AlfalfaGEDB | MsG0580029468.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029468.01

KEGG: K21989
GO: GO:0005515 GO:0016020
PFAM: PF00560 PF02714 PF08263 PF13855 PF13967 PF14703

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029468.01.T01	XP_003616997.1	98.941	661	7	0	540	1200	106	766	0	1360

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029468.01.T01	Q9XEA1	73.74	655	167	2	540	1189	106	760	0	985

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029468.01.T01	G7KCP6	98.941	661	7	0	540	1200	106	766	0.0	1360

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003749.01	MsG0580029468.01	0.828855	7.128425e-55	7.170960e-52
MsG0280007419.01	MsG0580029468.01	0.851569	8.147647e-61	1.656071e-57
MsG0280008235.01	MsG0580029468.01	0.803120	4.055812e-49	2.021497e-46
MsG0380016850.01	MsG0580029468.01	0.801094	1.058885e-48	5.013517e-46
MsG0380017430.01	MsG0580029468.01	0.818711	1.699476e-52	1.281713e-49
MsG0380017983.01	MsG0580029468.01	0.819249	1.282451e-52	9.817009e-50
MsG0380017997.01	MsG0580029468.01	0.808801	2.591239e-50	1.495652e-47
MsG0480021241.01	MsG0580029468.01	0.809162	2.168390e-50	1.263808e-47
MsG0580028228.01	MsG0580029468.01	0.803304	3.715523e-49	1.860669e-46
MsG0580029468.01	MsG0680034906.01	0.817583	3.058975e-52	2.236524e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029468.01.T01	MTR_5g086610	98.941	661	7	0	540	1200	106	766	0.0	1360
MsG0580029468.01.T01	MTR_4g132570	71.037	656	183	3	540	1189	106	760	0.0	967
MsG0580029468.01.T01	MTR_7g094570	64.536	657	228	2	540	1193	106	760	0.0	883
MsG0580029468.01.T01	MTR_5g027510	60.948	612	237	1	540	1149	106	717	0.0	820
MsG0580029468.01.T01	MTR_5g087090	68.802	484	142	5	1	481	1	478	0.0	578
MsG0580029468.01.T01	MTR_5g087090	33.449	577	243	15	96	540	466	1033	2.38e-57	217
MsG0580029468.01.T01	MTR_4g064760	66.453	468	149	5	1	466	1	462	0.0	568
MsG0580029468.01.T01	MTR_4g064760	32.638	527	267	16	90	544	485	995	1.42e-51	198
MsG0580029468.01.T01	MTR_4g064760	29.756	410	189	12	152	477	234	628	6.25e-17	87.0
MsG0580029468.01.T01	MTR_5g086810	70.664	467	130	4	1	466	1	461	0.0	566

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580029468.01.T01	AT4G04340	73.740	655	167	2	540	1189	106	760	985
MsG0580029468.01.T01	AT4G04340	73.740	655	167	2	540	1189	106	760	985
MsG0580029468.01.T01	AT4G04340	73.740	655	167	2	540	1189	106	760	985
MsG0580029468.01.T01	AT3G21620	75.039	641	157	2	540	1177	106	746	983
MsG0580029468.01.T01	AT4G22120	73.354	653	169	2	540	1187	106	758	974
MsG0580029468.01.T01	AT4G22120	73.354	653	169	2	540	1187	106	758	974
MsG0580029468.01.T01	AT4G22120	73.354	653	169	2	540	1187	106	758	974
MsG0580029468.01.T01	AT4G22120	73.354	653	169	2	540	1187	106	758	974
MsG0580029468.01.T01	AT4G22120	73.354	653	169	2	540	1187	106	758	974
MsG0580029468.01.T01	AT4G22120	73.354	653	169	2	540	1187	106	758	974

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Find 252 sgRNAs with CRISPR-Local

Find 716 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCGTGAAGAAGCAA+TGG	0.595265	5:+97328534	MsG0580029468.01.T01:CDS
AAAATGCTAGGAGTGAAATG+GGG	0.730707	5:-97325052	None:intergenic
AAACAAAACGCCAGTCGCGG+AGG	0.655689	5:+97329484	MsG0580029468.01.T01:CDS
AAACAGGGTAATATGGCATA+AGG	0.496095	5:+97329832	MsG0580029468.01.T01:three_prime_UTR
AAACTAGAAATCCAACAATA+TGG	0.385358	5:+97327079	MsG0580029468.01.T01:CDS
AAAGAATTTGTCATCCTCTC+TGG	0.461635	5:+97317545	MsG0580029468.01.T01:CDS
AAATCTAGTTCTTGAATATT+AGG	0.227774	5:-97317630	None:intergenic
AAATCTTTCAAATTGAAGTT+TGG	0.330467	5:-97329363	None:intergenic
AACAAGTGAAAGGTAAAATA+GGG	0.413136	5:-97316907	None:intergenic
AACAATATGGTTGACTGAAT+GGG	0.447238	5:+97327092	MsG0580029468.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATTTCAACACTCATAC+TGG	+	Chr5:97320607-97320626	MsG0580029468.01.T01:intron	30.0%
AAATAAGATAGTAGCCGTTA+TGG	+	Chr5:97322381-97322400	MsG0580029468.01.T01:intron	30.0%
AAATACTAATCCCTATGTGT+AGG	+	Chr5:97327640-97327659	MsG0580029468.01.T01:intron	30.0%
AACAATATGGTTGACTGAAT+GGG	+	Chr5:97327092-97327111	MsG0580029468.01.T01:CDS	30.0%
AACAGATTTGGAAGATGATT+TGG	-	Chr5:97326466-97326485	None:intergenic	30.0%
AAGAACTTACTTCTTGTCAA+TGG	+	Chr5:97317012-97317031	MsG0580029468.01.T01:CDS	30.0%
AAGCAAAGGTTACAAATATG+AGG	-	Chr5:97326812-97326831	None:intergenic	30.0%
AAGTAAGGACTAAACTTAGA+AGG	+	Chr5:97324871-97324890	MsG0580029468.01.T01:intron	30.0%
AATTCAAGGAAAGTTCCTAA+TGG	+	Chr5:97318565-97318584	MsG0580029468.01.T01:intron	30.0%
AATTCCAACACACACTAATA+TGG	-	Chr5:97320215-97320234	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	97316883	97330032	97316883	ID=MsG0580029468.01;Name=MsG0580029468.01
Chr5	mRNA	97316883	97330032	97316883	ID=MsG0580029468.01.T01;Parent=MsG0580029468.01;Name=MsG0580029468.01.T01;_AED=0.29;_eAED=0.29;_QI=0\|0.81\|0.83\|1\|1\|1\|12\|454\|1200
Chr5	exon	97316883	97318230	97316883	ID=MsG0580029468.01.T01:exon:24908;Parent=MsG0580029468.01.T01
Chr5	exon	97319543	97319810	97319543	ID=MsG0580029468.01.T01:exon:24909;Parent=MsG0580029468.01.T01
Chr5	exon	97325037	97325183	97325037	ID=MsG0580029468.01.T01:exon:24910;Parent=MsG0580029468.01.T01
Chr5	exon	97325512	97325647	97325512	ID=MsG0580029468.01.T01:exon:24911;Parent=MsG0580029468.01.T01
Chr5	exon	97325802	97325903	97325802	ID=MsG0580029468.01.T01:exon:24912;Parent=MsG0580029468.01.T01
Chr5	exon	97326308	97326427	97326308	ID=MsG0580029468.01.T01:exon:24913;Parent=MsG0580029468.01.T01
Chr5	exon	97326566	97326646	97326566	ID=MsG0580029468.01.T01:exon:24914;Parent=MsG0580029468.01.T01
Chr5	exon	97326970	97327310	97326970	ID=MsG0580029468.01.T01:exon:24915;Parent=MsG0580029468.01.T01
Chr5	exon	97328003	97328248	97328003	ID=MsG0580029468.01.T01:exon:24916;Parent=MsG0580029468.01.T01
Chr5	exon	97328378	97328702	97328378	ID=MsG0580029468.01.T01:exon:24917;Parent=MsG0580029468.01.T01
Chr5	exon	97328919	97329152	97328919	ID=MsG0580029468.01.T01:exon:24918;Parent=MsG0580029468.01.T01
Chr5	exon	97329324	97330032	97329324	ID=MsG0580029468.01.T01:exon:24919;Parent=MsG0580029468.01.T01
Chr5	CDS	97316883	97318230	97316883	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97319543	97319810	97319543	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97325037	97325183	97325037	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97325512	97325647	97325512	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97325802	97325903	97325802	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97326308	97326427	97326308	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97326566	97326646	97326566	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97326970	97327310	97326970	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97328003	97328248	97328003	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97328378	97328702	97328378	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97328919	97329152	97328919	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	CDS	97329324	97329578	97329324	ID=MsG0580029468.01.T01:cds;Parent=MsG0580029468.01.T01
Chr5	three_prime_UTR	97329579	97330032	97329579	ID=MsG0580029468.01.T01:three_prime_utr;Parent=MsG0580029468.01.T01

Gene Sequence

>MsG0580029468.01.T01

ATGGGGTCCTGTTTTGTTCTATTGCCCTATTTTACCTTTCACTTGTTCTTGTTGCTACTGTTTACTCATTTTACTTCCTACACATTCTCATTATGCAACTATCATGACAGCTTTGCCTTGTTACAATTCAAGAACTTACTTCTTGTCAATGGCACTTCATCTCAGCATGATATTTGGCCTAGTTGTTCCTCTTTTTCTATGAAAACAAATTCTTGGAAAAACAATACAGATTGTTGCGAGTGGGATGGTGTCACGTGCGACACCGTTTTGGATCATGTGATTGGTCTGGACCTTAGCTGCAACAATCTTAAAGGTGAATTACATCTCAATAGTACTATCTTCCAACTTAAACACCTTCAACGACTCAACTTGGCTTTTAATGATTTTTTCGGGTCTTCGGTGCATGATGATATTAGTGATTTGGTGAATCTCACACATCTTAATTTATCAAACACTGGAATCATTGGTAATATTCCTTCCACAATCTCTCACTTGTCAAAATTAGTATCACTTGATCTTAGCAGTAACTGGTACATGGATCAAAAACTCAAACTTGATCCCTTCACATGGAAGAAACTCATTCATAACGCTACAAATTTAAGCGAGCTTCATCTGAATAGTGTTGATATGTCTTCAATCAGAGATAATTCTTTGTTGCTGCTAAAGAATTTGTCATCCTCTCTGGTCTCTCTTAGTCTAGGGAACACTAGTTTGCAAGGAAATTTGGCAAGTGACATTCTCTCTTTACCTAATATTCAAGAACTAGATTTGTCATCTAACGAGGACCTTATTGGAAAACTTCCAATGTTCAACTGGAGCACTCCTCTAAGGTACTTGGATCTCTCTTTAACTTTTTTCTCAGGTGAAATTCCTTATTCCATAGGTCAGTTGAAGTCTCTCAACCAGTTATCGCTTGAAGCGTGTGATTTGGATGGATTAGTTCCTCAATCTTTATGGAACCTCACTCAACTAACACATTTGGACCTTTCATTTAACAAACTTAACGGTGAGATCCCATCATTACTTTCAAACCTCGCACATCTTACTTACTTGGATCTTGAACAAAATAGCTTCACCGGCTTGATCTCGAATATGTTCCACAAGCTTATCAAATTAGAATATTTAGATATTTCCTTTAACAACATTACAGGTCAAGTTCCCTCATCATTGTTCCATCTAACTCAACTTTCTTATTTAGATTTATCATTTAATAAATTTGTTGGCCCGATACCAACAAAAATCAACAAACATTCAAAATTGAGTACTGTGGATTTAAATAATAACATGTTAAATGGAACAATTCCACTCTGGTGTTATTATTTGTCTTCTTTGTTGGAGTTGTACCTCGAAAACCACCTTGAGGGAATCATACCTACAGGTCAGCAGTTTGATACATTTGGAAATGATTCCTATGAAGGGAATAAAATGTTATGTGGATTTCCATTGTCTAAATCATGCAAAAACGATGAAGATCAACCACCACGATCAGTATCTGAAGATGAAGATGAAGGTGAATCAGTATTTGGCTGGAAAGCAGTAGCAATAGGATATGCATGTGGGACAATATTTGGGTTGCCATTGGGATATAATGTATTCTTCACTAGGAAACCTCAATGGCTGAAAATATTTGTCCCCATTTCACTCCTAGCATTTTCTGTTATGGTCCCTGTCAATTGGACCAATGACACCTTGAAACGTTCAAATGTGGTTTATAGCAGCATCGATAAGCTTTCAATTTCAAATATTCCACTTGGATCAAATAGATTTTGGACTCACTTGGTAATGGCTTATGCTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAGCAATGAGATTGTCTTTTCTTGCATCTGAAAGACGCCGTCCTGACCAATTCACGGTACTTGTTAGGAATGTACCGCCTGATGCTGATGAATCAGTCAGTGAGCTAGTTGAACATTTCTTTTTGGTGAACCATCCTGATCAATATCTAACTCATCAGGTTGTTTACGATGCAAAGAAACTCTCTAGTCTAGTTGCTAAGAAGAAGAAAAAACAGAATTGGCTTGACTACTATGAACTTAAATATTCTAGAAACGAATCCATAAGGCCAACTAAAAAGACTGGCTTTTTAGGTCTTTGTGGCAGTAAAGTGGATGCTATTGATTTTTATACTGCTGCAATTGAGAGACTATCAAGAGACATAGAGCTGGAGAAAGATAAGGTGACAAAGAATCCTAAATCTATAATGCCAGCAGCCTTTGTTTCCTTCAAAACTCGTTGGGGTGCTGCAGTTTGTGCACAAACTCAACAAACTAGAAATCCAACAATATGGTTGACTGAATGGGCTCCAGAGCCCCGTGACATATACTGGGATAACATGGCTATACCATATGTTTCTCTCTCAATAAGGAGACTTGTAATTGGTGTTGCGTTCTTCTTTCTTACATTCTTTTTCATGATTCCCATTGCATTCGTACAGTCACTTGCTAATATAGAAGGCATTGAAAAAGCCGCACCATTCCTCAAGTCCATTATTGAAATCGACGTCATCAAGTCTTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGCTATTCCTCATTTTTTTGCCAACAATATTGATGATCATGTCCAAGTTCGAAGGGTTTATAAGTCAGTCTTCTCTGGAAAGAAGATGCGCCTCAAGATATTACATCTTCCAGTTCATTAATGTGTTTCTGGGGAGCATAATTACCGGGACTGCATTCCAACAATTAGATAAATTCATTCATCAGTCTGCAAATGAAATTCCAAAGACAATTGGTGTTTCGATTCCAATGAAAGCAACTTTCTTCATAACATACATAATGGTTGATGGATGGGCAGGATGTGCTGGTGAGATTTTAAGGTTGAAGCCTTTGATATTTTATCACTTAAAGAATTTCTTGTTGGTGAAGACTGAAAAAGACCGTGAAGAAGCAATGGATCCTGGGACTATTGGTTTCAATACAGGAGAACCTCAGATACAACTTTATTTCTTGCTTGGCCTTGTGTATGCTGTAGTCACACCATTTCTACTTCCATACATCATTGTCTTTTTTGGTTTGGCATATCTTGTCTACCGTCATCAGATTATAAACGTGTACAACCAAGAATATGAGAGTGCTGGAGCATTCTGGCCTGATGTCCATGGACGTATTGTATTTGCATTAGTTGTCTCACAACTTCTGTTAATGGGATTATTGAGTACAAAAGAAGCTGCTAATTCGACTCCATTACTCATCGCTCTCCCAGTTTTGACAATATGGTTTCATCGGTTTTGCAAGGGAAGCTACGAACCTGCTTTTACTACTCATCCATTACAGGAAGCAATGGTCAAAGACACATTGGAGCGTACTAAAGAGCCAAACTTCAATTTGAAAGATTTCCTCCATGATGCATATATCCATCCCGTTTTCAAAGATGACGGAGACACAGACAGTGATGTGATGAGTCAAGAGTGGAAGGAAGAGCCGGTAATTGTCCAAACAAAACGCCAGTCGCGGAGGAACACACCTGCGCCTAGCAAACATAGTGGTGGCTCATTACAAGCCTCTATGCATGGCACTACTGATGTCTGA

Protein sequence

>MsG0580029468.01.T01

MGSCFVLLPYFTFHLFLLLLFTHFTSYTFSLCNYHDSFALLQFKNLLLVNGTSSQHDIWPSCSSFSMKTNSWKNNTDCCEWDGVTCDTVLDHVIGLDLSCNNLKGELHLNSTIFQLKHLQRLNLAFNDFFGSSVHDDISDLVNLTHLNLSNTGIIGNIPSTISHLSKLVSLDLSSNWYMDQKLKLDPFTWKKLIHNATNLSELHLNSVDMSSIRDNSLLLLKNLSSSLVSLSLGNTSLQGNLASDILSLPNIQELDLSSNEDLIGKLPMFNWSTPLRYLDLSLTFFSGEIPYSIGQLKSLNQLSLEACDLDGLVPQSLWNLTQLTHLDLSFNKLNGEIPSLLSNLAHLTYLDLEQNSFTGLISNMFHKLIKLEYLDISFNNITGQVPSSLFHLTQLSYLDLSFNKFVGPIPTKINKHSKLSTVDLNNNMLNGTIPLWCYYLSSLLELYLENHLEGIIPTGQQFDTFGNDSYEGNKMLCGFPLSKSCKNDEDQPPRSVSEDEDEGESVFGWKAVAIGYACGTIFGLPLGYNVFFTRKPQWLKIFVPISLLAFSVMVPVNWTNDTLKRSNVVYSSIDKLSISNIPLGSNRFWTHLVMAYAFTFWTCYILKREYQIVAAMRLSFLASERRRPDQFTVLVRNVPPDADESVSELVEHFFLVNHPDQYLTHQVVYDAKKLSSLVAKKKKKQNWLDYYELKYSRNESIRPTKKTGFLGLCGSKVDAIDFYTAAIERLSRDIELEKDKVTKNPKSIMPAAFVSFKTRWGAAVCAQTQQTRNPTIWLTEWAPEPRDIYWDNMAIPYVSLSIRRLVIGVAFFFLTFFFMIPIAFVQSLANIEGIEKAAPFLKSIIEIDVIKSFIQGFLPGIALKLFLIFLPTILMIMSKFEGFISQSSLERRCASRYYIFQFINVFLGSIITGTAFQQLDKFIHQSANEIPKTIGVSIPMKATFFITYIMVDGWAGCAGEILRLKPLIFYHLKNFLLVKTEKDREEAMDPGTIGFNTGEPQIQLYFLLGLVYAVVTPFLLPYIIVFFGLAYLVYRHQIINVYNQEYESAGAFWPDVHGRIVFALVVSQLLLMGLLSTKEAANSTPLLIALPVLTIWFHRFCKGSYEPAFTTHPLQEAMVKDTLERTKEPNFNLKDFLHDAYIHPVFKDDGDTDSDVMSQEWKEEPVIVQTKRQSRRNTPAPSKHSGGSLQASMHGTTDV*