Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025212.01.T01 | XP_003612372.1 | 97.412 | 425 | 8 | 1 | 1 | 425 | 1 | 422 | 0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025212.01.T01 | Q9SVG0 | 65.429 | 431 | 139 | 3 | 4 | 424 | 5 | 435 | 0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025212.01.T01 | G7K191 | 97.412 | 425 | 8 | 1 | 1 | 425 | 1 | 422 | 0.0 | 823 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580025210.01 | MsG0580025212.01 | 0.937112 | 5.880683e-98 | 5.227315e-93 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880046268.01 | MsG0580025212.01 | PPI |
| MsG0580025212.01 | MsG0580029129.01 | PPI |
| MsG0780040887.01 | MsG0580025212.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025212.01.T01 | MTR_5g024300 | 97.412 | 425 | 8 | 1 | 1 | 425 | 1 | 422 | 0.0 | 823 |
| MsG0580025212.01.T01 | MTR_8g073340 | 67.241 | 406 | 129 | 1 | 20 | 425 | 12 | 413 | 0.0 | 525 |
| MsG0580025212.01.T01 | MTR_7g107090 | 37.170 | 417 | 229 | 7 | 19 | 417 | 3 | 404 | 1.30e-75 | 241 |
| MsG0580025212.01.T01 | MTR_3g465510 | 25.899 | 417 | 255 | 16 | 31 | 422 | 42 | 429 | 1.97e-17 | 84.3 |
| MsG0580025212.01.T01 | MTR_7g010750 | 27.119 | 413 | 253 | 18 | 32 | 422 | 42 | 428 | 3.39e-17 | 83.6 |
| MsG0580025212.01.T01 | MTR_1g094620 | 24.045 | 445 | 286 | 16 | 4 | 421 | 117 | 536 | 1.02e-16 | 82.8 |
| MsG0580025212.01.T01 | MTR_7g010790 | 26.620 | 432 | 263 | 20 | 18 | 422 | 25 | 429 | 1.22e-16 | 82.0 |
| MsG0580025212.01.T01 | MTR_3g033730 | 26.490 | 453 | 254 | 19 | 10 | 422 | 16 | 429 | 2.08e-16 | 81.3 |
| MsG0580025212.01.T01 | MTR_1g094620 | 24.115 | 452 | 284 | 17 | 4 | 421 | 117 | 543 | 9.45e-16 | 79.7 |
| MsG0580025212.01.T01 | MTR_8g467180 | 24.510 | 408 | 270 | 13 | 31 | 422 | 20 | 405 | 1.02e-14 | 75.9 |
| MsG0580025212.01.T01 | MTR_3g465440 | 25.899 | 417 | 248 | 17 | 31 | 418 | 48 | 432 | 1.11e-14 | 76.6 |
| MsG0580025212.01.T01 | MTR_8g467190 | 25.000 | 408 | 260 | 14 | 35 | 422 | 23 | 404 | 8.96e-14 | 73.2 |
| MsG0580025212.01.T01 | MTR_8g465310 | 24.088 | 411 | 262 | 16 | 34 | 422 | 22 | 404 | 1.88e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025212.01.T01 | AT4G38250 | 65.429 | 431 | 139 | 3 | 4 | 424 | 5 | 435 | 0.0 | 553 |
| MsG0580025212.01.T01 | AT2G42005 | 66.667 | 405 | 129 | 2 | 18 | 420 | 10 | 410 | 0.0 | 541 |
| MsG0580025212.01.T01 | AT5G65990 | 66.504 | 409 | 131 | 2 | 17 | 425 | 25 | 427 | 0.0 | 511 |
| MsG0580025212.01.T01 | AT3G11900 | 36.099 | 446 | 239 | 9 | 1 | 417 | 1 | 429 | 6.00e-74 | 238 |
| MsG0580025212.01.T01 | AT3G11900 | 36.099 | 446 | 239 | 9 | 1 | 417 | 1 | 429 | 6.00e-74 | 238 |
| MsG0580025212.01.T01 | AT5G15240 | 26.484 | 438 | 278 | 15 | 4 | 420 | 5 | 419 | 2.97e-21 | 95.9 |
| MsG0580025212.01.T01 | AT2G41190 | 24.129 | 402 | 276 | 10 | 32 | 421 | 148 | 532 | 4.10e-18 | 87.0 |
| MsG0580025212.01.T01 | AT2G39130 | 24.645 | 422 | 278 | 13 | 19 | 421 | 145 | 545 | 9.99e-18 | 85.9 |
| MsG0580025212.01.T01 | AT2G39130 | 24.645 | 422 | 278 | 13 | 19 | 421 | 145 | 545 | 9.99e-18 | 85.9 |
| MsG0580025212.01.T01 | AT5G02180 | 26.097 | 433 | 271 | 12 | 13 | 420 | 136 | 544 | 6.75e-15 | 77.0 |
| MsG0580025212.01.T01 | AT5G02180 | 26.097 | 433 | 271 | 12 | 13 | 420 | 136 | 544 | 6.75e-15 | 77.0 |
| MsG0580025212.01.T01 | AT3G54830 | 26.287 | 369 | 230 | 12 | 44 | 390 | 163 | 511 | 6.89e-15 | 77.0 |
| MsG0580025212.01.T01 | AT3G54830 | 26.287 | 369 | 230 | 12 | 44 | 390 | 163 | 511 | 6.89e-15 | 77.0 |
| MsG0580025212.01.T01 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 1.01e-14 | 75.9 |
| MsG0580025212.01.T01 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 1.01e-14 | 75.9 |
| MsG0580025212.01.T01 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 1.01e-14 | 75.9 |
| MsG0580025212.01.T01 | AT3G28960 | 25.829 | 422 | 247 | 16 | 31 | 421 | 16 | 402 | 1.01e-14 | 75.9 |
| MsG0580025212.01.T01 | AT2G39130 | 25.620 | 363 | 230 | 13 | 19 | 362 | 145 | 486 | 4.05e-13 | 71.2 |
| MsG0580025212.01.T01 | AT5G15240 | 25.948 | 343 | 218 | 11 | 98 | 420 | 7 | 333 | 9.28e-13 | 69.3 |
| MsG0580025212.01.T01 | AT2G41190 | 24.225 | 355 | 238 | 11 | 32 | 372 | 148 | 485 | 6.14e-11 | 64.7 |
Find 98 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCAAAATAGACCAAATT+TGG | 0.163682 | 5:-15375055 | MsG0580025212.01.T01:CDS |
| ACTAAAGATAAGGAGAAATT+TGG | 0.163880 | 5:-15374937 | MsG0580025212.01.T01:CDS |
| CGGCGAAAAGTTTGTATCTT+TGG | 0.171178 | 5:-15375209 | MsG0580025212.01.T01:CDS |
| CCCTTAAAAGCTTCCAAATT+TGG | 0.173765 | 5:+15375042 | None:intergenic |
| GGTGAGGTGGTTGTTGGTTT+TGG | 0.189587 | 5:-15374671 | MsG0580025212.01.T01:CDS |
| GGATTTGTTGTCGCTGTTTA+TGG | 0.196758 | 5:-15374475 | MsG0580025212.01.T01:CDS |
| AAATACTCAAAGGGGCTAAA+TGG | 0.209190 | 5:+15375139 | None:intergenic |
| AATCAAATCTTTCGGCGATT+TGG | 0.225599 | 5:-15375397 | MsG0580025212.01.T01:CDS |
| GATATTATTACTAATAATTT+AGG | 0.226982 | 5:-15374823 | MsG0580025212.01.T01:CDS |
| GGCGAAAAGTTTGTATCTTT+GGG | 0.249310 | 5:-15375208 | MsG0580025212.01.T01:CDS |
| GCCGTTAAACCGATGAAAAT+AGG | 0.259033 | 5:+15375228 | None:intergenic |
| ATAGGTGTTATGGTTCAATT+AGG | 0.262950 | 5:-15374790 | MsG0580025212.01.T01:CDS |
| ATCGCCGAAAGATTTGATTT+TGG | 0.265782 | 5:+15375401 | None:intergenic |
| ATCAAATCTTTCGGCGATTT+GGG | 0.268793 | 5:-15375396 | MsG0580025212.01.T01:CDS |
| GGTTTCAGATGGGGCAATTA+TGG | 0.276313 | 5:-15374503 | MsG0580025212.01.T01:CDS |
| GCCTGCTTTGTTTCATTGTA+TGG | 0.285431 | 5:-15374557 | MsG0580025212.01.T01:CDS |
| AGTAGTGTTTGTGTTGTTCT+TGG | 0.295665 | 5:-15374589 | MsG0580025212.01.T01:CDS |
| TGTGAGTTTGGTGGCACTTT+TGG | 0.301518 | 5:-15374647 | MsG0580025212.01.T01:CDS |
| CGGTGATGGATTCGAGTTTC+CGG | 0.304307 | 5:+15375430 | None:intergenic |
| GGTATGATTTCTGTATTATT+TGG | 0.310085 | 5:-15374892 | MsG0580025212.01.T01:CDS |
| TCTGTATTATTTGGTGCTTT+TGG | 0.313429 | 5:-15374883 | MsG0580025212.01.T01:CDS |
| ATGATTGTGCTTTCACAAGC+TGG | 0.315652 | 5:-15375330 | MsG0580025212.01.T01:CDS |
| ATCGTCGGCGCCGGCGTTCT+CGG | 0.337782 | 5:-15375558 | MsG0580025212.01.T01:CDS |
| TTCTCCAAAATCAAATCTTT+CGG | 0.360516 | 5:-15375405 | MsG0580025212.01.T01:CDS |
| TTTGAATTGGGAGGAGAGGG+GGG | 0.368849 | 5:+15375605 | None:intergenic |
| CTAAAGATAAGGAGAAATTT+GGG | 0.369672 | 5:-15374936 | MsG0580025212.01.T01:CDS |
| CTAGGTATTGTTTGTGGGTG+AGG | 0.391723 | 5:-15374687 | MsG0580025212.01.T01:CDS |
| TTCTGCTAAGAGTGTTGTTA+TGG | 0.395374 | 5:-15375097 | MsG0580025212.01.T01:CDS |
| TTTGTGGGTGAGGTGGTTGT+TGG | 0.396163 | 5:-15374677 | MsG0580025212.01.T01:CDS |
| GATGATGAATCCTGTTTATG+AGG | 0.399583 | 5:-15374734 | MsG0580025212.01.T01:CDS |
| TTCACCATTTGTGGCCCATT+AGG | 0.399764 | 5:-15375372 | MsG0580025212.01.T01:CDS |
| GAATTCAACCCTAATTGAAA+TGG | 0.405419 | 5:+15375177 | None:intergenic |
| GATTTGGGTTTCACCATTTG+TGG | 0.407357 | 5:-15375381 | MsG0580025212.01.T01:CDS |
| GTGATTCTAGGTATTGTTTG+TGG | 0.411186 | 5:-15374693 | MsG0580025212.01.T01:CDS |
| AAGTTGAAGAAATGAAAATA+AGG | 0.412629 | 5:+15375292 | None:intergenic |
| AATTTAGGTCAAGGTGTGAT+AGG | 0.415141 | 5:-15374808 | MsG0580025212.01.T01:CDS |
| CCGTTAAACCGATGAAAATA+GGG | 0.418409 | 5:+15375229 | None:intergenic |
| AATACTCAAAGGGGCTAAAT+GGG | 0.422180 | 5:+15375140 | None:intergenic |
| TTCAGAGATTCTTTCTCCTA+AGG | 0.423873 | 5:-15374437 | MsG0580025212.01.T01:CDS |
| TGGAGATGCTTGGTTTCAGA+TGG | 0.426094 | 5:-15374514 | MsG0580025212.01.T01:CDS |
| TGATTCTAGGTATTGTTTGT+GGG | 0.427448 | 5:-15374692 | MsG0580025212.01.T01:CDS |
| TCAAGGTGTGATAGGTGTTA+TGG | 0.428573 | 5:-15374800 | MsG0580025212.01.T01:CDS |
| AATCTCTGAAACAGAAGTAT+AGG | 0.439051 | 5:+15374450 | None:intergenic |
| GAGGTAGCCGGTGCGTTTGA+AGG | 0.444851 | 5:+15375524 | None:intergenic |
| CCGGTGCGTTTGAAGGAGTA+AGG | 0.447211 | 5:+15375531 | None:intergenic |
| AGAGTTGGGTTGGAGATGCT+TGG | 0.457507 | 5:-15374524 | MsG0580025212.01.T01:CDS |
| GTGTCTTCGCGTGGGTAGAG+TGG | 0.461687 | 5:+15375648 | None:intergenic |
| GAAAATAGGGACGGTTTCAC+CGG | 0.463787 | 5:+15375242 | None:intergenic |
| TGATTGTGCTTTCACAAGCT+GGG | 0.465440 | 5:-15375329 | MsG0580025212.01.T01:CDS |
| TTCCAAATCAATCAAGCCTT+AGG | 0.468756 | 5:+15374421 | None:intergenic |
| TTGAATTGGGAGGAGAGGGG+GGG | 0.471686 | 5:+15375606 | None:intergenic |
| TGTCTTCGCGTGGGTAGAGT+GGG | 0.472433 | 5:+15375649 | None:intergenic |
| GGAGATGCTTGGTTTCAGAT+GGG | 0.475884 | 5:-15374513 | MsG0580025212.01.T01:CDS |
| TAGGTGTTATGGTTCAATTA+GGG | 0.480288 | 5:-15374789 | MsG0580025212.01.T01:CDS |
| AGCTTGTGAAAGCACAATCA+TGG | 0.488957 | 5:+15375332 | None:intergenic |
| TTCATCGCCATCGTCGGCGC+CGG | 0.491063 | 5:-15375567 | MsG0580025212.01.T01:CDS |
| GATGAGACCGGTGAGGTAGC+CGG | 0.501029 | 5:+15375512 | None:intergenic |
| ATTACTAATAATTTAGGTCA+AGG | 0.502446 | 5:-15374817 | MsG0580025212.01.T01:CDS |
| ACGGCCTAATGGGCCACAAA+TGG | 0.508734 | 5:+15375368 | None:intergenic |
| GGGGTGATTTAGTAAGAAGG+GGG | 0.509539 | 5:+15375625 | None:intergenic |
| GGTTTCACCGGTGGAGTCAC+CGG | 0.519639 | 5:+15375254 | None:intergenic |
| GGCGATGAAGATGTTGGCGC+AGG | 0.529083 | 5:+15375581 | None:intergenic |
| AACATGGTGTTCAAAGAAGC+AGG | 0.533056 | 5:-15375690 | MsG0580025212.01.T01:CDS |
| GGAAAGTGAGACTAAAGATA+AGG | 0.539952 | 5:-15374947 | MsG0580025212.01.T01:CDS |
| AACATCTTCATCGCCATCGT+CGG | 0.542040 | 5:-15375573 | MsG0580025212.01.T01:CDS |
| AAACGCACCGGCTACCTCAC+CGG | 0.545253 | 5:-15375519 | MsG0580025212.01.T01:CDS |
| TAAACAGGATTCATCATCAA+AGG | 0.546520 | 5:+15374739 | None:intergenic |
| GGTATTGTTTGTGGGTGAGG+TGG | 0.548580 | 5:-15374684 | MsG0580025212.01.T01:CDS |
| TCCTCCTCGTCAACACTCGC+CGG | 0.555101 | 5:-15375449 | MsG0580025212.01.T01:CDS |
| ACTTTATCATTTCTCACCGC+CGG | 0.560571 | 5:-15375273 | MsG0580025212.01.T01:CDS |
| GGCGAAGAGGTTGATGAGAC+CGG | 0.560917 | 5:+15375500 | None:intergenic |
| GGGTGATTTAGTAAGAAGGG+GGG | 0.563619 | 5:+15375626 | None:intergenic |
| TCTTTAGTCTCACTTTCCAA+AGG | 0.564288 | 5:+15374952 | None:intergenic |
| GAGATGCTTGGTTTCAGATG+GGG | 0.565266 | 5:-15374512 | MsG0580025212.01.T01:CDS |
| TGCTAAGAGTGTTGTTATGG+TGG | 0.568588 | 5:-15375094 | MsG0580025212.01.T01:CDS |
| ACCATACAATGAAACAAAGC+AGG | 0.572774 | 5:+15374556 | None:intergenic |
| TGGGTAGAGTGGGAGTGAGT+AGG | 0.573879 | 5:+15375659 | None:intergenic |
| AGATAAGGAGAAATTTGGGA+GGG | 0.580185 | 5:-15374932 | MsG0580025212.01.T01:CDS |
| GAGGAGGAGCATGCAGTGGT+AGG | 0.580282 | 5:+15375464 | None:intergenic |
| GCGAAAAGTTTGTATCTTTG+GGG | 0.582000 | 5:-15375207 | MsG0580025212.01.T01:CDS |
| GAGAACGCCGGCGCCGACGA+TGG | 0.586591 | 5:+15375560 | None:intergenic |
| GACGATGGCGATGAAGATGT+TGG | 0.595120 | 5:+15375575 | None:intergenic |
| CCTTACTCCTTCAAACGCAC+CGG | 0.595955 | 5:-15375531 | MsG0580025212.01.T01:CDS |
| CGGAAACTCGAATCCATCAC+CGG | 0.599755 | 5:-15375429 | MsG0580025212.01.T01:CDS |
| CTCACCGCCGGTGACTCCAC+CGG | 0.608907 | 5:-15375261 | MsG0580025212.01.T01:CDS |
| GGAGCATGCAGTGGTAGGTG+AGG | 0.612235 | 5:+15375469 | None:intergenic |
| CGGTGCGTTTGAAGGAGTAA+GGG | 0.615815 | 5:+15375532 | None:intergenic |
| AATAGGGACGGTTTCACCGG+TGG | 0.617887 | 5:+15375245 | None:intergenic |
| GTAAGGGAGACCGAGAACGC+CGG | 0.630022 | 5:+15375548 | None:intergenic |
| TCCGGCGAGTGTTGACGAGG+AGG | 0.631211 | 5:+15375448 | None:intergenic |
| GTGGTAGGTGAGGTAAGCGA+TGG | 0.634247 | 5:+15375479 | None:intergenic |
| TGAGGTAAGCGATGGCGAAG+AGG | 0.640064 | 5:+15375487 | None:intergenic |
| GTTTCCGGCGAGTGTTGACG+AGG | 0.647193 | 5:+15375445 | None:intergenic |
| AAGATAAGGAGAAATTTGGG+AGG | 0.647666 | 5:-15374933 | MsG0580025212.01.T01:CDS |
| TAAACCGATGAAAATAGGGA+CGG | 0.664104 | 5:+15375233 | None:intergenic |
| TGACGAGGAGGAGCATGCAG+TGG | 0.678520 | 5:+15375460 | None:intergenic |
| TTCACCGGTGGAGTCACCGG+CGG | 0.683260 | 5:+15375257 | None:intergenic |
| AGAGGTTGATGAGACCGGTG+AGG | 0.727750 | 5:+15375505 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTATTACTAATAATTT+AGG | - | Chr5:15375296-15375315 | MsG0580025212.01.T01:CDS | 10.0% |
| !! | AAGTTGAAGAAATGAAAATA+AGG | + | Chr5:15374830-15374849 | None:intergenic | 20.0% |
| !! | ATTACTAATAATTTAGGTCA+AGG | - | Chr5:15375302-15375321 | MsG0580025212.01.T01:CDS | 20.0% |
| ! | ACTAAAGATAAGGAGAAATT+TGG | - | Chr5:15375182-15375201 | MsG0580025212.01.T01:CDS | 25.0% |
| ! | CTAAAGATAAGGAGAAATTT+GGG | - | Chr5:15375183-15375202 | MsG0580025212.01.T01:CDS | 25.0% |
| ! | GACAAAAAATCAGCAAAATT+TGG | + | Chr5:15375500-15375519 | None:intergenic | 25.0% |
| ! | GGTATGATTTCTGTATTATT+TGG | - | Chr5:15375227-15375246 | MsG0580025212.01.T01:CDS | 25.0% |
| ! | TTCTCCAAAATCAAATCTTT+CGG | - | Chr5:15374714-15374733 | MsG0580025212.01.T01:CDS | 25.0% |
| !! | GTTTCATTGTATGGTTTTTA+AGG | - | Chr5:15375571-15375590 | MsG0580025212.01.T01:CDS | 25.0% |
| !!! | GTTGTTTTCCATTTCAATTA+GGG | - | Chr5:15374934-15374953 | MsG0580025212.01.T01:CDS | 25.0% |
| !!! | GTTTTAGGTTATTTTGCTTT+TGG | - | Chr5:15375260-15375279 | MsG0580025212.01.T01:CDS | 25.0% |
| ACATCAGCAAAAATACTCAA+AGG | + | Chr5:15374993-15375012 | None:intergenic | 30.0% | |
| ATCAGCAAAAATACTCAAAG+GGG | + | Chr5:15374991-15375010 | None:intergenic | 30.0% | |
| CATCAGCAAAAATACTCAAA+GGG | + | Chr5:15374992-15375011 | None:intergenic | 30.0% | |
| CATGCAAAATAGACCAAATT+TGG | - | Chr5:15375064-15375083 | MsG0580025212.01.T01:CDS | 30.0% | |
| GAATTCAACCCTAATTGAAA+TGG | + | Chr5:15374945-15374964 | None:intergenic | 30.0% | |
| TAAACAGGATTCATCATCAA+AGG | + | Chr5:15375383-15375402 | None:intergenic | 30.0% | |
| ! | ACCAAATTTGGAAGCTTTTA+AGG | - | Chr5:15375076-15375095 | MsG0580025212.01.T01:CDS | 30.0% |
| ! | ATAGGTGTTATGGTTCAATT+AGG | - | Chr5:15375329-15375348 | MsG0580025212.01.T01:CDS | 30.0% |
| ! | CCAAATTTGGAAGCTTTTAA+GGG | - | Chr5:15375077-15375096 | MsG0580025212.01.T01:CDS | 30.0% |
| ! | TAGGTGTTATGGTTCAATTA+GGG | - | Chr5:15375330-15375349 | MsG0580025212.01.T01:CDS | 30.0% |
| ! | TGATTCTAGGTATTGTTTGT+GGG | - | Chr5:15375427-15375446 | MsG0580025212.01.T01:CDS | 30.0% |
| !! | AATCTCTGAAACAGAAGTAT+AGG | + | Chr5:15375672-15375691 | None:intergenic | 30.0% |
| !! | AGATTTGATTTTGGAGAAAC+CGG | + | Chr5:15374712-15374731 | None:intergenic | 30.0% |
| !! | ATGGTTTTTAAGGAAGAGTT+GGG | - | Chr5:15375581-15375600 | MsG0580025212.01.T01:CDS | 30.0% |
| !! | GGTTGTTTTCCATTTCAATT+AGG | - | Chr5:15374933-15374952 | MsG0580025212.01.T01:CDS | 30.0% |
| !! | GTTTATGCTTTTGAAGGAAT+TGG | - | Chr5:15375134-15375153 | MsG0580025212.01.T01:CDS | 30.0% |
| !! | TATGGTTTTTAAGGAAGAGT+TGG | - | Chr5:15375580-15375599 | MsG0580025212.01.T01:CDS | 30.0% |
| !! | TTTATGAGGTTTTTGAGAGA+AGG | - | Chr5:15375399-15375418 | MsG0580025212.01.T01:CDS | 30.0% |
| !!! | GGTGTTTTTTTCTATGGTAT+TGG | - | Chr5:15375104-15375123 | MsG0580025212.01.T01:CDS | 30.0% |
| !!! | GGTTTTGGTGTTTTTTTCTA+TGG | - | Chr5:15375098-15375117 | MsG0580025212.01.T01:CDS | 30.0% |
| !!! | TCTGTATTATTTGGTGCTTT+TGG | - | Chr5:15375236-15375255 | MsG0580025212.01.T01:CDS | 30.0% |
| AAATACTCAAAGGGGCTAAA+TGG | + | Chr5:15374983-15375002 | None:intergenic | 35.0% | |
| AAGATAAGGAGAAATTTGGG+AGG | - | Chr5:15375186-15375205 | MsG0580025212.01.T01:CDS | 35.0% | |
| AATACTCAAAGGGGCTAAAT+GGG | + | Chr5:15374982-15375001 | None:intergenic | 35.0% | |
| AATCAAATCTTTCGGCGATT+TGG | - | Chr5:15374722-15374741 | MsG0580025212.01.T01:CDS | 35.0% | |
| AATTTAGGTCAAGGTGTGAT+AGG | - | Chr5:15375311-15375330 | MsG0580025212.01.T01:CDS | 35.0% | |
| ACCATACAATGAAACAAAGC+AGG | + | Chr5:15375566-15375585 | None:intergenic | 35.0% | |
| AGATAAGGAGAAATTTGGGA+GGG | - | Chr5:15375187-15375206 | MsG0580025212.01.T01:CDS | 35.0% | |
| ATCAAATCTTTCGGCGATTT+GGG | - | Chr5:15374723-15374742 | MsG0580025212.01.T01:CDS | 35.0% | |
| CCCTTAAAAGCTTCCAAATT+TGG | + | Chr5:15375080-15375099 | None:intergenic | 35.0% | |
| CCGTTAAACCGATGAAAATA+GGG | + | Chr5:15374893-15374912 | None:intergenic | 35.0% | |
| CTCTCAAAAACCTCATAAAC+AGG | + | Chr5:15375398-15375417 | None:intergenic | 35.0% | |
| GATGATGAATCCTGTTTATG+AGG | - | Chr5:15375385-15375404 | MsG0580025212.01.T01:CDS | 35.0% | |
| GCGAAAAGTTTGTATCTTTG+GGG | - | Chr5:15374912-15374931 | MsG0580025212.01.T01:CDS | 35.0% | |
| GGAAAGTGAGACTAAAGATA+AGG | - | Chr5:15375172-15375191 | MsG0580025212.01.T01:CDS | 35.0% | |
| GGCGAAAAGTTTGTATCTTT+GGG | - | Chr5:15374911-15374930 | MsG0580025212.01.T01:CDS | 35.0% | |
| TAAACCGATGAAAATAGGGA+CGG | + | Chr5:15374889-15374908 | None:intergenic | 35.0% | |
| TCATGGAGTCAACTGAAAAA+CGG | + | Chr5:15374773-15374792 | None:intergenic | 35.0% | |
| TCTTTAGTCTCACTTTCCAA+AGG | + | Chr5:15375170-15375189 | None:intergenic | 35.0% | |
| TTCAGAGATTCTTTCTCCTA+AGG | - | Chr5:15375682-15375701 | MsG0580025212.01.T01:CDS | 35.0% | |
| ! | AGAAATTTGGGAGGGTTTTA+GGG | - | Chr5:15375195-15375214 | MsG0580025212.01.T01:CDS | 35.0% |
| ! | AGTAGTGTTTGTGTTGTTCT+TGG | - | Chr5:15375530-15375549 | MsG0580025212.01.T01:CDS | 35.0% |
| ! | GTAGCTGTTTATGCTTTTGA+AGG | - | Chr5:15375128-15375147 | MsG0580025212.01.T01:CDS | 35.0% |
| ! | GTGATTCTAGGTATTGTTTG+TGG | - | Chr5:15375426-15375445 | MsG0580025212.01.T01:CDS | 35.0% |
| ! | TGCTTTTGGTGAAGAAACTA+AGG | - | Chr5:15375274-15375293 | MsG0580025212.01.T01:CDS | 35.0% |
| !! | AATTGGAATGGTTTTGCCTT+TGG | - | Chr5:15375151-15375170 | MsG0580025212.01.T01:CDS | 35.0% |
| !! | AGAGAAGGTTTTGTGATTCT+AGG | - | Chr5:15375414-15375433 | MsG0580025212.01.T01:CDS | 35.0% |
| !! | ATCGCCGAAAGATTTGATTT+TGG | + | Chr5:15374721-15374740 | None:intergenic | 35.0% |
| !! | TGCTTTTGAAGGAATTGGAA+TGG | - | Chr5:15375139-15375158 | MsG0580025212.01.T01:CDS | 35.0% |
| !! | TTCTGCTAAGAGTGTTGTTA+TGG | - | Chr5:15375022-15375041 | MsG0580025212.01.T01:CDS | 35.0% |
| !! | TTGGAAGCTTTTAAGGGTTT+TGG | - | Chr5:15375083-15375102 | MsG0580025212.01.T01:CDS | 35.0% |
| !! | TTTTTAAGGAAGAGTTGGGT+TGG | - | Chr5:15375585-15375604 | MsG0580025212.01.T01:CDS | 35.0% |
| !!! | CCCTATTTTCATCGGTTTAA+CGG | - | Chr5:15374890-15374909 | MsG0580025212.01.T01:CDS | 35.0% |
| !!! | GCTGATTTTTTGTCACTTGT+TGG | - | Chr5:15375506-15375525 | MsG0580025212.01.T01:CDS | 35.0% |
| !!! | TTTGGTGCTTTTGGTGTTTT+AGG | - | Chr5:15375245-15375264 | MsG0580025212.01.T01:CDS | 35.0% |
| ACTTTATCATTTCTCACCGC+CGG | - | Chr5:15374846-15374865 | MsG0580025212.01.T01:CDS | 40.0% | |
| ATGATTGTGCTTTCACAAGC+TGG | - | Chr5:15374789-15374808 | MsG0580025212.01.T01:CDS | 40.0% | |
| CAACTGAAAAACGGCCTAAT+GGG | + | Chr5:15374764-15374783 | None:intergenic | 40.0% | |
| CGGCGAAAAGTTTGTATCTT+TGG | - | Chr5:15374910-15374929 | MsG0580025212.01.T01:CDS | 40.0% | |
| GCCGTTAAACCGATGAAAAT+AGG | + | Chr5:15374894-15374913 | None:intergenic | 40.0% | |
| TCAACTGAAAAACGGCCTAA+TGG | + | Chr5:15374765-15374784 | None:intergenic | 40.0% | |
| TCAAGGTGTGATAGGTGTTA+TGG | - | Chr5:15375319-15375338 | MsG0580025212.01.T01:CDS | 40.0% | |
| TGATTGTGCTTTCACAAGCT+GGG | - | Chr5:15374790-15374809 | MsG0580025212.01.T01:CDS | 40.0% | |
| ! | AGCTTGTGAAAGCACAATCA+TGG | + | Chr5:15374790-15374809 | None:intergenic | 40.0% |
| ! | GAAACCGTCCCTATTTTCAT+CGG | - | Chr5:15374882-15374901 | MsG0580025212.01.T01:CDS | 40.0% |
| ! | GAGAAATTTGGGAGGGTTTT+AGG | - | Chr5:15375194-15375213 | MsG0580025212.01.T01:CDS | 40.0% |
| ! | GATGGGGCAATTATGGTTTT+TGG | - | Chr5:15375623-15375642 | MsG0580025212.01.T01:CDS | 40.0% |
| ! | GATTTGGGTTTCACCATTTG+TGG | - | Chr5:15374738-15374757 | MsG0580025212.01.T01:CDS | 40.0% |
| !! | GCCTGCTTTGTTTCATTGTA+TGG | - | Chr5:15375562-15375581 | MsG0580025212.01.T01:CDS | 40.0% |
| !! | GGATTTGTTGTCGCTGTTTA+TGG | - | Chr5:15375644-15375663 | MsG0580025212.01.T01:CDS | 40.0% |
| !! | TGCTAAGAGTGTTGTTATGG+TGG | - | Chr5:15375025-15375044 | MsG0580025212.01.T01:CDS | 40.0% |
| !!! | GTTGGTTTTGGTTGTGAGTT+TGG | - | Chr5:15375460-15375479 | MsG0580025212.01.T01:CDS | 40.0% |
| AACATCTTCATCGCCATCGT+CGG | - | Chr5:15374546-15374565 | MsG0580025212.01.T01:CDS | 45.0% | |
| GAAAATAGGGACGGTTTCAC+CGG | + | Chr5:15374880-15374899 | None:intergenic | 45.0% | |
| GAGATGCTTGGTTTCAGATG+GGG | - | Chr5:15375607-15375626 | MsG0580025212.01.T01:CDS | 45.0% | |
| GGAGATGCTTGGTTTCAGAT+GGG | - | Chr5:15375606-15375625 | MsG0580025212.01.T01:CDS | 45.0% | |
| GGGGGGTGATTTAGTAAGAA+GGG | + | Chr5:15374499-15374518 | None:intergenic | 45.0% | |
| GGGGGTGATTTAGTAAGAAG+GGG | + | Chr5:15374498-15374517 | None:intergenic | 45.0% | |
| GGGGTGATTTAGTAAGAAGG+GGG | + | Chr5:15374497-15374516 | None:intergenic | 45.0% | |
| GGGTGATTTAGTAAGAAGGG+GGG | + | Chr5:15374496-15374515 | None:intergenic | 45.0% | |
| GGTTTCAGATGGGGCAATTA+TGG | - | Chr5:15375616-15375635 | MsG0580025212.01.T01:CDS | 45.0% | |
| TGGAGATGCTTGGTTTCAGA+TGG | - | Chr5:15375605-15375624 | MsG0580025212.01.T01:CDS | 45.0% | |
| TTCACCATTTGTGGCCCATT+AGG | - | Chr5:15374747-15374766 | MsG0580025212.01.T01:CDS | 45.0% | |
| ! | CTAGGTATTGTTTGTGGGTG+AGG | - | Chr5:15375432-15375451 | MsG0580025212.01.T01:CDS | 45.0% |
| ! | TTTTGAATTGGGAGGAGAGG+GGG | + | Chr5:15374518-15374537 | None:intergenic | 45.0% |
| !! | GATTTTGGAGAAACCGGTGA+TGG | + | Chr5:15374706-15374725 | None:intergenic | 45.0% |
| !! | GTTTTGAATTGGGAGGAGAG+GGG | + | Chr5:15374519-15374538 | None:intergenic | 45.0% |
| !! | TGTGAGTTTGGTGGCACTTT+TGG | - | Chr5:15375472-15375491 | MsG0580025212.01.T01:CDS | 45.0% |
| !!! | AGGGTTTTAGGGTTAGGGAT+GGG | - | Chr5:15375206-15375225 | MsG0580025212.01.T01:CDS | 45.0% |
| !!! | AGGTTTTGAATTGGGAGGAG+AGG | + | Chr5:15374521-15374540 | None:intergenic | 45.0% |
| !!! | GGTTTTGAATTGGGAGGAGA+GGG | + | Chr5:15374520-15374539 | None:intergenic | 45.0% |
| !!! | GGTTTTGGTTGTGAGTTTGG+TGG | - | Chr5:15375463-15375482 | MsG0580025212.01.T01:CDS | 45.0% |
| !!! | GTTGGCGCAGGTTTTGAATT+GGG | + | Chr5:15374529-15374548 | None:intergenic | 45.0% |
| !!! | TGTTGGCGCAGGTTTTGAAT+TGG | + | Chr5:15374530-15374549 | None:intergenic | 45.0% |
| !!! | TTGGGAGGGTTTTAGGGTTA+GGG | - | Chr5:15375201-15375220 | MsG0580025212.01.T01:CDS | 45.0% |
| !!! | TTTGGGAGGGTTTTAGGGTT+AGG | - | Chr5:15375200-15375219 | MsG0580025212.01.T01:CDS | 45.0% |
| CCTTACTCCTTCAAACGCAC+CGG | - | Chr5:15374588-15374607 | MsG0580025212.01.T01:CDS | 50.0% | |
| CGGAAACTCGAATCCATCAC+CGG | - | Chr5:15374690-15374709 | MsG0580025212.01.T01:CDS | 50.0% | |
| CGGTGCGTTTGAAGGAGTAA+GGG | + | Chr5:15374590-15374609 | None:intergenic | 50.0% | |
| GACGATGGCGATGAAGATGT+TGG | + | Chr5:15374547-15374566 | None:intergenic | 50.0% | |
| GGGGGGGTGATTTAGTAAGA+AGG | + | Chr5:15374500-15374519 | None:intergenic | 50.0% | |
| GGTATTGTTTGTGGGTGAGG+TGG | - | Chr5:15375435-15375454 | MsG0580025212.01.T01:CDS | 50.0% | |
| TTTGAATTGGGAGGAGAGGG+GGG | + | Chr5:15374517-15374536 | None:intergenic | 50.0% | |
| TTTGTGGGTGAGGTGGTTGT+TGG | - | Chr5:15375442-15375461 | MsG0580025212.01.T01:CDS | 50.0% | |
| !! | AGAGTTGGGTTGGAGATGCT+TGG | - | Chr5:15375595-15375614 | MsG0580025212.01.T01:CDS | 50.0% |
| !! | CGGTGATGGATTCGAGTTTC+CGG | + | Chr5:15374692-15374711 | None:intergenic | 50.0% |
| !!! | GAGGGTTTTAGGGTTAGGGA+TGG | - | Chr5:15375205-15375224 | MsG0580025212.01.T01:CDS | 50.0% |
| !!! | GGTGAGGTGGTTGTTGGTTT+TGG | - | Chr5:15375448-15375467 | MsG0580025212.01.T01:CDS | 50.0% |
| AATAGGGACGGTTTCACCGG+TGG | + | Chr5:15374877-15374896 | None:intergenic | 55.0% | |
| CCGGTGCGTTTGAAGGAGTA+AGG | + | Chr5:15374591-15374610 | None:intergenic | 55.0% | |
| GTGGTAGGTGAGGTAAGCGA+TGG | + | Chr5:15374643-15374662 | None:intergenic | 55.0% | |
| TGAGGTAAGCGATGGCGAAG+AGG | + | Chr5:15374635-15374654 | None:intergenic | 55.0% | |
| TGGGTAGAGTGGGAGTGAGT+AGG | + | Chr5:15374463-15374482 | None:intergenic | 55.0% | |
| TGTCTTCGCGTGGGTAGAGT+GGG | + | Chr5:15374473-15374492 | None:intergenic | 55.0% | |
| TTGAATTGGGAGGAGAGGGG+GGG | + | Chr5:15374516-15374535 | None:intergenic | 55.0% | |
| ! | ACGGCCTAATGGGCCACAAA+TGG | + | Chr5:15374754-15374773 | None:intergenic | 55.0% |
| !! | AGAGGTTGATGAGACCGGTG+AGG | + | Chr5:15374617-15374636 | None:intergenic | 55.0% |
| !! | GGCGAAGAGGTTGATGAGAC+CGG | + | Chr5:15374622-15374641 | None:intergenic | 55.0% |
| !!! | GGCGCAGGTTTTGAATTGGG+AGG | + | Chr5:15374526-15374545 | None:intergenic | 55.0% |
| GAGGTAGCCGGTGCGTTTGA+AGG | + | Chr5:15374598-15374617 | None:intergenic | 60.0% | |
| GATGAGACCGGTGAGGTAGC+CGG | + | Chr5:15374610-15374629 | None:intergenic | 60.0% | |
| GGAGCATGCAGTGGTAGGTG+AGG | + | Chr5:15374653-15374672 | None:intergenic | 60.0% | |
| GGCGATGAAGATGTTGGCGC+AGG | + | Chr5:15374541-15374560 | None:intergenic | 60.0% | |
| GGTTTCACCGGTGGAGTCAC+CGG | + | Chr5:15374868-15374887 | None:intergenic | 60.0% | |
| GTAAGGGAGACCGAGAACGC+CGG | + | Chr5:15374574-15374593 | None:intergenic | 60.0% | |
| GTGTCTTCGCGTGGGTAGAG+TGG | + | Chr5:15374474-15374493 | None:intergenic | 60.0% | |
| TCCTCCTCGTCAACACTCGC+CGG | - | Chr5:15374670-15374689 | MsG0580025212.01.T01:CDS | 60.0% | |
| ! | GAGGAGGAGCATGCAGTGGT+AGG | + | Chr5:15374658-15374677 | None:intergenic | 60.0% |
| ! | TGACGAGGAGGAGCATGCAG+TGG | + | Chr5:15374662-15374681 | None:intergenic | 60.0% |
| !! | AAACGCACCGGCTACCTCAC+CGG | - | Chr5:15374600-15374619 | MsG0580025212.01.T01:CDS | 60.0% |
| !! | GTTTCCGGCGAGTGTTGACG+AGG | + | Chr5:15374677-15374696 | None:intergenic | 60.0% |
| TTCACCGGTGGAGTCACCGG+CGG | + | Chr5:15374865-15374884 | None:intergenic | 65.0% | |
| TTCATCGCCATCGTCGGCGC+CGG | - | Chr5:15374552-15374571 | MsG0580025212.01.T01:CDS | 65.0% | |
| !! | AGAAGGGGGGTGTCTTCGCG+TGG | + | Chr5:15374483-15374502 | None:intergenic | 65.0% |
| !! | GAAGGGGGGTGTCTTCGCGT+GGG | + | Chr5:15374482-15374501 | None:intergenic | 65.0% |
| !! | TCCGGCGAGTGTTGACGAGG+AGG | + | Chr5:15374674-15374693 | None:intergenic | 65.0% |
| CTCACCGCCGGTGACTCCAC+CGG | - | Chr5:15374858-15374877 | MsG0580025212.01.T01:CDS | 70.0% | |
| !! | ATCGTCGGCGCCGGCGTTCT+CGG | - | Chr5:15374561-15374580 | MsG0580025212.01.T01:CDS | 70.0% |
| !! | GAGAACGCCGGCGCCGACGA+TGG | + | Chr5:15374562-15374581 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 15374432 | 15375709 | 15374432 | ID=MsG0580025212.01;Name=MsG0580025212.01 |
| Chr5 | mRNA | 15374432 | 15375709 | 15374432 | ID=MsG0580025212.01.T01;Parent=MsG0580025212.01;Name=MsG0580025212.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|425 |
| Chr5 | exon | 15374432 | 15375709 | 15374432 | ID=MsG0580025212.01.T01:exon:6235;Parent=MsG0580025212.01.T01 |
| Chr5 | CDS | 15374432 | 15375709 | 15374432 | ID=MsG0580025212.01.T01:cds;Parent=MsG0580025212.01.T01 |
| Gene Sequence |
| Protein sequence |
