AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029238.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029238.01.T01 MTR_5g083210 95.510 245 11 0 1 245 1 245 2.39e-177 487
MsG0580029238.01.T01 MTR_4g093250 72.289 249 65 2 1 245 1 249 5.17e-122 348
MsG0580029238.01.T01 MTR_2g009720 59.917 242 96 1 1 242 2 242 9.92e-101 293
MsG0580029238.01.T01 MTR_2g009720 60.377 212 83 1 1 212 2 212 7.35e-87 258
MsG0580029238.01.T01 MTR_5g078650 69.231 52 16 0 38 89 49 100 7.21e-16 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029238.01.T01 AT2G23970 48.548 241 120 1 6 242 5 245 5.08e-84 251
MsG0580029238.01.T01 AT4G30550 44.813 241 128 1 7 242 8 248 2.72e-77 234
MsG0580029238.01.T01 AT4G30540 47.059 238 124 1 7 242 6 243 8.13e-75 228
MsG0580029238.01.T01 AT4G30530 41.079 241 138 1 6 242 4 244 1.59e-68 211
MsG0580029238.01.T01 AT2G23960 41.909 241 136 1 6 242 4 244 5.53e-68 210
MsG0580029238.01.T01 AT2G23960 43.458 214 117 1 6 215 4 217 1.29e-60 190

Find 61 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATGCATGGAGGGTATTT+TGG 0.139894 5:-94173617 MsG0580029238.01.T01:CDS
TAAATATGGAGATCATATTT+TGG 0.165205 5:-94170126 MsG0580029238.01.T01:CDS
CTACGTGATAATGGAGAAAA+TGG 0.180350 5:-94173693 None:intergenic
CTCTTCCAGGCATTTGTATC+TGG 0.247583 5:+94169153 None:intergenic
GGAATTGAGATGTTTAAATA+TGG 0.288117 5:-94170140 MsG0580029238.01.T01:CDS
AAATCCATTCTTGAGAAAAC+TGG 0.336448 5:+94169122 None:intergenic
AAAATCCTTGGCATTTGCTT+TGG 0.377857 5:-94173395 MsG0580029238.01.T01:CDS
ACTGGTGCAAAGTCTCTTCC+AGG 0.383119 5:+94169140 None:intergenic
TCGATTATAGAAAGCTTTGT+TGG 0.391349 5:+94170339 None:intergenic
AAAATGGGTTCGAAGAGATT+TGG 0.394261 5:-94173677 MsG0580029238.01.T01:CDS
GGTAGTTGCAATGATGCTTA+TGG 0.400890 5:-94173479 MsG0580029238.01.T01:CDS
AAGGTACTTGGCCGTGCATT+GGG 0.412227 5:-94170453 MsG0580029238.01.T01:CDS
TGGCATTTGCTTTGGCCACC+AGG 0.426626 5:-94173387 MsG0580029238.01.T01:intron
ATGCTTATGGAAATGAGAAA+TGG 0.439165 5:-94173466 MsG0580029238.01.T01:CDS
TGGGGTATTCTTGAAAATGT+TGG 0.442512 5:-94173597 MsG0580029238.01.T01:CDS
CCGTGCATTGGGAGGAAAGG+TGG 0.444436 5:-94170442 MsG0580029238.01.T01:CDS
TTTGGGAATTCAAGGTCATC+CGG 0.454621 5:-94170108 MsG0580029238.01.T01:CDS
TCTCCTACTGGTTGGGACAT+TGG 0.456529 5:-94170414 MsG0580029238.01.T01:CDS
TAAGGTACTTGGCCGTGCAT+TGG 0.466217 5:-94170454 MsG0580029238.01.T01:intron
GGGTCGCTCTCCTACTGGTT+GGG 0.466637 5:-94170421 MsG0580029238.01.T01:CDS
AGACTCAACTCATCATCCTT+AGG 0.471374 5:+94173524 None:intergenic
ATCATGTTTGATAAGGTACT+TGG 0.487889 5:-94170465 MsG0580029238.01.T01:intron
GCAATTACCTCTGCCTTAGC+AGG 0.488420 5:+94170179 None:intergenic
TATGATGGGTTTGTGATCAC+TGG 0.491412 5:-94173500 MsG0580029238.01.T01:CDS
TTGCTATAGGAGCAAGGGAG+AGG 0.492692 5:-94169191 MsG0580029238.01.T01:CDS
TTTCTATAATCGAATGTCAC+AGG 0.494866 5:-94170329 MsG0580029238.01.T01:CDS
TGGTGTGTTGTTATGTGCTG+AGG 0.501318 5:-94173657 MsG0580029238.01.T01:CDS
AAGGTGGGTCGCTCTCCTAC+TGG 0.509740 5:-94170426 MsG0580029238.01.T01:CDS
GATGAGTTGAGTCTTTATGA+TGG 0.518930 5:-94173515 MsG0580029238.01.T01:CDS
GATACAAGAGTTACCTGCTA+AGG 0.520008 5:-94170192 MsG0580029238.01.T01:CDS
TGGGTCGCTCTCCTACTGGT+TGG 0.526632 5:-94170422 MsG0580029238.01.T01:CDS
GGTATTCTTGAAAATGTTGG+AGG 0.537016 5:-94173594 MsG0580029238.01.T01:CDS
ATGAGTTGAGTCTTTATGAT+GGG 0.544846 5:-94173514 MsG0580029238.01.T01:CDS
TGCTATAGGAGCAAGGGAGA+GGG 0.545447 5:-94169190 MsG0580029238.01.T01:CDS
CGTGCATTGGGAGGAAAGGT+GGG 0.545529 5:-94170441 MsG0580029238.01.T01:CDS
ATTGCTAGGTCAGATAAGAC+TGG 0.554445 5:-94170161 MsG0580029238.01.T01:CDS
TAGAGCCAGATACAAATGCC+TGG 0.563834 5:-94169158 MsG0580029238.01.T01:CDS
TTCATGTGGAGAGTTTCCTA+AGG 0.566836 5:-94173540 MsG0580029238.01.T01:CDS
AATCGAATGTCACAGGGATG+AGG 0.572822 5:-94170322 MsG0580029238.01.T01:intron
GAAGGGAAACAAATATGTGA+TGG 0.575220 5:+94170372 None:intergenic
CATCCAACGTAATTTCATCA+AGG 0.575767 5:-94170045 MsG0580029238.01.T01:intron
TACGTGATAATGGAGAAAAT+GGG 0.581288 5:-94173692 None:intergenic
CCACCTTTCCTCCCAATGCA+CGG 0.582342 5:+94170442 None:intergenic
TTTGTTGGAAGATCAAGAGA+AGG 0.582547 5:+94170354 None:intergenic
AGAATATCTTTAGAGTACTC+CGG 0.594538 5:+94170089 None:intergenic
TGGCCGTGCATTGGGAGGAA+AGG 0.597120 5:-94170445 MsG0580029238.01.T01:CDS
CTAAGGCAGAGGTAATTGCT+AGG 0.598401 5:-94170175 MsG0580029238.01.T01:CDS
TTGTTGGAAGATCAAGAGAA+GGG 0.600896 5:+94170355 None:intergenic
ATACCTTGATGAAATTACGT+TGG 0.603079 5:+94170042 None:intergenic
ATGTGATAAAGATGCATGGA+GGG 0.610169 5:-94173625 MsG0580029238.01.T01:CDS
ATTTCTTAATCAATGTGACA+AGG 0.618688 5:+94173435 None:intergenic
AGAGTTACCTGCTAAGGCAG+AGG 0.620834 5:-94170186 MsG0580029238.01.T01:CDS
TTCTATAATCGAATGTCACA+GGG 0.622205 5:-94170328 MsG0580029238.01.T01:CDS
GTACTTGGCCGTGCATTGGG+AGG 0.623886 5:-94170450 MsG0580029238.01.T01:CDS
TGGAGGAAGAAAATGAGACA+TGG 0.626432 5:-94173577 MsG0580029238.01.T01:CDS
GAGTATGTGATAAAGATGCA+TGG 0.626622 5:-94173629 MsG0580029238.01.T01:CDS
GGAGGAAGAAAATGAGACAT+GGG 0.638380 5:-94173576 MsG0580029238.01.T01:CDS
GACATGTACAAAGTTTCATG+TGG 0.640249 5:-94173554 MsG0580029238.01.T01:CDS
ACACCAATGTCCCAACCAGT+AGG 0.651774 5:+94170411 None:intergenic
GGTGGCCAAAGCAAATGCCA+AGG 0.653984 5:+94173390 None:intergenic
TATGTGATAAAGATGCATGG+AGG 0.687190 5:-94173626 MsG0580029238.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATACATAATTAAGTTAT+AGG - Chr5:94169525-94169544 MsG0580029238.01.T01:intron 10.0%
!! ACAAAAATTTACTTAAAAAT+AGG - Chr5:94171073-94171092 MsG0580029238.01.T01:intron 10.0%
!! CAAAAATTTACTTAAAAATA+GGG - Chr5:94171074-94171093 MsG0580029238.01.T01:intron 10.0%
!! TAATATATAATAGTAATTGA+TGG - Chr5:94172559-94172578 MsG0580029238.01.T01:intron 10.0%
!!! TTCATTAAAACTATATTTTA+GGG - Chr5:94170687-94170706 MsG0580029238.01.T01:intron 10.0%
!!! TTTCATTAAAACTATATTTT+AGG - Chr5:94170686-94170705 MsG0580029238.01.T01:intron 10.0%
!! AAAAAGTTGACATATTTATA+GGG + Chr5:94170730-94170749 None:intergenic 15.0%
!! AAAGTTGAAAAAAAATTTAG+AGG + Chr5:94170762-94170781 None:intergenic 15.0%
!! AAGTTGAAAAAAAATTTAGA+GGG + Chr5:94170761-94170780 None:intergenic 15.0%
!! AATTTGATTCATATATATCA+AGG + Chr5:94173311-94173330 None:intergenic 15.0%
!! ACTTTCTATAATATCTAATA+AGG + Chr5:94170077-94170096 None:intergenic 15.0%
!! ATAACATAACTCTATATAAA+TGG + Chr5:94171211-94171230 None:intergenic 15.0%
!! ATGAAAATGATTCTTAAATA+GGG - Chr5:94172858-94172877 MsG0580029238.01.T01:intron 15.0%
!! CTAAAAATAAAACTAGAAAT+TGG + Chr5:94172788-94172807 None:intergenic 15.0%
!! GTTAGAAATATGAATTAATT+TGG - Chr5:94170625-94170644 MsG0580029238.01.T01:intron 15.0%
!! TAACATAACTCTATATAAAT+GGG + Chr5:94171210-94171229 None:intergenic 15.0%
!! TTCAATTACTATTGAATTTA+AGG - Chr5:94173398-94173417 MsG0580029238.01.T01:CDS 15.0%
!! TTGTTAATTTCTATTAAGTA+CGG - Chr5:94169445-94169464 MsG0580029238.01.T01:intron 15.0%
!!! AAAAAGTTGGTATATTTATA+GGG - Chr5:94171167-94171186 MsG0580029238.01.T01:intron 15.0%
!!! ATGAATTTTTATATTTTTGG+CGG - Chr5:94170945-94170964 MsG0580029238.01.T01:intron 15.0%
!!! ATTTCAATTTTCTATTACTT+TGG - Chr5:94172809-94172828 MsG0580029238.01.T01:intron 15.0%
!!! ATTTGATAATTAGATTTCTA+TGG - Chr5:94170232-94170251 MsG0580029238.01.T01:intron 15.0%
!!! GTACTACTTTTAAAAATAAA+TGG - Chr5:94170173-94170192 MsG0580029238.01.T01:CDS 15.0%
!!! TAAAAAGTTGGTATATTTAT+AGG - Chr5:94171166-94171185 MsG0580029238.01.T01:intron 15.0%
!!! TAGTGATAGAAAATTTTATA+GGG - Chr5:94171105-94171124 MsG0580029238.01.T01:intron 15.0%
!!! TCATATTTAATTCATGTTTT+TGG + Chr5:94170929-94170948 None:intergenic 15.0%
!!! TTCTTTTATTTGTGATTAAA+AGG + Chr5:94171466-94171485 None:intergenic 15.0%
!! AAATTAGATGACTAAAACAT+GGG - Chr5:94173215-94173234 MsG0580029238.01.T01:intron 20.0%
!! ATTATGATGAAAAATACTTG+AGG + Chr5:94172543-94172562 None:intergenic 20.0%
!! CAAAAAGTTGACATATTTAT+AGG + Chr5:94170731-94170750 None:intergenic 20.0%
!! GAAATTAACAATTAATTACC+TGG + Chr5:94169436-94169455 None:intergenic 20.0%
!! GATCATAATAACAATATTGT+AGG + Chr5:94171439-94171458 None:intergenic 20.0%
!! GATGAAAATGATTCTTAAAT+AGG - Chr5:94172857-94172876 MsG0580029238.01.T01:intron 20.0%
!! TAAATTAGATGACTAAAACA+TGG - Chr5:94173214-94173233 MsG0580029238.01.T01:intron 20.0%
!! TAGTTCACAAAAAATAAAGT+AGG - Chr5:94171819-94171838 MsG0580029238.01.T01:intron 20.0%
!! TGAAAATGATTCTTAAATAG+GGG - Chr5:94172859-94172878 MsG0580029238.01.T01:intron 20.0%
!! TGTAATCATAAATATTGTGT+CGG + Chr5:94170362-94170381 None:intergenic 20.0%
!! TTAATATTTCTCGTTTGATA+AGG - Chr5:94172068-94172087 MsG0580029238.01.T01:intron 20.0%
!!! AAATATGGAGATCATATTTT+GGG - Chr5:94172677-94172696 MsG0580029238.01.T01:intron 20.0%
!!! AAATGGGTTAAATATGTTTT+TGG + Chr5:94171194-94171213 None:intergenic 20.0%
!!! AAGTGAAGATGAATAATTTT+TGG + Chr5:94170792-94170811 None:intergenic 20.0%
!!! ACTTCATAATGTTTTGTAAA+AGG + Chr5:94172305-94172324 None:intergenic 20.0%
!!! GTAGTGATAGAAAATTTTAT+AGG - Chr5:94171104-94171123 MsG0580029238.01.T01:intron 20.0%
!!! TAAATATGGAGATCATATTT+TGG - Chr5:94172676-94172695 MsG0580029238.01.T01:intron 20.0%
!!! TATCTACGTTTTTCTTATTT+TGG + Chr5:94171354-94171373 None:intergenic 20.0%
!!! TGAAATTTAAGTTTTGAGTT+AGG - Chr5:94170282-94170301 MsG0580029238.01.T01:intron 20.0%
!!! TGTTGAAGGAAAATTTTAAA+GGG - Chr5:94171136-94171155 MsG0580029238.01.T01:intron 20.0%
!!! TTGAATTAAGTTTAGTTTCA+CGG + Chr5:94172249-94172268 None:intergenic 20.0%
!!! TTTTAAATTATTATCGGTGT+CGG + Chr5:94169506-94169525 None:intergenic 20.0%
!!! TTTTGTCTTATAAACAAGAT+CGG - Chr5:94169957-94169976 MsG0580029238.01.T01:intron 20.0%
! AAAGAAACACTAGAACTAAA+TGG - Chr5:94172180-94172199 MsG0580029238.01.T01:intron 25.0%
! AAGAAAAAGGAAATTAACCT+AGG + Chr5:94169626-94169645 None:intergenic 25.0%
! AATGAAAATTTCGTGTTTGT+AGG + Chr5:94170673-94170692 None:intergenic 25.0%
! AGTTATGAAATTGAATGCAA+TGG + Chr5:94169738-94169757 None:intergenic 25.0%
! ATTAACAATTAATTACCTGG+TGG + Chr5:94169433-94169452 None:intergenic 25.0%
! ATTTCTTAATCAATGTGACA+AGG + Chr5:94169370-94169389 None:intergenic 25.0%
! CAATTGAGTCTAAAAGAAAA+AGG + Chr5:94169639-94169658 None:intergenic 25.0%
! CAGTAAAAACATTCTTCAAA+AGG + Chr5:94171498-94171517 None:intergenic 25.0%
! GAAAATGATTCTTAAATAGG+GGG - Chr5:94172860-94172879 MsG0580029238.01.T01:intron 25.0%
! GGAATTGAGATGTTTAAATA+TGG - Chr5:94172662-94172681 MsG0580029238.01.T01:intron 25.0%
! TCAACAAAAGTTAATGTATC+TGG + Chr5:94169933-94169952 None:intergenic 25.0%
! TCAATTGGTTAGAGTTAAAA+GGG + Chr5:94172139-94172158 None:intergenic 25.0%
! TCATATATATCAAGGAGTTA+AGG + Chr5:94173303-94173322 None:intergenic 25.0%
! TGTTAATTTCCTAATCTTTG+AGG - Chr5:94169657-94169676 MsG0580029238.01.T01:intron 25.0%
! TTCAATTGGTTAGAGTTAAA+AGG + Chr5:94172140-94172159 None:intergenic 25.0%
!! ATTGATTGATTTACTCATAG+AGG - Chr5:94173565-94173584 MsG0580029238.01.T01:CDS 25.0%
!! GACGTTTTTATAAACAAGTT+AGG + Chr5:94171319-94171338 None:intergenic 25.0%
!! GTGTTGAAGGAAAATTTTAA+AGG - Chr5:94171135-94171154 MsG0580029238.01.T01:intron 25.0%
!! TAAAGTCTTTTTCCCATAAA+CGG - Chr5:94170470-94170489 MsG0580029238.01.T01:intron 25.0%
!! TACATATGAGTTTGCTTTAT+AGG + Chr5:94170824-94170843 None:intergenic 25.0%
!! TGATTTGAGATCAAACAATT+TGG - Chr5:94172933-94172952 MsG0580029238.01.T01:intron 25.0%
!!! CTTTTGAAGAATGTTTTTAC+TGG - Chr5:94171496-94171515 MsG0580029238.01.T01:intron 25.0%
!!! GGTAATTTTTTTCCCATAAA+CGG - Chr5:94170253-94170272 MsG0580029238.01.T01:intron 25.0%
!!! GTTGAAGGAAAATTTTAAAG+GGG - Chr5:94171137-94171156 MsG0580029238.01.T01:intron 25.0%
!!! TATGACTACTTTTATGTGTA+TGG - Chr5:94171653-94171672 MsG0580029238.01.T01:intron 25.0%
!!! TGAAGATGAATAATTTTTGG+AGG + Chr5:94170789-94170808 None:intergenic 25.0%
AAACTTGAGAATACCGTTTA+TGG + Chr5:94170486-94170505 None:intergenic 30.0%
AAATCCATTCTTGAGAAAAC+TGG + Chr5:94173683-94173702 None:intergenic 30.0%
AACTTGAGAATACCGTTTAT+GGG + Chr5:94170485-94170504 None:intergenic 30.0%
AAGGGGCTAAAATAAAAAGT+TGG - Chr5:94171154-94171173 MsG0580029238.01.T01:intron 30.0%
AATTTCAAACGTACCGTTTA+TGG + Chr5:94170269-94170288 None:intergenic 30.0%
ACATAAACCTACAACTCTAA+GGG + Chr5:94172894-94172913 None:intergenic 30.0%
ACTAAGCATCATGTTTGATA+AGG - Chr5:94172330-94172349 MsG0580029238.01.T01:intron 30.0%
ACTTGTAACTTCTTATAGCA+AGG - Chr5:94173014-94173033 MsG0580029238.01.T01:intron 30.0%
ATACCTTGATGAAATTACGT+TGG + Chr5:94172763-94172782 None:intergenic 30.0%
ATCAAATCCACCTTATGTTT+GGG - Chr5:94173342-94173361 MsG0580029238.01.T01:intron 30.0%
ATGAAAAATACTTGAGGCTT+TGG + Chr5:94172537-94172556 None:intergenic 30.0%
ATGCTTATGGAAATGAGAAA+TGG - Chr5:94169336-94169355 MsG0580029238.01.T01:intron 30.0%
ATGTATGCTAGCATAAACAA+TGG + Chr5:94169821-94169840 None:intergenic 30.0%
ATTTCAAACGTACCGTTTAT+GGG + Chr5:94170268-94170287 None:intergenic 30.0%
CAAATCCCAATTCTTTATGA+TGG + Chr5:94172837-94172856 None:intergenic 30.0%
CACGTGAATGTACATATTAT+TGG + Chr5:94171583-94171602 None:intergenic 30.0%
CATCATAAAGAATTGGGATT+TGG - Chr5:94172835-94172854 MsG0580029238.01.T01:intron 30.0%
CTTAGATCAAGATTGACAAA+TGG - Chr5:94169699-94169718 MsG0580029238.01.T01:intron 30.0%
GAAATGTGTGAAGAAATGTA+AGG - Chr5:94169788-94169807 MsG0580029238.01.T01:intron 30.0%
TAAGAGACAAACAATTTGAG+AGG + Chr5:94172114-94172133 None:intergenic 30.0%
TACATAAACCTACAACTCTA+AGG + Chr5:94172895-94172914 None:intergenic 30.0%
TACATTGTATATGACCTTTG+CGG - Chr5:94173483-94173502 MsG0580029238.01.T01:CDS 30.0%
TCATTAAATTGCCATGATTG+AGG + Chr5:94172208-94172227 None:intergenic 30.0%
TGGAACCATCATAAAGAATT+GGG - Chr5:94172829-94172848 MsG0580029238.01.T01:intron 30.0%
TTAAAATGTCTCACATGATC+TGG + Chr5:94170211-94170230 None:intergenic 30.0%
TTCTATAATCGAATGTCACA+GGG - Chr5:94172474-94172493 MsG0580029238.01.T01:intron 30.0%
TTGAATACTGTCCAAACATA+TGG + Chr5:94171411-94171430 None:intergenic 30.0%
TTGACAAATGGTTTATGACT+TGG - Chr5:94169711-94169730 MsG0580029238.01.T01:intron 30.0%
TTGGAACCATCATAAAGAAT+TGG - Chr5:94172828-94172847 MsG0580029238.01.T01:intron 30.0%
TTTCTATAATCGAATGTCAC+AGG - Chr5:94172473-94172492 MsG0580029238.01.T01:intron 30.0%
! ATATGAGTTTGCTTTATAGG+AGG + Chr5:94170821-94170840 None:intergenic 30.0%
! ATCATGTTTGATAAGGTACT+TGG - Chr5:94172337-94172356 MsG0580029238.01.T01:intron 30.0%
! ATGAGTTGAGTCTTTATGAT+GGG - Chr5:94169288-94169307 MsG0580029238.01.T01:intron 30.0%
! CTAGTATTTCTCATTTGCTA+GGG - Chr5:94172004-94172023 MsG0580029238.01.T01:intron 30.0%
! TATGAGTTTGCTTTATAGGA+GGG + Chr5:94170820-94170839 None:intergenic 30.0%
! TCGATTATAGAAAGCTTTGT+TGG + Chr5:94172466-94172485 None:intergenic 30.0%
! TTCTAGTGTTTCTTTGTTTG+CGG + Chr5:94172175-94172194 None:intergenic 30.0%
!! AGAATATCTTTAGAGTACTC+CGG + Chr5:94172716-94172735 None:intergenic 30.0%
!! GATCATATTTTGGGAATTCA+AGG - Chr5:94172686-94172705 MsG0580029238.01.T01:intron 30.0%
!! TCAGCAAAAGTTGATGTATT+TGG - Chr5:94169893-94169912 MsG0580029238.01.T01:intron 30.0%
!!! AAGTTTTGAGTTAGGAAGTA+CGG - Chr5:94170290-94170309 MsG0580029238.01.T01:intron 30.0%
AAAATCCTTGGCATTTGCTT+TGG - Chr5:94169407-94169426 MsG0580029238.01.T01:intron 35.0%
ACTAAATGGTTCCTCAATCA+TGG - Chr5:94172194-94172213 MsG0580029238.01.T01:intron 35.0%
ATAGATTCATCACCTAAGTG+AGG + Chr5:94171606-94171625 None:intergenic 35.0%
ATCTAAATCGACAGAAGAGA+TGG + Chr5:94172981-94173000 None:intergenic 35.0%
ATCTTCTATGCCTATGTAGT+TGG - Chr5:94173517-94173536 MsG0580029238.01.T01:CDS 35.0%
ATGAAACACAAACACAGACA+CGG + Chr5:94170440-94170459 None:intergenic 35.0%
ATGTGATAAAGATGCATGGA+GGG - Chr5:94169177-94169196 MsG0580029238.01.T01:CDS 35.0%
ATGTTTCCATGATTGAAGTC+GGG - Chr5:94170002-94170021 MsG0580029238.01.T01:intron 35.0%
CAATCAAAGCCTCAAAGATT+AGG + Chr5:94169669-94169688 None:intergenic 35.0%
CATCCAACGTAATTTCATCA+AGG - Chr5:94172757-94172776 MsG0580029238.01.T01:intron 35.0%
GAAGGGAAACAAATATGTGA+TGG + Chr5:94172433-94172452 None:intergenic 35.0%
GACATGTACAAAGTTTCATG+TGG - Chr5:94169248-94169267 MsG0580029238.01.T01:intron 35.0%
GAGTATGTGATAAAGATGCA+TGG - Chr5:94169173-94169192 MsG0580029238.01.T01:CDS 35.0%
GATCAAATCCACCTTATGTT+TGG - Chr5:94173341-94173360 MsG0580029238.01.T01:intron 35.0%
GATGTTTCCATGATTGAAGT+CGG - Chr5:94170001-94170020 MsG0580029238.01.T01:intron 35.0%
GCTAGTATTTCTCATTTGCT+AGG - Chr5:94172003-94172022 MsG0580029238.01.T01:intron 35.0%
GGTATTCTTGAAAATGTTGG+AGG - Chr5:94169208-94169227 MsG0580029238.01.T01:intron 35.0%
GTCCATGTAGAATATAGACT+GGG - Chr5:94170050-94170069 MsG0580029238.01.T01:CDS 35.0%
GTCTTATAAACAAGATCGGT+GGG - Chr5:94169961-94169980 MsG0580029238.01.T01:intron 35.0%
GTGAAGAAATGTAAGGCTTT+AGG - Chr5:94169795-94169814 MsG0580029238.01.T01:intron 35.0%
TAATGCTCACAAGAAGACAA+AGG + Chr5:94171246-94171265 None:intergenic 35.0%
TAGAGGATGTTTCAAATGTC+AGG - Chr5:94173582-94173601 MsG0580029238.01.T01:CDS 35.0%
TATGTGATAAAGATGCATGG+AGG - Chr5:94169176-94169195 MsG0580029238.01.T01:CDS 35.0%
TCCATGTAGAATATAGACTG+GGG - Chr5:94170051-94170070 MsG0580029238.01.T01:CDS 35.0%
TCTTCTATGCCTATGTAGTT+GGG - Chr5:94173518-94173537 MsG0580029238.01.T01:CDS 35.0%
TGTCCATGTAGAATATAGAC+TGG - Chr5:94170049-94170068 MsG0580029238.01.T01:CDS 35.0%
TGTCTGTGTTTGTGTTTCAT+AGG - Chr5:94170440-94170459 MsG0580029238.01.T01:CDS 35.0%
TGTCTTATAAACAAGATCGG+TGG - Chr5:94169960-94169979 MsG0580029238.01.T01:intron 35.0%
TTGTTGGAAGATCAAGAGAA+GGG + Chr5:94172450-94172469 None:intergenic 35.0%
TTTGCTAGGGTTTGAATTCA+AGG - Chr5:94172017-94172036 MsG0580029238.01.T01:intron 35.0%
TTTGTTGGAAGATCAAGAGA+AGG + Chr5:94172451-94172470 None:intergenic 35.0%
! AAAATGGGTTCGAAGAGATT+TGG - Chr5:94169125-94169144 MsG0580029238.01.T01:CDS 35.0%
! CATAAATATTGTGTCGGTGT+CGG + Chr5:94170356-94170375 None:intergenic 35.0%
! GATGAGTTGAGTCTTTATGA+TGG - Chr5:94169287-94169306 MsG0580029238.01.T01:intron 35.0%
! TGGGGTATTCTTGAAAATGT+TGG - Chr5:94169205-94169224 MsG0580029238.01.T01:intron 35.0%
! TTAAGTTATAGGTGTCGTGT+CGG - Chr5:94169536-94169555 MsG0580029238.01.T01:intron 35.0%
!! ATAGGGACTAAAAGTGTTGA+AGG - Chr5:94171122-94171141 MsG0580029238.01.T01:intron 35.0%
AGACTCAACTCATCATCCTT+AGG + Chr5:94169281-94169300 None:intergenic 40.0%
AGTCACAACTAAGCTAAGTG+AGG + Chr5:94171554-94171573 None:intergenic 40.0%
AGTTAGTGTCCCAACTACAT+AGG + Chr5:94173530-94173549 None:intergenic 40.0%
ATGTTTGGCCTAGTTAGACA+AGG - Chr5:94171695-94171714 MsG0580029238.01.T01:intron 40.0%
ATTGCTAGGTCAGATAAGAC+TGG - Chr5:94172641-94172660 MsG0580029238.01.T01:intron 40.0%
CACATATCCCTTAGAGTTGT+AGG - Chr5:94172884-94172903 MsG0580029238.01.T01:intron 40.0%
CTTAGCTTAGTTGTGACTTG+TGG - Chr5:94171556-94171575 MsG0580029238.01.T01:intron 40.0%
GATACAAGAGTTACCTGCTA+AGG - Chr5:94172610-94172629 MsG0580029238.01.T01:intron 40.0%
GCTTGAAACGTAAAACCCTA+AGG + Chr5:94171738-94171757 None:intergenic 40.0%
GGAGGAAGAAAATGAGACAT+GGG - Chr5:94169226-94169245 MsG0580029238.01.T01:intron 40.0%
GGTAGTTGCAATGATGCTTA+TGG - Chr5:94169323-94169342 MsG0580029238.01.T01:intron 40.0%
TAGGCCAAACATTATCCCAA+AGG + Chr5:94171687-94171706 None:intergenic 40.0%
TAGTTAGACAAGGTCAGTGT+GGG - Chr5:94171705-94171724 MsG0580029238.01.T01:intron 40.0%
TATAGTAAGCCACTAGGAAG+TGG + Chr5:94173043-94173062 None:intergenic 40.0%
TCATGCTATAGTAAGCCACT+AGG + Chr5:94173049-94173068 None:intergenic 40.0%
TCCATGCAGACAAAAATCCT+TGG - Chr5:94169395-94169414 MsG0580029238.01.T01:intron 40.0%
TGGAGGAAGAAAATGAGACA+TGG - Chr5:94169225-94169244 MsG0580029238.01.T01:intron 40.0%
TGTTTCCATGATTGAAGTCG+GGG - Chr5:94170003-94170022 MsG0580029238.01.T01:intron 40.0%
TTCATGTGGAGAGTTTCCTA+AGG - Chr5:94169262-94169281 MsG0580029238.01.T01:intron 40.0%
TTTGGGAATTCAAGGTCATC+CGG - Chr5:94172694-94172713 MsG0580029238.01.T01:intron 40.0%
! AGTGTTTCTTTGTTTGCGGT+AGG + Chr5:94172171-94172190 None:intergenic 40.0%
! TGCACCAGTTTTCTCAAGAA+TGG - Chr5:94173676-94173695 MsG0580029238.01.T01:CDS 40.0%
! TTCTTTGTTTGCGGTAGGTA+GGG + Chr5:94172166-94172185 None:intergenic 40.0%
! TTTCTTTGTTTGCGGTAGGT+AGG + Chr5:94172167-94172186 None:intergenic 40.0%
!! AAGCTTTTGCTATAGGAGCA+AGG - Chr5:94173605-94173624 MsG0580029238.01.T01:CDS 40.0%
!! AGCTTTTGCTATAGGAGCAA+GGG - Chr5:94173606-94173625 MsG0580029238.01.T01:CDS 40.0%
!! GCTACCTTTGGGATAATGTT+TGG - Chr5:94171680-94171699 MsG0580029238.01.T01:intron 40.0%
!! TATGATGGGTTTGTGATCAC+TGG - Chr5:94169302-94169321 MsG0580029238.01.T01:intron 40.0%
!! TGTATGGACTTGCTACCTTT+GGG - Chr5:94171669-94171688 MsG0580029238.01.T01:intron 40.0%
!! TGTCAGGAAGCTTTTGCTAT+AGG - Chr5:94173598-94173617 MsG0580029238.01.T01:CDS 40.0%
!!! AAGATGCATGGAGGGTATTT+TGG - Chr5:94169185-94169204 MsG0580029238.01.T01:CDS 40.0%
!!! AGATGCATGGAGGGTATTTT+GGG - Chr5:94169186-94169205 MsG0580029238.01.T01:CDS 40.0%
AATCGAATGTCACAGGGATG+AGG - Chr5:94172480-94172499 MsG0580029238.01.T01:intron 45.0%
AGTTAGACAAGGTCAGTGTG+GGG - Chr5:94171706-94171725 MsG0580029238.01.T01:intron 45.0%
CACACTGACCTTGTCTAACT+AGG + Chr5:94171706-94171725 None:intergenic 45.0%
CTAACTCGTCGCCATATGTT+TGG - Chr5:94171397-94171416 MsG0580029238.01.T01:intron 45.0%
CTAAGGCAGAGGTAATTGCT+AGG - Chr5:94172627-94172646 MsG0580029238.01.T01:intron 45.0%
CTAGTTAGACAAGGTCAGTG+TGG - Chr5:94171704-94171723 MsG0580029238.01.T01:intron 45.0%
CTCTTCCAGGCATTTGTATC+TGG + Chr5:94173652-94173671 None:intergenic 45.0%
GCCCCAGTCTATATTCTACA+TGG + Chr5:94170055-94170074 None:intergenic 45.0%
GGTAGGTAGGGTAGTTCAAT+TGG + Chr5:94172154-94172173 None:intergenic 45.0%
GTCAGTGTCTGTGTCGTATT+CGG - Chr5:94170411-94170430 MsG0580029238.01.T01:CDS 45.0%
GTTAGTGTCTGTGTCGTGTT+CGG + Chr5:94169480-94169499 None:intergenic 45.0%
GTTTCCATGATTGAAGTCGG+GGG - Chr5:94170004-94170023 MsG0580029238.01.T01:intron 45.0%
TACATTCACGTGCCTCACTT+AGG - Chr5:94171591-94171610 MsG0580029238.01.T01:intron 45.0%
TAGAGCCAGATACAAATGCC+TGG - Chr5:94173644-94173663 MsG0580029238.01.T01:CDS 45.0%
TCGTGTCTACGTTTCTGTGT+AGG + Chr5:94173373-94173392 None:intergenic 45.0%
TTTCCATGATTGAAGTCGGG+GGG - Chr5:94170005-94170024 MsG0580029238.01.T01:intron 45.0%
! CGGATTAGGTGTGTCAGTAT+CGG + Chr5:94169587-94169606 None:intergenic 45.0%
! GCCAAGGATTTTTGTCTGCA+TGG + Chr5:94169399-94169418 None:intergenic 45.0%
! TAGGAAGCACGAACACTCTT+CGG + Chr5:94169607-94169626 None:intergenic 45.0%
! TGGTGTGTTGTTATGTGCTG+AGG - Chr5:94169145-94169164 MsG0580029238.01.T01:CDS 45.0%
!! GTAGGACTAGCCCAAACATA+AGG + Chr5:94173355-94173374 None:intergenic 45.0%
!! GTGTATGGACTTGCTACCTT+TGG - Chr5:94171668-94171687 MsG0580029238.01.T01:intron 45.0%
!!! GATGCATGGAGGGTATTTTG+GGG - Chr5:94169187-94169206 MsG0580029238.01.T01:CDS 45.0%
!! GAAAAATATATAATAATATA+AGG - Chr5:94170873-94170892 MsG0580029238.01.T01:intron 5.0%
!!! AAAAAATTCTAATTTTTTTT+TGG + Chr5:94170905-94170924 None:intergenic 5.0%
!!! AAAAATTCTAAAAAAAATTT+CGG - Chr5:94171000-94171019 MsG0580029238.01.T01:intron 5.0%
!!! AATATGAATTTTTATATTTT+TGG - Chr5:94170942-94170961 MsG0580029238.01.T01:intron 5.0%
!!! GTATTTTTTTAAATTATTAT+CGG + Chr5:94169512-94169531 None:intergenic 5.0%
AAGTGTGTCTCGACATGCGT+CGG - Chr5:94170327-94170346 MsG0580029238.01.T01:CDS 50.0%
ACACCAATGTCCCAACCAGT+AGG + Chr5:94172394-94172413 None:intergenic 50.0%
ACTGGTGCAAAGTCTCTTCC+AGG + Chr5:94173665-94173684 None:intergenic 50.0%
AGAGTTACCTGCTAAGGCAG+AGG - Chr5:94172616-94172635 MsG0580029238.01.T01:intron 50.0%
GATCACATGTGATGCCGCAA+AGG + Chr5:94173500-94173519 None:intergenic 50.0%
GCAATTACCTCTGCCTTAGC+AGG + Chr5:94172626-94172645 None:intergenic 50.0%
GCACGAACACTCTTCGGATT+AGG + Chr5:94169601-94169620 None:intergenic 50.0%
TATCCCCCCGACTTCAATCA+TGG + Chr5:94170011-94170030 None:intergenic 50.0%
TGCTATAGGAGCAAGGGAGA+GGG - Chr5:94173612-94173631 MsG0580029238.01.T01:CDS 50.0%
TTGCTATAGGAGCAAGGGAG+AGG - Chr5:94173611-94173630 MsG0580029238.01.T01:CDS 50.0%
! AAGGTACTTGGCCGTGCATT+GGG - Chr5:94172349-94172368 MsG0580029238.01.T01:intron 50.0%
! GCAAGGTATCCACTTCCTAG+TGG - Chr5:94173031-94173050 MsG0580029238.01.T01:intron 50.0%
! TAAGGTACTTGGCCGTGCAT+TGG - Chr5:94172348-94172367 MsG0580029238.01.T01:intron 50.0%
! TATAGGTGTCGTGTCGGTGT+TGG - Chr5:94169542-94169561 MsG0580029238.01.T01:intron 50.0%
! TCTCCTACTGGTTGGGACAT+TGG - Chr5:94172388-94172407 MsG0580029238.01.T01:intron 50.0%
!! GAAGAGTGTTCGTGCTTCCT+AGG - Chr5:94169606-94169625 MsG0580029238.01.T01:intron 50.0%
!! GGACTAGCCCAAACATAAGG+TGG + Chr5:94173352-94173371 None:intergenic 50.0%
CCACCTTTCCTCCCAATGCA+CGG + Chr5:94172363-94172382 None:intergenic 55.0%
CGTGCATTGGGAGGAAAGGT+GGG - Chr5:94172361-94172380 MsG0580029238.01.T01:intron 55.0%
GGTGGCCAAAGCAAATGCCA+AGG + Chr5:94169415-94169434 None:intergenic 55.0%
TGGCATTTGCTTTGGCCACC+AGG - Chr5:94169415-94169434 MsG0580029238.01.T01:intron 55.0%
AAGGTGGGTCGCTCTCCTAC+TGG - Chr5:94172376-94172395 MsG0580029238.01.T01:intron 60.0%
AGTGTGGGGCGCATGCCTTA+GGG - Chr5:94171720-94171739 MsG0580029238.01.T01:intron 60.0%
CCGTGCATTGGGAGGAAAGG+TGG - Chr5:94172360-94172379 MsG0580029238.01.T01:intron 60.0%
GTACTTGGCCGTGCATTGGG+AGG - Chr5:94172352-94172371 MsG0580029238.01.T01:intron 60.0%
TGGCCGTGCATTGGGAGGAA+AGG - Chr5:94172357-94172376 MsG0580029238.01.T01:intron 60.0%
TGGGTCGCTCTCCTACTGGT+TGG - Chr5:94172380-94172399 MsG0580029238.01.T01:intron 60.0%
! GGGTCGCTCTCCTACTGGTT+GGG - Chr5:94172381-94172400 MsG0580029238.01.T01:intron 60.0%
CAGTGTGGGGCGCATGCCTT+AGG - Chr5:94171719-94171738 MsG0580029238.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 94169119 94173705 94169119 ID=MsG0580029238.01;Name=MsG0580029238.01
Chr5 mRNA 94169119 94173705 94169119 ID=MsG0580029238.01.T01;Parent=MsG0580029238.01;Name=MsG0580029238.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|4|0|245
Chr5 exon 94173388 94173705 94173388 ID=MsG0580029238.01.T01:exon:49790;Parent=MsG0580029238.01.T01
Chr5 exon 94170323 94170472 94170323 ID=MsG0580029238.01.T01:exon:49789;Parent=MsG0580029238.01.T01
Chr5 exon 94170046 94170213 94170046 ID=MsG0580029238.01.T01:exon:49788;Parent=MsG0580029238.01.T01
Chr5 exon 94169119 94169220 94169119 ID=MsG0580029238.01.T01:exon:49787;Parent=MsG0580029238.01.T01
Chr5 CDS 94173388 94173705 94173388 ID=MsG0580029238.01.T01:cds;Parent=MsG0580029238.01.T01
Chr5 CDS 94170323 94170472 94170323 ID=MsG0580029238.01.T01:cds;Parent=MsG0580029238.01.T01
Chr5 CDS 94170046 94170213 94170046 ID=MsG0580029238.01.T01:cds;Parent=MsG0580029238.01.T01
Chr5 CDS 94169119 94169220 94169119 ID=MsG0580029238.01.T01:cds;Parent=MsG0580029238.01.T01
Gene Sequence

>MsG0580029238.01.T01

ATGGAGAAAATGGGTTCGAAGAGATTTGGTGTGTTGTTATGTGCTGAGGATTCAGAGTATGTGATAAAGATGCATGGAGGGTATTTTGGGGTATTCTTGAAAATGTTGGAGGAAGAAAATGAGACATGGGACATGTACAAAGTTTCATGTGGAGAGTTTCCTAAGGATGATGAGTTGAGTCTTTATGATGGGTTTGTGATCACTGGTAGTTGCAATGATGCTTATGGAAATGAGAAATGGATATGTGACCTTGTCACATTGATTAAGAAATTGAACTCCATGCAGACAAAAATCCTTGGCATTTGCTTTGGCCACCAGGTACTTGGCCGTGCATTGGGAGGAAAGGTGGGTCGCTCTCCTACTGGTTGGGACATTGGTGTGAGAAGCATAACATTGCCATCACATATTTGTTTCCCTTCTCTTGATCTTCCAACAAAGCTTTCTATAATCGAATGTCACAGGGATGAGATACAAGAGTTACCTGCTAAGGCAGAGGTAATTGCTAGGTCAGATAAGACTGGAATTGAGATGTTTAAATATGGAGATCATATTTTGGGAATTCAAGGTCATCCGGAGTACTCTAAAGATATTCTTTTGTTTCTTATTGATCGTCTCATCCAACGTAATTTCATCAAGGAAGCTTTTGCTATAGGAGCAAGGGAGAGGGCTGATTTGTTAGAGCCAGATACAAATGCCTGGAAGAGACTTTGCACCAGTTTTCTCAAGAATGGATTTTGA
Protein sequence

>MsG0580029238.01.T01

MEKMGSKRFGVLLCAEDSEYVIKMHGGYFGVFLKMLEEENETWDMYKVSCGEFPKDDELSLYDGFVITGSCNDAYGNEKWICDLVTLIKKLNSMQTKILGICFGHQVLGRALGGKVGRSPTGWDIGVRSITLPSHICFPSLDLPTKLSIIECHRDEIQELPAKAEVIARSDKTGIEMFKYGDHILGIQGHPEYSKDILLFLIDRLIQRNFIKEAFAIGARERADLLEPDTNAWKRLCTSFLKNGF*