAAGC+TGG | - | Chr5:15360471-15360490 | MsG0580025210.01.T01:CDS | 40.0% | |
| CGGCGAAAAGTTTGTATCTT+TGG | - | Chr5:15360592-15360611 | MsG0580025210.01.T01:CDS | 40.0% | |
| GCCGTTAAACCGATGAAAAT+AGG | + | Chr5:15360576-15360595 | None:intergenic | 40.0% | |
| GTCAGAGATTCTTTCTCCTA+AGG | - | Chr5:15361364-15361383 | MsG0580025210.01.T01:CDS | 40.0% | |
| TCAAGGTGTGATAGGTGTTA+TGG | - | Chr5:15361001-15361020 | MsG0580025210.01.T01:CDS | 40.0% | |
| TCATGGAGTCAACGGAAAAA+CGG | + | Chr5:15360455-15360474 | None:intergenic | 40.0% | |
| TGATTGTGCTTTCACAAGCT+GGG | - | Chr5:15360472-15360491 | MsG0580025210.01.T01:CDS | 40.0% | |
| ! | AGCTTGTGAAAGCACAATCA+TGG | + | Chr5:15360472-15360491 | None:intergenic | 40.0% |
| ! | GAAACCGTCCCTATTTTCAT+CGG | - | Chr5:15360564-15360583 | MsG0580025210.01.T01:CDS | 40.0% |
| ! | GAGAAATTTGGGAGGGTTTT+AGG | - | Chr5:15360876-15360895 | MsG0580025210.01.T01:CDS | 40.0% |
| ! | GATGGGGCAATTATGGTTTT+TGG | - | Chr5:15361305-15361324 | MsG0580025210.01.T01:CDS | 40.0% |
| ! | GATTTGGGTTTCACCATTTG+TGG | - | Chr5:15360420-15360439 | MsG0580025210.01.T01:CDS | 40.0% |
| !! | GCCTGCTTTGTTTCATTGTA+TGG | - | Chr5:15361244-15361263 | MsG0580025210.01.T01:CDS | 40.0% |
| !! | TGCCAAGAGTATTGTTATGG+TGG | - | Chr5:15360707-15360726 | MsG0580025210.01.T01:CDS | 40.0% |
| !!! | GTTGGCGAAGGTTTTGAATT+GGG | + | Chr5:15360211-15360230 | None:intergenic | 40.0% |
| !!! | GTTGGTTTTGGTTGTGAGTT+TGG | - | Chr5:15361142-15361161 | MsG0580025210.01.T01:CDS | 40.0% |
| !!! | TGTTGGCGAAGGTTTTGAAT+TGG | + | Chr5:15360212-15360231 | None:intergenic | 40.0% |
| AACATCTTCATCGCCATCGT+CGG | - | Chr5:15360228-15360247 | MsG0580025210.01.T01:CDS | 45.0% | |
| CAACGGAAAAACGGCCTAAT+GGG | + | Chr5:15360446-15360465 | None:intergenic | 45.0% | |
| GAAAATAGGGACGGTTTCAG+CGG | + | Chr5:15360562-15360581 | None:intergenic | 45.0% | |
| GAGATGCTTGGTTTCAGATG+GGG | - | Chr5:15361289-15361308 | MsG0580025210.01.T01:CDS | 45.0% | |
| GGAGATGCTTGGTTTCAGAT+GGG | - | Chr5:15361288-15361307 | MsG0580025210.01.T01:CDS | 45.0% | |
| GGTTTCAGATGGGGCAATTA+TGG | - | Chr5:15361298-15361317 | MsG0580025210.01.T01:CDS | 45.0% | |
| TCAACGGAAAAACGGCCTAA+TGG | + | Chr5:15360447-15360466 | None:intergenic | 45.0% | |
| TGGAGATGCTTGGTTTCAGA+TGG | - | Chr5:15361287-15361306 | MsG0580025210.01.T01:CDS | 45.0% | |
| TTCACCATTTGTGGCCCATT+AGG | - | Chr5:15360429-15360448 | MsG0580025210.01.T01:CDS | 45.0% | |
| ! | CTAGGTATTGTTTGTGGGTG+AGG | - | Chr5:15361114-15361133 | MsG0580025210.01.T01:CDS | 45.0% |
| ! | TTTTGAATTGGGAGGAGAGG+GGG | + | Chr5:15360200-15360219 | None:intergenic | 45.0% |
| !! | GATTTTGGAGAAACCGGTGA+TGG | + | Chr5:15360388-15360407 | None:intergenic | 45.0% |
| !! | GTTTTGAATTGGGAGGAGAG+GGG | + | Chr5:15360201-15360220 | None:intergenic | 45.0% |
| !! | TGTGAGTTTGGTGGCACTTT+TGG | - | Chr5:15361154-15361173 | MsG0580025210.01.T01:CDS | 45.0% |
| !!! | AGGGTTTTAGGGTTAGGGAT+GGG | - | Chr5:15360888-15360907 | MsG0580025210.01.T01:CDS | 45.0% |
| !!! | AGGTTTTGAATTGGGAGGAG+AGG | + | Chr5:15360203-15360222 | None:intergenic | 45.0% |
| !!! | GGTTTTGAATTGGGAGGAGA+GGG | + | Chr5:15360202-15360221 | None:intergenic | 45.0% |
| !!! | GGTTTTGGTTGTGAGTTTGG+TGG | - | Chr5:15361145-15361164 | MsG0580025210.01.T01:CDS | 45.0% |
| !!! | TTGGGAGGGTTTTAGGGTTA+GGG | - | Chr5:15360883-15360902 | MsG0580025210.01.T01:CDS | 45.0% |
| !!! | TTTGGGAGGGTTTTAGGGTT+AGG | - | Chr5:15360882-15360901 | MsG0580025210.01.T01:CDS | 45.0% |
| CCTTACTCCTTCAAACGCAC+CGG | - | Chr5:15360270-15360289 | MsG0580025210.01.T01:CDS | 50.0% | |
| CGGAAACTCGAATCCATCAC+CGG | - | Chr5:15360372-15360391 | MsG0580025210.01.T01:CDS | 50.0% | |
| CGGTGCGTTTGAAGGAGTAA+GGG | + | Chr5:15360272-15360291 | None:intergenic | 50.0% | |
| GACGATGGCGATGAAGATGT+TGG | + | Chr5:15360229-15360248 | None:intergenic | 50.0% | |
| GGGGGGTGAGTTAGTAAGAA+GGG | + | Chr5:15360181-15360200 | None:intergenic | 50.0% | |
| GGGGGTGAGTTAGTAAGAAG+GGG | + | Chr5:15360180-15360199 | None:intergenic | 50.0% | |
| GGGGTGAGTTAGTAAGAAGG+GGG | + | Chr5:15360179-15360198 | None:intergenic | 50.0% | |
| GGGTGAGTTAGTAAGAAGGG+GGG | + | Chr5:15360178-15360197 | None:intergenic | 50.0% | |
| GGTATTGTTTGTGGGTGAGG+TGG | - | Chr5:15361117-15361136 | MsG0580025210.01.T01:CDS | 50.0% | |
| TGAGGTAAGCGATGGTGAAG+AGG | + | Chr5:15360317-15360336 | None:intergenic | 50.0% | |
| TTTGAATTGGGAGGAGAGGG+GGG | + | Chr5:15360199-15360218 | None:intergenic | 50.0% | |
| TTTGTGGGTGAGGTGGTTGT+TGG | - | Chr5:15361124-15361143 | MsG0580025210.01.T01:CDS | 50.0% | |
| !! | AGAGTTGGGTTGGAGATGCT+TGG | - | Chr5:15361277-15361296 | MsG0580025210.01.T01:CDS | 50.0% |
| !! | CGGTGATGGATTCGAGTTTC+CGG | + | Chr5:15360374-15360393 | None:intergenic | 50.0% |
| !! | GGTGAAGAGGTTGATGAGAC+CGG | + | Chr5:15360304-15360323 | None:intergenic | 50.0% |
| !!! | GAGGGTTTTAGGGTTAGGGA+TGG | - | Chr5:15360887-15360906 | MsG0580025210.01.T01:CDS | 50.0% |
| !!! | GGCGAAGGTTTTGAATTGGG+AGG | + | Chr5:15360208-15360227 | None:intergenic | 50.0% |
| !!! | GGTGAGGTGGTTGTTGGTTT+TGG | - | Chr5:15361130-15361149 | MsG0580025210.01.T01:CDS | 50.0% |
| AATAGGGACGGTTTCAGCGG+TGG | + | Chr5:15360559-15360578 | None:intergenic | 55.0% | |
| CCGGTGCGTTTGAAGGAGTA+AGG | + | Chr5:15360273-15360292 | None:intergenic | 55.0% | |
| GGCGATGAAGATGTTGGCGA+AGG | + | Chr5:15360223-15360242 | None:intergenic | 55.0% | |
| GGGGGGGTGAGTTAGTAAGA+AGG | + | Chr5:15360182-15360201 | None:intergenic | 55.0% | |
| GTGGTAGGTGAGGTAAGCGA+TGG | + | Chr5:15360325-15360344 | None:intergenic | 55.0% | |
| TTGAATTGGGAGGAGAGGGG+GGG | + | Chr5:15360198-15360217 | None:intergenic | 55.0% | |
| ! | ACGGCCTAATGGGCCACAAA+TGG | + | Chr5:15360436-15360455 | None:intergenic | 55.0% |
| !! | AGAGGTTGATGAGACCGGTG+AGG | + | Chr5:15360299-15360318 | None:intergenic | 55.0% |
| GAGGTAGCCGGTGCGTTTGA+AGG | + | Chr5:15360280-15360299 | None:intergenic | 60.0% | |
| GATGAGACCGGTGAGGTAGC+CGG | + | Chr5:15360292-15360311 | None:intergenic | 60.0% | |
| GGAGCATGCAGTGGTAGGTG+AGG | + | Chr5:15360335-15360354 | None:intergenic | 60.0% | |
| GGTTTCAGCGGTGGAGTCAC+CGG | + | Chr5:15360550-15360569 | None:intergenic | 60.0% | |
| GTAAGGGAGACCGAGAACGC+CGG | + | Chr5:15360256-15360275 | None:intergenic | 60.0% | |
| TCCTCCTCGTCAACACTCGC+CGG | - | Chr5:15360352-15360371 | MsG0580025210.01.T01:CDS | 60.0% | |
| TGGGTAGGGTGGGAGTGAGT+AGG | + | Chr5:15360145-15360164 | None:intergenic | 60.0% | |
| TGTCTTCGCGTGGGTAGGGT+GGG | + | Chr5:15360155-15360174 | None:intergenic | 60.0% | |
| ! | GAGGAGGAGCATGCAGTGGT+AGG | + | Chr5:15360340-15360359 | None:intergenic | 60.0% |
| ! | TGACGAGGAGGAGCATGCAG+TGG | + | Chr5:15360344-15360363 | None:intergenic | 60.0% |
| !! | AAACGCACCGGCTACCTCAC+CGG | - | Chr5:15360282-15360301 | MsG0580025210.01.T01:CDS | 60.0% |
| !! | GTTTCCGGCGAGTGTTGACG+AGG | + | Chr5:15360359-15360378 | None:intergenic | 60.0% |
| GTGTCTTCGCGTGGGTAGGG+TGG | + | Chr5:15360156-15360175 | None:intergenic | 65.0% | |
| TTCAGCGGTGGAGTCACCGG+CGG | + | Chr5:15360547-15360566 | None:intergenic | 65.0% | |
| TTCATCGCCATCGTCGGCGC+CGG | - | Chr5:15360234-15360253 | MsG0580025210.01.T01:CDS | 65.0% | |
| ! | GGGGTGTCTTCGCGTGGGTA+GGG | + | Chr5:15360159-15360178 | None:intergenic | 65.0% |
| !! | AGAAGGGGGGTGTCTTCGCG+TGG | + | Chr5:15360165-15360184 | None:intergenic | 65.0% |
| !! | GAAGGGGGGTGTCTTCGCGT+GGG | + | Chr5:15360164-15360183 | None:intergenic | 65.0% |
| !! | TCCGGCGAGTGTTGACGAGG+AGG | + | Chr5:15360356-15360375 | None:intergenic | 65.0% |
| !! | ATCGTCGGCGCCGGCGTTCT+CGG | - | Chr5:15360243-15360262 | MsG0580025210.01.T01:CDS | 70.0% |
| !! | GGGGGTGTCTTCGCGTGGGT+AGG | + | Chr5:15360160-15360179 | None:intergenic | 70.0% |
| !! | GAGAACGCCGGCGCCGACGA+TGG | + | Chr5:15360244-15360263 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 15360114 | 15361391 | 15360114 | ID=MsG0580025210.01;Name=MsG0580025210.01 |
| Chr5 | mRNA | 15360114 | 15361391 | 15360114 | ID=MsG0580025210.01.T01;Parent=MsG0580025210.01;Name=MsG0580025210.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|425 |
| Chr5 | exon | 15360114 | 15361391 | 15360114 | ID=MsG0580025210.01.T01:exon:6232;Parent=MsG0580025210.01.T01 |
| Chr5 | CDS | 15360114 | 15361391 | 15360114 | ID=MsG0580025210.01.T01:cds;Parent=MsG0580025210.01.T01 |
| Gene Sequence |
| Protein sequence |
