AlfalfaGEDB | MsG0780040564.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040564.01

KEGG: -
GO: GO:0003700 GO:0006351 GO:0006355 GO:0043565
PFAM: PF00168 PF00170 PF08372 PF14144

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040564.01.T01	XP_003625221.1	79.839	496	18	5	1	416	1	494	0	783

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040564.01.T01	Q9M2R0	70.707	495	63	7	1	416	1	492	0	696

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040564.01.T01	A0A2Z6N2X1	74.821	560	44	9	1	465	1	558	0.0	783

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048700.01	MsG0780040564.01	0.810858	9.354333e-51	5.702430e-48
MsG0080048701.01	MsG0780040564.01	0.803320	3.687716e-49	1.847497e-46
MsG0180000076.01	MsG0780040564.01	0.838618	2.583594e-57	3.479711e-54
MsG0180000185.01	MsG0780040564.01	0.838850	2.250734e-57	3.052645e-54
MsG0180000360.01	MsG0780040564.01	0.838578	2.646256e-57	3.559630e-54
MsG0180000445.01	MsG0780040564.01	0.860465	2.027335e-63	5.546943e-60
MsG0180001198.01	MsG0780040564.01	0.817704	2.872454e-52	2.107181e-49
MsG0180001358.01	MsG0780040564.01	0.801966	7.015557e-49	3.395354e-46
MsG0180002421.01	MsG0780040564.01	0.806381	8.458630e-50	4.584308e-47
MsG0180002984.01	MsG0780040564.01	0.882612	9.005754e-71	5.521260e-67

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040564.01.T01	MTR_7g092770	79.839	496	18	5	1	416	1	494	0.0	783
MsG0780040564.01.T01	MTR_7g092750	91.791	402	6	1	480	854	63	464	0.0	751
MsG0780040564.01.T01	MTR_0305s0020	73.589	496	48	7	1	416	1	493	0.0	700
MsG0780040564.01.T01	MTR_7g092750	85.323	402	6	2	480	854	63	438	0.0	688
MsG0780040564.01.T01	MTR_7g092750	90.909	363	6	1	519	854	1	363	0.0	671
MsG0780040564.01.T01	MTR_4g066150	65.253	495	87	9	1	416	1	489	0.0	635
MsG0780040564.01.T01	MTR_3g027150	52.574	544	151	12	7	450	34	570	2.06e-176	530
MsG0780040564.01.T01	MTR_5g010390	51.892	555	153	12	6	466	233	767	1.55e-174	531
MsG0780040564.01.T01	MTR_4g023460	55.078	512	137	11	23	450	388	890	1.04e-171	528
MsG0780040564.01.T01	MTR_0291s0010	50.274	547	169	10	3	453	9	548	1.06e-170	514

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040564.01.T01	AT3G57880	70.707	495	63	7	1	416	1	492	0.0	696
MsG0780040564.01.T01	AT3G57880	70.707	495	63	7	1	416	1	492	0.0	696
MsG0780040564.01.T01	AT3G57880	70.707	495	63	7	1	416	1	492	0.0	696
MsG0780040564.01.T01	AT3G57880	70.707	495	63	7	1	416	1	492	0.0	696
MsG0780040564.01.T01	AT1G51570	68.612	497	73	7	1	416	1	495	0.0	665
MsG0780040564.01.T01	AT5G12970	64.919	496	86	9	1	416	1	488	0.0	597
MsG0780040564.01.T01	AT4G11610	54.600	500	131	10	6	416	101	593	7.41e-173	523
MsG0780040564.01.T01	AT5G06850	52.860	507	138	10	7	416	11	513	1.25e-172	519
MsG0780040564.01.T01	AT4G11610	54.600	500	131	10	6	416	238	730	2.02e-171	523
MsG0780040564.01.T01	AT4G11610	54.600	500	131	10	6	416	234	726	2.75e-171	523

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Find 227 sgRNAs with CRISPR-Local

Find 1174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGTGGCTCCTCAAA+CGG	0.484536	7:+79255140	None:intergenic
AAAATTCAACATCAGGAATG+AGG	0.564641	7:-79242575	MsG0780040564.01.T01:CDS
AAAGAGACCAAACCCCACCT+TGG	0.627049	7:-79255876	MsG0780040564.01.T01:CDS
AAATGCAGTATCTTTATGTT+AGG	0.287072	7:-79255803	MsG0780040564.01.T01:CDS
AACAGAAAATCTTCTGGAGG+AGG	0.502805	7:+79255900	None:intergenic
AACATTCTAAGCTCATTCTC+AGG	0.491670	7:+79241239	None:intergenic
AACTCAATGCTCGCATACGA+TGG	0.565611	7:+79237476	None:intergenic
AACTGTCACTTGCACCATGG+TGG	0.724351	7:-79254613	MsG0780040564.01.T01:CDS
AAGAGTGGAGAGTTTGTTCA+TGG	0.395292	7:+79240003	None:intergenic
AAGTATTGGAGTTCTTGAAG+TGG	0.644135	7:-79254836	MsG0780040564.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCCGTTTCTTTAGTA+CGG	-	Chr7:79245459-79245478	MsG0780040564.01.T01:intron	30.0%
AAAAAGGATGAGAATATGTC+AGG	+	Chr7:79243474-79243493	None:intergenic	30.0%
AAAAGTCTCTTAAGCCTATT+AGG	+	Chr7:79243335-79243354	None:intergenic	30.0%
AAAATTCAACATCAGGAATG+AGG	-	Chr7:79250778-79250797	MsG0780040564.01.T01:intron	30.0%
AAACAAGGTAGTAACAAACA+AGG	-	Chr7:79240151-79240170	MsG0780040564.01.T01:CDS	30.0%
AAACTCCATAGTATGAGTAT+TGG	+	Chr7:79247655-79247674	None:intergenic	30.0%
AACTTAAAGAGATAGATGGA+TGG	+	Chr7:79253806-79253825	None:intergenic	30.0%
AAGAGGTAAAGGAAAATTGT+TGG	+	Chr7:79239298-79239317	None:intergenic	30.0%
AAGATGAATGTAATGCATCT+TGG	+	Chr7:79238979-79238998	None:intergenic	30.0%
AAGTAAGGACTAAACTTACA+AGG	-	Chr7:79240976-79240995	MsG0780040564.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	79237444	79255931	79237444	ID=MsG0780040564.01;Name=MsG0780040564.01
Chr7	mRNA	79237444	79255931	79237444	ID=MsG0780040564.01.T01;Parent=MsG0780040564.01;Name=MsG0780040564.01.T01;_AED=0.38;_eAED=0.38;_QI=0\|0\|0\|0.93\|1\|1\|15\|0\|854
Chr7	exon	79255730	79255931	79255730	ID=MsG0780040564.01.T01:exon:509;Parent=MsG0780040564.01.T01
Chr7	exon	79255398	79255672	79255398	ID=MsG0780040564.01.T01:exon:508;Parent=MsG0780040564.01.T01
Chr7	exon	79255043	79255306	79255043	ID=MsG0780040564.01.T01:exon:507;Parent=MsG0780040564.01.T01
Chr7	exon	79254459	79254959	79254459	ID=MsG0780040564.01.T01:exon:506;Parent=MsG0780040564.01.T01
Chr7	exon	79253696	79253844	79253696	ID=MsG0780040564.01.T01:exon:505;Parent=MsG0780040564.01.T01
Chr7	exon	79250709	79250750	79250709	ID=MsG0780040564.01.T01:exon:504;Parent=MsG0780040564.01.T01
Chr7	exon	79243170	79243273	79243170	ID=MsG0780040564.01.T01:exon:503;Parent=MsG0780040564.01.T01
Chr7	exon	79242509	79242597	79242509	ID=MsG0780040564.01.T01:exon:502;Parent=MsG0780040564.01.T01
Chr7	exon	79242338	79242403	79242338	ID=MsG0780040564.01.T01:exon:501;Parent=MsG0780040564.01.T01
Chr7	exon	79241787	79241846	79241787	ID=MsG0780040564.01.T01:exon:500;Parent=MsG0780040564.01.T01
Chr7	exon	79241588	79241665	79241588	ID=MsG0780040564.01.T01:exon:499;Parent=MsG0780040564.01.T01
Chr7	exon	79241431	79241503	79241431	ID=MsG0780040564.01.T01:exon:498;Parent=MsG0780040564.01.T01
Chr7	exon	79241082	79241353	79241082	ID=MsG0780040564.01.T01:exon:497;Parent=MsG0780040564.01.T01
Chr7	exon	79239985	79240224	79239985	ID=MsG0780040564.01.T01:exon:496;Parent=MsG0780040564.01.T01
Chr7	exon	79237444	79237593	79237444	ID=MsG0780040564.01.T01:exon:495;Parent=MsG0780040564.01.T01
Chr7	CDS	79255730	79255931	79255730	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79255398	79255672	79255398	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79255043	79255306	79255043	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79254459	79254959	79254459	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79253696	79253844	79253696	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79250709	79250750	79250709	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79243170	79243273	79243170	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79242509	79242597	79242509	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79242338	79242403	79242338	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79241787	79241846	79241787	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79241588	79241665	79241588	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79241431	79241503	79241431	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79241082	79241353	79241082	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79239985	79240224	79239985	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01
Chr7	CDS	79237444	79237593	79237444	ID=MsG0780040564.01.T01:cds;Parent=MsG0780040564.01.T01

Gene Sequence

>MsG0780040564.01.T01

ATGCAGAGGCCTCCTCCAGAAGATTTTCTGTTGAAAGAGACCAAACCCCACCTTGGTGGTAAGGTCTCTGGAGACAAGCTTACAAGTACCTATGACCTTGTTGAGCAAATGCAGTATCTTTATGTTAGGGTTGTGAAGGCCAAGGAGCTACCTGCGAAAGATGTTACTGGAAGTTGTGACCCTTATGTTGAAGTCAAGCTTGTTTTTGCTTTTTCGAAGGATCGGATTCAGGCTTCGGTTCTTGAGGTTTTTGTGAAAGATAAGGATTTTGTGAAGGATGATTTTATCGGTCGTGTTTGGTTTGATCTCAATGAGATTCCGAAGAGGGTTCCTCCTGATAGTCCTCTGGCGCCGCAGTGGTATAGATTGGAGGATAGGAAGAGTGATAAGGTGAGAGGGGAGCTGATGCTGGCTGTTTGGATGGGTACTCAAGCTGATGAAGCGTTTCCTGAGGCGTGGCACTCGGATGCGGCGACGGACTTGCAGCCGTCTGATAAGGGAAGATTCCCGGAGGTTTATGTGAAGGCAATTTTGGGAAATCAGACCTTGAGGACTAGAATCTCTCAGAGTAGGAGTATCAATCCGATGTGGAATGAGGATTTGATGTTTGTGGCTGCGGAACCGTTTGAGGAGCCACTGATTTTGAGTGTGGAAGATAGGGTTGCGCCTAACAAAGAGGAACTGCTAGGGAAGTGTGTTATTCCCTTACAGATGATGGACCGGAGACTCGATCACAAACCTATTCATATGAGGGTCTGTCTAGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGTAGTGATCTTCGCCCTACTGCGAAACAGCTGTGGAAGTCAAGTATTGGAGTTCTTGAAGTGGGGATATTGAATGCTTCGGGTTTGATGCCGATGAAATCAAATAATGGGAGGGGGACTACCGATGCTTATTGTGTAGCAAAGTATGGACAGAAATGGGTGCGTACAAGAACCATCATCGATAGCTTTGCACCGAGGTGGAATGAGCAGTATACTTGGGAGGTTTTTGATCCGTGCACTGTCATTACAATTGGTGTATTCGATAACTGTCACTTGCACCATGGTGGTGATAAGCCTGGAGGACAAAGAGATTCAAAAATCGGCAAGGTAAGAATCCGTCTTCCACACACTCGAGCTCGACTGATCGGTCTACACACACATTCCTATCCGCTTCTAGTTCTCATCCCACTGGGTGAAGAAAATGGAGAAATTCAACTGGCTGCGAAGACTGCAGTCTTTGCTGAGCTGGAGAGATCCAAGAGCCACTGCACTTTTTGTGCTATTCTGTTGATTGCTGCTATTGTACTTTATGTGACTCCATTTCAAGTTGTGGCTCTTCTCACTGGAATTTATGTGTTGAGACATCCAAGGTTTAACCCTAGGGTCTATGATGAATGGTACCTTAGTTATAACAGAAATAAAGATTCGGGAGCTTATGATTTGGGTGAATTGGATCAAGCCCTTTTTCTCTATCTTAATGGACAAACTGACCCATCCAGTGTTCAAGACCAAAAACAAAATTCAACATCAGGAATGAGGCCACCAACTCTCAACATTTTTCCTTCTCAGCCTATGCATGTAGAGCCATCATCGTCCAATTCTAAGGCTAGCATGGAGTTAGTTTCTCCGCAAACAAGTGGATCCAAGAGAGGATCAGAGCCACCCAAAGCTATACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGGCTTAGGAAAAAGGCATATATTCAGCAGCTTGAGTCAAGCAGAATTAAACTTAATCAGATGGAACAGGAGCTACATCATGCTAGAAATCAAGGCATGTTCTTTGGTGGAGGTGCAATGTTGGGAGGAGAACAAGGCCTTCCTTCTATGAATACCATTAGCTCAGAGGCTGCAATGTTCGACGTGGAATATGGGAGGTGGCTTGAGGAGCACCACCGTTTAGTATGTGAACTAAGAGCTGCAGTTCATGAGCACATTCCTGAGAATGAGCTTAGAATGTTTGTGGACAAATTCTTGGCTCAATATGATCAAGTAGCTCATCTAAAGAGCTTAGTTGCAAAAGCAGATATATTTCATCTTGTTTCTGGCATGTGGGTTACCCCAATTGAACGTTGCTTCATGTGGATTGGTGGATTTAAGCCTTCTGAACTCATTAAGATCATTGTGAGTCAAATTGAACCATTGACCGAGCAACAAATAATGGGCATATATGGATTGCAACAATCTACACAACAGGGAGAAGATGCTCTCTCTCAAGGACTTGAGGCTCTCAATCAAAATCTTTCTGAAACTATAACATCAGATTCATTGAGCTATCCTCCCAATATGACCAACTACATGGACCAAATGGCAAGGGCCATGAACAAACTCTCCACTCTTGAAAGTTTCGTGAGAGAGGCAGATAATCTACGACACCAAACCATTCATCGTCTGAATCAGATCCTAACGACGCGTCAAGCAGCAAGGTGTTTTCTTGCCATGGCTGAGTACTTCCATCGTATGCGAGCATTGAGTTCTCTGTGGGTGGCACGCCCGCGTCAAGAATAG

Protein sequence

>MsG0780040564.01.T01

MQRPPPEDFLLKETKPHLGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKELPAKDVTGSCDPYVEVKLVFAFSKDRIQASVLEVFVKDKDFVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEDRKSDKVRGELMLAVWMGTQADEAFPEAWHSDAATDLQPSDKGRFPEVYVKAILGNQTLRTRISQSRSINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEELLGKCVIPLQMMDRRLDHKPIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLEVGILNASGLMPMKSNNGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHHGGDKPGGQRDSKIGKVRIRLPHTRARLIGLHTHSYPLLVLIPLGEENGEIQLAAKTAVFAELERSKSHCTFCAILLIAAIVLYVTPFQVVALLTGIYVLRHPRFNPRVYDEWYLSYNRNKDSGAYDLGELDQALFLYLNGQTDPSSVQDQKQNSTSGMRPPTLNIFPSQPMHVEPSSSNSKASMELVSPQTSGSKRGSEPPKAILRRLAQNREAARKSRLRKKAYIQQLESSRIKLNQMEQELHHARNQGMFFGGGAMLGGEQGLPSMNTISSEAAMFDVEYGRWLEEHHRLVCELRAAVHEHIPENELRMFVDKFLAQYDQVAHLKSLVAKADIFHLVSGMWVTPIERCFMWIGGFKPSELIKIIVSQIEPLTEQQIMGIYGLQQSTQQGEDALSQGLEALNQNLSETITSDSLSYPPNMTNYMDQMARAMNKLSTLESFVREADNLRHQTIHRLNQILTTRQAARCFLAMAEYFHRMRALSSLWVARPRQE*